BR112019003704A2 - métodos para a detecção de alterações na cópia genômica em amostras de dna - Google Patents
métodos para a detecção de alterações na cópia genômica em amostras de dnaInfo
- Publication number
- BR112019003704A2 BR112019003704A2 BR112019003704A BR112019003704A BR112019003704A2 BR 112019003704 A2 BR112019003704 A2 BR 112019003704A2 BR 112019003704 A BR112019003704 A BR 112019003704A BR 112019003704 A BR112019003704 A BR 112019003704A BR 112019003704 A2 BR112019003704 A2 BR 112019003704A2
- Authority
- BR
- Brazil
- Prior art keywords
- methods
- dna samples
- detecting
- genomic copy
- detecting genomic
- Prior art date
Links
- 238000000034 method Methods 0.000 title abstract 3
- 239000000203 mixture Substances 0.000 abstract 2
- 239000012472 biological sample Substances 0.000 abstract 1
- 239000008280 blood Substances 0.000 abstract 1
- 210000004369 blood Anatomy 0.000 abstract 1
- 238000012217 deletion Methods 0.000 abstract 1
- 230000037430 deletion Effects 0.000 abstract 1
- 230000007614 genetic variation Effects 0.000 abstract 1
- 230000000869 mutational effect Effects 0.000 abstract 1
- 239000000523 sample Substances 0.000 abstract 1
- 230000005945 translocation Effects 0.000 abstract 1
Classifications
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
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- A61P35/00—Antineoplastic agents
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6851—Quantitative amplification
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- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/686—Polymerase chain reaction [PCR]
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- C12Q1/6869—Methods for sequencing
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- C12Q2523/00—Reactions characterised by treatment of reaction samples
- C12Q2523/30—Characterised by physical treatment
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- C12Q2525/191—Modifications characterised by incorporating an adaptor
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- C12Q2537/00—Reactions characterised by the reaction format or use of a specific feature
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- C12Q2537/16—Assays for determining copy number or wherein the copy number is of special importance
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- C12Q2545/00—Reactions characterised by their quantitative nature
- C12Q2545/10—Reactions characterised by their quantitative nature the purpose being quantitative analysis
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- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/159—Microreactors, e.g. emulsion PCR or sequencing, droplet PCR, microcapsules, i.e. non-liquid containers with a range of different permeability's for different reaction components
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- C—CHEMISTRY; METALLURGY
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- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
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- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B40/00—Libraries per se, e.g. arrays, mixtures
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- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
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- G01N2800/7023—(Hyper)proliferation
- G01N2800/7028—Cancer
Abstract
a presente invenção inclui composições e métodos úteis para a detecção de uma alteração mutacional, snp, translocação, inversão, deleção, alteração no número de cópias ou outra variação genética dentro de uma amostra de dna genômico celular ou dna livre de células (cfdna). em algumas modalidades, as composições e métodos da presente invenção proporcionam um nível extremamente elevado de resolução que é particularmente útil na detecção de variações no número de cópias numa pequena fração do cfdna total de uma amostra biológica (por exemplo, sangue).
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
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US201662379593P | 2016-08-25 | 2016-08-25 | |
US201762481538P | 2017-04-04 | 2017-04-04 | |
PCT/US2017/048434 WO2018039463A1 (en) | 2016-08-25 | 2017-08-24 | Methods for the detection of genomic copy changes in dna samples |
Publications (1)
Publication Number | Publication Date |
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BR112019003704A2 true BR112019003704A2 (pt) | 2019-05-28 |
Family
ID=61245331
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
BR112019003704A BR112019003704A2 (pt) | 2016-08-25 | 2017-08-24 | métodos para a detecção de alterações na cópia genômica em amostras de dna |
Country Status (12)
Country | Link |
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US (2) | US11319594B2 (pt) |
EP (1) | EP3504347A4 (pt) |
JP (3) | JP7217224B2 (pt) |
KR (2) | KR20230035431A (pt) |
CN (2) | CN109804080B (pt) |
AU (1) | AU2017315769B2 (pt) |
BR (1) | BR112019003704A2 (pt) |
CA (1) | CA3034649A1 (pt) |
MX (1) | MX2019002093A (pt) |
RU (1) | RU2019108294A (pt) |
SG (1) | SG11201901371XA (pt) |
WO (1) | WO2018039463A1 (pt) |
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JP6913089B2 (ja) | 2015-11-11 | 2021-08-04 | レゾリューション バイオサイエンス, インコーポレイテッド | Dnaライブラリーの高効率構築 |
RU2019108294A (ru) * | 2016-08-25 | 2020-09-25 | Резолюшн Байосайенс, Инк. | Способы обнаружения изменений количества геномных копий в образцах днк |
JP2021514663A (ja) * | 2018-03-08 | 2021-06-17 | セント・ジョーンズ・ユニバーシティSt. Johns University | 循環性血清無細胞dnaバイオマーカー及び方法 |
AU2019351130A1 (en) | 2018-09-27 | 2021-04-08 | Grail, Llc | Methylation markers and targeted methylation probe panel |
CN111118610A (zh) * | 2018-10-31 | 2020-05-08 | 深圳华大基因股份有限公司 | 用于基因突变高深度测序的基因芯片及其制备方法和应用 |
CN112930407A (zh) * | 2018-11-02 | 2021-06-08 | 加利福尼亚大学董事会 | 使用非人类核酸诊断和治疗癌症的方法 |
KR102452413B1 (ko) * | 2019-08-19 | 2022-10-11 | 주식회사 지씨지놈 | 핵산 단편간 거리 정보를 이용한 염색체 이상 검출 방법 |
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KR102184277B1 (ko) * | 2020-01-16 | 2020-11-30 | 성균관대학교산학협력단 | 초음파 진단 및 dna 검사 일체형 ai 자가 건강 관리 장치 및 이를 이용한 원격 의료 진단 방법 |
US11211147B2 (en) | 2020-02-18 | 2021-12-28 | Tempus Labs, Inc. | Estimation of circulating tumor fraction using off-target reads of targeted-panel sequencing |
US11211144B2 (en) | 2020-02-18 | 2021-12-28 | Tempus Labs, Inc. | Methods and systems for refining copy number variation in a liquid biopsy assay |
US11475981B2 (en) | 2020-02-18 | 2022-10-18 | Tempus Labs, Inc. | Methods and systems for dynamic variant thresholding in a liquid biopsy assay |
CN113496760B (zh) * | 2020-04-01 | 2024-01-12 | 深圳华大基因科技服务有限公司 | 基于第三代测序的多倍体基因组组装方法和装置 |
CN113113085B (zh) * | 2021-03-15 | 2022-08-19 | 杭州杰毅生物技术有限公司 | 基于智能宏基因组测序数据肿瘤检测的分析***及方法 |
GB202108237D0 (en) * | 2021-06-09 | 2021-07-21 | Univ London | Cancer methods |
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CN109804080A (zh) | 2019-05-24 |
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AU2017315769B2 (en) | 2024-02-01 |
KR20190041510A (ko) | 2019-04-22 |
KR20230035431A (ko) | 2023-03-13 |
US11319594B2 (en) | 2022-05-03 |
US20180163272A1 (en) | 2018-06-14 |
CN117286217A (zh) | 2023-12-26 |
MX2019002093A (es) | 2019-06-20 |
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