CN106434899A - Method, primers and kit for quickly detecting bacillus cereus at constant temperature - Google Patents

Method, primers and kit for quickly detecting bacillus cereus at constant temperature Download PDF

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CN106434899A
CN106434899A CN201610780460.XA CN201610780460A CN106434899A CN 106434899 A CN106434899 A CN 106434899A CN 201610780460 A CN201610780460 A CN 201610780460A CN 106434899 A CN106434899 A CN 106434899A
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primer
bacillus cereus
sequence
primer sets
sets
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CN106434899B (en
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贾犇
李雪玲
刘伟
韦朝春
李园园
陆长德
李亦学
曹永梅
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Shanghai Wang Wang Food Group Co Ltd
Shanghai Industrial Institute For Research And Technology
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Shanghai Industrial Institute For Research And Technology
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Abstract

The invention discloses a method, primer group and kit for quickly detecting bacillus cereus at constant temperature. The method comprises the steps that genomic DNA is extracted from a sample to be detected; a constant-temperature amplification reaction is conducted under an enzyme reaction system by taking the genomic DNA as a template and taking the primer group capable of amplifying specific sequences of the bacillus cereus as the primers; whether the bacillus cereus exists in the sample to be detected or not is determined by judging whether a reaction result is positive or not. The detection method has the advantages that the high sensitivity and the high specificity are achieved, the detection time is short, result determination is easy, operation is convenient and fast, the cost is low, and a wide application prospect is achieved.

Description

The method of fast constant temperature detection bacillus cereus, primer and kit
Technical field
The invention belongs to biological technical field, be specifically related to the method for a kind of fast constant temperature detection bacillus cereus, draw Thing and kit.
Background technology
Bacillus cereus (Bacillus cereus) is distributed widely in nature, is that a kind of common food-borne causes Sick bacterium.Clinically, the food poisoning that bacillus cereus causes can be divided into diarrhea-type and vomiting type two types, is respectively Caused by the diarrhoea toxin being produced by this bacterium and vomitoxin, the former is sensitive to heat and trypsase, thus can prevent;And the latter couple Thermally-stabilised, activity is not by pepsic interference, even if trace expression also can have bigger harm to human body, is difficult to take precautions against, Chang Yin Play fulminant food poisoning.Therefore, for the prevention of this bacterium with detect extremely important.
Tradition bacillus cereus detection method is longer due to the detection cycle, operates relative complex, and detection efficiency is relatively low, difficult With meet modern society for food-borne pathogens detection process high flux, high sensitivity, high specific, quick, want easily Ask.Recently as the development of nucleic acid molecules detection technique, researcher have also been developed the detection means such as PCR, but the party Method needs special detecting instrument, therefore, is not appropriate for being widely used in inside detection department of basic unit especially enterprise's production line The real-time on-site detection carrying out.In order to ensure food security, be badly in need of quick, simple, accurately method detect the wax in food Sample bacillus.
Loop-mediated isothermal amplification technique (loop-mediated isothermal amplification, LAMP) is in recent years A kind of novel constant-temperature nucleic acid amplification method growing up, this method is for 4 specific primers of 6 region designs of target sequence (including upstream and downstream outer primer F3 and B3 and upstream and downstream inner primer FIP and BIP, wherein FIP is made up of F1C and F2, and BIP is by B1C With B2 composition), utilize a kind of archaeal dna polymerase with strand-displacement activity, be incubated about 60min at constant temperature, core can be completed Acid amplified reaction, produces macroscopic byproduct of reaction-white magnesium pyrophosphate and precipitates (see document Notomi T, Okayama H,Masubuchi H,Yonekawa T,Watanabe K,Amino N,Hase T.Loop-mediated isothermal amplification of DNA,Nucleic Acids Research,2000Jun 15;28(12):E63).This technology has Not needing PCR instrument or quantitative real time PCR Instrument, can completing under constant temperature, naked eyes i.e. can determine whether reaction result, and highly sensitive, High specificity, reaction time is short, simple operation, low cost and other advantages.
Design of primers is a step the most key in LAMP technology, and Normal practice is by the spy generally acknowledging of certain biology to be detected Specific gene imports the online website (http of LAMP primer design://primerexplorer.jp/e), set relevant parameter raw Become primer sets.Bacillus cereus contains plasmid, therefore prior art such as patent of invention CN 101831493 B and CN 101402997 B are the design carrying out bacillus cereus LAMP primer based on target sequence on plasmid or chromosome respectively.But, Owing to plasmid exists unstability on copy number and genetic structure, and for for bacillus cereus dyeing in prior art The LAMP primer of the target sequence design on body there is also the inadequate problem of primer specificity, illustrates invention in table 1 of the present invention This problem that patent CN 101402997 B exists.It is to say, the bacillus cereus used in art methods Detection sequence actually not bacillus cereus institute is peculiar, i.e. be possible to non-bacillus cereus is regarded as wax mistakenly Sample bacillus.Therefore, need one in industry badly and be able to ensure that specific bacillus cereus detection method, meet base simultaneously Layer detection department, to quick, demand easily, can carry out real-time on-site detection easily inside enterprise's production line.
Content of the invention
The technical problem to be solved in the present invention is to overcome primer versatility present in existing LAMP technology design of primers With specific not enough defect, make full use of microbial genome sequence information abundant in current common data resource and phase The sequence analysis tools answered, is designed for the primer sets of specific recognition bacillus cereus, and forms Gao Ling on this basis Sensitivity, high specific detection kit.The present invention based in GenBank database microbial genome data resource (by On August 5th, 2013 data) carry out the design of bacillus cereus LAMP primer, provide a kind of fast constant temperature augmentation detection wax The method of sample bacillus, primer sets and kit.Use the detection method detection bacillus cereus of the present invention, there is Gao Ling Sensitivity and high specific, the detection time is short, and result judges simple, simple operation, the advantage of low cost.
The present invention proposes a kind of method of quick detection Bacillus cereus strain, said method comprising the steps of:
(1) from testing sample, genomic DNA is extracted;
(2) with described genomic DNA as template, so that drawing of bacillus cereus genome specificity base sequence can be expanded Thing group is primer, under enzyme reaction system, carries out isothermal amplification reactions;
(3) by judging whether reaction result is positive, determine in testing sample whether there is bacillus cereus.
The method of Constant Temperature Detection Bacillus cereus strain of the present invention, extracts genomic DNA, which is from testing sample Template, with bacillus cereus specificity amplification primer group as primer, carries out isothermal amplification reactions, then, by judging to react Whether result is positive, determines in testing sample whether there is bacillus cereus.Wherein, described enzyme reaction system include but not It is limited to DNA polymerase reaction system.
In the present invention, described bacillus cereus genome specificity base sequence be No. GI be 218895141 waxy 3193434~3194011bp bit sequence of bacillus.
In the present invention, the described primer sets that can expand bacillus cereus genome specificity base sequence is described gene A part for the nucleotide sequence of 3193434~3194011bp position of group (No. GI is 218895141) or one of its complementary strand Point.Wherein, described bacillus cereus genome specificity base sequence refers to that only bacillus cereus genome institute is peculiar , and the base sequence that other microbial genome do not comprise.
Wherein, the described primer sets that can expand bacillus cereus genome specific base sequence includes but is not limited to primer Group A, or be 55% and above primer sets with wall scroll sequence homology in this primer sets sequence or its complementary strand sequence.
Primer sets A:
Upstream outer primer F3_A:5’-AGGAACTATTAGAAAACGCG-3’(SEQ ID NO:1);
Downstream outer primer B3_A:5’-CCGGTTTAGATAATTCACGT-3’(SEQ ID NO:2);
Upstream inner primer FIP_A:5’-CTAGCGCCTTTGTATGTTCCTCGCAGAGGTTTTAGAAGTTC-3’(SEQ ID NO:3);
Downstream inner primer BIP_A:5’-CCACAGAACACAAATGTAACTCATGAATGTTTCTCTCCCTTTCCT-3’ (SEQ ID NO:4).
In the present invention, the described primer sets that can expand bacillus cereus genome specific base sequence can also include with In aforementioned each primer sets sequence or its complementary strand sequence, wall scroll sequence homology is 55% and above primer sets, this primer sets bag Include but be not limited to following primer sets B:
Primer sets B:
Upstream outer primer F3_B:5’-TAGAAAACGCGGGTATGA-3’(SEQ ID NO:5) (with primers F 3_A 5 '- AGGAACTATTAGAAAACGCG-3 ' homology is 55%);
Downstream outer primer B3_B:5’-CCGGTTTAGATAATTCACGT-3’(SEQ ID NO:6);
Upstream inner primer FIP_B:5’-CTAGCGCCTTTGTATGTTCCTCGCAGAGGTTTTAGAAGTT-3’(SEQ ID NO:7);
Downstream inner primer BIP_B:5’-CCACAGAACACAAATGTAACTCATGGTTTCTCTCCCTTTCCTTTT-3’ (SEQ ID NO:8).
In the inventive method, in one embodiment, the enzyme reaction system of described constant-temperature amplification is:1×Bst DNA Polymeric enzyme reaction buffer solution, 2-9mmol/L Mg2+(MgSO4Or MgCl2), 1.0-1.6mmol/L dNTP, 0.8-2.0 μm of ol/L FIP and BIP primer, F3 and the B3 primer of 0.15-0.3 μm of ol/L, 0.16-0.64U/ μ L Bst archaeal dna polymerase and 0- 1.5mol/L glycine betaine.For example, 1 × Bst DNA polymerase reaction buffer solution can select 1 × Thermopol reaction buffer, Comprise 20mmol/L Tris-HCl (pH 8.8), 10mmol/L KCl, 10mmol/L (NH4)2SO4,0.1%Triton X- 100,2mM MgSO4.MgSO in 1 × Bst DNA polymerase reaction buffer solution4With the magnesium ion Mg in enzyme reaction system2+Do Merging treatment.
In the inventive method, the response procedures of described isothermal amplification reactions hatches 10~90min, preferably for 1. 60~65 DEG C Ground is 10~60min;2. 80 DEG C terminate reaction 2~20min.The present invention does not limit and realizes this by other suitable response procedures Invention detection method.
In the inventive method, detection method includes but is not limited to electrophoresis detection, Turbidity measurement or color developing detection etc..Described electricity Swimming detection, preferably gel electrophoresis assays, can be Ago-Gel, it is also possible to be polyacrylamide gel.Electrophoresis detection In result, band as stepped in electrophoretogram expression characteristics, then testing sample is that bacillus cereus is positive, containing waxy gemma Bacillus;Band as stepped in electrophoretogram not expression characteristics, then testing sample is that bacillus cereus is negative.Described turbidity is examined Surveying, being to detect by an unaided eye or transmissometer detection turbidity, detection pipe occurs substantially muddy, then testing sample is bacillus cereus sun Property, containing bacillus cereus;As muddy in having no, then testing sample is that bacillus cereus is negative.Also can after centrifugal meat Whether eye is observed has precipitation at the bottom of reaction tube, if there being precipitation at the bottom of reaction tube, then testing sample is that bacillus cereus is positive, containing wax Sample bacillus;Do not precipitate as at the bottom of reaction tube, then testing sample is that bacillus cereus is negative.
Described color developing detection, is addition developer, including but not limited to calcein (50 μM) or SYBR in reaction tube Green I (30-50 ×), or hydroxynaphthol blue (i.e. HNB, 120-150 μM).Make when using calcein or SYBR Green I During for developer, as after reaction, color is orange, then testing sample is that bacillus cereus is negative;As after reaction, color is green Look, then testing sample is that bacillus cereus is positive, containing bacillus cereus.When employing hydroxynaphthol blue is as developer When, as after reaction, color is pansy, then testing sample is that bacillus cereus is negative;As after reaction, color is sky blue, Then testing sample is that bacillus cereus is positive.Described color developing detection, in addition to above by visually observing reaction result, it is possible to To carry out in real time or end point determination reaction result by detecting instrument, by the rational threshold value setting negative reaction, when to be measured When the result of example reaction is less than or equal to this threshold value, then testing sample is that bacillus cereus is negative;When testing sample reaction Result more than this threshold value when, then testing sample is that bacillus cereus is positive.Described detecting instrument includes but is not limited to fluorescence Spectrophotometer, quantitative real time PCR Instrument, constant-temperature amplification micro-fluidic chip foranalysis of nucleic acids instrument and the inspection of Genie II isothermal duplication fluorescence Examining system etc..
In described color developing detection, according to calcein or hydroxynaphthol blue as developer, can be anti-at constant-temperature amplification Added before should, it is also possible to add after isothermal amplification reactions completes, it is therefore preferable to add before isothermal amplification reactions, permissible The effective possibility reducing reaction pollution.According to SYBR Green I as developer, then complete in isothermal amplification reactions Add afterwards.According to calcein as developer, then while adding 50 μM of calceins in enzyme reaction system, add 0.6-1mM[Mn2+], for example, the MnCl of 0.6-1mM2.
Present invention also offers for the primer in the method for Constant Temperature Detection Bacillus cereus strain.Described primer includes Can expand the primer sets of bacillus cereus genome specific base sequence, it includes but is not limited to, and the sequence of described primer is No. GI be 218895141 bacillus cereus genome 3193434~3194011bp position nucleotide sequence a part or A part for its complementary strand.
Wherein, the described primer sets that can expand bacillus cereus genome specificity base sequence is selected from following primer Any one group of group, or selected from wall scroll sequence homology in described each primer sets sequence or its complementary strand sequence be 55% and with On arbitrary primer sets.Wherein, described primer sets includes but is not limited to following primer sets A.Described with aforementioned primer sets sequence or In its complementary strand sequence, wall scroll sequence homology is 55% and above primer sets includes but is not limited to following primer sets B.
Primer sets A:
Upstream outer primer F3_A:5’-AGGAACTATTAGAAAACGCG-3’;
Downstream outer primer B3_A:5’-CCGGTTTAGATAATTCACGT-3’;
Upstream inner primer FIP_A:5’-CTAGCGCCTTTGTATGTTCCTCGCAGAGGTTTTAGAAGTTC-3’;
Downstream inner primer BIP_A:5’-CCACAGAACACAAATGTAACTCATGAATGTTTCTCTCCCTTTCCT-3’;
Primer sets B:
Upstream outer primer F3_B:5’-TAGAAAACGCGGGTATGA-3’;
Downstream outer primer B3_B:5’-CCGGTTTAGATAATTCACGT-3’;
Upstream inner primer FIP_B:5’-CTAGCGCCTTTGTATGTTCCTCGCAGAGGTTTTAGAAGTT-3’;
Downstream inner primer BIP_B:5’-CCACAGAACACAAATGTAACTCATGGTTTCTCTCCCTTTCCTTTT-3’.
The present invention also provides a kind of for the kit in above-mentioned Constant Temperature Detection Bacillus cereus strain method, and it includes The described primer sets that can expand bacillus cereus genome specific base sequence.In kit of the present invention, described can expand wax The primer sets of sample bacillus gene group-specific base sequence, including but not limited to genome (No. GI:218895141) A part for a part for the nucleotide sequence of 3193434~3194011bp position or its complementary strand is as described primer sequence;Described Primer includes but is not limited to described primer sets A.Also including but not limited to single with aforementioned primer sequence or its complementary strand sequence Bar sequence homology is 55% and above primer sets is as primer;Including but not limited to primer sets B.
In kit of the present invention, also include Bst DNA polymerase buffer liquid, Bst archaeal dna polymerase, dNTP solution, Mg2+ (MgSO4Or MgCl2) and glycine betaine in one or more.In one embodiment, kit enzyme reaction system of the present invention Comprise 1 × Bst DNA polymerase reaction buffer solution, 2-9mmol/L Mg2+(MgSO4Or MgCl2), 1.0-1.6mmol/L FIP and the BIP primer of dNTP, 0.8-2.0 μm of ol/L, F3 and the B3 primer of 0.15-0.3 μm of ol/L, 0.16-0.64U/ μ L Bst Archaeal dna polymerase and the glycine betaine of 0-1.5mol/L.For example, 1 × Bst DNA polymerase reaction buffer solution can select 1 × Thermopol reaction buffer, comprises 20mmol/L Tris-HCl (pH 8.8), 10mmol/L KCl, 10mmol/L (NH4)2SO4,0.1%Triton X-100,2mM MgSO4.MgSO in 1 × Bst DNA polymerase reaction buffer solution4With enzyme reaction body Magnesium ion Mg in system2+Do merging treatment.
In kit of the present invention, also comprise positive control template.In one embodiment, described positive control template Include but is not limited to complete genome DNA, portion gene group DNA of bacillus cereus genomic DNA, or comprise waxy gemma bar Bacterium genomic DNA complete genome DNA or the carrier of portion gene group DNA.
In kit of the present invention, also comprising negative control template, described negative control template includes but is not limited to distilled water.
In kit of the present invention, also comprising developer, developer includes but is not limited to calcein, SYBR Green I or Hydroxynaphthol blue.When developer is calcein, kit also comprises [Mn2+], for example, MnCl2.
In kit of the present invention, also comprise distilled water.
In kit of the present invention, also comprise nucleic acid extraction reagent.
The invention allows for a kind of carrier, described carrier comprises any one group of primer selected from primer sets A, B.This carrier Owing to containing, there is the specific DNA sequence dna of bacillus cereus, therefore can be applicable to microbial taxonomy, Comparative genomic strategy The research fields such as, evolution, and the application such as microorganism detection.This carrier can be but not limited to plasmid vector (as PBR322, pUC18, pUC19, pBluescript M13, Ti-plasmids etc.), viral vectors (such as bacteriophage lambda etc.) and artificial coloring Body carrier (such as Bacterial artificial chromosome BAC, yeast artificial chromosome YAC etc.).For example, any one that comprises primer sets A is drawn The carrier pBR322-A of thing, the carrier pBR322-B etc. comprising any one primer of primer sets B.Comprise primer sets A arbitrarily Article one, carrier bacteriophage lambda-A, the carrier bacteriophage lambda-B etc. comprising any one primer of primer sets B of primer.
The invention allows for selected from primer sets A, the primer of any one group of B in Constant Temperature Detection bacillus cereus Application.
The invention allows for application in Constant Temperature Detection bacillus cereus for the described kit.
The invention allows for application in Constant Temperature Detection bacillus cereus for the described carrier.
The present invention is that technical field of food safety detection provides a kind of simple and quick sensitive detection bacillus cereus Method, primer/primer sets, detection reagent/kit, greater significance is had to the food security of China.The beneficial effect of the present invention Fruit includes:Use that bacillus cereus detection method of the present invention has high specificity, highly sensitive, the detection time is short, result is sentenced Calmly simply, simple operation, low cost and other advantages.Compared with conventional at present detection method, the constant-temperature amplification method that the present invention uses, can To carry out under constant temperature, only simple thermostat need to be used, it is not necessary to the expensive instrument in PCR experiment, it is not necessary to right Amplified production carries out the steps such as electrophoresis detection, thus, it is very suitable for being widely used in various circles of society and include basic unit's food security inspection Survey department promotes the use of, even if also can fully answer in the environment of molecular biology professional knowledge and skills base relative deficiency With.Above-mentioned each optimum condition can be combined based on common sense in the field, all belong to scope.
Brief description
Fig. 1 shows the specific of the embodiment of the present invention 7 bacillus cereus Constant Temperature Detection method.
Fig. 2 shows the sensitivity of the embodiment of the present invention 8 bacillus cereus detection method.
Detailed description of the invention
Being combined to lower specific embodiments and the drawings, the present invention is described in further detail, the protection content of the present invention It is not limited to following example.Under the spirit and scope without departing substantially from inventive concept, those skilled in the art it is conceivable that change Change and advantage is all included in the present invention, and with appending claims as protection domain.Implement the present invention process, Condition, reagent, experimental technique etc., outside the lower content mentioned specially, be universal knowledege and the common knowledge of this area, The present invention is not particularly limited content.
Embodiment 1-6 bacillus cereus isothermal reaction system and detection method
Detect according to following (1)~(3) step:
(1) extraction of genomic DNA
Bacillus cereus bacterial classification for detection derives from China General Microbiological DSMZ, numbering CGMCC 1.3760 (=ATCC 14579).Taking 1mL bacterial cultures uses the bacterial nucleic acid of Beijing Tian Gen bio-engineering corporation to extract examination Agent box extracts genomic DNA, DNA OD260/OD280Being 1.8, concentration is 5.36ng/ μ L.
(2) it with bacillus cereus genomic DNA to be measured as template, is respectively adopted the kit (being shown in Table 2, table 3) of autogamy, And according to condition described in table 3, prepare reaction system, with bacillus cereus specificity amplification primer group as primer, carry out perseverance Isothermal amplification reaction.Primer in embodiment 1~6 is respectively primer sets A, A, A, B, B, B.
(3) according to condition described in table 3, by electrophoresis detection, Turbidity measurement or color developing detection, amplification is carried out true Recognize.
As can be seen from Table 3, detection method and the primer sets being used and reaction system thereof can be right well Bacillus cereus specific fragment carries out expanding and obtains testing result.Therefore, present invention could apply in detection sample Whether contain bacillus cereus.
Embodiment 7 bacillus cereus specific detection
Collect non-bacillus cereus 28 strain (in table 4 and Fig. 1 1~4,6~29), by these bacterial strains and waxy gemma bar Bacteria strain (in table 4 and Fig. 1 5) is cultivated respectively, takes 1mL bacterium solution, uses kit IA, extracts DNA of bacteria, and with reference in fact Execute reaction system and the condition of example 1, carry out LAMP amplification (primer sets is A) respectively and add developer to observe.
Its testing result is as shown in table 4 and Fig. 1, and in Fig. 1,1~4 is respectively staphylococcus aureus, Staphylococcus aureus The golden yellow subspecies of bacterium, MRSE, Rhodococcus equi, 6~29 are respectively gill fungus sample bacillus, listeria monocytogenes, English Promise gram Listeria, listeria ivanovii, intestines salmonella intestines subspecies, Bacterium enteritidis, salmonella typhimurium, B-mode pair Salmonella typhi, shigella dysenteriae, Shigella bogdii, shigella flexneri, ETEC (A containing clostridium botulinum Type gene), pathogenic ETEC, Diarrheogenil Escherichia coli, product enterotoxin ETEC, enterotoxigenic large intestine Escherichia, hemorrhagic ETEC, yersinia enterocolitica, artificial tuberculosis yersinia genus, Vibrio vulnificus, pair Hemolysis vibrion, Freund vibrios and bacillus cereus, NTC:Negative control, 5:Bacillus cereus.In Fig. 1, only waxy bud Product after spore bacillus strain amplified reaction is rendered as bright green, is positive findings, as shown in No. 5 pipe.And other are non-waxy Product after Bacillus strain and negative control amplified reaction is all rendered as orange, be negative findings, as the 1st~No. 4,6~ Shown in No. 29 pipes and NTC negative control pipe.
By Fig. 1 and Biao 4 result it can be seen that detection kit of the present invention and detection method have good waxy gemma bar Bacteria strain is specific, i.e. the only Bacillus cereus strain amplification positive, and other non-Bacillus cereus strain are feminine gender.
Preparation detection kit, the primer using in kit is primer sets B, by above-mentioned method for detecting specificity, obtains Same testing result, i.e. the product after non-Bacillus cereus strain and negative control amplified reaction is negative findings, waxy Product after Bacillus strain amplified reaction is positive findings.
Additionally, according to method described in table 1, respectively theory analysis is specifically carried out to primer sets A~B, it was found that In the case that each bar primer at most allows three mispairing, each primer sets is up to 1 primer comparison to non-bacillus cereus On, show the specific all preferable of each primer sets.
Embodiment 8 sensitivity technique
As described in Example 2 extract bacterium CGMCC 1.3760 DNA, use kit IIB, and according to 1ng, 100pg, 10pg, 1pg, 100fg, 10fg DNA ladder degree adds reaction system, and other reaction conditions are with reference to the side of table 3 embodiment 2 Method carries out LAMP amplification (primer sets is A) respectively and adds developer to observe.As in figure 2 it is shown, 1-6 be respectively 1ng, 100pg, 10pg, 1pg, 100fg and 10fg, NTC:Negative control.The product that in Fig. 2,1ng, 100pg and 10pg are processed is rendered as bright Green, is positive findings, and 1pg, 100fg and 10fg are processed and the product of negative control is rendered as orange, is negative findings. Testing result shows, still can be detected in each reaction tube during minimum DNA containing 10pg (being approximately equivalent to 1700 bacteriums).
By above-mentioned detection method, other Step By Conditions ibid, use primer sets B, the DNA of as little as 10pg in each reaction tube Still can be detected.
The specific analysis of primer in the existing detection method of table 1 bacillus cereus
Note:The detection regional sequence of primer in patent CN 101402997 B is carried out in common data base resource Blast comparison, determine this detection region respectively with bacillus cereus and each bar primer region mispairing of non-bacillus cereus Base number.If primer region and non-bacillus cereus (including artificial tuberculosis yersinia genus and Yersinia pestis) bacterial strain Base mismatch number is fewer, shows that its matching degree is higher, specifically poorer.
The kit species of table 2 Constant Temperature Detection bacillus cereus and mainly comprise composition
Reaction condition in the method for table 3 embodiment 1-6 Constant Temperature Detection of the present invention bacillus cereus and testing result
Table 4 tests bacterial strain uses therefor and testing result
Note:a)CGMCC:China General Microbiological DSMZ, CICC:Chinese industrial Microbiological Culture Collection manages Center, CMCC:Chinese medicine bacteria culture preservation administrative center.b)+:Positive findings ,-:Negative findings.

Claims (15)

1. the method for a fast constant temperature detection bacillus cereus, it is characterised in that comprise the following steps:
(1) from testing sample, genomic DNA is extracted;
(2) with described genomic DNA as template, so that the primer sets of bacillus cereus genome specificity base sequence can be expanded As primer, under enzyme reaction system, carry out isothermal amplification reactions;
(3) by judging whether reaction result is positive, determine in testing sample whether there is bacillus cereus;
Wherein, described bacillus cereus genome specificity base sequence is the bacillus cereus that No. GI is 218895141 3193434~3194011bp bit sequence of genome.
2. the method for claim 1, it is characterised in that described can expand bacillus cereus genome specificity base The primer sets sequence of sequence is the core of bacillus cereus genome 3193434~3194011bp position that No. GI is 218895141 A part for acid sequence or a part for its complementary strand.
3. method as claimed in claim 2, it is characterised in that described can expand bacillus cereus genome specificity base The primer sets of sequence is primer sets A;Or be 55% with wall scroll sequence homology in described primer sets A sequence or its complementary strand sequence And any one group of above primer sets;
Primer sets A:
Upstream outer primer F3_A:5’-AGGAACTATTAGAAAACGCG-3’(SEQ ID NO:1);
Downstream outer primer B3_A:5’-CCGGTTTAGATAATTCACGT-3’(SEQ ID NO:2);
Upstream inner primer FIP_A:5’-CTAGCGCCTTTGTATGTTCCTCGCAGAGGTTTTAGAAGTTC-3’(SEQ ID NO:3);
Downstream inner primer BIP_A:5’-CCACAGAACACAAATGTAACTCATGAATGTTTCTCTCCCTTTCCT-3’(SEQ ID NO:4).
4. method as claimed in claim 3, it is characterised in that with wall scroll in described primer sets A sequence or its complementary strand sequence Sequence homology is 55% and above primer sets includes following primer sets B:
Primer sets B:
Upstream outer primer F3_B:5’-TAGAAAACGCGGGTATGA-3’(SEQ ID NO:5);
Downstream outer primer B3_B:5’-CCGGTTTAGATAATTCACGT-3’(SEQ ID NO:6);
Upstream inner primer FIP_B:5’-CTAGCGCCTTTGTATGTTCCTCGCAGAGGTTTTAGAAGTT-3’(SEQ ID NO: 7);
Downstream inner primer BIP_B:5’-CCACAGAACACAAATGTAACTCATGGTTTCTCTCCCTTTCCTTTT-3’(SEQ ID NO:8).
5. the method for claim 1, it is characterised in that in step (2), described enzyme reaction system includes:1×Bst DNA polymerase reaction buffer solution, 2-9mmol/L Mg2+, FIP and BIP of 1.0-1.6mmol/L dNTP, 0.8-2.0 μm of ol/L Primer, F3 and the B3 primer of 0.15-0.3 μm of ol/L, 0.16-0.64U/ μ L Bst archaeal dna polymerase, the beet of 0-1.5mol/L Alkali.
6. the method for claim 1, it is characterised in that the response procedures of described isothermal amplification reactions is:1. 60~65 DEG C hatch 10~90min;2. 80 DEG C terminate reaction 2~20min.
7. for the primer in Constant Temperature Detection bacillus cereus method as claimed in claim 1, it is characterised in that described primer Including the primer sets of bacillus cereus genome specificity base sequence can be expanded, it is 218895141 that its sequence is No. GI A part for the nucleotide sequence of 3193434~3194011bp position of bacillus cereus genome or a part for its complementary strand.
8. primer as claimed in claim 7, it is characterised in that described can expand bacillus cereus genome specificity base The primer sets of sequence is primer sets A;Or be 55% with wall scroll sequence homology in described primer sets A sequence or its complementary strand sequence And any one group of above primer sets;
Primer sets A:
Upstream outer primer F3_A:5’-AGGAACTATTAGAAAACGCG-3’;
Downstream outer primer B3_A:5’-CCGGTTTAGATAATTCACGT-3’;
Upstream inner primer FIP_A:5’-CTAGCGCCTTTGTATGTTCCTCGCAGAGGTTTTAGAAGTTC-3’;
Downstream inner primer BIP_A:5’-CCACAGAACACAAATGTAACTCATGAATGTTTCTCTCCCTTTCCT-3’.
9. primer as claimed in claim 8, it is characterised in that with wall scroll in described primer sets A sequence or its complementary strand sequence Sequence homology is 55% and above primer sets includes primer sets B:
Primer sets B:
Upstream outer primer F3_B:5’-TAGAAAACGCGGGTATGA-3’;
Downstream outer primer B3_B:5’-CCGGTTTAGATAATTCACGT-3’;
Upstream inner primer FIP_B:5’-CTAGCGCCTTTGTATGTTCCTCGCAGAGGTTTTAGAAGTT-3’;
Downstream inner primer BIP_B:5’-CCACAGAACACAAATGTAACTCATGGTTTCTCTCCCTTTCCTTTT-3’.
10. the kit for Constant Temperature Detection bacillus cereus, it is characterised in that described kit includes that right such as is wanted Seek the primer described in any one of 7~9.
11. kits as claimed in claim 10, it is characterised in that its also include Bst DNA polymerase reaction buffer solution, Bst archaeal dna polymerase, dNTP solution, Mg2+, one or more in glycine betaine.
12. 1 kinds of kits for Constant Temperature Detection bacillus cereus, it is characterised in that the enzyme reaction system of described kit Including:1 × Bst DNA polymerase reaction buffer solution, 2-9mmol/L Mg2+, 1.0-1.6mmol/L dNTP, 0.8-2.0 μm of ol/ FIP and the BIP primer of L, F3 and the B3 primer of 0.15-0.3 μm of ol/L, 0.16-0.64U/ μ L Bst archaeal dna polymerase, and 0- The glycine betaine of 1.5mol/L.
13. 1 kinds of carriers, it is characterised in that described carrier comprises the primer as described in any one of claim 7~9.
Application in Constant Temperature Detection bacillus cereus for 14. primers, it is characterised in that described primer is for such as claim 7~9 The primer described in any one.
15. kits as described in any one of claim 10~12 or carrier as claimed in claim 13 are in Constant Temperature Detection Application in bacillus cereus.
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