CN110117595B - 一种特异性结合pdl1的核酸适配体及其应用 - Google Patents

一种特异性结合pdl1的核酸适配体及其应用 Download PDF

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CN110117595B
CN110117595B CN201910407453.9A CN201910407453A CN110117595B CN 110117595 B CN110117595 B CN 110117595B CN 201910407453 A CN201910407453 A CN 201910407453A CN 110117595 B CN110117595 B CN 110117595B
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唐东起
刘江
张文
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Abstract

本发明公开了一种特异性结合癌细胞表面PDL1蛋白分子的核酸适配体,其序列如SEQ ID NO:1所示及其在肿瘤检测方面和在促进T细胞对肿瘤细胞杀伤的应用;本发明的核酸适配体能与肿瘤细胞表面PDL1蛋白特异性结合,亲和力高,单链寡核苷酸只识别与其互补的空间结构,几乎可以完全避免非特异性结合;本发明的核酸适配体合成成本低,采用SELEX筛选技术可以实现自动化,并且筛选出的核酸适配体经化学合成纯度高,准确度与重复性好。

Description

一种特异性结合PDL1的核酸适配体及其应用
技术领域
本发明涉及生物技术领域,具体说是一种特异性结合PDL1的核酸适配体及其应用。
背景技术
程序性死亡受体1(programmed death 1,PD-1)是T细胞表面的跨膜受体,参与细胞的凋亡,PD1与PDL1(PD-1ligand1,PD-L1)和PDL2(PD-1ligand2,PD-L2)配体相互作用抑制T细胞的增殖,PDL1、DPL2主要表达在抗原递呈细胞中(如DC细胞、巨噬细胞)。研究发现,多种肿瘤细胞高表达PDL1,如多发性骨髓瘤、黑色素瘤、非小细胞肺癌、卵巢癌、肾癌等。肿瘤细胞在多种因子作用下高表达PDL1,与T细胞表面的PD1分子相互作用,抑制T细胞的活化与增殖,进而引起免疫逃逸现象。同时诸多研究证实,癌组织内PDL1蛋白的表达水平的升高明显降低病人的预后与存活率,因此有针对的阻断PD1/PDL1信号通路,能有效增强T细胞对肿瘤细胞的杀伤和肿瘤的治疗效果。
核酸适配体(Aptamer)是一段DNA,通常是利用体外筛选技术——指数富集的配体***进化技术(Systematic evolution of ligands by exponential enrichment,SELEX),从核酸分子文库中得到的寡核苷酸片段。核酸适配体能与多种目标物质高特异性、高选择性地结合,因此被广泛应用于生物传感器领域,当核酸适配体与目标物质发生特异性结合时,核酸适配体自身的构型会随之发生变化。传统的抗原抗体反应灵敏度和特异性均较好,酶联免疫反应在各种生物分子的探测中发挥着举足轻重的作用,但是蛋白质作为探针分子,容易受pH、温度等环境因素影响而变性且合成价格昂贵,适配体由DNA或RNA构成(主要是DNA),比蛋白质体积更小,稳定性更好,在未来,适配体有望取代酶联免疫反应,成为各种化学分子探测的有力武器。
发明内容
为解决上述问题,本发明的目的是提供一种特异性结合PDL1的核酸适配体及其应用。
本发明为实现上述目的,通过以下技术方案实现:
一种特异性结合癌细胞表面PDL1蛋白分子的核酸适配体,其序列如SEQ ID NO:1所示。
本发明还包括一种特异性结合癌细胞表面PDL1蛋白分子的核酸适配体在肿瘤检测方面的应用。
本发明还包括一种特异性结合癌细胞表面PDL1蛋白分子的核酸适配体在促进T细胞对肿瘤细胞杀伤的应用。
优选的应用,所述肿瘤为肺癌、多发性骨髓瘤、肾癌和黑色素瘤。
本发明相比现有技术具有以下优点:
本发明的核酸适配体能与肿瘤细胞表面PDL1蛋白特异性结合,亲和力高,单链寡核苷酸只识别与其互补的空间结构,几乎可以完全避免非特异性结合;本发明的核酸适配体合成成本低,采用SELEX筛选技术可以实现自动化,并且筛选出的核酸适配体经化学合成纯度高,准确度与重复性好。
附图说明
图1为特异性结合PDL1的核酸适配体制备过程的流程示意图;
图2为流式细胞仪检测各组细胞中PE荧光的强度的示意图;
图3为2号aptamer和无意aptamer分别与人多发性骨髓瘤细胞系RPMI8226和L363细胞孵育的荧光强度示意图;
图4为2号aptamer与RPMI8226细胞和L363细胞的KD值图;
图5为显微镜下2号aptamer和对照组aptamer与肾癌组织切片的识别和结合的结果示意图;
图6为显微镜下2号aptamer对肺癌细胞和正常肺细胞的表面PDL1蛋白的识别与结合的荧光结果示意图。
具体实施方式
本发明的目的是提供一种特异性结合PDL1的核酸适配体及其应用,通过以下技术方案实现:
一种特异性结合癌细胞表面PDL1蛋白分子的核酸适配体,其序列如SEQ ID NO:1所示。
本发明还公开了特异性结合癌细胞表面PDL1蛋白分子的核酸适配体在肿瘤检测方面的应用。
本发明还公开了特异性结合癌细胞表面PDL1蛋白分子的核酸适配体在促进T细胞对肿瘤细胞杀伤的应用。
优选的应用,所述肿瘤为肺癌、多发性骨髓瘤、肾癌和黑色素瘤,多发性骨髓瘤细胞系如RPMI8226、L363等。
以下结合具体实施例来对本发明作进一步的描述。
实施例1
一种特异性结合癌细胞表面PDL1蛋白分子的核酸适配体,其序列如SEQ ID NO:1所示。
实施例2
1、如图1所示的流程示意图,通过人工合成,建立随机寡核苷酸库,以PDL1蛋白为靶蛋白,选择性分离出同靶蛋白特异性结合的核酸适配体(aptamer)。
2、RPMI8226属于PDL1阳性高表达细胞,L363属于阴性低表达细胞。采用消减SELEX筛选出与PDL1蛋白特异性结合的aptamer。消减SELEX筛选三个与PDL1蛋白特异性结合的aptamer,同时设计了一个无意aptamer;
无意核酸适配体aptamer序列SEQ ID NO:2:
acgggccaaatactcattcggtacgaccatgcgaccactgcttacgt;
1号核酸适配体aptamer序列SEQ ID NO:3:
acgggcctcacacatcaataattagccactgcctagagcgttcgcgt;
2号核酸适配体aptamer序列SEQ ID NO:1:
acgggcctctctgaacaaaggtattagacatcatgcgtgcccccagt;
3号核酸适配体aptamer序列SEQ ID NO:4:
acgggcacacatcactcgctgcccgtaagattattgaccaatcacgt;
消减SELEX筛选采用以下步骤:
⑴浓度10pmol/μL的随机寡核苷酸文库35微升加入到200微升选择性缓冲液内(Tris.HCl 50mM;KCl 5mM;NaCl 100mM;MgCl 1mM;pH7.4),加热99℃5min变性,立即置于0℃5min(加入过量的酵母tRNA与BSA降低背景);
⑵将上述溶液与1*105个RPMI8226细胞37℃混匀孵育30min,1000rpm离心5min,弃去上清,沉淀用选择性缓冲液溶解混匀,再1000rpm离心,如此反复6次;
⑶沉淀加入双蒸水,100℃加热10min,10000rpm离心5min,上清抽提核苷酸,20微升缓冲液溶解;
⑷将抽提出的核苷酸作为模板进行PCR扩增:
①反应体系:模板20微升;10*缓冲液10微升;dNTPs5微升;MgCL23.5微升;上下游引物各5微升;Taq酶5微升;加水至50微升;
②反应条件:94℃3min,20个循环:94℃50s,55℃50s,72℃50s,最后72℃5min。
⑸PCR产物经苯酚:氯仿抽提出核酸,溶解于缓冲液中;
⑹再按照⑴~⑸步骤反复10轮左右,筛选出适量核酸适配体,再经反筛选进一步排除非特异性结合;
⑺经10轮筛选后的寡核苷酸文库,以L363细胞作为负性靶细胞进行反筛选,PCR产物99℃加热5min然后立即置于0℃5min;
⑻先将1*105个L363细胞离心收集,弃掉上清,用上述液体与细胞沉淀在37℃混匀孵育30min,1000rpm离心5min,收集上清,继续用1*105个L363细胞37℃孵育30min,再1000rpm离心5min,收集上清,如此反复5次;
⑼将最后筛选出的核苷酸,用上下游测序引物扩增成dsDNA,回收纯化后连接到T载体,经筛选后随机挑选进行测序;
10)最终经11轮正筛与6轮反筛,确定三个aptamer以及合成了一个无意aptamer;
3、研究发现,多发性骨髓瘤细胞系RPMI8226在IFN-γ的刺激下,细胞表面的PDL1蛋白表达明显增加。基于此,我们来检测筛选出的aptamer对人PDL1蛋白的结合情况并将其与PDL1抗体相对照。将RPMI8226细胞系传代到一个二十四孔板中的十个孔,每孔3*105个细胞,随机选取五个孔,每孔加入1000IU的IFN-γ,37℃、5%CO2培养箱中孵育24h;
4、24h后,取出其中八个孔中的细胞(4个无刺激、4个IFN-γ刺激24h)分别加入已灭菌的1.5ml EP管内,1000rpm离心15min,弃掉上清,预冷的PBS洗涤一次,离心弃上清,将其和PE标记的不同aptamer(无意aptamer与1-3号aptamer)在100微升预冷PBS溶液中避光孵育20分钟,同时将剩余两个孔内的细胞收集并将它们分别与5微升的PE-PDL1抗体避光孵育20分钟。孵育完毕后,离心,弃上清,用200微升预冷PBS洗涤一次,再离心弃上清,加入600微升的预冷PBS,重悬细胞,流式细胞仪检测各组细胞中PE荧光的强度,如图2所示,已有研究报道RPMI8226在IFN-γ的刺激下,细胞表面PDL1蛋白的表达显著升高,PE-PDL1抗体与细胞共孵育也证实这一结果。我们还发现PE标记的2号aptamer显示的结果与PDL1抗体的结果最相近,提示我们2号aptamer与PDL1蛋白的结合与PDL1抗体几无差异。(*:与空白对照组相比p<0.05,**:与空白对照组相比p<0.01)。
5、选取人多发性骨髓瘤细胞系RPMI8226(PDL1高表达)和L363(PDL1低表达)分别培养在含有10%FBS的1640培养基内,37℃,5%CO2培养箱中培养。细胞在对数生长期时候,收集1*105的RPMI8226与L363,将其和一系列不同浓度(0、5、25、125、250、500、1000nM)FAM标记的2号aptamer在100微升结合缓冲液(含有0.5%BSA的PBS溶液)中37℃反应60分钟,PBS清洗两次,细胞上流式细胞仪检测:同等长度的无意aptamer作为随机对照。图3结果显示,1000nM的2号aptamer与PDL1高表达的RPMI8226细胞孵育的荧光强度明显强于随机对照组,而2号aptamer与低表达的L363细胞孵育的荧光强度与随机对照组几无差异。表明2号aptamer与PDL1高表达细胞结合性强。利用GraphPad Prism5软件计算2号aptamer与RPMI8226细胞和L363细胞的KD值,分析结果如图4所示,2号aptamer与RPMI8226细胞的KD值是68.45±5.36,L363细胞的KD值为189.35±51.34,2号aptamer与RPMI8226细胞的结合能力强于L363细胞;
6、采用临床肾癌病理切片来验证2号aptamer对癌组织表面PDL1蛋白的识别与结合。将石蜡包埋的正常肾组织与肾癌组织切片于65℃烤箱中烘烤1h,切片浸于二甲苯中脱蜡两次,每次10min;浸入无水乙醇两次,每次5min;切片依次经过梯度乙醇(90%、85%、70%乙醇各一次,每次3min),最后浸入PBS;微波修复法对切片进行抗原修复,待冷却至室温,使用PBS洗两次;随后使用山羊血清室温封闭1h;去除封闭液,分别加入HRP标记的2号aptamer于4℃孵育1h;洗涤缓冲液洗3次,每次5min;随后加入辣根酶标记链霉卵白素工作液室温孵育30min;经洗涤后,加入DAB显色液显色(镜下控制时间)。梯度酒精脱水,二甲苯透明,中性树胶封片,显微镜下观察。结果如图5所示,2号aptamer能够特异性识别切片肾癌细胞表面PDL1蛋白,但与正常的肾脏呈现较弱结合,对照组aptamer与肾癌组织内PDL1蛋白结合也比较弱,从而2号aptamer在临床上可用于肾癌细胞表面PDL1蛋白的检测和诊断。
7、采用临床非小细胞肺癌病理切片进一步验证2号aptamer与肺癌细胞表面PDL1蛋白的识别与结合。将石蜡包埋的正常肺与非小细胞肺癌组织病理切片于60℃烤箱中烘烤1.5h,切片浸于二甲苯中脱蜡两次,每次10-20min;浸入无水乙醇两次,每次5-10min;切片依次经过梯度乙醇(90%、85%、70%乙醇各一次,每次3-5min),最后浸入PBS;微波修复法对切片进行抗原修复,待冷却至室温,使用PBS洗两次;加入Cy5标记的2号aptamer于4℃孵育1-2小时,PBS洗两次,每次3-5min,防荧光淬灭封片剂封片,荧光显微镜下观察。结果如图6所示,非小细胞肺癌组织中,红色荧光强度明显高于正常肺组织,提示我们2号aptamer能识别与结合非小细胞肺癌组织表面的PDL1蛋白。
序列表
<110> 山东昂科诺生物科技有限公司
<120> 一种特异性结合PDL1 的核酸适配体及其应用
<141> 2019-05-10
<160> 4
<170> SIPOSequenceListing 1.0
<210> 1
<211> 47
<212> DNA
<213> 人工序列(Artificial Sequence)
<400> 1
acgggcctct ctgaacaaag gtattagaca tcatgcgtgc ccccagt 47
<210> 2
<211> 47
<212> DNA
<213> 人工序列(Artificial Sequence)
<400> 2
acgggccaaa tactcattcg gtacgaccat gcgaccactg cttacgt 47
<210> 3
<211> 47
<212> DNA
<213> 人工序列(Artificial Sequence)
<400> 3
acgggcctca cacatcaata attagccact gcctagagcg ttcgcgt 47
<210> 4
<211> 47
<212> DNA
<213> 人工序列(Artificial Sequence)
<400> 4
acgggcacac atcactcgct gcccgtaaga ttattgacca atcacgt 47

Claims (4)

1.一种特异性结合癌细胞表面PDL1蛋白分子的核酸适配体,其特征在于:其序列如SEQID NO:1所示。
2.权利要求1所述的特异性结合癌细胞表面PDL1蛋白分子的核酸适配体在制备肿瘤检测试剂中的应用。
3.权利要求1所述的特异性结合癌细胞表面PDL1蛋白分子的核酸适配体在制备促进T细胞对肿瘤细胞杀伤试剂中的应用。
4.根据权利要求2或3所述的应用,其特征在于:所述肿瘤为肺癌、多发性骨髓瘤、肾癌或黑色素瘤。
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