CA3062550A1 - Engineered ligase variants - Google Patents

Engineered ligase variants Download PDF

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Publication number
CA3062550A1
CA3062550A1 CA3062550A CA3062550A CA3062550A1 CA 3062550 A1 CA3062550 A1 CA 3062550A1 CA 3062550 A CA3062550 A CA 3062550A CA 3062550 A CA3062550 A CA 3062550A CA 3062550 A1 CA3062550 A1 CA 3062550A1
Authority
CA
Canada
Prior art keywords
lys
leu
glu
dna
ligase
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CA3062550A
Other languages
English (en)
French (fr)
Inventor
Mathew G. Miller
Jonathan VROOM
Nikki DELLAS
Donald S. Baskerville
Sandy M. Gomes
David ELGART
Judy Victoria Antonio Viduya
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Codexis Inc
Original Assignee
Codexis Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Codexis Inc filed Critical Codexis Inc
Publication of CA3062550A1 publication Critical patent/CA3062550A1/en
Pending legal-status Critical Current

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/93Ligases (6)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00Preparation of compounds containing saccharide radicals
    • C12P19/26Preparation of nitrogen-containing carbohydrates
    • C12P19/28N-glycosides
    • C12P19/30Nucleotides
    • C12P19/34Polynucleotides, e.g. nucleic acids, oligoribonucleotides
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y605/00Ligases forming phosphoric ester bonds (6.5)
    • C12Y605/01Ligases forming phosphoric ester bonds (6.5) forming phosphoric ester bonds (6.5.1)
    • C12Y605/01001DNA ligase (ATP) (6.5.1.1)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2521/00Reaction characterised by the enzymatic activity
    • C12Q2521/50Other enzymatic activities
    • C12Q2521/501Ligase
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2525/00Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
    • C12Q2525/10Modifications characterised by
    • C12Q2525/191Modifications characterised by incorporating an adaptor
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2535/00Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
    • C12Q2535/122Massive parallel sequencing

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Medicinal Chemistry (AREA)
  • General Chemical & Material Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Biomedical Technology (AREA)
  • Immunology (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Enzymes And Modification Thereof (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA3062550A 2017-05-08 2018-05-07 Engineered ligase variants Pending CA3062550A1 (en)

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
US201762503075P 2017-05-08 2017-05-08
US62/503,075 2017-05-08
US201762540734P 2017-08-03 2017-08-03
US62/540,734 2017-08-03
US201762587030P 2017-11-16 2017-11-16
US62/587,030 2017-11-16
PCT/US2018/031376 WO2018208665A1 (en) 2017-05-08 2018-05-07 Engineered ligase variants

Publications (1)

Publication Number Publication Date
CA3062550A1 true CA3062550A1 (en) 2018-11-15

Family

ID=64014642

Family Applications (1)

Application Number Title Priority Date Filing Date
CA3062550A Pending CA3062550A1 (en) 2017-05-08 2018-05-07 Engineered ligase variants

Country Status (15)

Country Link
US (1) US20180320162A1 (pl)
EP (2) EP3635101B1 (pl)
JP (2) JP7401902B2 (pl)
KR (1) KR20200003903A (pl)
CN (1) CN110914415A (pl)
AU (1) AU2018266606A1 (pl)
BR (1) BR112019023337A2 (pl)
CA (1) CA3062550A1 (pl)
DK (1) DK3635101T3 (pl)
ES (1) ES2887078T3 (pl)
HU (1) HUE055411T2 (pl)
MX (1) MX2019013289A (pl)
PL (1) PL3635101T3 (pl)
SG (1) SG11201909957TA (pl)
WO (1) WO2018208665A1 (pl)

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* Cited by examiner, † Cited by third party
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US10837009B1 (en) 2017-12-22 2020-11-17 New England Biolabs, Inc. DNA ligase variants
CN113874521A (zh) 2019-01-06 2021-12-31 10X基因组学有限公司 用于富集条形码的方法和***
WO2020198532A1 (en) 2019-03-27 2020-10-01 10X Genomics, Inc. Systems and methods for processing rna from cells
CN113774032B (zh) * 2021-11-12 2022-03-01 翌圣生物科技(上海)股份有限公司 重组t4连接酶突变体、编码dna及ngs建库方法
US11685913B1 (en) * 2022-02-18 2023-06-27 Abclonal Science, Inc. T4 DNA ligase variants with increased resistance to salt
US11788082B2 (en) * 2022-02-22 2023-10-17 Abclonal Science, Inc. T4 DNA ligase variants with increased thermostability
US20230295707A1 (en) * 2022-03-21 2023-09-21 Abclonal Science, Inc. T4 DNA Ligase Variants with Increased Ligation Efficiency
WO2024123733A1 (en) * 2022-12-05 2024-06-13 Twist Bioscience Corporation Enzymes for library preparation
CN115896047B (zh) * 2022-12-12 2023-06-16 南京诺唯赞生物科技股份有限公司 重组t4 dna连接酶突变体、融合蛋白及其应用
CN116218953A (zh) * 2023-01-03 2023-06-06 南京诺唯赞生物科技股份有限公司 一种连接核酸片段与接头的方法
CN117946985B (zh) * 2024-03-27 2024-05-28 翌圣生物科技(上海)股份有限公司 突变型t4 dna连接酶、试剂盒及其在文库构建中的应用

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Also Published As

Publication number Publication date
MX2019013289A (es) 2020-01-15
EP3635101B1 (en) 2021-08-18
EP3957723A3 (en) 2022-04-20
JP2020518278A (ja) 2020-06-25
SG11201909957TA (en) 2019-11-28
ES2887078T3 (es) 2021-12-21
BR112019023337A2 (pt) 2020-06-16
WO2018208665A1 (en) 2018-11-15
PL3635101T3 (pl) 2021-12-13
JP2023166579A (ja) 2023-11-21
KR20200003903A (ko) 2020-01-10
EP3635101A1 (en) 2020-04-15
US20180320162A1 (en) 2018-11-08
CN110914415A (zh) 2020-03-24
JP7401902B2 (ja) 2023-12-20
AU2018266606A1 (en) 2019-11-14
EP3957723A2 (en) 2022-02-23
DK3635101T3 (da) 2021-09-20
HUE055411T2 (hu) 2021-11-29
EP3635101A4 (en) 2020-09-30

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