CO2019003599A2 - Método y sistema para almacenar y acceder a datos de bioinformática - Google Patents

Método y sistema para almacenar y acceder a datos de bioinformática

Info

Publication number
CO2019003599A2
CO2019003599A2 CONC2019/0003599A CO2019003599A CO2019003599A2 CO 2019003599 A2 CO2019003599 A2 CO 2019003599A2 CO 2019003599 A CO2019003599 A CO 2019003599A CO 2019003599 A2 CO2019003599 A2 CO 2019003599A2
Authority
CO
Colombia
Prior art keywords
access
store
data
bioinformatics data
genomic
Prior art date
Application number
CONC2019/0003599A
Other languages
English (en)
Inventor
Giorgio Zoia
Daniele Renzi
Original Assignee
Genomsys Sa
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Genomsys Sa filed Critical Genomsys Sa
Publication of CO2019003599A2 publication Critical patent/CO2019003599A2/es

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10—Complex mathematical operations
    • G06F17/16—Matrix or vector computation, e.g. matrix-matrix or matrix-vector multiplication, matrix factorization
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10—Complex mathematical operations
    • G06F17/18—Complex mathematical operations for evaluating statistical data, e.g. average values, frequency distributions, probability functions, regression analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/20—Heterogeneous data integration
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Evolutionary Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Databases & Information Systems (AREA)
  • Data Mining & Analysis (AREA)
  • General Physics & Mathematics (AREA)
  • Bioethics (AREA)
  • Mathematical Physics (AREA)
  • Pure & Applied Mathematics (AREA)
  • Computational Mathematics (AREA)
  • Mathematical Analysis (AREA)
  • Mathematical Optimization (AREA)
  • Software Systems (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • General Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • Algebra (AREA)
  • Artificial Intelligence (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Epidemiology (AREA)
  • Evolutionary Computation (AREA)
  • Public Health (AREA)
  • Molecular Biology (AREA)
  • Organic Chemistry (AREA)
  • Probability & Statistics with Applications (AREA)
  • Signal Processing (AREA)
  • Computing Systems (AREA)
  • Operations Research (AREA)
  • Wood Science & Technology (AREA)

Abstract

Método y sistema para almacenar y acceder a datos genómicos. Los datos de secuenciación genómica se dividen en unidades de acceso de diferentes tipos según la previsibilidad de los datos contenidos. Las unidades de acceso se clasifican en diferentes tipos y la estructuración permite el acceso selectivo y el procesamiento selectivo de datos genómicos.
CONC2019/0003599A 2016-10-11 2019-04-11 Método y sistema para almacenar y acceder a datos de bioinformática CO2019003599A2 (es)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/EP2016/074301 WO2018068828A1 (en) 2016-10-11 2016-10-11 Method and system for storing and accessing bioinformatics data

Publications (1)

Publication Number Publication Date
CO2019003599A2 true CO2019003599A2 (es) 2019-08-30

Family

ID=57241049

Family Applications (1)

Application Number Title Priority Date Filing Date
CONC2019/0003599A CO2019003599A2 (es) 2016-10-11 2019-04-11 Método y sistema para almacenar y acceder a datos de bioinformática

Country Status (16)

Country Link
US (1) US11386979B2 (es)
EP (1) EP3526710A1 (es)
JP (1) JP7092757B2 (es)
KR (1) KR20190073428A (es)
CN (1) CN110168652B (es)
AU (1) AU2016426570A1 (es)
BR (1) BR112019007307A2 (es)
CA (1) CA3039689A1 (es)
CL (1) CL2019000956A1 (es)
CO (1) CO2019003599A2 (es)
EA (1) EA037106B1 (es)
IL (1) IL265909B1 (es)
MX (1) MX2019004123A (es)
PH (1) PH12019500794A1 (es)
SG (1) SG11201903180RA (es)
WO (1) WO2018068828A1 (es)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
SG11201903180RA (en) 2016-10-11 2019-05-30 Genomsys Sa Method and system for storing and accessing bioinformatics data
CN111028883B (zh) * 2019-11-20 2023-07-18 广州达美智能科技有限公司 基于布尔代数的基因处理方法、装置及可读存储介质
EP3896698A1 (en) 2020-04-15 2021-10-20 Genomsys SA Method and system for the efficient data compression in mpeg-g
KR102418617B1 (ko) * 2020-10-13 2022-07-07 서울대학교산학협력단 염기 비율과 연속적 발생을 제한하는 dna 저장 부호화 방법, 프로그램 및 장치

Family Cites Families (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2003188735A (ja) 2001-12-13 2003-07-04 Ntt Data Corp データ圧縮装置及び方法並びにプログラム
US20040153255A1 (en) 2003-02-03 2004-08-05 Ahn Tae-Jin Apparatus and method for encoding DNA sequence, and computer readable medium
WO2006052242A1 (en) * 2004-11-08 2006-05-18 Seirad, Inc. Methods and systems for compressing and comparing genomic data
JP4852313B2 (ja) 2006-01-20 2012-01-11 富士通株式会社 ゲノム解析プログラム、該プログラムを記録した記録媒体、ゲノム解析装置およびゲノム解析方法
WO2009022024A1 (es) * 2007-08-02 2009-02-19 Jose Daniel Llopis Llopis Sistema electrónico de emulación de la cadena de la estructura de 'adn' de un cromosoma
WO2012031033A2 (en) * 2010-08-31 2012-03-08 Lawrence Ganeshalingam Method and systems for processing polymeric sequence data and related information
WO2013067542A1 (en) * 2011-11-03 2013-05-10 Genformatic, Llc Device, system and method for securing and comparing genomic data
US9734284B2 (en) * 2013-03-15 2017-08-15 Micron Technology, Inc. Hardware acceleration of short read mapping for genomic and other types of analyses
US10902937B2 (en) * 2014-02-12 2021-01-26 International Business Machines Corporation Lossless compression of DNA sequences
SG11201903180RA (en) 2016-10-11 2019-05-30 Genomsys Sa Method and system for storing and accessing bioinformatics data

Also Published As

Publication number Publication date
SG11201903180RA (en) 2019-05-30
US20200058378A1 (en) 2020-02-20
CA3039689A1 (en) 2018-04-19
AU2016426570A9 (en) 2019-10-03
EA201990920A1 (ru) 2019-07-31
BR112019007307A2 (pt) 2019-09-17
WO2018068828A1 (en) 2018-04-19
AU2016426570A1 (en) 2019-06-06
EA037106B1 (ru) 2021-02-05
JP7092757B2 (ja) 2022-06-28
KR20190073428A (ko) 2019-06-26
IL265909B1 (en) 2024-03-01
CN110168652A (zh) 2019-08-23
JP2019537781A (ja) 2019-12-26
IL265909A (en) 2019-06-30
US11386979B2 (en) 2022-07-12
PH12019500794A1 (en) 2019-12-02
EP3526710A1 (en) 2019-08-21
CL2019000956A1 (es) 2019-08-23
WO2018068828A9 (en) 2019-09-12
CN110168652B (zh) 2023-11-21
MX2019004123A (es) 2019-06-10

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