BR112019008530A2 - plataforma de análise de genoma - Google Patents
plataforma de análise de genomaInfo
- Publication number
- BR112019008530A2 BR112019008530A2 BR112019008530A BR112019008530A BR112019008530A2 BR 112019008530 A2 BR112019008530 A2 BR 112019008530A2 BR 112019008530 A BR112019008530 A BR 112019008530A BR 112019008530 A BR112019008530 A BR 112019008530A BR 112019008530 A2 BR112019008530 A2 BR 112019008530A2
- Authority
- BR
- Brazil
- Prior art keywords
- integrated circuit
- fpga
- perform
- processing steps
- analysis platform
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/40—Population genetics; Linkage disequilibrium
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/20—Sequence assembly
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/30—Data warehousing; Computing architectures
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/40—Encryption of genetic data
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/50—Compression of genetic data
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F21/00—Security arrangements for protecting computers, components thereof, programs or data against unauthorised activity
- G06F21/70—Protecting specific internal or peripheral components, in which the protection of a component leads to protection of the entire computer
- G06F21/71—Protecting specific internal or peripheral components, in which the protection of a component leads to protection of the entire computer to assure secure computing or processing of information
- G06F21/76—Protecting specific internal or peripheral components, in which the protection of a component leads to protection of the entire computer to assure secure computing or processing of information in application-specific integrated circuits [ASIC] or field-programmable devices, e.g. field-programmable gate arrays [FPGA] or programmable logic devices [PLD]
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Physics & Mathematics (AREA)
- Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Theoretical Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Biophysics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Biotechnology (AREA)
- Evolutionary Biology (AREA)
- Medical Informatics (AREA)
- Genetics & Genomics (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Bioethics (AREA)
- Databases & Information Systems (AREA)
- Molecular Biology (AREA)
- Ecology (AREA)
- Physiology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Abstract
trata-se de um sistema, método e aparelho para executar uma análise bioinformática em dados de sequência genética. particularmente, é fornecida uma plataforma de análise de genoma para executar um pipeline de análise de sequência. a plataforma de análise de genoma inclui um ou mais dentre um primeiro circuito integrado, sendo que cada primeiro circuito integrado forma uma unidade de processamento central (cpu) que é responsiva a um ou mais algoritmos de software que são configurados para instruir a cpu a realizar um primeiro conjunto de etapas de processamento genômico do pipeline de análise de sequência. adicionalmente, também é fornecido um segundo circuito integrado, sendo que cada segundo circuito integrado forma um arranjo de portas programáveis em campo (fpga), em que o fpga é configurado por firmware para dispor um conjunto de circuitos lógicos digitais conectados diretamente que são interconectados por uma pluralidade de interconexões físicas para realizar um segundo conjunto de etapas de processamento genômico do pipeline de análise de sequência, sendo que o conjunto de circuitos lógicos digitais conectados diretamente de cada fpga está disposto como um conjunto de mecanismos de processamento para realizar o segundo conjunto de etapas de processamento genômico. uma memória compartilhada também é fornecida.
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201662414637P | 2016-10-28 | 2016-10-28 | |
PCT/US2017/058890 WO2018081654A1 (en) | 2016-10-28 | 2017-10-27 | Bioinformatics systems, apparatuses, and methods for performing secondary and/or tertiary processing |
Publications (1)
Publication Number | Publication Date |
---|---|
BR112019008530A2 true BR112019008530A2 (pt) | 2019-07-09 |
Family
ID=60331697
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
BR112019008530A BR112019008530A2 (pt) | 2016-10-28 | 2017-10-27 | plataforma de análise de genoma |
Country Status (8)
Country | Link |
---|---|
US (2) | US20180121601A1 (pt) |
EP (1) | EP3532967A1 (pt) |
CN (1) | CN110121747B (pt) |
AU (2) | AU2017348382A1 (pt) |
BR (1) | BR112019008530A2 (pt) |
CA (1) | CA3042239A1 (pt) |
SG (2) | SG11201903858XA (pt) |
WO (1) | WO2018081654A1 (pt) |
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US20170270245A1 (en) | 2016-01-11 | 2017-09-21 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods for performing secondary and/or tertiary processing |
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CN111124397B (zh) * | 2019-12-10 | 2023-03-14 | 西安智周深鉴信息科技集团有限公司 | 控制逻辑的复用方法、装置、计算机设备和存储介质 |
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CN111128392B (zh) * | 2019-12-24 | 2023-09-26 | 北京深睿博联科技有限责任公司 | 基于小样本进行疾病识别的数据处理方法以及装置、设备、存储介质 |
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CN112596707A (zh) * | 2020-12-16 | 2021-04-02 | 安诺优达基因科技(北京)有限公司 | 基于生物信息分析工具模块的生物信息分析方法、装置和电子设备 |
CN112860402B (zh) * | 2021-02-20 | 2023-12-05 | 中南大学 | 一种深度学习推理服务的动态批处理任务调度方法及*** |
CN113010676B (zh) * | 2021-03-15 | 2023-12-08 | 北京语言大学 | 一种文本知识提取方法、装置及自然语言推断*** |
US20240117445A1 (en) * | 2021-03-16 | 2024-04-11 | University Of North Texas Health Science Center At Fort Worth | Macrohaplotypes for Forensic DNA Mixture Deconvolution |
CN113095015B (zh) * | 2021-05-08 | 2024-05-24 | 中国科学院上海微***与信息技术研究所 | Sfq时序电路综合计算方法、***以及终端 |
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CN113659993B (zh) * | 2021-08-17 | 2022-06-17 | 深圳市康立生物医疗有限公司 | 免疫批次数据处理方法、装置、终端及可读存储介质 |
CN113627120B (zh) * | 2021-09-17 | 2023-09-12 | 中国科学院上海微***与信息技术研究所 | 超导集成电路布局优化方法和装置、存储介质和终端 |
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US9679104B2 (en) | 2013-01-17 | 2017-06-13 | Edico Genome, Corp. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
WO2014113736A1 (en) * | 2013-01-17 | 2014-07-24 | Edico Genome Corp. | Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform |
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CN103336916B (zh) * | 2013-07-05 | 2016-04-06 | 中国科学院数学与***科学研究院 | 一种测序序列映射方法及*** |
-
2017
- 2017-10-27 US US15/796,696 patent/US20180121601A1/en not_active Abandoned
- 2017-10-27 SG SG11201903858XA patent/SG11201903858XA/en unknown
- 2017-10-27 SG SG10201913208QA patent/SG10201913208QA/en unknown
- 2017-10-27 WO PCT/US2017/058890 patent/WO2018081654A1/en unknown
- 2017-10-27 EP EP17798358.2A patent/EP3532967A1/en active Pending
- 2017-10-27 AU AU2017348382A patent/AU2017348382A1/en not_active Abandoned
- 2017-10-27 CN CN201780081073.XA patent/CN110121747B/zh active Active
- 2017-10-27 CA CA3042239A patent/CA3042239A1/en active Pending
- 2017-10-27 BR BR112019008530A patent/BR112019008530A2/pt unknown
-
2021
- 2021-02-02 US US17/165,828 patent/US20210183468A1/en active Pending
-
2022
- 2022-08-19 AU AU2022218629A patent/AU2022218629B2/en active Active
Also Published As
Publication number | Publication date |
---|---|
CN110121747A (zh) | 2019-08-13 |
AU2022218629A1 (en) | 2022-09-15 |
AU2022218629B2 (en) | 2024-04-04 |
SG10201913208QA (en) | 2020-02-27 |
WO2018081654A1 (en) | 2018-05-03 |
AU2017348382A1 (en) | 2019-06-20 |
US20210183468A1 (en) | 2021-06-17 |
US20180121601A1 (en) | 2018-05-03 |
EP3532967A1 (en) | 2019-09-04 |
CA3042239A1 (en) | 2018-05-03 |
SG11201903858XA (en) | 2019-05-30 |
CN110121747B (zh) | 2024-05-28 |
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