CN110168087A - Dna标签及其应用 - Google Patents
Dna标签及其应用 Download PDFInfo
- Publication number
- CN110168087A CN110168087A CN201780083033.9A CN201780083033A CN110168087A CN 110168087 A CN110168087 A CN 110168087A CN 201780083033 A CN201780083033 A CN 201780083033A CN 110168087 A CN110168087 A CN 110168087A
- Authority
- CN
- China
- Prior art keywords
- dna
- sequence
- connector
- nucleic acid
- sequencing
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 238000012163 sequencing technique Methods 0.000 claims description 58
- 238000000034 method Methods 0.000 claims description 32
- 238000012545 processing Methods 0.000 claims description 23
- 238000000137 annealing Methods 0.000 claims description 18
- 230000029087 digestion Effects 0.000 claims description 18
- 108020004707 nucleic acids Proteins 0.000 claims description 18
- 102000039446 nucleic acids Human genes 0.000 claims description 18
- 150000007523 nucleic acids Chemical class 0.000 claims description 18
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 claims description 16
- 238000003776 cleavage reaction Methods 0.000 claims description 13
- 230000007017 scission Effects 0.000 claims description 13
- 238000013459 approach Methods 0.000 claims description 8
- 238000000746 purification Methods 0.000 claims description 8
- 238000012408 PCR amplification Methods 0.000 claims description 7
- 238000007405 data analysis Methods 0.000 claims description 6
- 239000011324 bead Substances 0.000 claims description 4
- 239000002773 nucleotide Substances 0.000 claims description 2
- 125000003729 nucleotide group Chemical group 0.000 claims description 2
- 108091008146 restriction endonucleases Proteins 0.000 claims description 2
- 230000035772 mutation Effects 0.000 description 50
- 108020004414 DNA Proteins 0.000 description 49
- 238000001514 detection method Methods 0.000 description 33
- 238000006243 chemical reaction Methods 0.000 description 26
- 239000002585 base Substances 0.000 description 24
- 238000004321 preservation Methods 0.000 description 17
- 230000035508 accumulation Effects 0.000 description 15
- 238000009825 accumulation Methods 0.000 description 15
- 239000000872 buffer Substances 0.000 description 15
- 239000012154 double-distilled water Substances 0.000 description 15
- 238000011534 incubation Methods 0.000 description 15
- 208000024172 Cardiovascular disease Diseases 0.000 description 13
- 206010028980 Neoplasm Diseases 0.000 description 13
- 201000011510 cancer Diseases 0.000 description 13
- 238000005516 engineering process Methods 0.000 description 13
- 238000012216 screening Methods 0.000 description 13
- 210000000130 stem cell Anatomy 0.000 description 13
- 108091035707 Consensus sequence Proteins 0.000 description 12
- 230000000295 complement effect Effects 0.000 description 12
- 230000004770 neurodegeneration Effects 0.000 description 12
- 208000015122 neurodegenerative disease Diseases 0.000 description 12
- 239000003153 chemical reaction reagent Substances 0.000 description 10
- 238000011160 research Methods 0.000 description 8
- 239000000243 solution Substances 0.000 description 8
- 230000003321 amplification Effects 0.000 description 6
- 238000004458 analytical method Methods 0.000 description 6
- 238000013461 design Methods 0.000 description 6
- 238000003199 nucleic acid amplification method Methods 0.000 description 6
- 238000002360 preparation method Methods 0.000 description 6
- 230000008569 process Effects 0.000 description 6
- 239000003513 alkali Substances 0.000 description 5
- 239000007853 buffer solution Substances 0.000 description 4
- 201000010099 disease Diseases 0.000 description 4
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 4
- 239000012634 fragment Substances 0.000 description 4
- 239000000203 mixture Substances 0.000 description 4
- 230000000869 mutational effect Effects 0.000 description 4
- 102000004190 Enzymes Human genes 0.000 description 3
- 108090000790 Enzymes Proteins 0.000 description 3
- 239000008186 active pharmaceutical agent Substances 0.000 description 3
- 238000005119 centrifugation Methods 0.000 description 3
- 230000014509 gene expression Effects 0.000 description 3
- 238000012165 high-throughput sequencing Methods 0.000 description 3
- 230000002779 inactivation Effects 0.000 description 3
- 108090000623 proteins and genes Proteins 0.000 description 3
- 238000012795 verification Methods 0.000 description 3
- 102000012410 DNA Ligases Human genes 0.000 description 2
- 108010061982 DNA Ligases Proteins 0.000 description 2
- 101001100327 Homo sapiens RNA-binding protein 45 Proteins 0.000 description 2
- 102100038823 RNA-binding protein 45 Human genes 0.000 description 2
- 230000032683 aging Effects 0.000 description 2
- 230000008901 benefit Effects 0.000 description 2
- 230000015572 biosynthetic process Effects 0.000 description 2
- 125000004122 cyclic group Chemical group 0.000 description 2
- 238000002474 experimental method Methods 0.000 description 2
- 239000000284 extract Substances 0.000 description 2
- 238000001914 filtration Methods 0.000 description 2
- 230000001939 inductive effect Effects 0.000 description 2
- 239000000463 material Substances 0.000 description 2
- 238000005259 measurement Methods 0.000 description 2
- 238000002156 mixing Methods 0.000 description 2
- 238000010369 molecular cloning Methods 0.000 description 2
- 230000010355 oscillation Effects 0.000 description 2
- 238000011176 pooling Methods 0.000 description 2
- 230000035945 sensitivity Effects 0.000 description 2
- 238000003786 synthesis reaction Methods 0.000 description 2
- 238000001712 DNA sequencing Methods 0.000 description 1
- 101150044325 DRB1 gene Proteins 0.000 description 1
- 102210048109 DRB1*01:01 Human genes 0.000 description 1
- 108010067770 Endopeptidase K Proteins 0.000 description 1
- 101100268646 Homo sapiens ABL1 gene Proteins 0.000 description 1
- 208000026350 Inborn Genetic disease Diseases 0.000 description 1
- 150000001298 alcohols Chemical class 0.000 description 1
- 230000000692 anti-sense effect Effects 0.000 description 1
- 238000007622 bioinformatic analysis Methods 0.000 description 1
- 239000008280 blood Substances 0.000 description 1
- 210000004369 blood Anatomy 0.000 description 1
- 210000004027 cell Anatomy 0.000 description 1
- 238000010276 construction Methods 0.000 description 1
- NHVNXKFIZYSCEB-XLPZGREQSA-N dTTP Chemical compound O=C1NC(=O)C(C)=CN1[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)C1 NHVNXKFIZYSCEB-XLPZGREQSA-N 0.000 description 1
- 238000011161 development Methods 0.000 description 1
- 230000018109 developmental process Effects 0.000 description 1
- 238000003745 diagnosis Methods 0.000 description 1
- 230000006806 disease prevention Effects 0.000 description 1
- 238000001962 electrophoresis Methods 0.000 description 1
- 238000010201 enrichment analysis Methods 0.000 description 1
- 238000010195 expression analysis Methods 0.000 description 1
- 230000004907 flux Effects 0.000 description 1
- 238000013467 fragmentation Methods 0.000 description 1
- 238000006062 fragmentation reaction Methods 0.000 description 1
- 208000016361 genetic disease Diseases 0.000 description 1
- 230000002068 genetic effect Effects 0.000 description 1
- 230000006698 induction Effects 0.000 description 1
- 238000007689 inspection Methods 0.000 description 1
- 239000012528 membrane Substances 0.000 description 1
- 230000011987 methylation Effects 0.000 description 1
- 238000007069 methylation reaction Methods 0.000 description 1
- 238000002493 microarray Methods 0.000 description 1
- 230000002438 mitochondrial effect Effects 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 231100000350 mutagenesis Toxicity 0.000 description 1
- 230000036438 mutation frequency Effects 0.000 description 1
- 238000007789 sealing Methods 0.000 description 1
- 238000011451 sequencing strategy Methods 0.000 description 1
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 description 1
- 229910021642 ultra pure water Inorganic materials 0.000 description 1
- 239000012498 ultrapure water Substances 0.000 description 1
- 238000011144 upstream manufacturing Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
- C07H21/04—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B40/00—Libraries per se, e.g. arrays, mixtures
- C40B40/04—Libraries containing only organic compounds
- C40B40/06—Libraries containing nucleotides or polynucleotides, or derivatives thereof
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B50/00—Methods of creating libraries, e.g. combinatorial synthesis
- C40B50/06—Biochemical methods, e.g. using enzymes or whole viable microorganisms
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Biochemistry (AREA)
- Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Genetics & Genomics (AREA)
- Analytical Chemistry (AREA)
- Microbiology (AREA)
- General Health & Medical Sciences (AREA)
- Immunology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Medicinal Chemistry (AREA)
- Pathology (AREA)
- Hospice & Palliative Care (AREA)
- Oncology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
提供一种用于检测微量变异的DNA标签,该标签具有选自下列至少之一的序列:(1)HHATHHHTCACCHHATHHH;或(2)HHHTAHHTAHHHTAHH,其中,H代表A、T或C。
Description
PCT国内申请,说明书已公开。
Claims (19)
- PCT国内申请,权利要求书已公开。
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202310265316.2A CN116121243A (zh) | 2017-04-27 | 2017-04-27 | Dna标签及其应用 |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
PCT/CN2017/082281 WO2018195878A1 (zh) | 2017-04-27 | 2017-04-27 | Dna标签及其应用 |
Related Child Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202310265316.2A Division CN116121243A (zh) | 2017-04-27 | 2017-04-27 | Dna标签及其应用 |
Publications (2)
Publication Number | Publication Date |
---|---|
CN110168087A true CN110168087A (zh) | 2019-08-23 |
CN110168087B CN110168087B (zh) | 2023-11-14 |
Family
ID=63917812
Family Applications (2)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202310265316.2A Pending CN116121243A (zh) | 2017-04-27 | 2017-04-27 | Dna标签及其应用 |
CN201780083033.9A Active CN110168087B (zh) | 2017-04-27 | 2017-04-27 | Dna标签及其应用 |
Family Applications Before (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202310265316.2A Pending CN116121243A (zh) | 2017-04-27 | 2017-04-27 | Dna标签及其应用 |
Country Status (2)
Country | Link |
---|---|
CN (2) | CN116121243A (zh) |
WO (1) | WO2018195878A1 (zh) |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2012008831A1 (en) * | 2010-07-13 | 2012-01-19 | Keygene N.V. | Simplified de novo physical map generation from clone libraries |
CN104946639A (zh) * | 2015-07-01 | 2015-09-30 | 益善生物技术股份有限公司 | 构建基因突变测序文库的引物和方法以及试剂盒 |
CN106048009A (zh) * | 2016-06-03 | 2016-10-26 | 人和未来生物科技(长沙)有限公司 | 一种用于超低频基因突变检测的标签接头及其应用 |
Family Cites Families (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP3058091B1 (en) * | 2013-10-18 | 2020-03-25 | The Broad Institute, Inc. | Spatial and cellular mapping of biomolecules in situ by high-throughput sequencing |
JP6608368B2 (ja) * | 2013-12-30 | 2019-11-20 | アトレカ インコーポレイテッド | 核酸バーコードを用いた単一細胞と関連づけられた核酸の分析方法 |
US11339390B2 (en) * | 2015-09-11 | 2022-05-24 | The Broad Institute, Inc. | DNA microscopy methods |
-
2017
- 2017-04-27 CN CN202310265316.2A patent/CN116121243A/zh active Pending
- 2017-04-27 WO PCT/CN2017/082281 patent/WO2018195878A1/zh active Application Filing
- 2017-04-27 CN CN201780083033.9A patent/CN110168087B/zh active Active
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2012008831A1 (en) * | 2010-07-13 | 2012-01-19 | Keygene N.V. | Simplified de novo physical map generation from clone libraries |
CN104946639A (zh) * | 2015-07-01 | 2015-09-30 | 益善生物技术股份有限公司 | 构建基因突变测序文库的引物和方法以及试剂盒 |
CN106048009A (zh) * | 2016-06-03 | 2016-10-26 | 人和未来生物科技(长沙)有限公司 | 一种用于超低频基因突变检测的标签接头及其应用 |
Also Published As
Publication number | Publication date |
---|---|
CN110168087B (zh) | 2023-11-14 |
WO2018195878A1 (zh) | 2018-11-01 |
CN116121243A (zh) | 2023-05-16 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
Salk et al. | Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations | |
US20210355537A1 (en) | Compositions and methods for identification of a duplicate sequencing read | |
AU2017290237B2 (en) | Differential tagging of RNA for preparation of a cell-free DNA/RNA sequencing library | |
CN105189748B (zh) | 测序免疫组库的方法 | |
CN105463585B (zh) | 基于单链dna分子构建测序文库的方法及其应用 | |
CN103060924B (zh) | 微量核酸样本的文库制备方法及其应用 | |
CN106048009B (zh) | 一种用于超低频基因突变检测的标签接头及其应用 | |
WO2016037416A1 (zh) | 泡状接头及其在核酸文库构建及测序中的应用 | |
CN101278058A (zh) | 使用高通量测序技术对复杂基因组测序的改良策略 | |
CN102758026B (zh) | 基于HiSeq测序技术检测乙型肝炎病毒分型和耐药基因的方法 | |
JP2018514207A (ja) | 特異的分子インデックス(umi)を有する冗長リードを用いたシーケンシングdna断片におけるエラーの抑制 | |
CN111808854B (zh) | 带有分子条码的平衡接头及快速构建转录组文库的方法 | |
CN108753954B (zh) | 痴呆相关基因的捕获探针组、试剂盒、文库构建方法和用途 | |
CN105899680A (zh) | 核酸探针和检测基因组片段的方法 | |
CN109971827A (zh) | 血浆dna的建库方法和建库试剂盒 | |
US20180223350A1 (en) | Duplex adapters and duplex sequencing | |
WO2017202389A1 (zh) | 一种适用于超微量dna测序的接头及其应用 | |
CN108103164A (zh) | 一种利用多重荧光竞争性pcr检测拷贝数变异的方法 | |
WO2020007089A1 (zh) | 一种同时检测多种肝癌常见突变的ctDNA文库构建和测序数据分析方法 | |
CN106520917A (zh) | 一种基因的大片段缺失/重复检测的方法 | |
CN107922966A (zh) | 用于核酸扩增的样品制备 | |
CN108359723B (zh) | 一种降低深度测序错误的方法 | |
CN109680054A (zh) | 一种低频dna突变的检测方法 | |
CN109825552A (zh) | 一种用于对目标区域进行富集的引物及方法 | |
CN105209637B (zh) | 非侵入性胎儿性别确定 |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |