BR112017023418A2 - desbloqueio ortogonal de nucleotídeos - Google Patents

desbloqueio ortogonal de nucleotídeos

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Publication number
BR112017023418A2
BR112017023418A2 BR112017023418-1A BR112017023418A BR112017023418A2 BR 112017023418 A2 BR112017023418 A2 BR 112017023418A2 BR 112017023418 A BR112017023418 A BR 112017023418A BR 112017023418 A2 BR112017023418 A2 BR 112017023418A2
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BR
Brazil
Prior art keywords
different
site
primer extension
extension products
unlocking
Prior art date
Application number
BR112017023418-1A
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English (en)
Inventor
H. Trepagnier Eliane
Khurana Tarun
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Illumina, Inc.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Illumina, Inc. filed Critical Illumina, Inc.
Publication of BR112017023418A2 publication Critical patent/BR112017023418A2/pt

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2523/00—Reactions characterised by treatment of reaction samples
    • C12Q2523/10—Characterised by chemical treatment
    • C12Q2523/107—Chemical cleaving agents
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2523/00—Reactions characterised by treatment of reaction samples
    • C12Q2523/30—Characterised by physical treatment
    • C12Q2523/313—Irradiation, e.g. UV irradiation
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
    • C12Q2525/10—Modifications characterised by
    • C12Q2525/155—Modifications characterised by incorporating/generating a new priming site
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
    • C12Q2525/10—Modifications characterised by
    • C12Q2525/186—Modifications characterised by incorporating a non-extendable or blocking moiety

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  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Analytical Chemistry (AREA)
  • Molecular Biology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Genetics & Genomics (AREA)
  • Immunology (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • General Engineering & Computer Science (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Ultra Sonic Daignosis Equipment (AREA)
  • Compounds Of Unknown Constitution (AREA)
  • Medicines Containing Material From Animals Or Micro-Organisms (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Chemical & Material Sciences (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Toxicology (AREA)

Abstract

a presente invenção refere-se a um processo incluindo as etapas de: (a) fornecer um conjunto de sítios, em que cada sítio compreende uma mistura de diferentes moldes de ácidos nucleicos; (b) estender os iniciadores hibridizados para os diferentes moldes de ácido nucleico em cada um dos sítios com diferentes análogos de nucleotídeo com diferentes porções de bloqueio reversíveis, respectivamente, desse modo produzindo produtos de extensão de iniciador diferentes em cada sítio; (c) detectar os produtos de extensão de iniciador diferentes para distinguir os diferentes análogos de nucleotídeo em cada sítio; e (d) remover as diferentes porções de bloqueio reversíveis dos produtos de extensão de iniciador em cada um dos sítios utilizando um primeiro tratamento que é seletivo para uma primeira das diferentes porções de bloqueio reversíveis e um segundo tratamento que é seletivo para uma segunda das diferentes porções de bloqueio reversíveis.
BR112017023418-1A 2015-07-30 2016-07-08 desbloqueio ortogonal de nucleotídeos BR112017023418A2 (pt)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201562198947P 2015-07-30 2015-07-30
US62/198,947 2015-07-30
PCT/US2016/041568 WO2017019278A1 (en) 2015-07-30 2016-07-08 Orthogonal deblocking of nucleotides

Publications (1)

Publication Number Publication Date
BR112017023418A2 true BR112017023418A2 (pt) 2018-07-24

Family

ID=56418645

Family Applications (1)

Application Number Title Priority Date Filing Date
BR112017023418-1A BR112017023418A2 (pt) 2015-07-30 2016-07-08 desbloqueio ortogonal de nucleotídeos

Country Status (14)

Country Link
US (2) US11155864B2 (pt)
EP (1) EP3329007B1 (pt)
JP (1) JP6712606B2 (pt)
KR (1) KR102189965B1 (pt)
CN (2) CN107771223B (pt)
AU (1) AU2016298541B2 (pt)
BR (1) BR112017023418A2 (pt)
CA (1) CA2984702A1 (pt)
DK (1) DK3329007T3 (pt)
ES (1) ES2864677T3 (pt)
HK (1) HK1249148A1 (pt)
IL (3) IL294145B2 (pt)
RU (1) RU2742955C2 (pt)
WO (1) WO2017019278A1 (pt)

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Also Published As

Publication number Publication date
EP3329007B1 (en) 2021-02-24
CN107771223A (zh) 2018-03-06
CN107771223B (zh) 2022-03-22
IL305561A (en) 2023-10-01
DK3329007T3 (da) 2021-04-26
US20180312917A1 (en) 2018-11-01
US11155864B2 (en) 2021-10-26
KR102189965B1 (ko) 2020-12-11
JP6712606B2 (ja) 2020-06-24
CA2984702A1 (en) 2017-02-02
IL255445A0 (en) 2017-12-31
WO2017019278A1 (en) 2017-02-02
HK1249148A1 (zh) 2018-10-26
AU2016298541A1 (en) 2017-11-16
RU2742955C2 (ru) 2021-02-12
RU2017137776A3 (pt) 2019-08-29
IL255445B (en) 2022-07-01
IL294145B1 (en) 2023-10-01
IL294145B2 (en) 2024-02-01
US20220033898A1 (en) 2022-02-03
ES2864677T3 (es) 2021-10-14
JP2018518947A (ja) 2018-07-19
KR20180014054A (ko) 2018-02-07
AU2016298541B2 (en) 2019-10-31
CN114634976A (zh) 2022-06-17
RU2017137776A (ru) 2019-08-29
EP3329007A1 (en) 2018-06-06
IL294145A (en) 2022-08-01

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