WO2013056070A2 - Heterocyclic compounds and methods of use thereof - Google Patents

Heterocyclic compounds and methods of use thereof Download PDF

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Publication number
WO2013056070A2
WO2013056070A2 PCT/US2012/059983 US2012059983W WO2013056070A2 WO 2013056070 A2 WO2013056070 A2 WO 2013056070A2 US 2012059983 W US2012059983 W US 2012059983W WO 2013056070 A2 WO2013056070 A2 WO 2013056070A2
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WO
WIPO (PCT)
Prior art keywords
benzo
methyl
amino
thiazol
cyclohexanol
Prior art date
Application number
PCT/US2012/059983
Other languages
English (en)
French (fr)
Other versions
WO2013056070A3 (en
Inventor
Michael J. Hadd
Michael D. Hocker
Mark W. Holladay
Gang Liu
Martin W. Rowbottom
Shimin Xu
Original Assignee
Ambit Biosciences Corporation
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority to BR112014009006A priority Critical patent/BR112014009006B8/pt
Priority to DK12780613.1T priority patent/DK2766359T5/en
Application filed by Ambit Biosciences Corporation filed Critical Ambit Biosciences Corporation
Priority to EP12780613.1A priority patent/EP2766359B9/en
Priority to CA2851155A priority patent/CA2851155C/en
Priority to KR1020147012791A priority patent/KR102066297B1/ko
Priority to MX2014004252A priority patent/MX368081B/es
Priority to AU2012322095A priority patent/AU2012322095B2/en
Priority to SI201230628A priority patent/SI2766359T1/sl
Priority to RS20160502A priority patent/RS54936B1/sr
Priority to RU2014119244A priority patent/RU2648997C2/ru
Priority to CN201280062194.7A priority patent/CN104066730B/zh
Priority to NZ623274A priority patent/NZ623274B2/en
Priority to IN3597CHN2014 priority patent/IN2014CN03597A/en
Priority to SG11201401236XA priority patent/SG11201401236XA/en
Priority to ES12780613.1T priority patent/ES2586527T3/es
Priority to JP2014535928A priority patent/JP6162130B2/ja
Publication of WO2013056070A2 publication Critical patent/WO2013056070A2/en
Publication of WO2013056070A3 publication Critical patent/WO2013056070A3/en
Priority to IL231927A priority patent/IL231927A/en
Priority to ZA2014/02549A priority patent/ZA201402549B/en
Priority to PH12014500794A priority patent/PH12014500794B1/en
Priority to HK15101155.2A priority patent/HK1200814A1/zh
Priority to PH12015501955A priority patent/PH12015501955A1/en
Priority to HRP20160744TT priority patent/HRP20160744T2/hr
Priority to CY20161100640T priority patent/CY1117745T1/el
Priority to SM201600223T priority patent/SMT201600223B/it

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/02Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings
    • C07D417/06Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/41Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with two or more ring hetero atoms, at least one of which being nitrogen, e.g. tetrazole
    • A61K31/42Oxazoles
    • A61K31/422Oxazoles not condensed and containing further heterocyclic rings
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    • A61K31/41Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with two or more ring hetero atoms, at least one of which being nitrogen, e.g. tetrazole
    • A61K31/42Oxazoles
    • A61K31/423Oxazoles condensed with carbocyclic rings
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    • A61K31/41Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with two or more ring hetero atoms, at least one of which being nitrogen, e.g. tetrazole
    • A61K31/425Thiazoles
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    • A61K31/4353Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems
    • A61K31/437Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems the heterocyclic ring system containing a five-membered ring having nitrogen as a ring hetero atom, e.g. indolizine, beta-carboline
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    • A61K31/44Non condensed pyridines; Hydrogenated derivatives thereof
    • A61K31/445Non condensed piperidines, e.g. piperocaine
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    • C07DHETEROCYCLIC COMPOUNDS
    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04Ortho-condensed systems
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D487/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
    • C07D487/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
    • C07D487/04Ortho-condensed systems

Definitions

  • heterocyclic compounds including benzothiazolyl, benzoxazolyl, and quinazolyl compounds.
  • the compounds are modulators of type III receptor tyrosine kinase family.
  • the compounds are modulators of CSFIR, FLT3, KIT, and/or PDGFR kinases.
  • compositions comprising the compounds and methods of use thereof. The compounds provided are useful in the treatment, prevention, or amelioration of a disease or disorder related to CSFIR, FLT3, KIT, and/or PDGFR kinase activity or one or more symptoms associated with such diseases or disorders.
  • PKs Protein kinases
  • RTKs Receptor tyrosine kinases
  • PDGFR a PDGFR ⁇ , FLT3, KIT, VEGFR and CSFIR, has been implicated in various proliferative and inflammatory diseases.
  • CSFIR also known as macrophage colony stimulating factor receptor
  • M-CSFR macrophage colony stimulating factor
  • CSF-1 macrophage colony stimulating factor
  • Activation of CSFIR leads to the proliferation, survival, motility and differentiation of cells of the monocyte/macrophage lineage and hence plays a role in normal tissue development and immune defense.
  • Activation of CSFIR also leads to the proliferation and differentiation of osteoclast precursors and therefore mediates the process of bone resorption.
  • CSF1R is believed to be an important therapeutic target for osteoporosis and inflammatory arthritis.
  • elevated M-CFS signaling leads to elevated osteoclast activity, which leads to bone loss attending arthritis and other inflammatory bone erosion.
  • CSF1R therefore represents a promising therapeutic approach for arthritis and other inflammatory bone erosion which is further supported by the efficacy data of known CSF1R inhibitors such as Ki-20227 and GW2580 in arthritic animal models (See Conwat et al. JP£T2008, 326:41-50 and Ohno et al. Eur. J. Immunol. 2008, 38:283-291). Dysregulation of osteoclast development and disruption in the balance of bone resorption and bone formation that underlie osteoporosis might also be treated with a modulator of CSF1R.
  • CSF1R may be a valuable therapeutic target for these solid tumors.
  • M-CSF is one of several cytokines implicated in the recruitment of tumor-associated macrophages (TAMs) that contribute to tumor angiogenesis and tumor progression to metastasis, and more recently, that the preclinical inhibitor GW2580 inhibits tumor metastasis and angiogenesis in mice tumor xenograft experiments (Priceman et al. Blood 2010 115(7): 1461-1471).
  • TAMs tumor-associated macrophages
  • Stimulated osteoclast activity is also believed to underlie the pathophysiology of bone metastases. (Lipton, J. Support. Oncol. 2004 2:205-220). Metastatic bone lesions results in significant localized bone loss and lead to skeletal morbidity, symptoms which include bone pain, bone fractures and hypercalcemia. Inhibition of CSF1R therefore may therefore provide therapy for solid tumors and metastatic cancer including metastases to the bone.
  • FLT3 Another member of the PDGFR family, FLT3 (also called Flk2), plays an important role in the proliferation and differentiation of hematopoietic stem cells and activating mutation or overexpression of this receptor is found in AML (See, Heinrich Mini-Reviews in Medicinal Chemistry 2004, 4(3):255-271, Kiyoi et al. IntJ Hematol, 2005 82:85-92). More than a dozen known FLT3 inhibitors are being developed and some have shown promising clinical effects against AML (See Levis et al. Int J Hematol. 2005 82:100-107).
  • the FLT3 receptor is also expressed in a large portion of dendritic cell progenitors and stimulation of the receptor causes the proliferation and differentiation of these progenitors into dendritic cells (DC). Since dendritic cells are the main initiators of the T-cell mediated immune response, including the autoreactive immune response, FLT3 inhibition is a mechanism for downregulating DC-mediated inflammatory and autoimmune responses.
  • EAE experimental autoimmune encephalomyelitis
  • a high level of the FLT3 ligand is found in the serum of patients with Langerhans cell histiocytosis and systemic lupus erythematosus, which further implicates FLT3 signaling in the dysregulation of dendritic cell progenitors in those autoimmune diseases (See Rolland et al. J. Immunol. 2005 174:3067-3071).
  • GIST gastrointestinal stromal tumors
  • Gain of function mutations of the Kit receptor are also associated with mast cell/myeloid leukemia and seminomas/dysgerminomas (Blume -Jensen Nature 2001 411(17): 355-365. KIT mutations have been also identified in certain melanomas and is recognized as a potential therapeutic target for melanoma (Curtain et al. J Clin. Oncol. 2006
  • the compounds have activity as CSFIR, FLT3, KIT, and/or PDGFR kinase modulators.
  • the compounds are useful in medical treatments, pharmaceutical compositions and methods for modulating the activity of CSFIR, FLT3, KIT, and/or PDGFR kinases, including wildtype and/or mutated forms of CSFIR, FLT3, KIT, and/or PDGFR kinases.
  • the compounds provided herein have activity as CSFIR, FLT3, KIT, and/or PDGFR kinase modulators.
  • the compounds for use in the compositions and methods provided herein have formula (I).
  • stereoisomers mixture of stereoisomers or racemic mixture of stereoisomers thereof, wherein:
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, cycloalkenyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • each Q 1 is independently deuterium, halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, deuterium, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S or NR 7 ;
  • R 7 is hydrogen, deuterium or alkyl
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, deuterium, halo, haloalkyl or alkyl
  • ring A is a bicyclic or tricyclic aryl, heteroaryl or heterocyclyl optionally substituted with one to four substituents selected from Q 2 ;
  • W 1 is N or C
  • W 2 is N, NR 9a or CR 9b ;
  • W 3 is N, NR 10a or CR 10b ;
  • W 4 is N, NR l la or CR l lb ;
  • R 9a , R 9b , R 10a , R 10b , R l la andR l lb are selected as follows:
  • R 9a , R 10a andR l la are each independently hydrogen, deuterium or alkyl and R 9b , R 10b andR llb are each independently hydrogen or Q 2 ; or
  • R 9a and R 10b R 9a and R 10a , R 9b and R 10b , R 9b and R 10a , R 10b and R l la , R 10a and R l lb , R 10a and R l lb or R 10b and R l lb together with the atoms to which they are attached form an aryl, heteroaryl or heterocyclyl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ; and the remainder of R 9a or R l la is hydrogen, deuterium or alkyl; and the remainder of R 9b or R llb is hydrogen or Q 2 ; or
  • each Q 2 is independently halo, deuterium, cyano, oxo, thioxo, alkyl, haloalkyl, haloalkenyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl, heterocyclylalkyl, -R u OR x , -R u OR u OR x ,-R u OR u N(R y )(R z ),
  • each R d is independently hydrogen or alkyl
  • each R u is independently alkylene, alkenylene or a direct bond
  • R w is alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • R y and R z are each independently selected from (i) or (ii) below: (i) R y and R z are each independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl,
  • each Q 7 is independently selected from halo, deuterium, oxo, thioxo, hydroxy, alkoxy, alkyl, haloalkyl, hydroxyalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • n 1 or 2;
  • q is an integer from 0-4,
  • the compound provided herein is a compound of formula (I). In one embodiment, the compound provided herein is a pharmaceutically acceptable salt of the compound of formula (I). In one embodiment, the compound provided herein is a solvate of the compound of formula (I). In one embodiment, the compound provided herein is a hydrate of compound of formula (I). In one embodiment, the compound provided herein is a prodrug of the compound of formula (I). In one embodiment, the compound provided herein is a clathrate of the compound of formula (I).
  • the pharmaceutical compositions deliver amounts effective for the treatment, prevention, or amelioration of diseases or disorders that are modulated or otherwise affected by CSFIR, FLT3, KIT, and/or PDGFR kinases, or one or more symptoms or causes thereof.
  • Such diseases or disorders include without limitation, cancers, nonmalignant proliferation diseases, atherosclerosis, restenosis following vascular angioplasty, fibroproliferative disorders, inflammatory diseases or disorders related to immune dysfunction, infectious diseases, and/or diseases or disorders that can be treated, prevented or managed by modulating the activity, binding or sub-cellular distribution of kinases, wherein such methods comprise administering to a subject, e.g., a human, in need of such treatment, prevention or management a therapeutically and prophylactically effective amount of a compound provided herein.
  • a subject e.g., a human
  • combination therapies using one or more compounds or compositions provided herein, or pharmaceutically acceptable derivatives thereof, in combination with other pharmaceutically active agents for the treatment of the diseases and disorders described herein.
  • such additional pharmaceutical agents include one or more chemotherapeutic agents, anti-proliferative agents, anti-inflammatory agents, immunomodulatory agents or immunosuppressive agents.
  • compositions provided herein, or pharmaceutically acceptable derivatives thereof may be administered simultaneously with, prior to, or after administration of one or more of the above agents.
  • Pharmaceutical compositions containing a compound provided herein and one or more of the above agents are also provided.
  • kits for treating, preventing or ameliorating a disease or disorder that is modulated or otherwise affected by CSFIR, FLT3, KIT, and/or PDGFR kinases such as wild type and/or mutant CSFIR, FLT3, KIT, and/or PDGFR kinases, or one or more symptoms or causes thereof.
  • Fig. 1 depicts the in vivo inhibition of CSF-1 dependent M-NFS-60 tumor cell proliferation in the peritoneal cavity of athymic nu/nu mice from the
  • Fig. 2 depicts the in vivo inhibition of CSF-1 dependent M-NFS-60 tumor cell proliferation in the peritoneal cavity of athymic nu/nu mice from the
  • FIG. 4 depicts the in vivo inhibition of PTHrP -induced hypercalcemia from the administration of Compound B having the Formula I, in BDF1 mice challenged twice daily for seven days with 0.5 mg/kg recombinant PTHrP, as measured by serum TRAPC5B levels, a bone resorption marker.
  • [0027] Provided herein are compounds of formula I that have activity as CSF1R, FLT3, KIT, and/or PDGFRP kinase modulators. Further provided are methods of treating, preventing or ameliorating diseases that are modulated by CSF1R, FLT3, KIT, and/or PDGFRP kinases, and pharmaceutical compositions and dosage forms useful for such methods. The methods and compositions are described in detail in the sections below.
  • Alkyl refers to a straight or branched hydrocarbon chain group consisting solely of carbon and hydrogen atoms, containing no unsaturation, having from one to ten, one to eight, one to six or one to four carbon atoms, and which is attached to the rest of the molecule by a single bond, e.g., methyl, ethyl, n-propyl, 1-methylethyl (z ' so-propyl), n-butyl, n-pentyl, 1,1-dimethylethyl (t-butyl), and the like.
  • alkenylene or "alkenylene chain” refers to a straight or branched chain unsaturated divalent radical consisting solely of carbon and hydrogen atoms, having from two to eight carbon atoms, wherein the unsaturation is present only as double bonds and wherein the double bond can exist between any two carbon atoms in the chain, e.g., ethenylene, prop-l-enylene, but-2-enylene and the like.
  • the alkenylene chain may be attached to the rest of the molecule through any two carbons within the chain.
  • Alkynylene or "alkynylene chain” refers to a straight or branched chain unsaturated divalent radical consisting solely of carbon and hydrogen atoms, having from two to eight carbon atoms, wherein the unsaturation is present only as triple bonds and wherein the triple bond can exist between any two carbon atoms in the chain, e.g., ethynylene, prop-l-ynylene, but-2-ynylene, pent-l-ynylene,
  • alkynylene chain may be attached to the rest of the molecule through any two carbons within the chain.
  • Alkoxy refers to the group having the formula -OR wherein R is alkyl or haloalkyl.
  • An “optionally substituted alkoxy” refers to the group having the formula - OR wherein R is an optionally substituted alkyl as defined herein.
  • Cycloalkyl refers to a stable monovalent monocyclic or bicyclic hydrocarbon group consisting solely of carbon and hydrogen atoms, having from three to ten carbon atoms which is saturated, e.g., cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, decalinyl, norbornane, norbornene, adamantyl,
  • Cycloalkenyl refers to a stable monovalent monocyclic or bicyclic hydrocarbon group consisting solely of carbon and hydrogen atoms, having from three to ten carbon atoms, which is partially unsaturated.
  • Examples of cycloalkenyl include cyclopropene, cyclobutylene, cyclopentene and cyclohexene.
  • Halo, halogen or halide refers to F, CI, Br or I.
  • Haloalkyl refers to an alkyl group, in certain embodiments, Ci_ 6 alkyl group in which one or more of the hydrogen atoms are replaced by halogen.
  • Such groups include, but are not limited to, chloromethyl, trifluoromethyl
  • Heterocycle or “Heterocyclyl” refers to a stable 3- to 15-membered non- aromatic ring radical which consists of carbon atoms and from one to five
  • the heterocyclic ring system radical may be a monocyclic, bicyclic or tricyclic ring or tetracyclic ring system, which may include fused or bridged ring systems; and the nitrogen or sulfur atoms in the heterocyclic ring system radical may be optionally oxidized; the nitrogen atom may be optionally quaternized; and the heterocyclyl radical may be partially or fully saturated.
  • the heterocyclic ring system may be attached to the main structure at any heteroatom or carbon atom which results in the creation of a stable compound.
  • heterocylic radicals include, morpholinyl, piperidinyl, piperazinyl, pyranyl, pyrrolidinyl, oxetanyl, azetidinyl, quinuclidinyl, octahydroquinolizinyl, decahydroquinolizinyl,
  • Heteroaryl refers to a heterocyclyl group as defined above which is aromatic.
  • the heteroaryl groups include, but are not limited to monocyclyl, bicyclyl and tricyclyl groups, and may be attached to the main structure at any heteroatom or carbon atom which results in the creation of a stable compound.
  • Heterocyclylalkyl refers to a group of the formula -RaR e wherein Ra is an alkyl group as defined above and R e is a heterocyclyl group as defined herein, where the alkyl group R a may attach at either the carbon atom or the heteroatom of the heterocyclyl group R ⁇ .
  • the alkyl group and the heterocyclyl group may be optionally substituted as defined herein.
  • IC 50 refers to an amount, concentration or dosage of a particular test compound that achieves a 50% inhibition of a maximal response, such as cell growth or proliferation measured via any the in vitro or cell based assay described herein.
  • Pharmaceutically acceptable salts include, but are not limited to, amine salts, such as but not limited to N,N'-dibenzylethylenediamine, chloroprocaine, choline, ammonia, diethanolamine and other hydroxyalkylamines, ethylenediamine, N-methylglucamine, procaine, N-benzylphenethylamine,
  • alkali metal salts such as but not limited to lithium, potassium and sodium
  • alkali earth metal salts such as but not limited to barium, calcium and magnesium
  • transition metal salts such as but not limited to zinc
  • other metal salts such as but not limited to sodium hydrogen phosphate and disodium phosphate
  • salts of mineral acids such as but not limited to hydrochlorides and sulfates
  • salts of organic acids such as but not limited to acetates, lactates, malates, tartrates, citrates, ascorbates, succinates, butyrates, valerates, fumarates and organic sulfonates.
  • hydrate means a compound provided herein or a salt thereof, that further includes a stoichiometric or non-stoichiometeric amount of water bound by non-covalent intermolecular forces.
  • solvate means a solvate formed from the association of one or more solvent molecules to a compound provided herein.
  • solvate includes hydrates (e.g., mono-hydrate, dihydrate, trihydrate, tetrahydrate and the like).
  • substantially pure means sufficiently homogeneous to appear free of readily detectable impurities as determined by standard methods of analysis, such as thin layer chromatography (TLC), gel electrophoresis, high performance liquid chromatography (HPLC) and mass spectrometry (MS), used by those of skill in the art to assess such purity, or sufficiently pure such that further purification would not detectably alter the physical and chemical properties, such as enzymatic and biological activities, of the substance.
  • TLC thin layer chromatography
  • HPLC high performance liquid chromatography
  • MS mass spectrometry
  • the compounds provided herein may be enantiomerically pure, or be stereoisomeric or diastereomeric mixtures.
  • the compounds provided herein may contain chiral centers. Such chiral centers may be of either the (R) or (S) configuration, or may be a mixture thereof. It is to be understood that the chiral centers of the compounds provided herein may undergo epimerization in vivo. As such, one of skill in the art will recognize that administration of a compound in its (R) form is equivalent, for compounds that undergo epimerization in vivo, to administration of the compound in its (S) form.
  • isotopic composition refers to the amount of each isotope present for a given atom
  • naturally occurring isotopic composition refers to the naturally occurring isotopic composition or abundance for a given atom
  • Atoms containing their natural isotopic composition may also be referred to herein as "non- enriched" atoms.
  • the atoms of the compounds recited herein are meant to represent any stable isotope of that atom. For example, unless otherwise stated, when a position is designated specifically as “H” or “hydrogen”, the position is understood to have hydrogen at its natural isotopic composition.
  • isotopically enriched refers to an atom having an isotopic composition other than the natural isotopic composition of that atom.
  • “Isotopically enriched” may also refer to a compound containing at least one atom having an isotopic composition other than the natural isotopic composition of that atom.
  • haloalkyl may include one or more of the same or different halogens.
  • Anti-cancer agents refers to anti-metabolites (e.g., 5-fluoro-uracil, methotrexate, fludarabine), antimicrotubule agents (e.g., vinca alkaloids such as vincristine, vinblastine; taxanes such as paclitaxel, docetaxel), alkylating agents (e.g., cyclophosphamide, melphalan, carmustine, nitrosoureas such as
  • platinum agents e.g. cisplatin, carboplatin, oxaliplatin, JM-216 or satraplatin, CI-973
  • anthracyclines e.g., doxrubicin, daunorubicin
  • antitumor antibiotics e.g., mitomycin, idarubicin, adriamycin, daunomycin
  • topoisomerase inhibitors e.g., etoposide, camptothecins
  • anti-angiogenesis agents e.g.
  • Sutent® and Bevacizumab or any other cytotoxic agents, (estramustine phosphate, prednimustine), hormones or hormone agonists, antagonists, partial agonists or partial antagonists, kinase inhibitors, and radiation treatment.
  • cytotoxic agents estramustine phosphate, prednimustine
  • hormones or hormone agonists, antagonists, partial agonists or partial antagonists kinase inhibitors
  • radiation treatment any other cytotoxic agents, (estramustine phosphate, prednimustine), hormones or hormone agonists, antagonists, partial agonists or partial antagonists, kinase inhibitors, and radiation treatment.
  • Anti-inflammatory agents refers to matrix metalloproteinase inhibitors, inhibitors of pro-inflammatory cytokines (e.g., anti-TNF molecules, TNF soluble receptors, and IL1) non-steroidal anti-inflammatory drugs (NSAIDs) such as prostaglandin synthase inhibitors (e.g., choline magnesium salicylate, salicylsalicyclic acid), COX-1 or COX-2 inhibitors), or glucocorticoid receptor agonists such as corticosteroids, methylprednisone, prednisone, or cortisone.
  • NSAIDs non-steroidal anti-inflammatory drugs
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, cycloalkenyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • each Q 1 is independently deuterium, halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, deuterium, halo, alkyl, haloalkyl or hydroxyalkyl;
  • R 7 is hydrogen, deuterium or alkyl
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, deuterium, halo or alkyl
  • ring A is a monocyclic, bicyclic or tricyclic aryl, heteroaryl or heterocyclyl optionally substituted with one to four substituents selected from Q 2 ;
  • W 1 is N or C
  • W 2 is N, NR 9a or CR 9b ;
  • W 3 is N, NR 10a or CR 10b ;
  • W 4 is N, NR l la or CR l lb ;
  • R 9a , R 9b , R 10a , R 10b , R l la andR l lb are selected as follows:
  • R 9a , R 10a andR l la are each independently hydrogen or alkyl and R 9b , R 10b andR llb are each independently hydrogen, deuterium, oxo, hydroxyl, halo or alkyl; or ii) R 9a and R 10b , R 9b and R 10b , R 9b and R 10a , R 10b and R lla , R 10a and R l lb or R 10b and R l lb together with the atoms to which they are attached form an aryl, heteroaryl or heterocyclyl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ; and the remainder of R 9a , R 10a and R lla are each independently hydrogen, deuterium or alkyl; and the remainder of R 9b , R 10b and R l lb are each independently hydrogen, deuterium, halo or alkyl; or
  • each Q 2 is independently halo, deuterium, cyano, oxo, thioxo, alkyl, haloalkyl, haloalkenyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl, heterocyclylalkyl, -R u OR x , -R u OR u OR x ,-R u OR u OR x ,-R u OR u OR x ,-R u OR u OR x ,-R u OR u N(R y )(R z ), - R u N(R y )(R z ), -R U SR X , -R U C(J)R X , -
  • R d is hydrogen or alkyl
  • each R u is independently alkylene, alkenylene or a direct bond
  • R w is alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • each R x is independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • cycloalkylalkyl cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl; or
  • R y and R z together with the nitrogen atom to which they are attached, form a heterocyclyl or heteroaryl, optionally substituted with one or more, in one embodiment, one, two or three Q 7 groups; each Q 7 is independently selected from halo, deuterium, oxo, thioxo, hydroxy, alkoxy, alkyl, haloalkyl, hydroxyalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • n 1 or 2;
  • q is an integer from 0-4,
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, cycloalkenyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ; each Q 1 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • ring A is aryl or heteroaryl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 1 is N or C
  • W 2 is N, NR 9a or CR 9b ;
  • W 3 is N, NR 10a or CR 10b ;
  • W 4 is N, NR l la or CR l lb ;
  • R 9a , R 9b , R 10a , R 10b , R l la andR l lb are selected as follows:
  • R 9a , R 10a andR l la are each independently hydrogen or alkyl and R 9b , R 10b andR llb are each independently hydrogen, oxo, hydroxyl, halo or alkyl; or
  • R d is hydrogen or alkyl
  • each R u is independently alkylene or a direct bond
  • R w is alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • each R x is independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • cycloalkenylalkyl cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • R y and R z are each independently selected from (i) or (ii) below:
  • R y and R z are each independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl,
  • R y and R z together with the nitrogen atom to which they are attached, form a heterocyclyl or heteroaryl, optionally substituted with one or more, in one embodiment, one, two or three Q 7 groups; each Q 7 is independently selected from halo, deuterium, oxo, thioxo, hydroxy, alkoxy, alkyl, haloalkyl, hydroxyalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • n 1 or 2;
  • provided herein are compounds of Formula I wherein ring A is heteroaryl, n is 1 and the other variables are as described elsewhere herein. In certain embodiments, provided herein are compounds of Formula I wherein ring A is heteroaryl, W 1 is N, n is 1 or 2 and the other variables are as described elsewhere herein. In certain embodiments, provided herein are compounds of Formula I wherein ring A is heteroaryl, W 1 is C or N, n is 1 or 2, provided that when W 1 is C, n is 1 and the other variables are as described elsewhere herein.
  • ring A is bicyclic or tricyclic heteroaryl, and the other variables are as described elsewhere herein.
  • R 1 and R 2 are each independently selected from hydrogen, halogen, hydroxyl and alkoxy;
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, cycloalkenyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S or NR 7 ;
  • R 7 is hydrogen or alkyl
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, haloalkyl or alkyl
  • ring A is aryl or heteroaryl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 1 is N or C;
  • W 2 is N, NR 9a or CR 9b ;
  • W 3 is N, NR 10a or CR 10b ;
  • W 4 is N, NR l la or CR l lb ;
  • R 9a , R 9b , R 10a , R 10b , R l la andR l lb are selected as follows:
  • R 9a , R 10a andR l la are each independently hydrogen or alkyl and R 9b , R 10b andR llb are each independently hydrogen, oxo, hydroxyl, halo or alkyl; or
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • n 1 or 2;
  • the compounds provided herein are selected such that when W is CH; W 1 is N; Z is S; R 1 and R 2 are hydrogen, then ring A is not pyrrolidine.
  • the compounds provided herein are selected such that when W is CH; W 1 is N; Z is S; R 1 and R 2 are hydrogen, then ring A is not 5 -membered heterocyclyl.
  • the compounds provided herein are selected such that when Z is N, one of R 1 and R 2 is methyl and the other of R 1 and R 2 is H, q is 0, and R 3 is pyridine, and W 1 is N, ring A cannot be nitrogen containing heterocyclyl.
  • the compounds provided herein are selected such that when Z is N, one of R 1 and R 2 is methyl and the other of R 1 and R 2 is H, q is 0, and R 3 is pyridine, and W 1 is N, ring A cannot be heterocyclyl.
  • R 1 and R 2 are each independently selected from hydrogen and halogen.
  • R 1 and R 2 are each hydrogen.
  • R 1 is hydrogen and R 2 is halogen.
  • R 1 and R 2 are each halogen.
  • R 1 and R 2 are each independently selected from hydrogen and fluorine.
  • R 1 is alkoxy and R 2 is hydrogen.
  • R 1 is hydroxy and R 2 is hydrogen.
  • R 3 is hydrogen or alkyl. In certain embodiments, R 3 is hydrogen or methyl. In certain embodiments, R 3 is hydrogen.
  • R 4 is cyclohexyl, optionally substituted with hydroxyl.
  • Y is direct bond or -(CR 5 R 6 ) q -; R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl. In certain embodiments, Y is direct bond or -(CR 5 R 6 ) q -; R 5 and R 6 are each independently hydrogen, alkyl or hydroxyalkyl. In certain embodiments, Y is direct bond, -CH 2 -, -CH(CH 3 )- or -CH(CH 2 OH)-.
  • Z is O, S or NH. In certain embodiments, Z is O or S.
  • each W is independently CR 8 or N; and R 8 is hydrogen, halo or alkyl. In certain embodiments, each W is CR 8 ; and R 8 is hydrogen or alkyl. In certain embodiments, each W is CH.
  • ring A is aryl or heteroaryl, optionally substituted with one or two substituents selected from Q 2 ; where Q 2 is heteroaryl,
  • each R u is independently alkylene or a direct bond;
  • R y and R z are each independently hydrogen or alkyl
  • ring A is heteroaryl, optionally substituted with one or two substituents selected from Q 2 ; where Q 2 is heteroaryl,
  • each R u is independently alkylene or a direct bond;
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S.
  • stereoisomers mixture of stereoisomers or racemic mixture of stereoisomers thereof, wherein:
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, cycloalkenyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • each Q 1 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S or NR 7 ;
  • R 7 is hydrogen or alkyl
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is a bicyclic or tricyclic heteroaryl or heterocyclyl optionally substituted with one to four substituents selected from Q 2 ;
  • W 1 is N or C
  • W 2 is N, NR 9a or CR 9b ;
  • W 3 is N, NR 10a or CR 10b ;
  • W 4 is N, NR l la or CR l lb ;
  • R 9a , R 9b , R 10a , R 10b , R l la andR l lb are selected as follows:
  • R 9b , R 10b and R l lb are each independently hydrogen, halo or alkyl; or
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, haloalkenyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • R d is hydrogen or alkyl
  • each R u is independently alkylene, alkenylene or a direct bond
  • R w is alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • each R x is independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • R y and R z are each independently selected from (i) or (ii) below:
  • R y and R z are each independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl,
  • cycloalkylalkyl cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl; or
  • R y and R z together with the nitrogen atom to which they are attached, form a heterocyclyl or heteroaryl, optionally substituted with one or more, in one embodiment, one, two or three Q 7 groups; each Q 7 is independently selected from halo, deuterium, oxo, thioxo, hydroxy, alkoxy, alkyl, haloalkyl, hydroxyalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • cycloalkenylalkyl aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl and heterocyclylalkyl;
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • n 1 or 2;
  • q is an integer from 0-4,
  • W 1 is N. In certain embodiments, W 1 is C.
  • W 2 is N or CR 9b , where R 9b is hydrogen oxo, hydroxyl or alkyl.
  • W 3 is N or CR 10b , where R 10b is hydrogen or alkyl.
  • W 4 is N or CR l lb , where R l lb is hydrogen or alkyl.
  • W 2 is CR 9b ;
  • W 3 is CR 10b ;
  • W 4 is N or CR l lb ; where R 9b and R 10b together with the carbon atoms on which they are substituted form an aryl or heteroaryl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ;
  • R l lb is hydrogen or alkyl;
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2.
  • W 2 is CR 9b ;
  • W 3 is CR 10b ;
  • W 4 is N; where R 9b and R 10b together with the carbon atoms on which they are substituted form an aryl or heteroaryl ring, optionally substituted with one or two groups selected from Q 2 , where Q 2 is as defined elsewhere herein.
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2.
  • n is 1 or 2. In certain embodiments, n is 1. In certain embodiments, n is 2.
  • q is an integer from 0-4. In certain embodiments, q is 0-3. In certain embodiments, q is 0-2. In certain embodiments, q is 0, 1 or 2. In certain embodiments, q is 0. In certain embodiments, q is 1. In certain embodiments, q is 2.
  • R 1 and R 2 are each independently selected from hydrogen, alkoxy and halogen
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NR 7 ;
  • R 7 is hydrogen or alkyl
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, haloalkyl or alkyl; ring A is aryl or heteroaryl;
  • W 1 is N or C
  • W 2 is N, NR 9a or CR 9b ;
  • W 4 is N, NR l la or CR l lb ;
  • R 9a , R 9b , R 10a , R 10b , R l la andR l lb are selected as follows:
  • R 9a , R 10a andR l la are each independently hydrogen or alkyl; and R 9b , R 10b andR llb are each independently hydrogen, oxo, hydroxyl, halo or alkyl; or
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • each R u is independently alkylene or a direct bond
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • n 1 ;
  • q is an integer from 0-2.
  • R 1 and R 2 are each independently selected from hydrogen, alkoxy and halogen
  • R 4 is cycloalkyl, cycloalkenyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NR 7 ;
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, haloalkyl or alkyl
  • ring A is aryl or heteroaryl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 1 is N or C
  • W 2 is N, NR 9a or CR 9b ;
  • W 3 is N, NR 10a or CR 10b ;
  • W 4 is N, NR l la or CR l lb ;
  • R 9a , R 9b , R 10a , R 10b , R l la andR l lb are selected as follows:
  • R 9a , R 10a andR l la are each independently hydrogen or alkyl and R 9b , R 10b andR llb are each independently hydrogen or Q 2 ; or
  • R 9a and R 10b R 9a and R 10a , R 9b and R 10b , R 9b and R 10a , R 10a and R l la , R 10b and R l la , R 10a and R l lb or R 10b and R l lb together with the atoms to which they are attached form an aryl or heteroaryl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ; the remainder of R 9a or R l la is hydrogen or alkyl; and the remainder of R 9b or R l lb is independently hydrogen or Q 2 ;
  • each Q 2 is independently halo, deuterium, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, haloalkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl, heterocyclylalkyl, -R u OR x , -R u OR u OR x ,-R u OR u OR x ,-R u OR u OR x ,-R u OR u N(R y )(R z ), - R u N(R y )(R z ), -R U SR X , -R U C(J)R X , -R u C(J)OR x ,
  • each R d is independently hydrogen or alkyl
  • each R u is independently alkylene, alkenylene or a direct bond
  • R w is alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • each R x is independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • R y and R z are each independently selected from (i) or (ii) below: (i) R y and R z are each independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl; or
  • R y and R z together with the nitrogen atom to which they are attached, form a heterocyclyl or heteroaryl, optionally substituted with one or more, in one embodiment, one, two or three Q 7 groups; each Q 7 is independently selected from halo, deuterium, oxo, thioxo, hydroxy, alkoxy, alkyl, haloalkyl, hydroxyalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • q is an integer from 0-2;
  • compounds of Formula II wherein ring A is heteroaryl optionally substituted with one to four substituents selected from Q 2 ; n is 1 and the other variables are as described elsewhere herein.
  • R 1 and R 2 are each independently selected from hydrogen, alkoxy and halogen;
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, cycloalkenyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • R 7 is hydrogen or alkyl
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is aryl or heteroaryl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 1 is N or C
  • W 2 is N, NR 9a or CR 9b ;
  • W 3 is N, NR 10a or CR 10b ;
  • W 4 is N, NR l la or CR l lb ;
  • R 9a , R 9b , R 10a , R 10b , R l la andR l lb are selected as follows:
  • R 9a , R 10a andR l la are each independently hydrogen or alkyl and R 9b , R 10b andR llb are each independently hydrogen, oxo, hydroxyl, halo or alkyl; or
  • R 9a and R 10b R 9a and R 10a , R 9b and R 10b , R 9b and R 10a , R 10a and R l la , R 10b and R l la , R 10a and R l lb or R 10b and R l lb together with the atoms to which they are attached form an aryl or heteroaryl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ; the remainder of R 9a , R 10a and R l la are each independently hydrogen or alkyl; the remainder of R 9b R 10b and R l lb are each independently hydrogen, halo or alkyl;
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • q is an integer from 0-2.
  • ring A is heteroaryl optionally substituted with one to four substituents selected from Q 2 and the other variables are as described elsewhere herein.
  • ring A is bicyclic or tricyclic heteroaryl, and the other variables are as described elsewhere herein.
  • stereoisomers mixture of stereoisomers or racemic mixture of stereoisomers thereof, wherein:
  • R 1 and R 2 are each independently selected from hydrogen, alkoxy and halogen
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, cycloalkenyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NR 7 ;
  • R 7 is hydrogen or alkyl
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is heteroaryl or heterocyclyl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 1 is N or C
  • W 2 is N, NR 9a or CR 9b ;
  • W 4 is N, NR l la or CR l lb ;
  • R 9a , R 9b , R 10a , R 10b , R l la andR l lb are selected as follows:
  • R 9a , R 10a andR l la are each independently hydrogen or alkyl and R 9b , R 10b andR llb are each independently hydrogen, oxo, hydroxyl, halo or alkyl; or
  • R 9a and R 10b R 9a and R 10a , R 9b and R 10b , R 9b and R 10a , R 10a and R l la , R 10b and R l la , R 10a and R l lb or R 10b and R l lb together with the atoms to which they are attached form an aryl, heteroaryl or heterocyclyl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ; the remainder of R 9a , R 10a and R l la are each independently hydrogen or alkyl; the remainder of R 9b R 10b and R l lb are each independently hydrogen, halo or alkyl; or
  • each R x is independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • R y and R z are each independently selected from (i) or (ii) below:
  • R y and R z are each independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl,
  • cycloalkylalkyl cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl; or
  • cycloalkenylalkyl aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl and heterocyclylalkyl;
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • stereoisomers mixture of stereoisomers or racemic mixture of stereoisomers thereof, wherein:
  • R 1 and R 2 are each independently selected from hydrogen, alkoxy and halogen
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, cycloalkenyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NR 7 ;
  • R 7 is hydrogen or alkyl
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is bicyclic heteroaryl or heterocyclyl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 1 is N or C
  • W 2 is N, NR 9a or CR 9b ;
  • W 3 is CR 10b ;
  • R 9a , R 9b , and R 10b are selected as follows:
  • R 9a and R 10b or R 9b and R 10b together with the atoms to which they are attached, form an aryl, heteroaryl or heterocyclyl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ; the remainder of R 9a and R 10b is hydrogen or alkyl;
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • each R u is independently alkylene, alkenylene or a direct bond
  • R w is alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • each R x is independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • R y and R z are each independently selected from (i) or (ii) below:
  • R y and R z are each independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl,
  • cycloalkylalkyl cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl; or
  • R y and R z together with the nitrogen atom to which they are attached, form a heterocyclyl or heteroaryl, optionally substituted with one or more, in one embodiment, one, two or three Q 7 groups; each Q 7 is independently selected from halo, deuterium, oxo, thioxo, hydroxy, alkoxy, alkyl, haloalkyl, hydroxyalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • cycloalkenylalkyl aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl and heterocyclylalkyl;
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • q is an integer from 0-2.
  • q is 0; and the other variables are as described elsewhere herein.
  • stereoisomers mixture of stereoisomers or racemic mixture of stereoisomers thereof, wherein:
  • R 1 and R 2 are each independently selected from hydrogen, halogen, alkoxy and hydroxyl;
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another
  • each Q 1 is independently deuterium, halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S or NH
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is heteroaryl or heterocyclyl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 2 is N or CR 9b ;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b , R 10b andR l lb are selected as follows:
  • R 9b , R 10b andR l lb are each independently hydrogen or Q 2 ; or ii) R 9b and R 10b or R 10b and R l lb together with the atoms to which they are attached form an aryl or heteroaryl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ; and the remainder of R 9b , R 10b and R llb is hydrogen or Q 2 ;
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, haloalkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • R d is hydrogen or alkyl
  • each R u is independently alkylene, alkenylene or a direct bond
  • R w is alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • each R x is independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • R y and R z are each independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl,
  • cycloalkylalkyl cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl; or
  • R y and R z together with the nitrogen atom to which they are attached, form a heterocyclyl or heteroaryl, optionally substituted with one or more, in one embodiment, one, two or three Q 7 groups; each Q 7 is independently selected from halo, deuterium, oxo, thioxo, hydroxy, alkoxy, alkyl, haloalkyl, hydroxyalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • cycloalkenylalkyl aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl and heterocyclylalkyl;
  • J is O, NR X or S
  • q is an integer from 0-4.
  • stereoisomers mixture of stereoisomers or racemic mixture of stereoisomers thereof, wherein:
  • R 1 and R 2 are each independently selected from hydrogen, halogen, alkoxy and hydroxyl;
  • R 4 is cycloalkyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S or NH
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is heteroaryl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b , R 10b andR l lb are selected as follows:
  • R 9b , R 10b andR l lb are each independently hydrogen, oxo, hydroxyl, halo or alkyl; or
  • R 9b and R 10b or R 10b and R l lb together with the atoms to which they are attached form an aryl or heteroaryl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ; and the remainder of R 9b , R 10b and R llb is hydrogen, halo or alkyl;
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • n 1 or 2;
  • q is an integer from 0-4.
  • provided herein are compounds of Formula III wherein ring A is heteroaryl and the other variables are as described elsewhere herein. In certain embodiments, provided herein are compounds of Formula III, wherein ring A is bicyclic or tricyclic heteroaryl, and the other variables are as described elsewhere herein.
  • R 1 and R 2 are each independently selected from hydrogen or halogen;
  • R 3 is hydrogen or alkyl;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NH
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is heteroaryl optionally substituted with one to four substituents selected from Q 2 ;
  • W 2 is N or CR 9b ;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b , R 10b andR l lb are selected as follows:
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2; n is 1 or 2; and
  • q is an integer from 0-2.
  • R 4 is cycloalkyl, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is heteroaryl optionally substituted with one to four substituents selected from Q 2 ;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b , R 10b andR l lb are selected as follows:
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • R w is alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • n 1 or 2;
  • q is an integer from 0-2.
  • stereoisomers mixture of stereoisomers or racemic mixture of stereoisomers thereof, wherein:
  • R 1 and R 2 are each independently selected from hydrogen, halogen, alkoxy and hydroxyl;
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another
  • each Q 1 is independently deuterium, halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S or NH
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is heteroaryl optionally substituted with one to four substituents selected from Q 2 ;
  • W 2 is N or CR 9b ;
  • W 4 is N or CR llb ;
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, haloalkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • R d is hydrogen or alkyl
  • each R u is independently alkylene, alkenylene or a direct bond
  • R w is alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl; each R x is independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • R y and R z are each independently selected from (i) or (ii) below:
  • R y and R z are each independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl,
  • cycloalkylalkyl cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl; or
  • R y and R z together with the nitrogen atom to which they are attached, form a heterocyclyl or heteroaryl, optionally substituted with one or more, in one embodiment, one, two or three Q 7 groups; each Q 7 is independently selected from halo, deuterium, oxo, thioxo, hydroxy, alkoxy, alkyl, haloalkyl, hydroxyalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • cycloalkenylalkyl aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl and heterocyclylalkyl;
  • each t is independently an integer from 0-2;
  • q is an integer from 0-4.
  • stereoisomers mixture of stereoisomers or racemic mixture of stereoisomers thereof, wherein:
  • R 1 and R 2 are each independently selected from hydrogen, halogen, alkoxy and hydroxyl;
  • R 4 is cycloalkyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S or NH
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is heteroaryl or heterocyclyl optionally substituted with one to four substituents selected from Q 2 ;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b , R 10b andR l lb are selected as follows:
  • R 9b , R 10b andR l lb are each independently hydrogen, oxo, hydroxyl, halo or alkyl; or
  • R 9b and R 10b or R 10b and R l lb together with the atoms to which they are attached form an aryl or heteroaryl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ; and the remainder of R 9b , R 10b and R llb is hydrogen, halo or alkyl;
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • each R u is independently alkylene, alkenylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • R 4 is cycloalkyl, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • each Q 1 is independently deuterium, halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NH
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is heteroaryl optionally substituted with one to four substituents selected from Q 2 ;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b , R 10b andR l lb are selected as follows:
  • R 9b , R 10b andR l lb are each independently hydrogen, oxo, hydroxyl, halo or alkyl; or
  • R 9b and R 10b or R 10b and R l lb together with the atoms to which they are attached, form an aryl or heteroaryl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ; and the remainder of R 9b , R 10b and R llb is hydrogen, halo or alkyl;
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, haloalkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • R d is hydrogen or alkyl
  • each R u is independently alkylene, alkenylene or a direct bond
  • R w is alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • each R x is independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • R y and R z are each independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl,
  • cycloalkylalkyl cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl; or
  • R y and R z together with the nitrogen atom to which they are attached, form a heterocyclyl or heteroaryl, optionally substituted with one or more, in one embodiment, one, two or three Q groups; each Q is independently selected from halo, deuterium, oxo, thioxo, hydroxy, alkoxy, alkyl, haloalkyl, hydroxyalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • cycloalkenylalkyl aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl and heterocyclylalkyl;
  • each t is independently an integer from 0-2;
  • n 1 or 2;
  • n 1 and the other variables are as described elsewhere herein.
  • R 4 is cycloalkyl, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • Z is O, S, or NH
  • W 2 is N or CR 9b ;
  • W 4 is N or CR llb ;
  • R 9b and R 10b or R 10b and R l lb together with the atoms to which they are attached, form an aryl or heteroaryl ring, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 2 ; and the remainder of R 9b , R 10b and R llb is hydrogen, halo or alkyl;
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • J is O, NR X or S
  • R 4 is cycloalkyl, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Z is O, S, or NH
  • each W is independently CR 8 or N;
  • W 2 is N or CR 9b ;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b and R 10b together with the atoms to which they are attached, form an aryl or heteroaryl ring, optionally substituted with one or two groups selected from
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S; each t is independently an integer from 0-2;
  • R l lb is hydrogen
  • n 1 or 2;
  • q is an integer from 0-2.
  • R 1 and R 2 are each independently selected from hydrogen or halogen;
  • R 3 is hydrogen or alkyl;
  • R 4 is cycloalkyl, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NH
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is heteroaryl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 2 is N or CR 9b ;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b and R 10b together with the atoms to which they are attached, form an aryl or heteroaryl ring, optionally substituted with one or two groups selected from
  • each Q 2 is independently halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • R l lb is hydrogen
  • n 1 or 2;
  • q is an integer from 0-2.
  • R 1 and R 2 are each independently selected from hydrogen or halogen;
  • R 3 is hydrogen or alkyl;
  • R 4 is cycloalkyl, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NH
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is heteroaryl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 2 is N or CR 9b ;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b and R 10b together with the carbon atoms to which they are attached, form an aryl or heteroaryl ring, optionally substituted with one or two groups Q 2 , each Q 2 is independently halo, cyano, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, heteroaryl, heterocyclyl, -R u OR x , -R u N(R y )(R z ), -R U SR X , -R U C(J)R X , - R u C(J)OR x , -R u C(J)N(R y )(R z ), -R u C(J)N(R y )OR x , -R u S(0),R w , -R U N(R X )C(J)R X , - R u N(R x ,
  • R l lb is hydrogen or Q 2 ;
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • q is an integer from 0-2.
  • R 1 and R 2 are each independently selected from hydrogen or halogen;
  • R 3 is hydrogen or alkyl;
  • R 4 is cycloalkyl, optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NH
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl; ring A is heteroaryl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 2 is N or CR 9b ;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b and R 10b together with the carbon atoms to which they are attached, form an aryl or heteroaryl ring, optionally substituted with one or two groups Q 2 , each Q 2 is independently halo, cyano, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, heteroaryl, heterocyclyl, -R u OR x , -R u N(R y )(R z ), -R U SR X , -R U C(J)R X , - R u C(J)OR x , -R u C(J)N(R y )(R z ), -R u C(J)N(R y )OR x , -R u S(0),R w , -R U N(R X )C(J)R X , - R u N(R x ,
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • q is an integer from 0-2.
  • R 1 and R 2 are each independently selected from hydrogen, halogen, and hydroxyl
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NH
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • ring A is heteroaryl, optionally substituted with one to four substituents selected from Q 2 ;
  • W 2 is N or CR 9b ;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b , R 10b andR l lb are selected as follows:
  • R 9b , R 10b andR l lb are each independently hydrogen or Q 2 ; or ii) R 9b and R 10b or R 10b and R l lb , together with the atoms on which they are substituted form an aryl, heteroaryl ring, optionally substituted with one or two groups selected from Q 2 ; and the remainder of R 9b orR l lb is hydrogen or Q 2 ;
  • each Q 2 is hydrogen, halo, alkoxy, tetrazole or pyrazole, where the tetrazole and pyrazole rings are optionally substituted with one or more alkyl;
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • n 1 or 2;
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • each W is independently CR 8 or N;
  • W 3 is N or CR 10b ;
  • W 4 is N or CR llb ;
  • R 9b , R 10b andR l lb are selected as follows:
  • R 9b , R 10b andR l lb are each independently hydrogen, oxo, hydroxyl, halo or alkyl; or
  • R 9b and R 10b or R 10b and R l lb together with the atoms on which they are substituted form an aryl, heteroaryl ring, optionally substituted with one or two groups selected from Q 2 ; and the remainder of R 9b , R 10b or R llb is hydrogen or alkyl;
  • each Q 2 is hydrogen, halo, alkoxy, tetrazole or pyrazole, where the tetrazole and pyrazole rings are optionally substituted with one or more alkyl;
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • n 1 or 2;
  • q is an integer from 0-4.
  • each Q 1 is independently deuterium, halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • W 1 is N or C
  • W 2 is N or CR 9b ;
  • R 9b is hydrogen or Q 2 ;
  • W 5 is N or CR 13 ;
  • R l lb and R 13 are each independently hydrogen or Q ;
  • Q 5 and Q 6 are each independently hydrogen, deuterium, halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, haloalkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl,
  • heteroaralkyl heterocyclyl, heterocyclylalkyl, -R u OR x , - R u OR u OR x , -R u OR u N(R y )(R z ), -R u N(R y )(R z ), -R U SR X ,
  • R w is alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • each R x is independently hydrogen, alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl;
  • cycloalkylalkyl cycloalkenylalkyl, heterocyclyl, heterocyclylalkyl, aryl, aralkyl, heteroaryl, or heteroaralkyl; or
  • R y and R z together with the nitrogen atom to which they are attached, form a heterocyclyl or heteroaryl, optionally substituted with one or more, in one embodiment, one, two or three Q 7 groups; each Q 7 is independently selected from halo, deuterium, oxo, thioxo, hydroxy, alkoxy, alkyl, haloalkyl, hydroxyalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • cycloalkenylalkyl aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl and heterocyclylalkyl;
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • q is an integer from 0-4.
  • provided herein are compounds of Formula IV wherein R 1 and R 2 are both hydrogen.
  • provided herein are compounds of Formula IV wherein R 9b and R l lb are each independently hydrogen, alkyl or haloalkyl and the other variables are as described elsewhere herein.
  • R 4 is cycloalkyl.
  • R 9b andR l lb are each independently hydrogen, halo or alkyl and the other variables are as described elsewhere herein.
  • R 1 and R 2 are each independently selected from hydrogen or halogen;
  • R 3 is hydrogen or alkyl;
  • R 4 is cycloalkyl, cycloalkenyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another embodiment, one, two or three groups selected from Q 1 ;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NH
  • each W is independently CR 8 or N;
  • W 2 is N or CR 9b ;
  • R 9b is hydrogen or alkyl
  • W 4 is N or CR llb ;
  • R l lb is hydrogen, halo or alkyl
  • W 5 is N or CR 13 ;
  • each R u is independently alkylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • each t is independently an integer from 0-2;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • W 2 is N or CR 9b ;
  • R 9b is hydrogen or alkyl
  • R l lb is hydrogen or Q 2 ;
  • Q 2 is halo, deuterium, cyano, oxo, thioxo, alkyl, haloalkyl, haloalkenyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl,
  • each R x is independently hydrogen or alkyl
  • q is an integer from 0-4.
  • stereoisomers mixture of stereoisomers or racemic mixture of stereoisomers thereof, wherein:
  • R 1 and R 2 are each independently selected from hydrogen or halogen;
  • R 3 is hydrogen or alkyl;
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NH
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • W 1 is N or C
  • R 9b is hydrogen or alkyl
  • W 4 is N or CR llb ;
  • R l lb is hydrogen, halo or alkyl;
  • W 5 is N or CR 13 ;
  • R 13 is hydrogen, halo or alkyl
  • Q 5 and Q 6 are each independently hydrogen, deuterium, halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • each R u is independently alkylene, alkenylene or a direct bond
  • R w is alkyl
  • each R x is independently hydrogen or alkyl
  • R y and R z are each independently hydrogen or alkyl
  • J is O, NR X or S
  • each t is independently an integer from 0-2;
  • q is an integer from 0-4.
  • R l lb and R 13 are each independently hydrogen, halo or alkyl and the other variables are as described elsewhere herein.
  • stereoisomers mixture of stereoisomers or racemic mixture of stereoisomers thereof, wherein the variables are as described elsewhere herein.
  • provided herein are compounds of Formula V or pharmaceutically acceptable salts, solvates, hydrates, clathrates, single stereoisomers, mixture of stereoisomers or racemic mixture of stereoisomers thereof, wherein R 1 and R 2 are each independently selected from hydrogen or halogen;
  • R 3 is hydrogen or alkyl
  • R 4 is cycloalkyl, aryl, heterocyclyl or heteroaryl, where R 4 is optionally substituted with one or more, in one embodiment, one to three, in another
  • each Q 1 is independently deuterium, halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • Y is -(CR 5 R 6 ) q -;
  • R 5 andR 6 are each independently hydrogen, halo, alkyl, haloalkyl or hydroxyalkyl;
  • Z is O, S, or NH
  • each W is independently CR 8 or N;
  • R 8 is hydrogen, halo, haloalkyl or alkyl
  • W 4 is N or CR llb ;
  • W 5 is N or CR 13 ;
  • R l lb and R 13 are each independently hydrogen or Q ;
  • Q 2 is halo, deuterium, cyano, oxo, thioxo, alkyl, haloalkyl, haloalkenyl, aminoalkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocyclyl,
  • Q 5 and Q 6 are each independently hydrogen, deuterium, halo, cyano, oxo, thioxo, alkyl, haloalkyl, aminoalkyl, alkenyl, haloalkenyl, alkynyl, cycloalkyl, cycloalkenyl, cycloalkylalkyl, cycloalkenylalkyl, aryl, aralkyl, heteroaryl,
PCT/US2012/059983 2011-10-14 2012-10-12 Heterocyclic compounds and methods of use thereof WO2013056070A2 (en)

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IN3597CHN2014 IN2014CN03597A (pt) 2011-10-14 2012-10-12
NZ623274A NZ623274B2 (en) 2011-10-14 2012-10-12 Heterocyclic compounds and use thereof as modulators of type iii receptor tyrosine kinases
EP12780613.1A EP2766359B9 (en) 2011-10-14 2012-10-12 Heterocyclic compounds and use thereof as modulators of type iii receptor tyrosine kinases
CA2851155A CA2851155C (en) 2011-10-14 2012-10-12 Heterocyclic compounds and methods of use thereof
KR1020147012791A KR102066297B1 (ko) 2011-10-14 2012-10-12 헤테로사이클릭 화합물 및 이의 유형 3 수용체 티로신 키나아제의 조절인자로서의 용도
MX2014004252A MX368081B (es) 2011-10-14 2012-10-12 Compuestos heterociclicos y uso de los mismos como moduladores del receptor de tirosina cinasas tipo iii.
AU2012322095A AU2012322095B2 (en) 2011-10-14 2012-10-12 Heterocyclic compounds and use thereof as modulators of type III receptor tyrosine kinases
SI201230628A SI2766359T1 (sl) 2011-10-14 2012-10-12 Heterociklične spojine in njihova uporaba kot modulatorjev receptorja tirozin kinaze tipa III
DK12780613.1T DK2766359T5 (en) 2011-10-14 2012-10-12 Heterocyclic compounds and their use as modulators of type III receptor tyrosine kinases
RU2014119244A RU2648997C2 (ru) 2011-10-14 2012-10-12 Гетероциклические соединения и способы их использования
CN201280062194.7A CN104066730B (zh) 2011-10-14 2012-10-12 杂环化合物及其作为iii型受体酪氨酸激酶调节剂的用途
BR112014009006A BR112014009006B8 (pt) 2011-10-14 2012-10-12 Compostos heterocíclicos e métodos de uso dos mesmos
SG11201401236XA SG11201401236XA (en) 2011-10-14 2012-10-12 Heterocyclic compounds and use thereof as modulators of type iii receptor tyrosine kinases
RS20160502A RS54936B1 (sr) 2011-10-14 2012-10-12 Heterociklična jedinjenja i njihova upotreba kao modulatora receptora tirozin kinaza tipa iii
ES12780613.1T ES2586527T3 (es) 2011-10-14 2012-10-12 Compuestos heterocíclicos y uso de los mismos como moduladores del receptor de tirosina quinasas de tipo III
JP2014535928A JP6162130B2 (ja) 2011-10-14 2012-10-12 Iii型受容体チロシンキナーゼの調節因子としての複素環式化合物及びその使用
IL231927A IL231927A (en) 2011-10-14 2014-04-03 The heterocyclic compounds and their use as a tyrosine kinase receptor modulator III
ZA2014/02549A ZA201402549B (en) 2011-10-14 2014-04-08 Heterocyclic compounds and use thereof as modulators of type iii receptor tyrosine kinases
PH12014500794A PH12014500794B1 (en) 2011-10-14 2014-04-10 Heterocyclic compounds and use thereof as modulators of type iii receptor tyrosine kinases
HK15101155.2A HK1200814A1 (zh) 2011-10-14 2015-02-03 雜環化合物及其作為 型受體酪氨酸激酶調節劑的用途
PH12015501955A PH12015501955A1 (en) 2011-10-14 2015-09-03 Heterocyclic compounds and use thereof as modulators of type iii receptor tyrosine kinases
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