ZA200405901B - Expansion of renewable stem cell populations - Google Patents
Expansion of renewable stem cell populations Download PDFInfo
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- ZA200405901B ZA200405901B ZA200405901A ZA200405901A ZA200405901B ZA 200405901 B ZA200405901 B ZA 200405901B ZA 200405901 A ZA200405901 A ZA 200405901A ZA 200405901 A ZA200405901 A ZA 200405901A ZA 200405901 B ZA200405901 B ZA 200405901B
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- stem cells
- cells
- acid
- receptor
- tetrahydro
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Description
EXPANSION OF RENEWABLE STEM CELL POPULATIONS
The present invention relates to methods of expansion of renewable stem cells, to expanded populations of renewable stem cells and to their uses. In particular, the present invention relates to methods of reducing the expression and/or activity of €€D38. In one embodiment, ex-vivo and/or in-vivo stem cell expansion is achie ved according to the present invention by downregulation of retinoic acid receptor (RAR), retinoid X receptor (RXR), and/or Vitamin D receptor (VDR) signaling, either at the protein level via RAR, RXR and/or VDR antagonists or at the expression level via genetic engineering techniques, such as small interfering RNA (siRNA) techniques. In another embodiment, ex-vivo and/or in-vivo stem cell expansion is achieved according to the present invention by dowrnregulation of CD38 either at the protein level via CD38 1s inhibitors, such as, for example, nicotinamide, or at the expression level via genetic engineering techniques, such as small interfering RNA (siRNA) techniques. The present invention further relates to therapeutic applications in which these methods and/or the expanded stem cells populations obtained thereby are utilized.
An increasing need for ex-vivo cultures of hematopoietic and non- hematopoietic stexn cells has arisen, in particular for purposes such as stem cell expansion and retroviral-mediated gene transduction. Methods for generating ex-vivo cultures o f stem cells to date, however, result in a rapid decline in stem cell population activity, further resulting in a markedly impaired self renewal potential and diminished transplantability of the cultured cell populations. The ’ need to improve such methods is obvious. Additionally, applications in gene therapy using -etroviral vectors necessitate the use of proliferating hematopoietic stem cells, yet require that these cells remain undifferentiated while in culture, in order to maintain long-term expression of the transduced gene. Thus, the ability to maintain ex-vivo cultures of hematopoietic and non-hematopoietic stem cell populations with lomg-term, self-renewal capacity is of critical importance for a wide array of medic al therapeutic applications. : Presently, expansion of renewable stem cells have been achieved either by growing the stem cells over a feeder layer of fibroblast cells, or by growing ~~ s the cells in the presence of the early acting cytokines thrombopoietin (TPO), interleukin-6 (IL-6), an FLT-3 ligand and stem cell factor (SCF) (Madlambayan
GJ et al (2001) J Hematother Stem Cell Res 10: 481, Punzel M et al (1999)
Leukemia 13: 92, and Lange W et al (1996) Leukemia 10: 943). While expanding stem cells over a feeder layer results im vast, substantially endless cell expansion, expanding stem cells without a feeder layer, in the presence of the early acting cytokines, results in an elevated degree of differentiation (see controls described in the Examples section and Leslie NR et al (Blood (1998) 92: 4798), Petzer AL et al (1996) J Exp Med Jun 183: 2551, Kawa Y et al (2000) Pigment Cell Res 8: 73).
In any case, using present day technology, stem cells cannot be expanded unless first substantially enriched or isolated to homogeneity.
The art presently fails to teach an efficient method for expansion of renewable stem cells without a feeder layer.
CD38 is a member of an emerging family of cytosolic and membrane-bound enzymes whose substrate is nicotinamide adenine dinucleotide (NAD), a coenzyme ubiquitously distributed in nature. In human,
CD38 is a 45 kDa type II trans-membrane glyco protein. Recently, it has been demonstrated that CD38 is a multifunctional erzyme that exerts both NAD" glycohydrolase activity and ADP-ribosyl cyclase activity and is thus able to produce nicotinamide, ADP-ribose (ADPR), cyclic-ADPR (cADFR) and nicotinic acid adenine dinucleotide phosphate ¢NAADP) from its substrates . (Howard et al., 1993 Science 252:1056-1059; Lee et al., 1999 Biol. Chem. 380;785-793). The soluble domain of human CI»38 catalyzes the conversion of
NAD" to cyclic ADP-ribose and to ADP-ribose via a common covalent intermediate (Sauvee, A. A., Deng, H. T., Angelletti, R. H., and Schramm, V". L. (2000) J. Am. Cherm. Soc. 122, 7855-7859). ’ However, it was further found that CD38 is not characterized only by multi enzymatic activity but is further able to mobilize calcium, to transduce signals and to adhere to hyaluronan and to other ligands. Interaction wwith
CD38 on various leukocyte subpopulation has profound though diverse effects on their life-span (Funaro A, Malavasi F J Biol Regul Homeost Agents 1 999
Jan-Mar;13(1):54-61 Human CD38, a surface receptor, an enzyme, an adhesion molecule and not a. simple marker).
CD38 is widely expressed in both hematopoietic and non hematopoietically-«derived cells. Homologues of CD38 have also been found to be expressed in mammalian stromal cells (Bst-1) and in cells isolated from the invertebrate Aplysia californica (Prasad GS, 1996, nature Structural Biol 3:957-964).
Two of the metabolites produced by CD38, cADPR and NAADP, have been shown to induce the release of intracellular calcium in cells isolated £rom tissues of plants, imvertebrates and mammals, suggesting that these metabolites may be global regulators of calcium responses (Lee et al., 1999 Biol. Chem. 380:785-793). Both cADPR and NAADP are known to induce calcium rel ease from calcium stores that are distinct from those controlled by Ip’ receptors (Clapper, DL et al ., 1987, J. Biological Chem. 262:9561-9568).
Hence, CD»38, being the best-characterized mammalian ADP-rib>osyl cyclase, is postulated to be an important source of cyclic ADP-ribose in vivo.
Nucleoplasenic calcium ions (Ca*® influence highly important nuclear 2s functions such as gene transcription, apoptosis, DNA repair, topoisomerase activation and polymerase unfolding. Although both inositol trisphosphate . receptors and ryan odine receptors, which are types of Ca*? channel, are present in the nuclear mernbrane, their role in the homeostasis of nuclear Ca is still unclear.
It was found that CD38/ADP -ribosyl cyclase has its catalytic site within the nucleoplasm and hence it catalyses the intranuclear cyclization of NAD’, to i produce nucleoplasmic cADPR. The latter activates ryanodine receptors of the ) inner nuclear membrane to trigger nucleoplasmic Ca? release (Adebanjo OA et al Nat Cell Biol 1999 Nov;1(7):409-14 A new function for
CD38/ADP-ribosyl cyclase in nuclear Ca2+ homeostasis).
It was further found that agonists of ryanodine receptors sensitize cADPR-mediated calcium release and antagonists of ryanodine receptors block cADPR-dependent calcium release (Galione A et al, 1991, Science 253:143-146). Thus, it has been proposed that cADPR is likely to regulate calcium responses in tissues such as muscle and pancreas, where ryanodine receptors are expressed (Day et al_, 2000 Parasitol 120:417-422; Silva et al, 1998, Biochem. Pharmacol 56:997-1003). It has been also shown that in mammalian smooth muscle cells, the calcium release in response to acetylcholine can be blocked not only with ryanodine receptor antagonists, but also with specific antagonists of cADPR such as 8-NH,-cADPR or 8-Br-cADPR (Guse, A H, 1999, Cell. Signal. 11:309-316). These findings, as well as others, indicate that ryanodine receptor agonists/antagonists such as cADPR can regulate calcium responses in cells isolated from diverse species.
As is discussed hereinabove, self-renewal of hemopoietic stem and progenitor cells (HPC), both in vivo and in vitro, is limited by cell differentiation. Differentiation in the hematopoietic system involves, among other changes, altered expression of surface antigens (Sieff C, Bicknell D,
Caine G, Robinson J, Lam G, Greaves MF (1982) Changes in cell surface antigen expression during hematopoietic differentiation. Blood 60:703). In normal human, most of the hematopoietic pluripotent stem cells and the lineage . committed progenitor cells are CD34+. The majority of cells are
CD34+CD38+, with a minority of cells (< 10 %) being CD34+CD38-. The
CD34+CD38- phenotype appears to identify the most immature hematopoietic cells, which are capable of self-remewal and multilineage differentiation. The
CD34+CID38- cell fraction contains more long-term culture initiating cells (LTC-IC) pre-CFU and exhibits longer maintenance of their phenotype and ° delayed pxoliferative response to cytokines as compared with CD34+CD38+ i cells. CID»34+CD38- can give rise to lymphoid and myeloid cells in vitro and 5 have an enhanced capacity to repopulate SCID mice (Bhatia M, Wang JCY,
Kapp U, Bonnet D, Dick JE (1997) Purification of primitive human hematopoietic cells capable of repopulating immune-deficient mice. Proc Nail
Acad Sci WSA 94:5320). Moreover, in patients who received autologous blood cell transplantation, the number of CD34+CD38- cells infused correlated positively with the speed of hematopoietic recovery. In line with these functional features, CD34+CD38- cells have been shown to have detectable levels of t elomerase.
Recently, it has been reported that granulocytic differentiation of human
HL-60 cells (a committed cell line) can be induced by retinoic acid and is accomparmied by a massive expression of CD38. Concomitant with CD38 expressiom was the accumulation of cADPR, and both time courses preceded the onset of differentiation, suggesting a causal role for CD38. Comsistently, treatment of HL-60 cells with a permeant inhibitor of CD38, nicotinamide, inhibited Both the CD38 activity and differentiation. More specific bEockage of
CD38 expression was achieved by using morpholino antisense oligonucleotides targeting its mRNA, which produced a corresponding inhibition of differentiation as well (Munshi CB, Graeff R, Lee HC, J Biol Chem 2002 Dec 20;277(51):49453-8).
In view of the findings described above with respect to the effect of
CD38 on cADPR and ryanodine signal transduction pathways and herce on cell expansion: and differentiation, the present inventors have envisioned that by . modulating the expression and/or the activity of CD38, the expansion and differentiation of stem cells could be controlled. In particular, it was hypothesi zed that by reducing the expression and/or the activity of CID338, using agents that downregulate the expression of CD38 or inhibit the activity thereof,
expansion of renewable stem cells, devoid of differentiation, would be . achievable. ’ Nicotinamide (NA) is a water-soluble derivative of vitamin B, whose . physiological active forms are nicotinamide adenine dinucleotide s (NAD+/NADH) and nicotinamide adenine dinucleotide phosphate (NADP+/NADPH). The physi ological active forms of NA serve as coenzyme in a variety of important metabolic reactions. Nicotinamide is further known to inhibit the enzymatic activity of CD38, to thereby affect the cADPR signal transduction pathway, a featuwe which is demonstrated, for example, in the studies described hereinabove (see, for example, Munshi CB, Graeff R, Lee
HC, J Biol Chem 2002 Dec 20; 277(51):49453-8).
Hence, while conceiving the present invention, it was hypothesized that nicotinamide, as well as other agents known to inhibit the enzymatic activity of
CD38, can be utilized for expanding stem cell populations while inhibiting the differentiation of the stem cells. It was further hypothesized that other small molecules, which are capable of interfering, directly or indirectly, with the expression of CD38 can be similarly used.
Retinoic acid (RA), the natural acidic derivative of Vitamin A (retinol) is an important regulator of embryonic development and it also influences the growth and differentiation of a wide variety of adult cell types. The biological effects of RA are generally mmediated through their interaction with specific ligand-activated nuclear transcription factors, their cognate RA receptors (RARs). Receptors of the retinoic acid family comprise RARs, RXRs, Vitamin
D receptors (VDRs), thyroid hormone receptors (THRs) and others. When activated by specific ligands these receptors behave as transcription factors, controlling gene expression during embryonic and adult development. The . RAR and RXR families of receptors uniquely exhibit modular structures harboring distinct DNA-binding and ligand-binding domains. These receptors probably mediate their biologi cal effects by binding to regulatory elements (e.g.,
retinoic acid response elements, or RAREs) as RAR-RXR_ heterodimers that are present in the promoters of their specific target genes (1, 2, 3). : Retinoid receptors thus behave as ligand-dependent transcriptional regulators, repressing transcription in the absence of ligand and activating
S transcription in its presence. These divergent effects on transcription are mediated through the recruitment of co-regulators: un-liganded receptors bind corepressors (NCoR and SMRT) that are found within a complex exhibiting histone deacetylase (HDAC) activity, whereas liganded receptors recruit co-activators with histone acetylase activity (HATs). Chromatin remodeling may also be required, suggesting a hierarchy off promoter structure modifications in RA target genes carried out by rmultiple co-regulatory complexes.
The first retinoic acid receptor identified, designated RAR-alpha, modulates transcription of specific target genes in a manner which is ligand-dependent, as subsequently shown for many of the members of the steroid/thyroid hormone intracellular receptor superfamily. The endogenous ~ low-molecular-weight ligand, upon which the transcripti on-modulating activity of RAR-alpha depends, is all-trans-retinoic acid. Retinoic acid receptor-mediated changes in gene expression result in characteristic alterations in cellular phenotype, affecting multiple tissues. Additional RAR-alpha related genes have been identified, designated RAR-beta and RAR-gamma, and exhibit a high level of homology to RAR-alpha and each other (4, 5). The ligand-binding region of the three RAR subtype receptoTs has a primary amino acid sequence divergence of less than 15 %.
BS Similarly, additional members of the steroid/thyroid receptor superfamily ) responsive to retinoic acid have been identified (6), and have been designated as the retinoid X receptor (RXR) family. Like the RARs, the RXRs are also known to comprise at least three subtypes or isoforms, namely RXR-alpha,
RXR-beta, and RXR-gamma, with corresponding unique patterns of expression
Although both the RARs and RXRs bind the ligand all-trans-retinoic acid in vivo, the receptors differ in several important aspects. First, the RARs and ) RXRs significantly differ in their primary structure, especially regarding their ) ligand binding domains (e.g., alpha domains exhibit a mere 27 % shared amino acid identity). These structural differences manifest in their differing relative degrees of responsiveness to various Vitamin A metabolites and synthetic retinoids. Additionally, tissue distribution pattems are distinctly different for
RARs and RXRs. RARs and RXRs exhibit different target gene specificity.
One example is regarding the cellular retinal binding protein type II (CRBPII) and apolipoprotein Al proteins that confer responsiveness to RXR, but not
RAR. Furthermore, RAR has also been shown to repress RXR-mediated activation through the CRBPII RXR response element (8). These data indicate that the two separate retinoic acid responsive pathways are not simply redundant, but instead manifest a complex interplay.
Vitamin D (VitD) is an additional potent activator of one of the receptors belonging to the retinoid receptor superfamily. The nuclear hormone 1 alpha, 25-dihydroxyvitamin D (3) (1 alpha, 25 (OH) (2) D (3)) binds its cognate receptor (VDR) and acts as a transcription factor when in combined contact with the retinoid X receptor (RXR), coactivator proteins, and specific DNA binding sites (VDREs). Ligand-mediated conformational changes of the VDR comprise the molecular switch controlling nuclear 1 alpha, 25 (OH) (2) D (3), signaling events.
Cell-specific VDR antagonists reveal the exquisite control and regulation of the pleiotropic 1 alpha, 25 (OH) (2) D (3) endocrine system, with consequences in maintenance of calcium homeostasis, bone mineralization and other cellular functions. Antagonists to VitD were shown to act via the same mechanism: they selectively stabilize an antagonistic conformation of the ligand-binding domain of the VDR within VDR-RXR-VDRE complexes, inhibiting the interaction of the VDR with coactivator proteins and induction of transactivation. Interestingly, cells treated with VitD antagonists contain
VDR-RXR heterodimers in different conformations as compared to cells stimulated with VitD agonists (16).
Retinoic acid and VitD can cooperatively stimulate transcriptional events . involving a common DNA binding site or hormone response element (HRE).
Conversely, VDR/RXR heterodimers have been fourad to bind without defined polarity and in a transcriptionally unproductive manner to certain RA response elements, and under these circumstances Vitamin D inhibits the response to RA.
Although competition for binding to DNA may coentribute to this inhibitory response, titration of common coactivators by VDR also appears to be involved in this trans-repression. Therefore, the regulation of the transcriptional response to RA and VitD is dependent upon a complex combimatory pattern of interaction among the different receptors, co-activators (17) and their binding to the appropriate DNA binding sites.
In parallel to their function as transcriptional regulators, retinoid receptors such as RAR and RXR play important roles in regulating the growth and differentiation of a variety of cell-types, as well ( 18). RAR agonists such as all-trans-retinoic acid (ATRA) are predominantly known for their effects in inducing cell-differentiation, as seen in experiments utilizing malignant cancer cells and embryonic stem cells (19), where potent induction of terminal differentiation was evident. Cell differentiation is not an exclusive result, however, as RA has been shown to exhibit different effects on cultured hematopoietic cells, depending on their maturational state (20). While retinoids accelerated the growth and differentiation of ggranulocyte progenitors in cytokine-stimulated cultures of purified CD34" cells, use of stem cells produced : an opposite effect (42). Retinoid treatment has also been shown to inhibit differentiation of pre-adipose cells (43). : Whereas the RAR antagonist AGN 193109 exerted a positive effect on the differentiation of hematopoietic stem cells (41) the RAR agonist 4-[4-(4-ethylphenyl)dimethyl-chromen-ylJethynyl} -bsenzoic acid] functions in an opposing manner. Conversely, RAR antagonists h ave been shown to prevent granulocytic differentiation in experiments utilizing the promyelocytic cell line,
HL-60 (41). Similarly, creation of myeloid cell lines defective in signaling through their retinoid receptors do not undergo gmanulocytic differentiation in the presence of G-CSF (22), and retinoid-dleficient tissues acquire a pre-malignant phenotype, and a concomitant loss of differentiation (29, 30).
Malignant cell lines derived from various carcinomas exhibit diminished expression of retinoic acid receptor mRNA, implyimg that the loss of expression may be an important event in tumorogenesis (33, 34, 35, 36, 37). Furthermore, disruption of retinoic acid receptor activity, as ev-idenced in knock-out mouse models disrupted for the RAR gene, display an im vitro block to granulocytic differentiation (38, 39).
However, other studies using a similar approach have resulted in the development of hematopoietic cell lines (23). The hematopoietic stem and early progenitor cells are characterized by their surface expression of the surface antigen marker known as CD34", and exclusion of expression of the surface lineage antigen markers, Lin". Experiments utilizimg several leukemia cell lines revealed that retinoic acid receptor mediated signalling results in the induction of expression of the differentiation marker CD38 «ell surface antigen whereas antagonists to RAR abolished CD38 antigen up-regulation (24, 25).
Therefore, to date, the data are conflicting as to definitive roles for VitD and RA in induction of myelomonocytic and promyelocytic cell differentiation, or prevention of these processes. Although some previous studies with inactivation of RAR, RXR and VDR using antagonists, antisense technology or transduction methods with truncated receptors, yielded inhibited granulocytic 2s and monocytic differentiation, these studies were «conducted using leukemia cell lines that are blocked at the myeloblast or promyeJocytic stage of differentiation (19, 22, 64).As stated above, isolation procedure s for hematopoietic and other stem cells result in small populations of cells that are difficult to expand in ex-vivo cultures. Current culture methods enable large-scale expansion of progenitor and differentiated cell populations, but provide minimal amplification of the stem cell component. Applications and uses of stem cell populations for cell replacement therapy, in-vivo tissue regeneration, ex-vivo ' tissue formation and gene therapy, necessitate the acquirement of largse numbers of these cell populations. s There is thus a widely recognized need for, and it would be highly advantageou s to have, a method of propagating large numbers of stem cells in an ex-vivo setting. Methods enabling ex-vivo expansion of stem cell compartments yielding large numbers of these cell populations will therefore pioneer feasible stem cell therapies for human treatment, with a clear and direct impact on th-e treatment of an infinite number of pathologies and diseases.
Some pathological and medically induced conditions are chara cterized by a low numbser of in-vivo self or transplanted renewable stem cells, in which conditions, i t will be advantageous to have an agent which can induce stem cell expansion ire-vivo.
The present invention discloses the use of various molecules for interfering with CD38 expression and/or activity, thereby inducing ex-vivo and/or in-viwo expansion of stem cell populations, resulting, when applied, for example, to» hematopoietic stem cells, in large numbers of undifferentiated
CD34'/Lin (CD33, CD14, CD15, CD4, etc.), as well as CD34'/CD38 cells, especially C D34"4,/Lin’ cells.
This novel and versatile technology may be used for ex-vivo and in-vivo expansion of stem cells, of hematopoietic and other origins, maintaining their self-renewal potential for any in-vivo or ex-vivo application which requires large numbers of stem cell populations.
While reducing the present invention to practice, it was umexpectedly found that micotinamide, a well-known CD38 inhibitor, represses the process of differentiati-on of stem cells and stimulates and prolongs the phase of active cell proliferatior and expansion of the cells ex-vivo. It was further umexpectedly found that a series of chemical agents, retinoic acid receptor antagonists of the
RAR and RXR superfamilies, and Vitamin D receptor antagonists, which have ' been shown to affect CD38 expression, also repress the process of ] differentiation of stem cells and stimulates and prolongs, for up to 16-18 weeks, 5s the phase of active cell proliferation and expansion ex-vivo.
These unexpected effects were surprisingly obtained when the source of cells was CD34" enriched hematopoietic cells (stem and early progenitor cells) and, most surprisingly, when the source of cells included the entire fraction of mononuclear blood cells (whole fraction of white blood cells, which includes stem, progenitor and committed cells).
Equally unexpected was the finding that primary hepatocyte cultures incubated with the amtagonists described above revealed an increase in the proportion of cells producing a-fetoprotein, hence signaling the proliferation of early hepatocytes. Supplementation of hepatocyte cultures with growth factors alone was not sufficient to stimulate proliferation of early hepatocyte populations, though growth factor supplemented RAR antagonist treated cultures responded similarly to unsupplemented RAR antagonist treated cultures. Furthermoxe, first passage of growth factor supplemented RAR antagonist treated cultures revealed the presence of a large proportion of oval cells, indicative of hepatocyte progenitor cells, while supplemented untreated cultures did not result in evidence of oval cell populations, hence following second passage revealed dramatically reduced numbers of hepatocytes. Thus only the presence of the RAR antagonist is sufficient to stimulate hepatocyte cell expansion.
This newly discovered effect of the nicotinamide as well as of the receptor antagonists Of the RAR, RXR and VDR superfamilies, was used for : maximizing the ex-vivzo expansion of various types of cells as is further detailed hereinunder.
It is one object of the present invention to provide a method of ex-vivo expanding a population of stem cells, while at the same time. substantially inhibiting ex-vivo differentiation of the stem cells.
It is another object of the present inveration to provide a method of in-vivo expanding a population of stem cells, while at the same time substantially inhibiting in-vivo differentiation of the stem cells, thereby inducing in-vivo renewal of the stem cells.
It is yet another object of the present invention to use the expanded stem cells in different applications, including, but not limited to, post expansion cis-differentiation, post expansion trans-differentiation, post expansion genetic modulation, post expansion transplantations, post expansion implantations, adoptive immunotherapy and the like.
It is hence another more specific object of the present invention to provide a method of hematopoietic cells transplaratation or implantation.
It is still another more specific object of the present invention to provide a method of genetically modifying stem cells witha an exogene.
It is yet another object of the present invention to provide a method of adoptive immunotherapy.
It is an additional object of the present inwention to provide a method of mobilization of bone marrow stem cells into the peripheral blood of a donor for harvesting the cells.
It is still an additional object of the present invention to provide a method of preservation of stem cells.
It is a further object of the present imvention to provide stem cell collection bags.
It is still a further object of the present invention to provide assays of : determining whether a specific retinoic acid rec eptor antagonist is suitable for inducing ex-vivo and/or in-vivo stem cell expansion.
It 1s still a further object of the present invention to provide assays of determining whether a specific retinoid X receptor antagonist is suitable for ' inducing ex-vivo and/or in-vivo stem cell expansion.
It is still a further object of the present invention to provide assays of determining whether a specific Vitamin D rec-eptor antagonist is suitable for inducing ex-vivo and/or in-vivo stem cell expansion.
It is still a further object of the present invention to provide assays of determining whether specific signaling throlagh retinoic acid receptors is suitable for inducing ex-vivo and/or in-vivo stem. cell expansion.
It is still a further object of the present invention to provide assays of determining whether specific signaling through retinoid X receptors is suitable for inducing ex-vivo and/or in-vivo stem cell expransion.
It is still a further object of the present invention to provide assays of determining whether signaling specific through Vitamin D receptors is suitable for inducing ex-vivo and/or in-vivo stem cell expeansion.
According to one aspect of the present invention, there is provided an assay of determining whether a retinoic acid receptor antagonist, a retinoid X receptor antagonist or a Vitamin D receptor antagonist is an effective cell expansion agent. The assay comprising culturimg a population of stem cells or cells of a substantially non-differentiated cell lime, in the presence of the retinoic acid receptor antagonist, the retinoid X recept-or antagonist or the Vitamin D receptor antagonist and monitoring expansion oef the cells, wherein if increased expansion and decreased differentiation occums, as compared to non-treated cells, the retinoic acid receptor antagonist, the retinoid X receptor antagonist or the Vitamin D receptor antagonist is an effective cell expansion agent.
Preferably, culturing the population of stem cells or cells of a substantially : non-differentiated cell line is performed in a presence of an effective amount of a cytokine, preferably, an early acting cytokine. This assay can be used, by one ordinarily skilled in the art, to determine which «of the antagonists listed below is most efficient for the purpose of implementing the various methods,
preparations and articles-of-manufacture of the present invention which are further «described hereinafter. :
According to another aspect of the present invention there is provided a method of ex-vivo expanding a population of stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-viro.
Ln one embodiment, the method comprises providing the stem cells with ex-vivo culture conditions for ex-vivo cell proliferation and, at the same time, for reducing the activity and/or expression of CD38, thereby expanding the population of stem cells: while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo.
En another embodiment the method comprises provi ding the stem cells with exc-vivo culture conditions for ex-vivo cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to retinoic acid, retinoicls and/or Vitamin D, thereby expanding the popul ation of stem cells 1s while at the same time, substantially inhibiting differentiation of the stem cells ex-vivor.
In still another embodiment the method comprises providing the stem cells with ex-vivo culture conditions for ex-vivo cell proli feration and, at the same tame, for reducing a capacity of the stem cells in responding to signaling pathways involving the retinoic acid receptor, retinoid—X receptor and/or ~~ Vitami n D receptor, thereby expanding the population of stem cells while at the same time, substantially inhibiting differentiation of the ster cells ex-vivo.
In yet another embodiment, the method comprises providing the stem cells with ex-vivo culture conditions for ex-vivo cell prolaferation and, at the same time, with nicotinamide, a nicotinamide analog, a nicotinamide or a nicotimamide analog derivative or a nicotinamide or a micotinamide analog . metabolite, thereby expanding the population of stem cells while at the same time, s-ubstantially inhibiting differentiation of the stem cells ex-vivo.
According to another aspect of the present invention there is prowided a method of im-vivo expanding a population of stem cells, while at the same time, substantially inhibiting differentiation of the stem cells in-vivo.
In ome embodiment, the method comprises administering to a subject in need thereof a therapeutically effective amount of an agent, the agent serves for reducing an expression and/or activity of CD38.
In amother embodiment, the method comprises administering to a subject in need thereof a therapeutically effective amount of an agent, the agent serves for reducing a capacity of the stem cells in responding to retinoic acid, retinoids and/or Vitamin D.
In still another embodiment, the method comprises administerimg to a subject in n eed thereof a therapeutically effective amount of an agent, thae agent serves for xeducing a capacity of the stem cells in responding to signaling pathways involving the retinoic acid receptor, retinoid-X receptor and/or
Vitamin D receptor.
In yet another the method comprises administering to a subject in need thereof a therapeutically effective amount of an agent selected from the group consisting of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamidle analog derivative and a nicotinamide or a nicotinamide analog metabolite.
According to yet another aspect of the present invention there is prrovided a method of ex-vivo expanding a population of hematopoietic renewable stem cells ex-vivo.
In ome embodiment, the method comprises obtaining adult or meonatal umbilical coord whole white blood cells or whole bone marrow cells sample and : providing the cells in the sample with ex-vivo culture conditions for stem cells ex-vivo cell proliferation and, at the same time, for reducing the expression and/or actiwity of CD38, thereby expanding a population of a renewable stem cells in the sample.
In another embodiment, the method comprises obtaining adult or neonatal umbilical cord whole white blood cells or whole bone marrow cells sample and providing the cells in the sample with ex-vivo culture conditions for stem cells ex-vivo cell proliferation and, at the same time, for xeducing a : capacity of the stem cells in responding to retinoic acid, retinoids and/or
Vitamin D, thereby expanding a population of a renewable stem cells in the sample.
In still another embodiment, the method comprises obtainirag adult or neonatal umbilical cord whole white blood cells or whole bone marrow cells sample and providing the cells in the sample with ex-vivo culture conditions for stem cells ex-vivo cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to signaling pathways inwolving the retinoic acid receptor, the retinoid X receptor and/or the Vitamin ID receptor, thereby expan ding a population of a renewable stem cells in the sampsle.
In yet another embodiment, the method comprises obtainirag adult or neonatal umbilical cord whole white blood cells or whole bone m.arrow cells sample and providing the cells in the sample with ex-vivo culture comditions for stem cells ex- vivo cell proliferation and, at the same time, with nico-tinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog deri vative or a nicotinamide or a nicotinamide analog metabolite, thereby expanding a population of a renewable stem cells in the sample.
Further according to an aspect of the present invention, there 1s provided a method of genetically modifying stem cells with an exogene.
In one embodiment, the method comprises (a) obtaining ster cells to be genetically modified; (b) providing the stem cells with ex-vavo culture conditions for cell proliferation and, at the same time, for re=ducing the ] expression and/or activity of CD38, while at the same time, s-ubstantially inhibiting differentiation of the stem cells ex-vivo; and (c) genetically modifying the stem cells with the exogene.
In another embodiment, the method comprises (a) obtaining stem cells to be genetically modified; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to retinoic aci d, retinoids and/or Vitamin D, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo; and (c) genetically modifying the stem cells with the exogene.
In still another embodiment, the mmethod comprises (a) obtaining stem cells to be genetically modified; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to signaling pathways involving the retinoic acid receptor and/or the retinokd X receptor and/or the Vitamin D receptor, thereby expanding a populatiom of the stem cells, while at the same time, substantially inhibiting differentiati on of the stem cells ex-vivo; and (c) genetically modifying the stem cells with the exogene.
In yet another embodiment, the method comprises (a) obtaining stem cells to be genetically modified; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and with micotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo, and (c) genetically modifying the stem cells with the exogene.
In a preferred embodiment, genetically modifying the cells is effected by a vector, which comprises the exogene, which vector is, for example, a viral vector or a nucleic acid vector.
According to still another aspect of the present invention there are provided transplantable hematopoietic cel | preparations.
In one embodiment, a transplantable hematopoietic cell preparation of the present invention comprises an expanded population of hematopoietic stem cells propagated ex-vivo in the presence of an effective amount of an agent, the agent reducing an expre ssion and/or activity of CD38, while at the same time, substantially inhibiting differentiation of the stem cells; and a pharmaceutically acceptable carrier.
In another embodiment, a transplantable hematopoietic cell preparation 5s of the present invention comprise an expanded population of hematopoietic stem cells propagated ex-vivo in the presence of an effective amount of an agent, the agent reducing a capacity of the stem cells in responding to retinoic acid, retinoids and/ or Vitamin D, while at the same time, substantially inhibiting differentiation of the stem cells; and a pharmaceutically acceptable carrier.
In still another embodiment, a transplantable hematopoietic cell preparation of the present invention comprises an expanded population of hematopoietic stem cells propagated exc-vivo in the presence of an effective amount of an agent, the agent reducing a capacity of the stem cells in responding to retinoic acid receptor, retinoid =X receptor and/or Vitamin D receptor signaling, while at the same time, substantially inhibiting differentiation of the stem cells; and a pharmaceutically acceptable carrier.
In yet another embodiment, a transplantable hematopoietic cell preparation of the present invention comprises an expanded population of hematopoietic stern cells propagated ex-vivo in the presence of an effective amount of an agent selected from the group consisting of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative and a nicotinamide or a nicotinamide analog metabolite, while at the same time, substantially inhibeiting differentiation of the stem cells; and a pharmaceutically acceptable carrier.
Further according to an aspect of the present invention there is provided an ex-vivo expanded population of hematopoietic stem cells, comprising a : plurality of cells characterized by 3-20 % of the cells being reselectable for
CD34" cells, of which at least 40 % of cells are CD34" im, Wherein, in the reselectable CD34" cells, a majority of cells which are Lin" are also CD34" cells. In one embodiment, the hematopoietic stem cells are derived from a source selected from the group consisting of bone marrow, peripheral blood and neonatal umbilical cord blood. In another embodiment, the population of cells has a single genetic background. In yet another embodiment, the ex-vivo expanded population of hematopoietic stem cells comprises at least N cells s derived from a single donor, wherein N equals the average number of CD34" cells derived from one sample of neonatal umbikical cord blood, bone marrow, or peripheral blood multiplied by 1,000. Cell surface expression of the CD34 and/or Lin markers can be determined, for example, via FACS analysis or immunohistological staining techniques. A self renewal potential of the stem cells can be determined by long term colony formation (LTC-CFUc) or by in vivo engraftment in a SCID-Hu mouse model.
According to a further aspect of the presemt invention there is provided a method of preserving stem cells comprising handling the stem cell in at least one of the steps selected from the group consisting of harvest, isolation and storage, in a presence of an effective amount of a retinoic acid receptor antagonist, a retinoid X receptor antagonist and/or a Vitamin D receptor antagonist. Alternatively, the method comprises handling the stem cell in at least one of the steps selected from the group consisting of harvest, isolation and storage, in a presence of an effective amount of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite.
According to still a further aspect of the present invention there is provided a cells collection/culturing bag supplemented with an effective amount of a retinoic acid receptor antagonist, a retinoid X receptor antagonist and/or a
Vitamin D receptor antagonist, which substantially inhibits cell differentiation, or with an effective amount of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative and a nicotinamide or a nicotinamide analog metabolite, which substantially inhibits cell differentiation as well; and a cells separation and/or washing buffer supplemented with an x0 effective amount of a retinoic acid receptor antagonist, a retinoid X receptor antagonist andlor a Vitamin D receptor antagonist, which substantially inhibits cell differentiation, or with an effective amount of nicotinamide, a nicotinammide analog, a nicotinamide or a nicotinamide analog derivative and a nicotinammide or a nicotimamide analog metabolite, which substantially inhibits cell differentiation as well.
According to another aspect of the present invention there is provided a method of hermatopoietic cells transplantation or implantation.
In one embodiment, the method comprises (a) obtaining hematopoietic stem cells to be transplanted from a donor; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing an expression and/or activity of CD38, thereby expanding the population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo; and (c) transplanting or implantin g the stem cells to a recipient.
In another embodiment, the method comprises (a) obtaining hematopoietic stem cells to be transplanted from a donor; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to retinoic acid, retimoids and/or Vitamin D, thereby expanding the population of the stem cells, whaile at the same time, substantially inhibiting differentiation of the stem cells ex—vivo, oo and (c) transplanting or implanting the stem cells to a recipient.
In still another embodiment the method comprises (a) obtaining hematopoietic stem cells to be transplanted from a donor; (b) providing the= stem cells with ex- vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to signaling pathaways involving the retinoic acid receptor, the retinoid X receptor and/or the Vitamin : D receptor, thereby expanding the population of the stem cells, while at the same time, stibstantially inhibiting differentiation of the stem cells ex-vivo; and (c) transplanting or implanting the stem cells to a recipient.
In yet another embodiment the method comprises (a) obtaining hematopoietic stem cells to be transplanted from a donor; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and with nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog 5s derivative or a nicotinamide or a nicotinamide analog metabolite, thereby expanding the population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo; and (c) transplanting or implanting the stem cells to a recipient.
The donor and the recipient can be a single individual or different individuals, for example, allogeneic individuals.
According to yet another aspect of the present invention there is provided a method of adoptive immunotherapy.
In one embodiment the method comprises (a) obtaining hematopoietic stem cells from a recipient; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing an expression and/or activity of CD38, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells; and (c) transplanting the stem cells to the recipient.
In another embodiment the method comprises (a) obtaining hematopoietic stem cells from a recipient; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to retinoic acid, retinoids and/or Vitamin D, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells; and (c) transplanting the stem cells to the recipient.
In still another embodiment the method comprises (a) obtaining hematopoietic stem cells from a recipient; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to signaling pathways involving the retinoic acid receptor and/or the retinoid X receptor and/or the
Vitamin D receptor, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem c-lis; and (c) tranasplanting the stem cells to the recipient.
In yet another embodiment the method comprises (a) obtaining hematopoietic stem cells from a recipient; (b) providing the sterm cells with ex-vivo culture conditions for cell proliferation and with nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells; and (c) transplanting the stem cells to the recipient.
According to yet another aspect of the present invention there is provided a method of mobilization of bone marrow stem cells into the peripheral blood of a donor for harvesting the cells.
In one embodiment the method comprises (a) administering an effective am ount of an agent to the donor for reducing an expression and/or activity of
CID38, thereby expanding a population of the stem cells, while at thane same time, substantially inhibiting differentiation of the stem cells; and (b) harvesting the cel Is by leukophoresis.
In another embodiment the method comprises (a) administering an effective amount of an agent to the donor for reducing a capacity’ of the stem cells in responding to retinoic acid, retinoids and/or Vitamim D, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells; and (b) harvesting the cells by lewkophoresis.
In still another embodiment the method comprises (a) administering an . effective amount of an agent to the donor for reducing a capacity of the stem cells in responding to signaling pathways involving the retinoic acid receptor and/or the retinoid X receptor and/or the Vitamin D receptor, there by expanding a population of the stem cells, while at the same time, substantially inhibiting : differentiation of the stem cells; and (b) harvesting the cells by leukophoresis. ' In yet another embodiment the method comprises (a) administering to the donor an effective amount of an selected from the group consisting of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative and a nicotinamide or a nicotinamide analog metabolite, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells; and (b) harvesting the cells by leukophoresis.
Preferably, the methods of mobilization of stem cells further comprising administering to the donor at least one cytokine, preferably at least one early cytokine.
According to further features in preferred embodiments of the invention described below, reducing the expression and/or activity of CD38 is effected by an agent that downregulates CID38 expression.
According to still further features in the described preferred embodiments the agent that downregulates CD38 expression is selected from the group consisting of a retinoic acid receptor antagonist, a retinoid X receptor antagonist and a Vitamin D receptor antagonist. Alternatively, this agent is an antagonist for reducing a capacity of the stem cells in responding to retinoic acid, retinoid and/or Vitamin D.
According to still further features in the described preferred embodiments the agent that downregulates CD38 expression is a polynucleotide.
According to still further features in the described preferred embodiments the agent that downregulates CD38 expression the polynucleotide encodes an anti CD38, an anti retinoic acid receptor, an anti retinoid X receptor or an anti Vitamin D receptor antibody or intracellular antibody.
According to still further features in the described preferred embodiments the agent that downregulates CD38 expression the polynucleotide is a small interfering polynucleotide molecule directe=d to cause intracellular
CD38, retinoic acid receptor, retinoid X receptor or Vit amin D receptor mRNA : degradation.
According to still further features in the described preferred 5s embodiments the agent that downregulates CD38 expression the small interfering polynucleotide molecule is selected from the group consisting of an
RNAi molecule, an anti-sense molecule, a rybozyme melecule and a DNAzyme molecule.
According to further features in preferred embodiments of the invention described below, reducing the expression and/or activity of CD38 is effected by an agent that inhibits CD38 activity. The agent can be, for example, nicotinamide, a nicotinamide analog, a nicotinamide oer a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite.
The nicotinamide analog is preferably selected faom the group consisting of benzamide, nicotinethioamide, nicotinic acid and a-saamino-3-indolepropionic acid.
According to further features in preferred embodiments of the invention described below, providing the stem cells with the conditions for ex-vivo cell proliferation comprises providing the cells with nutrients and with cytokines.
According to still further features in the describesd preferred embodiments the cytokines are early acting cytokines.
According to still further features in the describesd preferred embodiments the early acting cytokines are selected from the group comprising stem cell factor, FLT3 ligand, interleukin-1, interleukin-2, interleukin-3, interleukin-6, interleukin-10, interleukin-12, tumor necrosis factor-a. and thrombopoietin.
According to still further features in the described preferred . embodiments the cytokines are late acting cytokines.
According to still further features in the described preferred embodiments the late acting cytokines are selected from the group comprising granulocyte colony stimulating factor, granulocyte/macrophage colony stimulating factor, erythropoietin, FGF, EGF, NGF, VEGF, LIF, Hepatocyte growth factor and macrophage colony stimulating factor.
According to still further features in the described preferred embodiments the stem cells are selected from the group consisting of embryonic stem cells and adult stem cells.
According to still further features in the described preferred embodiments the stem cells are hematopoietic stem cells.
According to still further features in the described preferred embodiments the stem cells are derived from a source selected from the group consisting of bone marrow, peripheral blood and neonatal umbilical cord blood.
According to still further features in the described preferred embodiments the stem cells that undergo expansion are mixed (e.g., not separated from, not enriched) with committed cells.
According to still further features in the described preferred embodiments the stem cells are enriched for hematopoietic CD34" cells.
According to still further features in the described preferred embodiments the hematopoietic cells are characterized by an absence, or significantly diminished expression of cell surface antigens CD38, CD3, CD61, CD19,
CD33, CD14,CD1S or CDA.
According to still further features in the described preferred embodiments reducing the capacity of the stem cells in responding to signaling pathways is reversible, e.g., inherently reversible.
According to still further features in the described preferred embodiments reducing the capacity of the stem cells in responding to the above antagonists and/or signaling pathways of the above receptors is by ex-vivo culturing the . stem cells in a presence of an effective amount of at least one retinoic acid receptor antagonist, at least one retinoid X receptor antagonist and/or at least one Vitamin D receptor antagonist, preferably, for a time period of 0.1-50 %,
preferably, 0.1-25 %, more preferably, 0.1-15 %, «of an entire ex-vivo culturing period of the stem cells. ’ According to still further features "im the described preferred } embodiments, the retinoic acid receptor antagoni st is selected from the group consisting of:
AGN 194310; AGN 193109; 3—(4-Methoxy-phenyvIsulfanyl)-3-methyl-butyric acid; 6-Methoxy-2,2-dimethvl-thiochroman-4-one,2,2-Dimethyl-4-oxo-thiochroman- 6-yltrifluoromethane-sulfonate; Ethyl 4-((2,2 dimethyl-4-oxo-thiochroman-6-yl)ethynyl)-benzoate; Ethyl 4-((2,2-dimethy 1-4-triflouromethanensulfonyloxy -(2H)- thiochromen-6-yl)ethynyl)-benzoate(41);
Thiochromen-6-yl]-ethynyl]-benzoate(yl); (p-[(E)-2-[3'4'-Dihydro-4,4'-dimethyl-7"-(heptylox_y)-2'H-1-benzothiopyran-6'yl] propenyl] benzoic acid 1'1'-dioxide; 2E,4E 6E-[7-(3,5-Di-t-butyl-4-n-butoxyphenyl)-3—methyl]-octa-2,4,6-trienoic acid; 2E 4E,6E-[7-(3,5-Di-t-butyl-4-n-propoxyphenyl)- 3-methyl}-octa-2,4,6-trienoic acid; 2E,4E,6E-[7-(3,5-Di-t-butyl-4-n-pentoxyphenyl)-3-methyl]-octa-2,4,6-trienoic acid; 2E,4E,6E-[7-(3,5-Di-t-butyl-4-n-hexoxyphenyl)-3-methyl]-octa-2,4,6-trienoic acid; 2E,4E,6E-[7-(3,5-Di-t-butyl-4-n-heptoxyphenyl)- 3-methyl]-octa-2,4,6-trienoic acid; 2E 4E,6E-[7-(3,5-Di-t-butyl-4-n-octoxyphenyl)-3 -methyl}-octa-2,4,6-trienoic } acid, (2E,4E,6E)-7-[3-t-butyl-5-(1-phenyl-vinyl)-phenyl)-3-methyl-octa-2,4,6-trienoic acid; 2E,4E,6E-[7-(3,5-Di-t-butyl-4- {[4,5-.sup.3
H.sub.2]-n-pentoxy}phenyl)-3-methyl]-octa-2,4,6-trienoic acid;
(2E,4E)-(1 RS,2RS)-5-[2-(3,5-di-tert.butyl-2-ethoxy-phenyl)-cyclopropyl}-3-met hyl-penta-2 4-dienoic acid ethyl ester; ’ (2E,4E)-(1 RS,2RS)-5-[2~(3,5-di-tert.butyl-2-ethoxy-phenyl)-cyclopropyl]-3-met hyl-penta-2 4-dienoic acid;
(2E,4E)-(1 RS,2RS)-5-[2-(3,5-di-tert.butyl-2-butoxy-phenyl)-cyclopropyl]-3-met hyl-penta-2 4-dienoic acid, (2E,4E,6Z)-7-[3,5-di-tert.butyl-2-ethoxyphenyl]3-methyl-2,4,6-wctatrienoic acid; (2E,4E,6Z)-7-[3,5-di-tert.butyl-2-butyloxyphenyl]-3-methyl-2,4-,6-octatrienoic acid; 4-(5,6,7,8-tetrahydro-35,5,8,8-tetramethyl-2-naphthalene-carboxamido) benzoic acid;
(2E,4E)-3 -methyl-5-[(1S,25)-2-(5,5,8,8-tetramethyl-5,6,7,8-tetrahydro-naphthal en-2-yl)-cyclopropyl]-penta-2 ,4-dienoic acid; p-[(E)-2-[ 3',4'-Dihydro-4' 4'-dimethyl-7'-(heptyloxy)-2'H-1-ben=zothiopyran-6'-yl
]propenylJbenzoic acid; 1',1'-dioxide, 4-(7,7,10, 10-Tetramethyl-1-pyridin-3-ylmethyl-4,5,7,8,9,10-hexahydro-1H-naph to[2,3-g]inndol-3-yl)-benzoic acid, (2E,4E,6Z)-7-[3,5-di-tert.butyl-2-methoxyphenyl]-3-methyl-2 4 6-octatrienoic acid;
(2E,4E,6Z)-7-[3,5-di-tert.butyl-2-ethoxyphenyl]-3-methyl-2,4,6-octatrienoic acid; (2E,4E,6Z)-7-[3,5-di-tert.butyl-2-hexyloxyphenyl]-3-methyl-2 <4 6-octatrienoic acid; (2E,4E,622)-7-[3,5-di-tert.butyl-2-octyloxyphenyl]-3-methyl-2,4,6-octatrienoic acid; and
(2E,4E)-( 1RS,2RS)-5-[2-(3,5-di-tert-butyl-2-butoxy-phenyl)-cyclopropyl]-3-met ; hyl-penta-2,4-dienoic acid (2E,4E,62Z2)-7-(3-n-propoxy-5,6,7,8-tetrahydro-5,5,8,8-tetramet hylnaphthalene-2 -yl)-3-methylocta-2,4,6-trienoic acid, 4-(5H-2,3(2,5 dimethyl-2,5-hexano)-5-n-propyldibenzo(b,e][1,4]diazepin-11~yl)benzoic acid,
4-(5H-2,3-(2,5-dimethyl -2,5-hexano)-5methyl-8-nitrodibenzo[b,e][1,4]diazepin- 11-yl)benzoic acid, ’ 4-{[4-(4-Ethylphenyl)2,2-dimethyl-(2H)-thiochromen-6-yl]ethynyl} benzoic acid, 4-[4-2methyl-1,2-dicarb-a-closo-dodecaboran- 1-yl-phenylcarbamoyl]benzoic acid, 4-[4,5,7,8,9,10-hexahyd.ro-7,7,10,10-tetramethyl-1-(3-pyridylmethyl)-anthra[ 1,2 -b]pyrrol-3-yl]benzoic acid, Lo (3-pyridylmethyl)-]5-thiaanthra[2,1-b}pyrrol-3-yl)benzoic acid, and (3-pyridylmethyl)-anthra[2m1-d]pyrazol-3-yl]benzoic acid.
According to still further features in the described preferred embodiments, the retimoid X receptor antagonist is selected from the group consisting of:
LGN100572, LGN100574, 1-(3-hydroxy-5,6,7,8-te trahydro-5,5,8,8-tetramethylnaphthalene-2-yl)ethanone, 1-(3-propoxy-5,6,7,8-testrahydro-5,5,8,8-tetramethylnaphthalene-2-yl)ethanone, 3-(3-propoxy-5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphthalene-2-yl)but-2-enen itrile, 3-(3-propoxy-5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphthalene-2-yl)but-2-enal, (2E,4E,6E)-7-3[-propoxy-5,6,7,8-tetrahydro 5,5,8,8-tetramethyl-2-n aphthalene-2-yl]-3-methylocta-2,4,6-trienoic acid, 4-[3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)carbonyl] benzoic acid, 4-[1-(3,5, 5,8,8-pentarmethyl-5,6,7,8-tetrahydro-2-naphthyl)ethenyl] benzoic acid, 4-[1(3,5,5,8,8-peratamethyl-5,6,7,8-tetrahydro-2-naphthyl)cyclopropyl] benzoic acid, 4-[1-(3,5,5,8,8-pentameethyl-5,6,7,8-tetrahydro-2-naphthyl)ethenyl] benzenete x trazole, 2-[1-(5,5,8,8-tetramethyl-5,6,7,8-tetrahydro-2-naphthyl) ethenyl]pyridine-5-carboxylic acid, 2-[1-(3,5,5,8,8-pentam ethyl-5,6,7, 8-tetrahydro-2-naphthyl)ethyl]pyridine-5-carb oxylic acid, ethyl-2-[1-(3,5,5,8,
8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)ethenyl]pyridine-5-carboxylate, 5-[1-3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)ethenyl]pyridine-2-car ’ boxylic acid, 2-[1-(3,5,5,8,8-pentamethyl-5,6,7 ,8-tetrahydro-2-naphthyl) cyclopropyl]pyridine-5-carboxylic acid, methyl 2-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)cyclopropyl]pyridine- 5-carboxylate, 4-[1-(3,5, 5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)ethenyl}-N-(4-hydroxyphenyl) benzamide, 2-[1-(3,5,5,8,8-Pentamethyl-5,6,7, 8-tetrahydro-2-naphthyl) ethenyl] pyridine-5-carboxylic acid, 2-[1-(3,5,5,8,8-Pentamethyl-5, 6,7,8-tetrahydro-2-naphthyl)cyclopropyl]pyridine-5-carboxylic acid, 4-[(3,5, 5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphth yl)carbonyl]benzoic acid butyloxime, 4-[(3,5,5,8,8-pentamethyl-5,6,7,8—tetrahydro-2-naphthyl) carbonyl]benzoic acid propyloxime, 4-[(3,5,5,8,8-pentamethyl-5,6,7,8-terrahydro-2 -naphthyl)carbonylJbenzoic acid cyanoimine, 4-[(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2 -naphthyl)carbonyl benzoic acid allyloxime, 4-[(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2Z -naphthyl)carbonyi}benzoic acid 4-(3-methylbut-2-enoic acid)oxime, and 4-[(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)carbonyl Jbenzoic acid 1-aminoethyloxime (2E,4E,6Z)-7-(3-n-propoxy-5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphthalene-2 -yl)-3-methylocta-2,4,6-trienoic acid, and4-(5H-2,3(2,5 dimethyl-2,5-hexano)-5-n-propyldibenzo[b,e] [ 1,4]diazepin-11-yl)benzoic acid, 2s and 4-(5H-2,3-(2,5-dimethyl-2,5-hexano)-5methyl-8-nitrodibenzo[b,e][ 1,4]diazepin- . 11-yl)benzoic acid.
According to still further features in the described preferred embodiments, the Vitamin D receptor antagonist is selected from the group consisting of: 1 alpha, 25-(OH)-D3-26,23 lactone; lalpha, 25-dihydroxyvitamin
WeO 03/062369 PCT/IL03/00064
D (3); the 25-carboxylic ester ZK 159222; (23S)- 25-dehydro-1 alpha-OH-D (3), (23R)-25-dehydro-1 alpha-OH-D (3); 1 beta, 25 (OH); Dj; 1 beta, 25¢O0H),-3-epi-D;; (23S) 25-dehydro-1 alpha(OH) D3-26,23-lactone; (23R) 25—dehydro-1 alpha(OH)D3-26,23-lactone and
Butyl-(5Z,7E,22E-(1S,7E,22E-(1S,3R 24R)-1,3,24-trihydroxy-26,27-cyclo-9,10 -se=cocholesta-5,7,10(19),22-tetraene-25-carboxylate).
The present invention successfully addresses the shortcomings of the presently known configurations by providing a method of progpagating cells, yet delaying their differentiation by interference with CD38 expression and/or activity, or with retinoic acid, retinoid X and/or Vitamin D receptor signaling.
The present invention further successfully addresses thee shortcomings of the presently known configurations by enabling, for the first time, expansion of renewable stem cells in the presence of committed cells, so as to obtain an exppanded population of renewable stem cells, albeit their ori gin from a mixed po-pulation of cells, in which they constitute a fraction of a percent.
Additional features and advantages of the methods cell preparations and articles of manufacture according to the present invention willl become apparent to the skilled artisan by reading the following descriptions.
The invention is herein described, by way of example only, with reference to the accompanying drawings. With specific reference now to the drawings in detail, it is stressed that the particulars show-n are by way of example and for purposes of illustrative discussion «of the preferred embodiments of the present invention only, and are presented in the cause of providing what is believed to be the most useful and readily understood de.scription of the principles and conceptual aspects of the mnvention. In this regard, no attempt is made to show structural details of the invention in more de tail than is necessary for a fundamental understanding of the invention, the description taken with the drawings making apparent to those skilled in the art how the several forms of the invention may be embodied 1n practice. .
In the drawings:
FIG. 1A is a FACS analysis plot showing control cell surface marker expression with liberal expression of CD34, CD38 and limeage-related antigens.
FIG. 1B is a FACS analysis plot showing RAR antagonist (10° M) : treated culture cell surface marker expression with a simeilar level of expression of the CD34 antigen, but an almost complete abrogation of the CD38 and lineagze-related antigen expression, as compared to controls.
FIG. 1C is a FACS analysis plot showing RA R antagonist (10° M) treated culture cell surface marker expression with a simmilar level of expression of the CD34 antigen, but an almost complete abrogation of the CD38 and lineagze-related antigen expression, as compared to controls.
FIG. 2A is a graph of data collected by FACS analysis showing comp-arable CD34" cell expansion levels in control and RAR antagonist treated cultures.
FIG. 2B is a graph of data collected by FACS analysis showing markedly enhanced CD34°CD38" cell expansion levels in respomse to RAR antagonist treatment, at either the 10 or 107 M concentrations, as compared to controls.
FIG. 2C is a graph of data collected by FACS analysis showing markedly enhanced CD34'Lin” cell expansion levels in respormse to RAR antagonist treatrment, at either the 107% or 10" M concentrations, as compared to controls.
FIG. 3A is a graph of data collected by FACS analysis revealing comparable CD34" surface expression up to 2 weeks post seeding of control and treated cultures. Cultures were treated with an RAR ant agonist, 10° M and 107
M [oT 41 pg/liter to 0.41 pg/liter] and a combination of 4 cytokines (IL-6, TPO,
FLT3 and SCF), and were subjected to an additional positive selection step prior to FACS analysis. A marked increase in expression is seen, however, 9 and 11 weeks post seeding in cultures treated with RAR anta gonists, as compared to controls.
FIG. 3B is a graph of data collected by FACS analysis showing comparable €D34'CD38 surface expression up to 2 weeks post seeding of control and RRAR antagonist and cytokine treated cultures, (as treated in 3A), in samples subjected to an additional positive selection step. A marked 3ncrease in 5s expression is seen 9 and 11 weeks post seeding in RAR antagomist treated cultures, as compared to controls.
FIG. 3C is a graph of data collected by FACS analysis showing enhanced
CD34'Lin" s-urface expression by 2 weeks post seeding of RAR antagonist treated cultuares, (as treated in 3A), as compared to controls, in samples subjected to an additional positive selection step. A markedly increased expression is seen in the groups treated with RAR antagonist by 9 and 11 weeks post seeding
FIG. <4 is a graph of data collected by FACS analysis and LTC-CFU ability showing high levels of CD34" cell proliferation and long-term colony forming unit ability in ex-vivo cultures treated with 107 M of the RAR antagonist amd a combination of the 4 cytokines, as above, up to almost 12 weeks post seeding. At 10 weeks and 11 weeks (CFUs and CD34 cells, respectively), these populations begin to decline.
FIG. 5A is a FACS analysis plot of the negative control showing no background staining.
FIG. SB is a FACS analysis plot of the positive control of res elected cell cultures showing ample CD34" cell surface staining.
FIG. 5C is a FACS analysis plot of the RAR antagonist treate«d cultures 2 weeks post Teselection showing a marked leftward shift in profile, consistent with a less d ifferentiated state.
FIG. 5D is a FACS analysis plot of the RAR antagonist treated cultures : (107) 11 weeks post reselection showing ample CD34" cell surface staining, and a profile comsistent with a more differentiated state.
FIG. SE is a FACS analysis plot of the RAR antagonist treat ed cultures (10%) 11 weeks post reselection showing a marked leftward shift in profile, . consistent with a less differentiated state.
FIG. 6A is a graph of colony forming unit data showingg that both long-term cultures pulsed for the first 3 weeks with the antagonists or cultures administered RAR antagonists continuously reveal a 5-fold increase in CFU content as compared to control values.
FIG. 6B is a graph of cell enumeration data showing that long-term cultures either pulsed for the first 3 weeks with antagonists, or administered
RAR antagonists continuously, reveal a 5-fold increase in CFU content as compared to control values.
FIG. 7 is a graph of mixed colony forming unit data showirag that both long-term cultures pulsed for the first 3 weeks with the antagonists or cultures administered RRAR antagonists continuously reveal a dramatic incre-ase in CFU content as cormpared to control values, with pulse-treatment yielding: the highest
CFU values.
FIG. 8A is a photomicrograph of three weeks old primary hepatocyte cultures isolated from mice. Hepatocytes were probed for ex pression of a-fetoprotein (AFP) and counterstained with hematoxylin. Mo-derate AFP staining is evident (red-brown precipitate).
FIG. 8B is a photomicrograph of three week old primary- hepatocyte cultures isolated from mice. Hepatocytes were incubated in the presence of 10°
M retinoic aci d receptor antagonist (AGN 194310) and were similarly probed for AFP expre ssion and counterstained with hematoxylin. AGN 194310-treated hepatocytes revealed a marked increase in AFP expression, as compared to controls.
FIG. 9A is a photomicrograph of giemsa stained, three week old, primary murine hepatocyte cultures reveal ing cell morphology. Few oval cells were ) noted in this sample (thick arrow), in contrast to numerous hepatocytes with typical morphology (narrow arrow)
FIG. 9B is a photomicrograph of giemsa stained, primary hepatocyte cultures incubated in the presence of 10° M retinoic acid receptor antagonist (AGN 194310). Antagonist treated cells showed a marked increase in oval cell population (arrow).
FIG. 9C is a photomicrograph of giemsa stained, primary hepatocyte cultures incubated in the presence of 10° M retinoic acid receptor antagonist (AGN 194310) followed by trypsinization and replating, at a ratio of 1:2, in a culture medium devoid of cytokines. These cultures similarly revealed characteristic hepatocyte morphology
FIG. 10A is a photomicrograph of three weeks old primary hepatocyte cultures isolated from mice, and supplemented with EGF (20 ng/ml) and HGF (20 ng/ml). Hepatocytes were treated with RAR antagonist AGN 194310 at 10°
M to 107 M, probed for expression of albumin and counterstained with hematoxylin. There is no appreciable background staining. Indicated that the cells expanded in cultures supplernented with the antagonist are hepatocytes by nature.
FIG. 10B is a photomicrograph of three weeks old primary hepatocyte control cultures isolated from mice, similarly supplemented with EGF and HGF and probed for albumin expression. Negligible background staining is evident here as well.
FIG. 10C is a photomicrograph of three weeks old primary hepatocyte
RAR antagonist treated cultures isolated from mice, similarly supplemented : with EGF and HGF and probed for a-fetoprotein expression. Significant strong
AFP staining is evident (red-brown precipitate), indicating expansion of progenitor cells.
FIG. 10D is a photomicrograph of three weeks old primary hepatocyte control cultures isolated from mice, similarly supplemented with EGF and HGF and probed for a-fetoprotein expression. Negligible staining is evident ’ indicating a more differentiated cellmlar phenotype. All figures were photographed at 10x/0.3 magnification.
FIG. 11A is a photomicrograph of first passage heaptocyte control cultures isolated from mice and supplemented with EGF and HGF, split 1:2 following 2 weeks in culture and cultured for an additional week prior to probing for albumin expression, as above. Numerous typical hepatocytes (small arrow) are evident.
FIG. 11B is a photomicrograph of first passage RAR antagonist AGN 194310 (107° — 107 M) treated heaptocyte cultures isolated from mice cultured as in A and probed for albumin expression. Typical hepatocyte morphology (small arrow) is evident in this frame as well.
FIG. 11C is a photomicrograph of first passage RAR antagonist treated hepatocyte cultures, cultured and probed as in B. Numerous characteristic oval cells are evident (large arrow) in the field . Magnification - 20x/0.5.
FIG. 11D is a photomicrograph is a lower magnification of Figure 11C, revealing numerous islets of oval cells im the RAR antagonist treated cultures, consistent with a less-differentiated phenotype.
FIG. 11E is a photomicrograph of second passage heaptocyte control cultures isolated from mice and supplemented with EGF and HGF, split 1:2 following 2 weeks in culture, cultured for an additional week prior to 1:4 split, and following a final additional 4 day culture, probing for albumin expression, as above. Few hepatocytes are evident.
FIG. 11F is a photomicrograph of similarly isolated and cultured second passage heaptocyte cultures treated with RAR antagonist AGN 194310 (10° M . to 107 M). Significantly greater numbers of hepatocytes are evident in the cultures as compared to controls. Magnification - 20x/0.5.
FIG. 12A is a plot presenting the FACS analysis of cultures treated with cytokines only (control), RAR antagonist AGN 194310 (107 M) and a cormbination of RAR antagonist (107 M) and RXR antagonist, 3 weeks post res election. A marked leftward shift in profile of the coombined, RAR and RXR ‘ antagonists, treatment, consistent with a less differentiated state, as compared with the untreated control and the RAR antagonist treatment is demonstrated.
FIG. 12B is a plot presenting a FACS analysis -of cultures treated with cytokines only (control), RAR antagonist AGN 194310 10” M), RXR ankagonist LGN 100754 (107 M) and a combination of RAR and RXR antagonists (107 M), 5 weeks post reselection. A mmarked leftward shift in profile of the combined, RAR and RXR antagonists, treatment, consistent with a less differentiated state, as compared with the RAR antagonist treatment is demonstrated.
FIG. 13A is a bar graph presenting the data obtained by FACS analysis of cultures treated with a RAR antagonist AGN 194310, a RXR antagonist LGN 100754 and a combination thereof. Comparable CID34" surface expression levels determined 3 and 5 weeks post seeding are evidernt. A marked increase in expression in cultures treated with a combination of the RAR and RXR antagonists, as compared with the untreated (cytokines only) control, the RAR antagonist and RXR antagonist treatments is demonstrated.
FIG. 13B is a bar graph presenting the data obtairied by FACS analysis of cultures treated with an RAR antagonist AGN 194310, an RXR antagonist LGN 100754 and a combination thereof. Comparable CD34-"/38 surface expression levels determined 3 and 5 weeks post seeding are eviderat. A marked increase in expression in cultures treated with the combination of RAR and RXR antagonists, as compared with the untreated control (cytokines only), the RAR antagonist and the RXR antagonist treatments is demonstrated.
FIG. 13C is a bar graph presenting the data obtairied by FACS analysis of } cultures treated with an RAR antagonist AGN 194310, an RXR antagonist LGN 10-0754 and a combination thereof. Comparable CD34" /Lin surface expression levels determined 3 and 5 weeks post seeding are eviderit. A marked increase in expression in cultures treated with the RAR and RXR antagonists combination,
as compared with the untreated control (cytokines only), the RAR antagonist amd the RXR antagonist treatments is demonstrated.
FIG. 13D is a bar graph presenting the total cell «ensity of cultures treated with an RAR antagonist AGN 194310, an RXR antagzonist LGN 100754 amd a combination thereof. Comparable number of cells determined 3 and 5 weeks post seeding is evident. A significant increase of celll density in cultures treated with RAR+RXR antagonist 5 weeks post seeding, as. compared with the untreated control (cytokines only), the RAR antagonist arid RXR antagonist treatments is demonstrated.
FIG. 13E is a bar graph presenting the colony-forming unit (CFU) data of cultures treated with an RAR antagonist AGN 194310, an RXR antagonist LGN 100754 and a combination thereof. Comparable CFU levels determined 3 and 5 wreeks post seeding are evident. A marked increase in CFU in cultures treated writh the RAR and RXR combination, as compared with the untreated control 1s (cytokines only), the RAR antagonist and the RXR antagronist treatments is demonstrated.
FIG. 14 is a bar graph presenting the density of CD3«4+ cells enumerated inn 3 weeks culture. The cell culture was supplemented with SCF, TPO, FLt3,
IL-6 and IL-3 cytokines, with or without nicotinamide at | mM and 5 mM concentrations. A marked increase in CD34+ cells density in the nicotinamide treated cultures is demonstrated.
FIG. 15 is a bar graph presenting the data obtained bby FACS analysis of
CD34+/CD38- cells in 3 weeks culture. The cell culture wass supplemented with
SCF, TPO, FLt3, IL-6 and IL-3 cytokines, with or without nicotinamide at 1 mM and 5 mM concentrations. A marked increase in CD34+/CD38- cell d ensity in the nicotinamide treated cultures is demonstrated. . FIG. 16 is a bar graph presenting the data obtained bby FACS analysis of
CD34+/Lin- cells in 3 weeks culture. The cell culture was supplemented with
SCF, TPO, FLt3, IL-6 and IL-3 cytokines, with or withomt nicotinamide at 1 mM and 5 mM concentrations. A marked increase in CD34+/Lin- cell density in the nicotinamide treated cultures is demonstrated. } FIG. 17 is a bar graph presenting the data obtained by FACS analysis of ] CD34+/(HLA-DR38)- cells in 3 weeks culture. The cell culture was 5s supplemented with SCF, TPO, FLt3, IL-6 and IL-3 cytokines, with or without nicotinamide at 1 mM amd 5 mM concentrations. A marked increase in
CD34+/(HLA-DR38)- cell density in the nicotinamide treated cultures is demonstrated.
FIG. 18a is a dot plot presenting a FACS analysis of re-selected CD34+ cells from a 3 weeks culture treated with cytokines, with or without 5 mM nicotinamide. The CD34+/CD38- cells are shown in the upper left part of the plot, demonstrating a marked increase of CD34+/CD38- cells in the nicotinamide treated culture.
FIG. 18b is a dot plot presenting a FACS analysis of re-selected CD34+ cells from a 3 weeks culture treated with cytokines, with or without 5 mM nicotinamide, 3 weeks post reselection. The CD34+/Lin- cells are shown in the upper left part of the plot, demonstrating a marked increase of CD34+/Lin- cells in the nicotinamide treated culture.
FIG. 18c is a dot plot presenting a FACS analysis of re-selected CD34+ cells from a 3 weeks culture treated with cytokines, with or without 5 mM nicotinamide, 3 weeks post reselection. The CD34+/(HLA-DR38)- cells are shown in the upper left part of the plot, demonstrating a marked increase of
CD34+/+/(HLA-DR38)- cells in the nicotinamide treated culture.
The present invention is of methods of expanding a population of stern cells, while at the same tirme, substantially inhibiting differentiation of the cells ex-vivo and/or in-vivo. In one embodiment, the invention facilitates the efficient use as a therapeutic ex-vivo cultured cell preparation, which includes am expanded, large population of renewable stem cells, in which differentiation was inhibited while cell expansion was propagated. Specifically in this respect, the present invention can be used to provide ex--vivo expanded populations of : stem cells, which can be used for applications in hematopoietic cell transplantations, and in generation of stem cells suitable for genetic manipulations, which may be used for cellular gene therapy. Additional applications may include, but are not limited to, adoptive immunotherapy, treatments for multiple diseases, such as, for exxample, B-hemoglobinopathia, implantation of stem cells in an in ivo cis-differentiation and trans-differentiation settings, and ex vivo tissue engineering in cis-differentiation and trans-differentiation settimgs. The present invention further relates to expanded stem cell preparations and to articles-of-manufacture for preparing same.
The present invention discloses the uses of various molecules (also referred to herein as agents), for interfering wwith CD38 expression and/or activity, thereby inducing ex-vivo expansion of stem cell populations, resulting, when applied, for example, to hematopoietic stem cells, in large numbers of undifferentiated CD34/Lin° (CD33, CD14, CID15, CD4, etc), as well as
CD34/CD38" cells, especially CD34"; /Lin ce=lls. This novel and versatile technology may be used for ex-vivo and/or in-vivo expansion of stem cells, of hematopoietic and other origins, maintaining theiw self-renewal potential for any in-vivo or ex-vivo application which requires a lar_ge population of stem cells.
While reducing the present invention to practice, it was unexpectedly found that a series of molecules that are capable of interfering with CD38 expression and/or activity, repress the process of differentiation of stem cells and stimulates and prolongs, for up to 16-18 weeks, the phase of active cell proliferation and expansion ex-vivo. Following about 16-18 weeks of } expansion, the cells begin to differentiate; hence, the effect of these molecules is reversible. In other words, treating the cells ex -vivo as herein described does not result in the cells transforming into a cell line .
This wmnexpected effect was surprisingly obtained when the source of cells was CD34" enriched hematopoietic cells (stem and early progenitor cells) ) and, most surprisingly, also when the source of cells included the entire fraction } of mononuclear blood cells (whole fraction of white blood cells, which includes stem, progemitor and committed cells) were used. As is described in the
Background section, presently there is no disclosed technology by which to expand non-enriched stem cells.
Furthesrmore primary hepatocyte cultures incubated with agents such as retinoic acid receptor antagonists of the RAR and RXR super families, revealed an increase in the proportion of cells producing a-fetoprotein, hence inducing the proliferation of early hepatocyte populations. Antagonist-treated hepatocyte cultures grown without cytokines persisted for at least 3 weeks in culture, a "finding in stark contrast to previous data indicating an almost impossibility in growing prirmary hepatocytes for extended periods of time in culture, especially in the absence of cytokines (Wick M, et al. ALTEX. 1997; 1-4(2): 51-56; Hino
H, et al. Biochem Biophys Res Commun. 1999 Mar 5;256(1): 184-91; and
Tateno C, and Yoshizato K. Am J Pathol. 1996; 148(2): 383-92).
Supplementation with growth factors alone was insufficient to stimulate hepatocyte proliferation, only RAR antagonist treatment of hepatocyte cultures resulted in the proliferation of early hepatocyte populations and in their persistence i n culture, evident even following first and second passages.
This mewly discovered effect of the molecules useable: in context of the present invesntion was used for maximizing the ex-vivo expansion of various types of cell s as is further detailed hereinunder and exemplifieed in the Examples section that follows.
The principles and operation of the present invention may be better . understood with reference to the drawings and accompanying descriptions and examples.
Before explaining at least one embodiment of the invemtion in detail, 1t is to be understood that the invention is not limited in its applic ation to the details of construction and the arrangement of the components set foxth in the following description or illustrated in the Examples section. The irvention is capable -of other embodiments or of being practiced or carried out in various ways. Also, it is to be understood that the phraseology and terminology employed herein is for the purpose of description and should not be regarded as limiting.
CD38 is a member of an emerging family of cytosolic and membrame-bound enzymes whose substrate is nicotinamide adenine dinucleotide (NAD). Two of the metabolites produced by CD38, c ADPR and
NAADP", have been shown to induce the release of intracellular calcium in cells isolated from tissues of plants, invertebrates and mammals, suggesting that these metabolites may be global regulators of calcium responses (Lee et al., 1999
Biol. Chmem. 380;785-793).
Recently, it has been reported that granulocytic differentiation of the human committed cell line HL-60 cells can be induced by retinoic acid and is accompanied by a massive expression of CD38. Concomitant with CD38 expressi on was the accumulation of cADPR, and both time courses preceded the onset of differentiation, suggesting a causal role for CD38. C onsistently, treatment of HL-60 cells with a permeant inhibitor of CD38, nicotinamide, inhibited both the CD38 activity and differentiation. More specific blockage of
CD38 expression was achieved by using morpholino antisense oligo-nucleotides targetingg its mRNA, which produced a corresponding inhibition of differen tiation as well (Munshi CB, Graeff R, Lee HC, J Biol Cherm 2002 Dec 20,;277(51):49453-8).
Other studies have shown an opposite effect of CD38 signaling on progenitor cell differentiation. Short term treatment of human progenitor cells with cADPR mediated a significant increase in colony size and cokony output, implying a direct correlation between CD38 signaling and ex-viv o stem cell expansion (Podesta (2000) FASEB J. 14:680-690). In a more recent study reported by the same group, the effects of cADPR on engraftment of hemopoietic stem cells into irradiated NOD/SCID mice were addressed : (Podesta (2002) FASEB J. Dec 3 epub ahead of print). In this study a dual effect of cADPR on human hemopoietic progenitors was demonstrated in vivo, essentially, enhanced proliferation of committed progenitors responsible for improvement of short-term engraftment; and expansion of human stem cells with increased long-term human engraftment into secondary recipients. Hence, these results suggest the use of cADPR to achieve long-term expansion of human stem cells.
Thus, the prior art studies conducted on human stem cells, thus far, teach the use of cADPR, a product resulting from CD38 catalysis, for ex-vivo or in-vivo expansion of human stem cells.
While reducing the present invention to practice, the present inventors have suprisingly uncovered that inhibition of CD38 activity or expression results in ex-vivo expansion of human stem cells and, at the same time, in limited differentiation of the cells.
Evidently, the prior art described above teaches away from the present invention.
Retinoid receptors such as RAR, RXR and VDR and their agonists, such as Vitamin A and it’s active metabolites and Vitamin D and it’s active metabolites are involved in the regulation of gene expression pathways associated with cell proliferation and differentiation.
Vitamin D, which was shown to be a differentiation inducer of myelomonocytic cells, transduces its signals via induction of hetrodimerization of the RXR- VDR retinoid receptors (28), whereas RAR-RXR or RXR-RXR hetrodimerization is essential for retinoids inducing granulocytic differentiation.
It was shown that the retinoids are essential for the maintenance of : normal differentiation in many tissues. For example, in the epithelial system (29), retinoid-deficient tissues acquire a pre-malignant phenotype, which is characterized by enhanced mitotic activity and loss of differentiation (30). The
RAR-B gene is expressed in normal epithelial tissue, where its expression is up-regulated by treatment with retinoic acid (31, 320). In many malignant cell lines derived from various carcinomas the level of RAR-B2 mRNA is decreased or undetectable (33-37), indicating that the specific loss of RAR-2 mRNA ) expression may be an important event in tumorogenessis.
The disruption of retinoic acid receptor (RAR) activity characterizes the human acute promyelocytic leukemia (APL) and is associated with a block of granulocytic differentiation, indicating that RARs are critical regulators of normal myeloid differentiation. Moreover, knockout mice, deficient in retinoic acid receptors display an in vitro block to granulocyte differentiation (38, 39).
Although the above evidence clearly portrays an important role for RARs in regulating myelopoiesis, several critical questioms remain unanswered. If
RAR activity is ligand concentration-dependent, then what is the mechanism by which RAR activity regulates myeloid differentiation of cells that are exposed to the uniform "physiological" concentrations of retiroids that are presumably present in blood and bone marrow? Most importantly from a clinical standpoint, why do only the acute pro-myelocytic leukzemic cells (APL) exhibit a dramatic response to retinoids while the other 90 % of acute myelogenous - leukemias do not, even though these other acute myelogenous leukemias express normal RARs (40)?
The biological effect of retinoids and retin oid receptors on normal, non-leukemic, hematopoietic stem cells was reported by Purton et al. (41).
Purton et al. (41) demonstrated that pharmacological levels (1 pmol) of all-trans-retinoic-acid (ATRA) enhanced the generation of colony-forming cell (CFC) and colony-forming unit-spleen (CFU-S) in liquid suspension cultures of
Lin" c-kif’ Sca-1" murine hematopoietic precursors. Purton et al. (41) further investigated the effects of ATRA as well as am RAR antagonist, AGN : 193109,0n the generation of transplantable cells, including pre-CFU-S, short-term repopulating stem cells (STRCs), and lomg-term repopulating stem cells (LTRCs). Purton et al. (41) demonstrated that ATTRA enhanced the ex-vivo maintenance and production of competitive repopul ating STRCs and LTRCs
4s from Linc-kif' Sca-1" cells cultured in liquid suspension for 14 days. In addition, ATRA prevented the differentiation of theses primitive stem cells into meore mature pre-CFU-S during the 14 days of culthare. In marked contrast,
Linc-ki* Sca-1* cells cultured with AGN 193109, an RAR antagonist, for 7 s days had virtually no short- or long-term repopulating ability, but displayed an approximately 6-fold increase in the pre-CFU-S population. Purton et al. (41) conclusion from these studies was that the agonist to R_AR, namely retinoic acid, enhances the maintenance and self-renewal of short- amd long-term repopulating stem cells. In contrast, the RAR antagonist AGN 193109 abrogates reconstituting ability, most likely by promoting the differentiation of the primitive stem cells. Purton et al. (41) argue that these results imply an important and unexpected role of retinoids in regulatin g hematopoietic stem cell di ferentiation (41).
Whereas retinoids accelerates the growth and differentiation of granulocyte progenitors in cytokine-stimulated cultures of purified CD34" cells (42), at the stem cell level, the retinoids show an opposite effect.
Although in a non-hematopoietic tissue, but in accordance with Purton et al. (41), Kamei also demonstrated that retinoids, especially all-trans-retinoic-acid, inhibit the differentiation of pre -adipose cells (43).
Hence, in the hematopoietic system, nuclear retinoid receptors were strongly implicated in pathways controlling and promoting downstream differentiation of lineage-committed cells. As was sh own in detail for several leukemia cell line models, such as HL-60, NH4, and 32D, which are lineage committed cells that are blocked at the myeloblast ox promyelocytic stage of differentiation, inactivation of these receptors by speci fic antagonists, antisense or transduction with truncated receptors is associated with inhibition of induced granulocytic and monocytic differentiation.
In contrast to normal cells, in leukemia there is a disruption between regulatory pathways controlling cell proliferation amd differentiation. These pathways are strictly coupled in normal cells. The only exception in which these two -processes, proliferation and commitment to differentiation. are not coupled, is the self-renewal proliferation pathway of the stem cells. Therefore, all the abowe studies do not teach the role of retinoid receptors at the stem cell level altogether (19, 22, 64).
Whi le reducing the present invention to practice it was demonstrated that retinoic acid antagonists, when added to ex-vivo hematopoietic or hepatocyte cultures for only a limited, short-term period, enable extended long-term expansion of self-renewable stem cells.
The antagonists did not have any significant positive or negative effect on overall cell and CD34" cell expansion during the short-term cultures. In addition, CD34" antigen is expressed on committed as well as multi potent stem cells. Only a small fraction of the entire CD34" cell population, the
CD34'/CD-38 and CD34'/Lin cells, belong to the stem and early proge nitor cell compartme=nt.
Ana lysis of the content of these two rare subpopulations in two weeks ex-vivo cultures revealed that cultures supplemented with a RAR amtagonist contained “higher percentages of CD34%/CD38 cells and CD34*/Lin" cells as compared to cultures treated only with the early acting cytokines
Thrombopoietin (TPO), interleukin-6 (IL-6), an FLT-3 ligand and stem cell factor (SCF). The antagonist completely abolished the expression of the CD38 antigen. Also there was inhibition of a variety of other lineage-specific (Lin) antigens. The effect of the antagonist is specific and it is apparently targeted to key regulatory genes located at the checkpoint of self-renewal and cornmitment to differemtiation decision. These conclusions are derived from the results described Therein in the Examples section, showing that the RAR antagonist down regulates only the expression of differentiation associated anti gens, but not of anti_gens associated with stem cell phenotype such as the CD34 antigen.
The percentages and absolute numbers of CD34" cells were not affect ed by the antagonist during the short-term culture.
Further support for antagonist-specific effects on regulatory events of self-renewal and commitment to differentiation comes from experiments conducted herein with primary and passaged hepatocyte cultures. Primary cultures incubated with the antagonists revealed an increase in the proportion of } cells producing a-fetoprotein, and in the number of histologically distinct oval cells, events associated with proliferation of early hepatocyte populations.
These early hepatocyte populations persisted for at least 3 weeks in culture, even in the absence of supplemental cytokines, a most unprecedented finding.
Furthermore, supplementation of the cultures with growth factors had no effect on the proliferation of early hepatocyte populations, however RAR antagonist treatment enabled expansion of this population even following first passage, and demonstrated significantly expanded hepatocyte populations following second passage, further indicating a role for antagonists in cellular self-renewal capability. :
In addition to its effect on short-term cultures, while reducing the present invention to practice, it was demonstrated that short-term treatment with the antagonist molecule also enabled the long-term ex-vivo expansion and self-renewal of stem cells, e.g. CD34" /Lin” and CD34738" cells. Interestingly, limited exposure to the antagonist was sufficient to produce a significant and impressive prolongation of the long and extended long-term cultures as demonstrated by FACS analysis of stem cells and the functional LTC-CFUc.
During the long and extended long-term cultures, the content of CFUc and
CFU-mix impressively increased as compared to the content of CFU in cultures treated only with the cytokines, which actually decreases during the long-term cultures. In fact, many of the control cultures were unable to maintain any CFU potential in the long and extended long-term culture. In contrast to cultures treated for 3 weeks with the antagonist, which showed a dramatic and continuous increase of CFU-mix during the extended long-term culture period, cytokine-only treated cultures did not enable the expansion or even the maintenance of mix-colonies during the entire culture period. Expansion of stem cells, as revealed from the phenotype characterization, is in complete agreement with the long-term self-renewal potential as measured by the functiomal LTC-CFUc assay. Both assays demonstrate superior and prolonged ’ expansion of self-renewing stem cells in cultures pulsed with he antagonist } molecule.
At has been shown that RAR antagonists inhibited RA induced granulocytic differentiation of committed, promyelocytic HL-60 cells (25). It was also shown, that gene transfection of a truncated RAR inhibited the response of mouse derived myeloid leukemic cell line, 32D, to G-CSF (22).
These studies, however, were performed with leukemic, lineage committed cell lines and specifically show only inhibition of granulocytic differentiation induced by RA or G-CSF. Hence, no regulation at the stem cell level can be concluded from the above studies.
The study presented herein is the first to demonstrate that an RAR antagomist molecule can regulate ex-vivo differentiation processes of normal stem cells.
As opposed to Purton et al. (41), whose teachings are described above, it is demonstrated herein, using antagonist molecules to retinoid receptors and human. stem cell cultures, that retinoid receptors are involved in the regulation of stem cell self-renewal. It is further demonstrated herein that -the addition of these molecules for only a limited, short-term period to the ex-vivo cultures media enables the continuous proliferation of stem cells with neo alteration of their phenotype for extended time periods. Furthermore, these effects of retinoi ¢ acid receptor antagonists did not involve any cell transformation and do not result in any cell line formation.
Opposite to cell lines occasionally obtained by transduction with a truncated, dominant negative RAR (22-23), it is shown herein th at, whether the antagosnist was supplemented for only the first two to three weeks or continuously for the entire culture period, all cultured cells undlerwent normal myeloid, erythroid and lymphoid differentiation and completely lost any cell prolifesration ability 16-18 weeks after the initiation of the culture s.
As opposed to genetic modifications obtained by transduction procedures that induce infinitive alterations in gene expression and cell functions (unless the transduced gene is shut off), continuous treatment with the RAR antagonist ; did not result in infanitive expansion or maintenance of CD34"/Lin” phenotype.
Therefore, the mechanism of activity of a dominant negative receptor is very different than the mechanism of RAR antagonist molecules. Additional supportive data of a different mode of action comes from experiments demonstrating that cells transduced with a dominant negative RAR remain immature even in the presence of a differentiation-inducers (22), which definitely is not the case with normal, non leukemic cells treated with an RAR antagonist.
Starting with normal mouse derived bone marrow (BM) cells and following transduction with a truncated RAR receptor, Collins (23) occasionally obtained a mouse-stem cell line. However, using the same mouse-dexrived cells and an RAR antagonist, Purton et al. (41) demonstrated that an RAR antagonist accelerated stem cell differentiation, whereas retinoic acid supported ex-vivo expansion of stem cells (41). These data provided by Purton et al. (41) and
Collins (23) favor the existence of two different, unrelated mechanisms as herein discussed.
In addition to the retinoid receptors effect on hematopoietic tis sue, it was demonstrated that receptors belonging to the retinoid receptor amily are involved in differentiation pathways controlling normal embryogene sis as well as adult tissues development.
Multiple fetal anomalies occur in vitamin A deficient animals as well as in retinoic acid receptor gene 'knockout' mice, indicating that retinoic acid (an active metabolite of vitamin A) performs some essential functions in normal : development. Retinoids are also long known to influence skin meorphology.
When antagonists to RAR are given late in gestation, 14 days post conception (dpc), they delay differentiation and maturation of the fetal skim and hair follicles in mouse (65).
RXR-alpha ablation results in epiderrmal interfollicular hyperplasia with keratinocyte hyperproliferation and ab errant terminal differentiation, accompanied by an inflammatory reaction of the skin. It was further shown that
RXR-alpha/VDR heterodimers play a major role in controlling hair cycling, and 5s suggested that additional signaling pathways mediated by RXR-alpha heterodimerized with other nuclear receptors are involved in postnatal hair follicle growth (66).
Taking together the above data, it is concluded that at the stem cell level, positive and negative signals via receptors belonging to the retinoid receptor family, control the physiological balance between self-renewal and commitment to differentiation of normal hematopoietic and non-hematopoietic stem cells.
The novel method of ex-vivo down-regulation of cell differentiation, enabled large expansion of embryonic and adult, hematopoietic and non-hematopoietic stem cells and may bee utilized for transplantation of hematopoietic cells, gene therapy, cell replacement therapy or any other application, which requires increasing numbers of stem cells.
The utilization of a small molecule for obtaining large stem cell expansion is a feasible, economical and safe method.
Hence, in the course of the present study it was found that a series of chemical agents that bind retinoic acid, retinoid X and/or Vitamin D receptors interfere with proper receptor signaling. Thi s interference can reversibly inhibit (delay) the process of ex-vivo differentiation of stem cells, thereby stimulating and prolonging active ex-vivo stem cell expamsion.
This newly discovered effect of receptor antagonist application is utilizable for maximizing the ex-vivo expansion of various types of cells including hematopoietic cells, hepatocytes and embryonic stem cells. Such ex-vivo expanded cells can be applied in several clinical situations. The following lists a few.
Hematopoietic cell transplantation: Transplantation of hematopoietic cells has become the treatment of choice for a variety of inherited or malignant diseases. While early transplantation procedures utilized the entire bone marrow (BM) population, recently, more defined populations, enriched for stem cells (CD34 cells) have been used (44). In addition to the marrow, such cells could be derived from other sources such as peripheral blood (PB) and neonatal 5s umbilical cord blood (CB) (45). Compared to BM, transplantation with PB cells shortens the period of pancytopenia and reduces the risks of infection and bleeding (46-48).
An additional advantage of using PB for transplantation is its accessibility. The limiting factor for PB transplantation is the low number of circulating pluripotent stem/progenitor cells.
To obtain enough PB-derived stem cells for transplantation, these cells are "harvested" by repeated leukophoresis following their mobilization from the marrow into the circulation by treatment with chemotherapy and cytokines (46-47). Such treatment is obviously not suitable for normal donows.
The use of ex-vivo expanded stem cells for transplantation has the following advantages (49-50): :
It reduces the volume of blood required for reconstitution of an adult hematopoietic system and may obviate the need for mobilization and leukophoresis (46).
It enables storage of small number of PB or CB stem cell s for potential future use.
In the case of autologous transplantation of recipients with malignancies, contaminating tumor cells in autologous infusion often contribute to the recurrence of the disease (46). Selecting and expanding CD34" stem cells will reduce the load of tumor cells in the final transplant.
The cultures provide a significant depletion of T lymphocytes, which may be useful in the allogeneic transplant setting for reducing graft-versus-host disease.
Clinical studies indicate that transplantation of ex-vivo expanded cells derived from a small number of PB CD34 cells can restore he matopoiesis in
» o 52 recipients treated with high doses of chemotherapy, although the results do not yet allow firm conclusions about long term in-vivo hematopoietic capabilities of . these cultured cells (46-47).
For successful transplantation, shortening of the duration of the cytopenic phase, as well as long-teram engraftment, is crucial. Inclusion of intermediate and late progenitor celks in the transplant could accelerate the production of donor-derived mature cells thereby shortening the cytopenic phase. It is important, therefore, that ex-vivo expanded cells include, in addition to stem cells, more differentiated progenitor cells in order to optimize short-term recovery and long term restoration of hematopoiesis. Expansion of intermediate and late progenitor cells, especially those committed to the neutrophilic and megakaryocytic lineages, concomitarit with expansion of stem cells, should serve this purpose (51).
Such cultures may be useful in restoring hematopoiesis in recipients with completely ablated bone marrow, as well as in providing a supportive measure for shortening recipient bone marrow recovery following conventional radio- or chemo-therapies.
Prenatal diagnosis of genetic defects in scarce cells: Prenatal diagnosis involves the collection of embryonic cells from a pregnant woman, in utero, and analysis thereof for genetic defects. A preferred, non-invasive, means of collecting embryonic cells involves separation of embryonic nucleated red blood cell precursors that have infiltrated into peripheral maternal circulation.
However, since the quantities of these cells are quite scarce, a further application of the present inventiors would be the expansion of such cells according to methods described hereim, prior to analysis. The present invention, therefore, offers a means to expand embryonic cells for applications in prenatal diagnosis.
Gene therapy: For successful long-term gene therapy, a high frequency of genetically modified stem cells wi th transgenes stably integrated within their genome, is an obligatory requirement. In BM tissue, while the majority of cells are cycling progenitors amd precursors, stem cells constitute only a small fraction of the cell population and most of them are in a quiescent, non-cycling state. Viral-based (e.g., retroviral) vectors require active cell division for integration of the transgene into the host genome. Therefore, gene transfer into fresh BM stem cells is highly inefficient. The ability to expand a purified population of stem cells and to regulate their cell division ex-vivo would provide for an increased probability of their genetic modification (52).
Adoptive immunotherapy: Ex-vivo-expanded, defined lymphoid subpopulations have been studied and used for adoptive immunotherapy of various malignancies, immunodeficiencies, viral and genetic diseases (53-55).
The treatment enhances the required immune response or replaces deficient functions. This approach was pioneered clinically by Rosenberg ef al. (56) using a large number of autologous ex-vivo expanded non-specific killer T cells, and subsequently ex-vivo expanded specific tumor infiltrating lymphocytes.
Functionally actives, antigen-presenting cells could be grown from a starting population of CD 34" PB cells in cytokine-supported cultures, as well.
These cells can present soluble protein antigens to autologous T cells in-vitro and, thus, offer new prospects for the immunotherapy of minimal residual disease after high dose chemotherapy. Ex-vivo expansion of antigen-presenting dendritic cells has been studied as well, and is an additional promising application of the currently proposed technology (57-59).
Ex-vivo expansion of non-hematopoietic stem and progenitor cells:
Additional applications of the technology proposed herein include the possibility for ex-vivo expansion of non-hematopoietic stem and progenitor cells, including, for example, neural stem cells, oligodendrocyte progenitors, } and the like.
Myelin disorders form an important group of human neurological diseases that are, as yet, incurable. Progress in animal models, particularly in transplanting cells of the oligodendrocyte lineage, has resulted in significant focal remyelination and physiological evidence of restoration of function (60).
Future therapies could involve both transplantation and promotion of endogenous repair, and the two approaches could be combined with ex-vivo manipulation of donor tissue.
U.S. Pat. No. 5,486,359 illustrates that isolated human mesenchymal stem cells can differentiate into more than one tissue type (e.g. bone, cartilage, muscle, or marrow stroma) and provides a method for isolating, purifying, and expanding human mesenchymal stem cells in culture.
U.S. Pat. No. 5,736,396 provides methods for in-vitro or ex-vivo lineage-directed induction of isolated, culture-expanded human mesenchymal stem cells comprising mesenchymal stem cell contact with a bioactive factor effective in inducing stem cell differentiation into a lineage of choice. Further disclosed is a method including introducing culture-expanded lineage-induced mesenchymal stem cells into the original, autologous host, for purposes of mesenchymal tissue regeneration or repair.
U.S. Pat. No. 4,642,120 provides compositions for repairing defects in cartilage and bones. These are provided in gel form either as such, or embedded in natural or artificial bones. The gel comprises certain types of cells. Cells may be committed embryonal chondrocytes or any mesenchymal-origin cells which potentially can be converted to become functional cartilage cells, typically by the inclusion of chondrogenic inducing factors, in combination with fibrinogen, antiprotease and thrombin.
U.S. Pat. No. 5,654,186 illustrates that blood-borne mesenchymal cells proliferate in culture, and in-vivo, as demonstrated in animal models, and are capable of migrating into wound sites from the blood to form skin.
U.S. Pat. No. 5,716,411 reveals a method of skin regeneration of a i wound or burn in an animal or human. This method comprises the steps of initially covering the wound with a collagen glycosaminoglycan (GC) matrix, facilitating mesenchymal cell and blood vessel infiltration from healthy underlying tissue within the grafted GC matrix. Subsequently a cultured epithelial autograft sheet grown from epidermal cells taken from the animal or human at a wound-free site is applied on the body suxface. The resulting graft has excellent inclusion rates and has the appearances, growth, maturation and differentiation of normal skin.
U.S. Pat. No. 5,716,616 provides methods for treating recipients suffering from diseases, disorders or conditions characterized by bone, cartilage, or lung defects. The methods comprise intravenous administration of stromal cells isolated from normal, syngeneic individuals, or &ntravenous administration of stromal cells isolated from the recipient subsequent to correction of the genetic defect in the isolated cells. Methods of introducing genes into a recipient individual are also disclosed. The methods «comprise obtaining a bone marrow sample from either the recipient individual or a matched syngeneic donor and isolating adherent cells from the sample. Once isolated, donor adherent cells are transfected with a gene and administered to a recipient individual intravenously. Compositions comprising -isolated stromal cells that include exogenous genes operably linked to regulatory sequences are disclosed, as well.
In each of the above examples, non-hematopwietic stem and progenitor cells are used as an external source of cells for replen_ishing missing or damaged cells of an organ. Such use requires high levels of stem and progenitor cell expansion for successful application of the proposed therapies. Because of this pressing need for large numbers of expanded stem and progenitor cell populations, the methods and applications of the present invention address a critical niche in any of the methods disclosed in the above U.S. patents. 2s Additional examples for both ex-vivo and in-wivo applications:
Additional applications of stem and progenitor cell expansion include skin regeneration, hepatic regeneration, muscle regeneration and stimulation of bone growth for applications in osteoporosis.
Mobilization of bone marrow stem celds into peripheral blood (peripheralization): Effects of retinoic acid, retinoid and/or Vitamin D receptor antagonists have additional in-vivo applications. As mentioned above,
PB-derived stem cells for transplantation are "harvested" by repeated leukoprhoresis following their mobilization from the marrow into the circulation i by treatment with chemotherapy and cytokines (46-47).
The use of chemotherapy is, of course, not suitable for normal donors.
Administration of antagonists, into the donor could increase the marrow stem cell pool, which is then mobilized into the periphery by endogenous or injected
G-CSF.
Stimulation of fetal hemoglobin production: Increased fetal hemoglobin has been shown to ameliorate clinical symptoms in recipients suffering [- hemoglobinopathies, such as sickle cell anemia and B-thalassemia (61).
Fetal hemoglobin, which normally comprises 1 % of the total hemoglobin, becomes elevated in accelerated erythropoiesis (e.g., following } acute hemolysis or hemorrhage or administration of erythropoietin) (62).
It has been suggested that this phenomenon is associated with acceleration of the maturation/differentiation process of erythroid precursors (63). Administration of retinoic acid, retinoid and/or Vitamin D receptor antagonists to recipients with B-hemoglobinopathies might first increase and synchronize their early erythroid progenitor pool, by blocking progenitor differentiation.
Following cessation of administration of the drug and its removal from the body, this early population then might undergo accelerated maturation, which may result in an elevated production of fetal hemogl obin.
The following description provides more details relating to specific aspects and embodiments of the present invention.
According to one aspect of the present invention there is provided a : method of ex-vivo expanding a population of stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo. The method according to this aspect of the present invention is effected by providing the stem cells with ex-vivo culture conditions for ex-vivo cell proliferation and, at the same timme, for reducing an expression and/or activity of CD38, thereby expanding the population of stem cells while at the same time, substantially ) inhibiting di fferentiation of the stem cells ex-vivo.
As used herein, the phrase “stem cells” refers to pluripotent cells that, given the right growth conditions, may develop to any cell lineage present in the organism from which they were derived. The phrase, as used herein, refers both to the earliest renewable cell population responsible for generating cezll mass in a tissue or body and the very early progenitor cells, which are somewhat more differentiate=d, yet are not committed and can readily revert to become a part of the earliest mwenewable cell population. Methods of ex-vivo culturing stem cells of different tissue origins are well known in the art of cell culturing. To this effect, see for example, the text book "Culture of Animal Cells - A Manual of
Basic Techmique" by Freshney, Wiley-Liss, N. Y. (1994), Third Edlition, the teachings of which are hereby incorporated by reference.
As wsed herein the term "inhibiting" refers to slowing, dlecreasing, delaying, preventing or abolishing.
As ussed herein the term "differentiation" refers to relatively generalized or specialized changes during development. Cell differentiation of various lineages is a well-documented process and requires no further description herein. As used herein the term differentiation is distinct from maturation which is a process, although some times associated with cell division, in which a specific cell type mature to function and then dies, e.g., via programmmed cell death.
The gpohrase “cell expansion” is used herein to describe a proc-ess of cell proliferatior substantially devoid of cell differentiation. Cells that undergo expansion hence maintain their cell renewal properties and are -oftentimes referred to herein as renewable cells, e.g., renewable stem cells.
As u:sed herein the term "ex-vivo" refers to a process in which cells are removed from a living organism and are propagated outside the orgamism (e.g,
in a test tube). As used herein, the term "ex-vivo", however, does not refer to a process by which cells known to propagate only in-vitro, such as various cell lines (e.g, HL-60, MEL, HeLa, etc.) are cultured. In other words, cells . expanded ex-vivo according to the present invention do not transform into cell lines in that they eventually undergo differentiation.
Providing the ex-vivo grown cells with conditions for ex-vivo cell proliferation include providing the cells with nutrients and preferably with one or more cytokines, as is further detailed hereinunder.
As mentioned hereinabove, concomitant with treating the cells with conditions which allow for ex-vivo the stem cells to prolifetare, the cells are short-term treated or long-term treated to reduce the expression and/or activity of CD38.
Reducing the activity of CD38 is effected by providing the cells with an agent that inhibits CD38 activity (i.e., a CD38 inhibitor).
As used herein a “CD38 inhibitor’ refers to an agent which is capable of down-regulating or suppressing CD38 activity in stem cells.
A CD38 inhibitor according to this aspect of the present invention can be a “direct inhibitor” which inhibits CD38 intrinsic activity or an “indirect inhibitor” which inhibits the activity or expression of CD38 signaling components (e.g., the CADPR and ryanodine signaling pathways) or other signaling pathways which are effected by CD38 activity.
According to presently known embodiments of this aspect of the present invention, nicotinamide is a preferred CD38 inhibitor.
Hence, in one embodiment, the method according to this aspect of the present invention is effected by providing the cells either with nicotinamide itself, or with a nicotinamide analog, a nicotinamide or a nicotinamide analog . derivative or a nicotinamide or a nicotinamide analog metabolite.
As used herein, the phrase “nicotinamide analog” refers to any molecule that is known to act similarly to nicotinamide. Representative examples of nicotinamide analogs include, without limitation, benzamide, nicotinethioamide
( the thiol analog of nicotinamide), nicotin ic acid and cx-amino-3-indolepropionic acid.
The phrase “a nicotinamide or a nicotinamide analog derivative” refers . to any structural derivative of nicotinamide itself or of an analog of nicotinamide. Examples of such derivatives include, -without limitation, substituted benzamides, substituted nicotinamides and nicostinethioamides and
IN-substituted nicotinamides and nicotinthioamides.
The phrase “a nicotinamide or a nicotinamide analog metabolite” refers to products that are derived from nicotinamide or from analegs thereof such as, for example, NAD, NADH and NADPH.
Alternatively, a CD38 inhibitor according to this aspect of the present invention can be an activity neutralizing antibody which binds for example to the CD38 catalytic domain, thereby inhibiting CD38 catalytic activity. It will be appreciated, though, that since CD38 is an intracellular protein measures are taken to use inhibitors which may be delivered through the plasma membrane.
In this respect a fragmented antibody such as a Fab fragment (described hereinunder) is preferably used.
The term "antibody" as used in this invention includes intact molecules as well as functional fragments thereof, such as Fab, F(ab"),, and Fv that are capable of binding to macrophages. These functional antibody fragments are defined as follows:
Fab, the fragment which contains a monovalent antigen-binding fragment of an antibody molecule, can be produced by digestion of whole antibody with the enzyme papain to yield an intact light claain and a portion of one heavy chain;
Fab', the fragment of an antibody molecule that can be obtained by : treating whole antibody with pepsin, followed by reduction, to yield an intact light chain and a portion of the heavy chain; two Fab' fragments are obtained per antibody molecule;
(Fab'),, the fragment of the antibody that can be obtained by treatirg whole antibody with the enzyme pepsin without subsequent reduction; F(ab’), 1s a dimer of two Fab' fragm ents held together by two disulfide bonds; } Fv, defined as a genetically engineered fragment containing the variabele region of the light chain and the variable region of the heavy chain expressed as two chains; and
Single chain antibody ("SCA"), a genetically engineered molecule containing the variable region of the light chain and the variable region of the heavy chain, linked by a suitable polypeptide linker as a genetically fused single chain molecule.
Methods of making these fragments are known in the art. (See for example, Harlow and Lane, Antibodies: A Laboratory Manual, Cold Sprimg
Harbor Laboratory, New “York, 1988, incorporated herein by reference).
Antibody fragments according to the present invention can be prepared by expression in E. coli or mammalian cells (e.g. Chinese hamster ovary c ell culture or other protein expression systems) of DNA encoding the fragment.
Antibody fragments can be obtained by pepsin or papain digestion of whole antibodies by conventional methods. For example, antibody fragmemts can be produced by enzymatic cleavage of antibodies with pepsin to provide a 5S fragment denoted F(ab'),. This fragment can be further cleaved using a th iol reducing agent, and optionally a blocking group for the sulfhydryl groups resulting from cleavage of disulfide linkages, to produce 3.5S Fab' monovalent fragments. Alternatively, an enzymatic cleavage using pepsin produces two monovalent Fab' fragments and an Fc fragment directly. These methods are described, for example, by Goldenberg, U.S. Pat. Nos. 4,036,945 and 4,331,647, and references contained therein, which patents are hereby incorporated by reference in their entirety. See also Porter, R. R., Biochem. J., 73: 119-126, 1959. Other methods of cleaving antibodies, such as separation of heavy cha. ins to form monovalent light-heavy chain fragments, further cleavage of fragments,
or other enzymatic, chemical, or genetic techniques may also be used, so long as the fragments bind to the antigen that is recognized by the intact antibody.
Fv fragments comprise an association of Vy and V_ chains. This . association may be noncovalent, as described in Inbar et al., Proc. Natl Acad.
Sci. USA 69:2659-62, 1972. Alternatively, the variable chains can be linked by an intermolecular disulfide bond or cross-linked by chemicals such as glutaraldehyde. Preferably, the Fv fragments comprise Vy and Vy chains connected by a peptide linker. These single-chain antigen binding proteins (sFv) are prepared by constructing a structural gene comprising DNA sequences encoding the Vy and V_ domains connected by an oligonucleotide. The structural gene is inserted into an expression vector, which is subsequently introduced into a host cell such as E. coli. The recombinant host cells synthesize a single polypeptide chain with a linker peptide bridging the two V domains. Methods for producing sFvs are described, for example, by Whitlow and Filpula, Methods, 2: 97-105, 1991; Bird et al., Science 242:423-426, 1988;
Pack et al., Bio/Technology 11:1271-77, 1993; and Ladner et al., U.S. Pat. No. 4,946,778, which is hereby incorporated by reference in its entirety.
Another form of an antibody fragment is a peptide coding for a single complementarity-determining region (CDR). CDR peptides ("minimal recognition units") can be obtained by constructing genes encoding the CDR of an antibody of interest. Such genes are prepared, for example, by using the polymerase chain reaction to synthesize the variable region from RNA of antibody-producing cells. See, for example, Larrick and Fry, Methods, 2: 106-10, 1991.
Humanized forms of non-human (e.g., murine) antibodies are chimeric molecules of immunoglobulins, immunoglobulin chains or fragments thereof (such as Fv, Fab, Fab’, F(ab"), or other antigen-binding subsequences of antibodies) which contain minimal sequence derived from non-human immunoglobulin. Humanized antibodies include human immunoglobulins recipient antibody in which residues forsn a complementary determining region
(CDR) of the recipient are replaced by residues from a CDR of a non-human : species (donor antibody) such as mouse, rat or rabbit having the desired specificity, affinity and capacity. In some instances, Fv framework xesidues of : the human immunoglobulin are replaced by corresponding non-human residues.
Humanized antibodies may also comprise residues which are found neither in the recipient antibody nor in the imported CDR or framework sequences. In general, the humanized antibody will comprise substantially all of at least one, and typically two, variable domains, in which all or substantially all of the CDR regions correspond to those of a non-human immunoglobulin and all or substantially all of the FR regions are those of a human immunoglobulin consensus sequence. The humanized antibody optimally also will comprise at least a portion of an immunoglobulin constant region (Fc), typically that of a human immunoglobulin [Jones et al., Nature, 321:522-525 (1986); Riechmann et al., Nature, 332:323-329 (1988); and Presta, Curr. Op. Struct. Biol, 2:593-596 (1992)].
Methods for humanizing non-human antibodies are well known in the art.
Generally, a humanized antibody has one or more amino acid residues introduced into it from a source which is non-human. These non-human amino acid residues ate often referred to as import residues, which are typically taken from an import variable domain. Humanization can be essentially performed following the method of Winter and co-workers [Jones et al, Nature, 321:522-525 (1986); Riechmann et al., Nature 332:323-327 (1988); Verhoeyen et al., Science, 239:1534-1536 (1988)], by substituting rodent CD?Rs or CDR sequences for the corresponding sequences of a human antibody. Accordingly, such humanized antibodies are chimeric antibodies (U.S. Pat. No. 4,816,567), wherein substantially less than an intact human variable domain has been : substituted by the corresponding sequence from a non-human species. In practice, humanized antibodies are typically human antibodies in which some
CDR residues and possibly some FR residues are substituted by residues from analogous sites in rodent antibodies.
Human antibodies can also be produced using various techniques known in the art, including phage display libraries (Hoogenboom and Winter, J. Mol. : Biol, 227:381 (1991); Marks et al, J. Mol. Biol, 222:581 (1991)). The ] techniques of Cole et al. and Boerner et al. are also available for the preparation of human monoclonal antibodies (Cole et al., Monoclonal Antibodies and
Cancer Therapy, Alan R. Liss, p-. 77 (1985) and Boemer et al, J. Immunol, 147(1):86-95 (1991)]. Similarly, human can be made by introducing of human immunoglobulin loci into transgenic animals, e.g, mice in which the endogenous immunoglobulin grenes have been partially or completely inactivated. Upon challenge, human antibody production is observed, which closely resembles that seen in humans in all respects, including gene rearrangement, assembly, and antibody repertoire. This approach is described, for example, in U.S. Pat. Nos. 5,545,807; 5,545,806; 5,569,825; 5,625,126; 5,633,425; 5,661,016, and in the following scientific publications: Marks et al, 1s Bio/Technology 10, 779-783 (1992); Lonberg et al, Nature 368 856-859 (1994); Morrison, Nature 368 812-13 (1994); Fishwild et al, Nature
Biotechnology 14, 845-51 (1996), Neuberger, Nature Biotechnology 14, 826 (1996); Lonberg and Huszar, Intexn. Rev. Immunol. 13 65-93 (1995).
Alternatively, the method according to this aspect of the present invention can be effected by providing the ex-vivo cultured stem cells with an agent that down-regulates CD38 expression.
An agent that downregulates CD38 expression refers to any agent which affects CD38 synthesis (decelerates) or degradation (acelerates) either at the level of the mRNA or at the Jevel of the protein. For eaxmple, a small 25s interfering polynucleotide molecule which is designed to down regulate the expression of CD38 can be used according to this aspect of the present invention.
An example for a small interfering polynucleotide molecule which can down-regulate the expression of CD38 is a small interfering RNA or siRNA, such as, for example, the morpholino antisense oligonucleotides described by in
Munshi et al. (Munshi CB, Graeff R, Lee HC, J Biol Chem 2002 Dec 203277(51):49453-8), which includes duplex oligonucleotides which direct sequence specific degradation of mRNA through the previously described . mechanism of RNA interference (RNAi) (Hutvagner and Zamore (2002) Curr.
Opin. Genetics and Development 12:225-232).
As used herein, the phrase "duplex oligonucleotide” refers to an oli gonucleotide structure or mimetics thereof, which is formed by either a single self-complementary nucleic acid strand or by at least two complementary nu cleic acid strands. The "duplex oligonucleotide” of the present invention can be composed of double-stranded RNA (dsRNA), a DNA-RNA hybrid, single-stranded RNA (ssRNA), isolated RNA (i.e., partially purified RNA, essentially pure RNA), synthetic RNA and recombinantly produced RNA.
Preferably, the specific small interfering duplex oligonucleotide of the present invention is an oligoribonucleotide composed mainly of ribonucleic acids.
Instructions for generation of duplex oligonucleotides capable of mediating RNA interference are provided in www.amb ion.com.
Hence, the small interfering polynucleotide molecule according to the present invention can be an RNAi molecule (RNA intexference molecule).
Altematively, a small interfering polynucleotide molecule can be an oligonucleotide such as a CD38-specific antisense mmolecule or a rybozyme molecule, further described hereinunder.
Oligonucleotides designed according to the teachings of the present imvention can be generated according to any oligonucleotide synthesis method 2s kmown in the art such as enzymatic synthesis ox solid phase synthesis.
Equipment and reagents for executing solid-phase symthesis are commercially . awailable from, for example, Applied Biosystems. Any other means for such synthesis may also be employed; the actual synthesis of the oligonucleotides is wrell within the capabilities of one skilled in the art.
Oligonucleotides used according to this embodiment of the present invention are those having a length selected from a range of 10 to about 200 bases preferably 15-150 bases, more preferably 20-100 bases, most preferably ' 20-50 bases. ; The oligonucleotides of the present invention may comprise heterocyclic nucleosides consisting of purines and the pyrimidines bases, bonded in a 3' to 5' phosphodiester linkage.
Preferably used oligonucleotides are those modified in either backbone, internucleoside linkages or bases, as is broadly described hereinunder. Such modifications can oftentimes facilitate oligonucleotide uptake and resistivity to intracellular conditions.
Specific examples of preferred oligonucleotides useful according to this aspect of the present invemtion include oligonucleotides containing modified backbones or non-natural -internucleoside linkages. Oligonucleotides having modified backbones include those that retain a phosphorus atom in the backbone, as disclosed in "U.S. Patents Nos.: ,687,808; 4,469,863; 4,476,301; 5,023,243; 5,177,196; 5,18 8,897; 5,264,423; 5,276,019; 5,278,302; 5,286,717, 5,321,131; 5,399,676; 5,405,939; 5,453,496; 5,455,233; 5,466, 677; 5,476,925; 5,519,126; 5,536,821; 5,541,306; 5,550,111; 5,563,253; 5,571,799; 5,587,361; and 5,625,050.
Preferred modified oligonucleotide backbones include, for example, phosphorothioates, chiral phosphorothioates, phosphorodithioates, phosphotriesters, aminoakkyl phosphotriesters, methyl and other alkyl phosphonates including 3'-alkylene phosphonates and chiral phosphonates, phosphinates, phosphoramidates including 3'-amino phosphoramidate and aminoalkylphosphoramidates, thionophosphoramidates, thionoalkylphosphonates, thionoalkylphosphotriesters, and boranophosphates , having normal 3'-5' linkages, 2'-5' linked analogs of these, and those having inverted polarity wherein the adjacent pairs of nucleoside units are linked 3'-5' to 5'-3' or 2'-5' to 5-2". Various salts, mixed salts and free acid forms can also be used.
Alternatively, modified oligonucleotide backbones that do not include a phosphorus atom therein have backbones that are formed by short chain alkyl or ‘ cycloalkyl intermnucleoside linkages, mixed heteroatom and alkyl or cycloalkyl . internucleoside linkages, or one or more short chain heteroatomic or s heterocyclic internucleoside linkages. These include those having morpholino linkages (formed in part from the sugar portion of a nucleoside); siloxane backbones; sulfide, sulfoxide and sulfone backbones; formacetyl and thioformacetyl backbones; methylene formacetyl and thioformacetyl backbones; alkene containing backbones; sulfamate backbones; methyleneimino and methylenehydrazino backbones; sulfonate and sulfonamide backbones; amide backbones; and others having mixed N, O, S and CH, component parts, as disclosed in U.S. Pat. Nos. 5,034,506; 5,166,315; 5,185,444; 5,214,134, 5,216,141; 5,235,033; 5,264,562; 5,264,564; 5,405,938; 5,434,257; 5,466,677, 5,470,967; 5,489,677; 5,541,307; 5,561,225; 5,596,086; 5,602,240; 5,610,289; 5,602,240; 5,608,046; 5,610,289; 5,618,704; 5,623, 070; 5,663,312; 5,633,360; 5,677,437; and 5,677,439.
Other oligonucleotides which can be used according to the present invention, are those modified in both sugar and the internucleoside linkage, 1.e., the backbone, of the nucleotide units are repl aced with novel groups. The base units are maintained for complementation with the appropriate polynucleotide target. An example for such an oligonucleotide mimetic, includes peptide nucleic acid (PNA). A PNA oligonucleotide refers to an oligonucleotide where the sugar-backbone is replaced with an amide containing backbone, in particular an aminoethylglycine backbone. The bases are retained and are bound directly or indirectly to aza nitrogen atoms of the amide portion of the backbone. United } States patents that teach the preparation of PNA compounds include, but are not , limited to, U.S. Pat. Nos. 5,539,082; 5,714,33 1; and 5,719,262, each of which is herein incorporated by reference. Other backbone modifications, which can be used in the present invention are disclosed in U.S. Pat. No: 6,303,374.
Oligonucleotides of the present invention may also include base modificatioms or substitutions. As used herein, "unmodified" or "natural * bases include the purine bases adenine (A) and guanine (G), and the pyrimidine bases ) thymine (T), cytosine (C) and uracil (U). Modified bases include but are not . limited to other synthetic and natural bases such as 5-methylcytosine (5—me-C), 5s S5-hydroxymethyl cytosine, xanthine, hypoxanthine, 2-aminoadenine, 6—methyl and other alkyl derivatives of adenine and guanine, 2-propyl and other alkyl derivatives of adenine and guanine, 2-thiouracil, 2-thiothymin.e and 2-thiocytosime, S-halouracil and cytosine, 5-propynyl uracil and cytosine, 6-azo uracil, cytosine and thymine, 5-uracil (pseudouracil), 4-thiouracil, 8-halo, 8-amino, 8—thiol, 8-thioalkyl, 8-hydroxyl and other 8-substituted adenimes and guanines, S—halo particularly 5-bromo, 5-trifluoromethyl and other 5-subestituted uracils and cytosines, 7-methylguanine and 7-methyladenine, 8-azaguan.ine and 8-azaadenime, 7-deazaguanine and 7-deazaadenine and 3-deazaguankne and 3-deazaadernine. Further bases include those disclosed in U.S. Pat. No: 3,687,808, those disclosed in The Concise Encyclopedia Of Polymer Science
And Engineering, pages 858-859, Kroschwitz, J. I., ed. John Wiley & Sons, 1990, those disclosed by Englisch et al., Angewandte Chemie, Intermational
Edition, 1991, 30, 613, and those disclosed by Sanghvi, Y. S., Chapter 15,
Antisense Research and Applications, pages 289-302, Crooke, S. T. and Lebleu,
B.,ed., CRC Press, 1993. Such bases are particularly useful for increasing the binding affinity of the oligomeric compounds of the invention. These include 5-substituteed pyrimidines, 6-azapyrimidines and N-2, N-6 and O-6 substituted purines, including 2-aminopropyladenine, 5-propynyluracil and 5-propynylcytosine. 5-methylcytosine substitutions have been shown to increase nucleic acid duplex stability by 0.6-1.2 °C. [Sanghvi YS et al. (1993) A_ntisense
Research amd Applications, CRC Press, Boca Raton 276-278] and are presently , preferred ase substitutions, even more particularly when combined with 2'-O-methosxyethyl sugar modifications.
Another modification of the oligonucleotides of the invention involves chemically linking to the oligonucleotide one or more moieties or comjugates,
which enhance the activity, cellular distribution or cellular uptake of the oligonucleotide. Such moieties in clude but are not limited to lipid moieties such ’ as a cholesterol moiety, cholic acid, a thioether, e.g., hexyl-S-tritylthiol, a
B thiocholesterol, an aliphatic chain, e.g., dodecandiol or undecyl residues, a 5s phospholipid, e.g. di-hexadecyl-rac-glycerol or triethylammonium 1,2-di-O-hexadecyl-rac-glycero-3—H-phosphonate, a polyamine or a polyethylene glycol chain, or adamantane acetic acid, a palmityl moiety, or an octadecylamine or hexylamino-carbonyl-oxycholesterol moiety, as disclosed in
U.S. Pat. No: 6,303,374.
It is not necessary for all positions in a given oligonucleotide molecule to be uniformly modified, and in fact more than one of the aforementioned modifications may be incorporated in a single compound or even at a single nucleoside within an oligonucleotide.
As described hereinabove, the oligonucleotides of the present invention are preferably antisense molecules, which are chimeric molecules. "Chimeric antisense molecules” are oligonucleotides, which contain two or more chemically distinct regions, eacha made up of at least one nucleotide. These oligonucleotides typically comtain at least one region wherein the oligonucleotide is modified so as to confer upon the oligonucleotide increased resistance to nuclease degradation, increased cellular uptake, and/or increased binding affinity for the target polynucleotide. An additional region of the oligonucleotide may serve as a substrate for enzymes capable of cleaving
RNA:DNA or RNA:RNA hybrids. An example for such includes RNase H, which is a cellular endonuclease which cleaves the RNA strand of an
RNA:DNA duplex. Activation of RNase H, therefore, results in cleavage of the
RNA target, thereby greatly enhancing the efficiency of oligonucleotide inhibition of gene expression. Consequently, comparable results can often be obtained with shorter oligonucleotides when chimeric oligonucleotides are used, compared to phosphorothioate d eoxyoligonucleotides hybridizing to the same target region. Cleavage of the RNA target can be routinely detected by gel electrophoresis and, if necessary, associated nucleic acid hybridization techniques known in the art.
Chimeric antisense molecules of the present invention may be formed as i composite structures of two or more oligonucleotides, modified oligonucleotides, as described above. Representative U.S. patents that teach the preparation of such hybrid structures include, but are not limited to, U.S. Pat.
Nos. 5,013,830; 5,149,797; 5,220,007; 5,256,775; 5,366,878; 5,403,711; 5,491,133; 5,565,350; 5,623,065; 5,652,355; 5,652,356; and 5,700,922, each of which is herein fully incorporated by reference.
The oligonucleoti des of the present invention can further comprise a ribozyme sequence. Rybozymes are being increasingly used for the sequence-specific inhibition of gene expression by the cleavage of mRNAs.
Several rybozyme sequences can be fused to the oligonucleotides of the present invention. These sequences include but are not limited ANGIOZYME specifically inhibiting formation of the VEGF-R (Vascular Endothelial Growth
Factor receptor), a key component in the angiogenesis pathway, and
HEPTAZYME, a rybozyme designed to selectively destroy Hepatitis C Virus (HCV) RNA, (Rybozyme Pharmaceuticals, Incorporated - WEB home page).
Further alternatiwely, a small interfering polynucleotide molecule, according to the present invention can be a DNAzyme.
DNAzymes are single-stranded catalytic nucleic acid molecules. A general model (the "10-23" model) for the DNAzyme has been proposed. "10-23" DNAzymes have a catalytic domain of 15 deoxyribonucleotides, flanked by two substrate-recognition domains of seven to nine deoxyribonucleotides each. This type of DNAzyme can effectively cleave its substrate RNA at purime:pyrimidine junctions (Santoro, S.W. & Joyce, G.F. : Proc. Natl, Acad. Sci. USA 199; for rev of DNAzymes see Khachigian, LM
Curr Opin Mol Ther 20002;4:119-21).
Examples of comstruction and amplification of synthetic, engineered
DNAzymes recognizing single and double-stranded target cleavage sites have been disclosed in U.S. Pat. No. 6,326,174 to Joyce et al. DNAzymes of similar design directed against the human Urokinase receptor were recently observed to inhibit Urokinase receptor expression, and successfully inhibit colon cancer cell i metastasis in vivo (Itoh et al , 20002, Abstract 409, Ann Meeting Am Soc Gen
Ther www.asgtorg). In another application, DNAzymes complementary to ber-abl oncogenes were successful in inhibiting the oncogenes expression in leukemia cells, and lessening relapse rates in autologous bone marrow transplant in cases of CML and ALL.
Alternatively, as described hereinabove, retinoid receptor superfamily inhibitors (e.g., antagonists, siRNA molecules, antisense molecules, antibodies, etc.) which downregulate or suppress retinoid receptor activity and/or expression can be used to down regulate CD33 expression.
Briefly, as is described hereinabove, retinoid receptors such as RAR,
RXR and VDR have been reported to be involved in the regulation of gene expression pathways associated with cell proliferation and differentiation and in particular in the regulation of CD38 expression (24, 25). Hence, preferred agents that downregulate CD38 expression according to the present invention include RAR antagonists, RXR antagonists and VDR antagonists or, alternatively, antagonists for reducing the capacity of the stem cells in responding to retinoic acid, retinoid and/or Vitamin D.
As used herein the term "antagonist" refers to an agent that counteracts or abrogates the effects of an agonist or a natural ligand of a receptor. Further features relating to such antagonists are detailed hereinunder.
Each of the agents described hereinabove may reduce the expression or activity of CD38 individually. However, the present invention aims to also encompas the use of any subcombination of these agents. . It will be appreciated that protein agents (e.g., antibodies) of the present invention can be expressed from a polynucleotide encoding same and provided to ex-vivo cultured stem cells employing an appropriate gene delivery vehicle/method and a nucleic acid comstruct as is further described hereinunder.
Examples of suitable constructs include, but are not limited to pcDNA3, ) pcIDNA3.1 (+), pGL3, PzeoSV2 (+/-), pDisplay, pEF/myc/cyto, pCMV/myc/cyto each of which is commercially available from Imvitrogen Co. (wwvw.invitrogen.com). Examples of retroviral vector and packaging systems are those sold by Clontech, San Diego, Calif., including Re®ro-X vectors pLINCX and pLXSN, which permit cloning into multiple cloning sites and the transgene is transcribed from CMV promoter. Vectors derived from
Mo-MuLV are also included such as pBabe, where the transgene will be transcribed from the S’LTR promoter.
As the method of ex-vivo expanding a population of stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo, according to this aspect of the present invention, is effected by modulating
CID»38 expression and/or activity, either at the protein level, using RAR, RXR or
VIDR antagonists or a CD38 inhibitor such as nicotinamide and a-nalogs thereof, or ait the at the expression level via genetic engineering techniques, as is detailed hereinabove, there are further provided, according to the present invention, several preferred methods of ex-vivo expanding a population of stem cells, while at the same time, substantially inhibiting differentiation off the stem cells ex-Vivo.
In one particular, a method of ex-vivo expanding a population of stem cel Is, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo is effected by providing the stem cells with eex-vivo culture corrditions for ex-vivo cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to retinoic acid, retinoids and/or
Vitamin D, thereby expanding the population of stem cells while at the same . time, substantially inhibiting differentiation of the stem cells ex-v=ivo.
Reducing the capacity of the cells in responding to retinoic acid, retinoids and/or Vitamin D, or to retinoic acid, retinoid X and/or Vitammin D receptor signaling may be effected, for example, by the administration of chemical inhibitors, including receptor antagonists. ’ In another particular, the method of ex-vivo expanding a pogpulation of stem cells, while at the same time, substantially inhibiting differentiation of the : stem cells ex-vivo is effected by providing the stem cells with ex-v=ivo culture conditions for ex-vivo cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to signaling pathways involving the retinoic acid receptor, retinoid-X receptor and/or Vitamin D receptor, thereby expanding the population of stem cells while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo.
Reducing the capacity of the cells to respond to retinoic acid, retinoid X and/or Vitamin D receptor signaling events, includes treating the cells with antagonists supplied continuously or for a short-pulse period, and is effected by a diminution or abrogation of cellular signaling pathways through their respective, cognate receptors.
Final concentrations of the antagonists may be, depending on -the specific application, in the micromolar or millimolar ranges. For example, within about 0.1 uM to about 100 mM, preferably within about 4 uM to about SO mM, more preferably within about 5 pM to about 40 mM.
In still another particular, the method of ex-vivo expanding a population of stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo is effected by providing the stem cells with ex-vivo culture conditions for ex-vivo cell proliferation and with nicotanamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog deri-vative or a nicotinamide or a nicotinamide analog metabolite, thereby expanding the ) population of stem cells while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo.
Final comcentrations of the nicotinamide or the analogs, derivatives or metabolites thereof are preferably, depending on the specific application, in the millimolar ranges. For example, within about 0.1 mM to abowt 20 mM,
. preferably within about I mM to about 10 mM, more preferably within about 5 mM to about 10 mM.
The ex-vivo expansion of populatioms of stem cells, according to the features described hereinabove, can be utilized for expanding a population of hematopoietic renewable stem cells ex-vivo.
Hence, according to another aspect of the present invention, there is provided a method of ex-vivo expandimg a population of hematopoietic renewable stem cells ex-vivo. The method is effected by obtaining adult or neonatal umbilical cord whole white blood cells (also known in the art as mononuclear cell fraction) or whole bone marrow cells sample and providing the cells in the sample with ex-vivo culture conditions for stem cells ex-vivo cell proliferation and, at the same time, for reducing the expression and/or activity of
CD38, as is described hereinabove, thereby expanding a population of a renewable stem cells in the sample.
In one particular embodiment of this aspect of the present invention, this method is effected by obtaining adult or neonatal umbilical cord whole white blood cells or whole bone marrow cells sample and providing the cells in the sample with ex-vivo culture conditions for stem cells ex-vivo cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to retinoic acid, retinoids and/or Vitamin D, thereby expanding a population of a renewable stem cells in the sample.
In another particular embodiment of this aspect of the present invention, the method is effected by obtaining adult or neonatal umbilical cord whole white blood cells or whole bone marrow cells sample and providing the cells in the sample with ex-vivo culture conditions for stem cells ex-vivo cell ) proliferation and, at the same time, for reducing a capacity of the stem cells in i responding to signaling pathways involving the retinoic acid receptor, the retinoid X receptor and/or the Vitamin D receptor, thereby expanding a population of a renewable stem cells in the sample.
In still another particular embodiment of this aspect of the present invention, the method is effected by obtaining adult or neonatal umbilical cord whole white blood cells or whole bone marrow cells sample and providing the cells in the sample with ex-vivo culture conditions for stem cells ex-vivo cell 5s proliferation and with nicotinamide, a nicotinamicle analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite, thereby expanding a population of a renewable stem cells in the sample.
Expanding the population of stem cells can be further utilized, according to the present invention, in in vivo settings, such that according to still another aspect of the present invention there is provided a method of in-vivo expanding a population of stem cells, while at the same time, substantially inhibiting differentiation of the stem cells in-vivo. The method, according to this aspect of the present invention is effected by administering to a subject in need thereof a therapeutically effective amount of an agent, the agent serves for reducing an expression and/or activity of CD38, according to the features described hereinabove.
In one particular embodiment of this aspe-ct of the present invention, the method is effected by administering to a subject in need thereof a therapeutically effective amount of an agent, which serves for reducing a capacity of the stem cells in responding to wetinoic acid, retinoids and/or
Vitamin D, as is defined hereinabove.
In another particular embodiment of this aspect of the present invention, the method is effected by administering to a subject in need thereof a 2s therapeutically effective amount of an agent, which serves for reducing a capacity of the stem cells in responding to signaling pathways involving the : retinoic acid receptor, retinoid-X receptor and/or Vitamin D receptor, as is defined hereinabove.
In still another particular embodiment of this aspect of the present invention, the method is effected by administering to a subject in need thereof a therapeutically effective amount of an agent selected from the group consisting of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide a nalog derivative an d a nicotinamide or a nicotinamide analog metabolite.
As used herein throughout, the phrase “therapeutically effective amount” or “effective amount” refers to that amount of the agent being administered which will &induce expansion of stem cells yet will limit the differentiation thereof.
The methods described hereinabove for ex-vivo expanding stem cells populations can result, infer alia, in an expanded population of stem cells.
Thus, further according to an aspect of the present invention thaere is provided an ex-vivo expanded population of hematopoietic stem cells which comprises a plurality of cells characterized by 3-20 % of the cells being reselectable CD34" cells, of which at least 40 % of cells are CD34", i.e. fall below the mnedian intensity in a FACS analysis, wherein, in the reselectable 1s CD34" cells, a majority of cells which are Lin" are also CD34" 4. cells. In one embodiment, the hematopoietic stem cells are derived from a source selected from the group consisting of bone marrow, peripheral blood and neonatal umbilical cord blood. In another embodiment, the population of cells has a single genetic background. In yet another embodiment, the ex-vivo expanded population of hematopoietic stem cells comprises at least N cells derived from a single donor, wherein N equals the average number of CD34" cells derived from one sample of neonatal umbilical cord blood, bone marrow, or peripheral blood multiplied by 1,000. Cell surface expression of the CD34 and/or Lin markers can be determined, for example, via FACS analysis or immunohistalogical staining techniques. A self renewal potential of the stem cells an be determined in-vitro by long term colony formation (LTC-CFUc), as is further . exemplified in the Examples section that follows, or by in-vivo engraftment in the SCID-Hu mouse model. The SCID-Hu mouse model employs C.B-17 scid/scid (S-CID) mice transplanted with human fetal thymus and liver tassue or fetal BM tissue and provides an appropriate model for the evaluation of putative human hematopoietic stem cells. Because of the reconstitution of the SCID mice with human fetal tissue, the model affords the proliferation of stem cells, in this case human hematopoietic stem cells to proliferate, and function in the . hematopoietic microenvironment of human origin. Mice are typically irradiated, then delivered stem cells into the grafts, and reconstitution is measured by any number of methods, including FACS and immunohistochemistry of repopulated organs (Humeau L., et al Blood (1997) 90:3496).
Additionally, the methods described hereinabove can be utilized to produce transplantable hematopoietic cell preparations, such that according to yet another aspect of the present invention there is provided a transplantable hematopoietic cell preparation, which comprises an expanded population of hematopoietic stem cells propagated ex-vivo in the presence of an effective amount of an agent, which reduces the expression and/or activity of CD38, as described hereinabove, while at the same time, substantially inhibiting differentiation of the stem cells; and a pharmaceutically acceptable carrer.
Hence, cell populations of the invention can be administered in a pharmaceutically acceptable carrier or diluent, such as sterile saline and aqueous buffer solutions. The use of such carriers and diluents is well known in the art.
In a particular embodiment of this aspect of the present invention, the transplantable hematopoietic cell preparation comprises an expanded population of hematopoietic stem cells propagated ex-vivo in the presence of an effective amount of an agent, which reduces a capacity of the stem cells in responding to retinoic acid, retinoids and/or Vitamin D, while at the same time, substantially inhibiting differentiation of the stem cells; and a pharmaceutically acceptable carrier. : In another particular embodiment of this aspect of the present invention, the transplantable hematopoietic cell preparation comprises an expanded population of hematopoietic stem cells propagated ex-vivo in the presence of an effective amount of an agent, which reduces a capacity of the stem cells im responding to retirmoic acid receptor, retinoid X receptor and/or Vitamin D receptor signaling, while at the same time, substantially inhibiting differentiation of the stem cells; and a pharmaceutically acceptable carrier. i} In still another particular embodiment of this aspect of the present s invention, the transplantable hematopoietic cell preparation comprises an expanded population of hematopoietic stem cells propagated ex-vivo in the presence of an effective amount of an agent selected from the group consistimg of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative and a nicotinamide or a nicotinamide analog metabolite; and a pharmaceutically acceptable carrier.
The ability of the agents of the present invention to inhibit differentiation of stem cells can be further used in various technical applications:
According to a further aspect of the present invention there is provided a method of preserving stem cells. In one embodiment, the method is effected by handling the stem cell in at least one of the following steps: harvest, isolati on and/or storage, in a presence of an effective amount of a retinoic acid receptor antagonist, a retimoid X receptor antagonist and/or a Vitamin D receptor antagonist. Alternatively, the method is effected by handling the stem cell im at least one of the foklowing steps: harvest, isolation and/or storage, in a preserice of an effective am-ount of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide anallog metabolite.
According to still a further aspect of the present invention there is provided a cells collection/culturing bag. The cells collection/culturing bag of ] the present invention is supplemented with an effective amount of a retin oic : acid receptor antagonist, a retinoid X receptor antagonist and/or a Vitamim D receptor antagomist, which substantially inhibits cell differentiati on.
Alternatively, the cells collection/culturing bag of the present invention is supplemented with an effective amount of nicotinamide, a nicotinamide anal og,
a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite. ) According to the present invention there is also provided a cells . separation and/or washing buffer. The separation and/or washing buffer is 5s supplemented with an effective amount of a retinoic acid receptor antagonist, a retinoid X receptor antagonist and/or Vitamin D receptor antagonists, which substantially inhibit cell differentiation and induce cell expansion.
Alternatively, the separation and/or washing buffer is supplemented with an effective amount of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite.
As is further detailed below, stem cells may serve to exert cellular gene therapy.
Gene therapy as used herein refers to the transfer of genetic material (e.g., DNA or RNA) of interest into a host to treat or prevent a genetic or acquired disease or condition or phenotype. The genetic material of interest encodes a product (e.g., a protein, polypeptide, peptide, functional RNA, antisense) whose production in vivo is desired. For example, the genetic material of interest can encode a hormaone, receptor, enzyme, polypeptide or peptide of therapeutic value. For review see, in general, the text "Gene
Therapy" (Advanced in Pharmacology 40, Academic Press, 1997).
Two basic approaches to gene therapy have evolved: (i) ex-vivo or cellular gene therapy; and (ii) in vivo gene therapy. In ex-vivo gene therapy cells are removed from a patient, and while being cultured are treated in-vitro.
Generally, a functional replacement gene is introduced into the cells via an appropriate gene delivery vehicle/method (transfection, transduction, : homologous recombination, etc.) and an expression system as needed and then the modified cells are expanded in culture and returned to the host/patient.
These genetically re-implanted cells have been shown to express the transfected genetic material in situ.
Hence, further according to an aspect of the present invention, there is provided a method of genetically modifying stem cells with an exogene. “The method, according to this aspect of the present invention, is effected by (a) obtaining stem cel Is to be genetically modified; (b) providing the stem cells with ex-vivo culture conditions for ‘cell proliferation and, at the same time, for reducing an expression and/or activity of CD38, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo; and (c) genetically modifying the stem cells witha the exogene. It is clear that the order of step (b) and (c) can be reversed.
In a particular embodiment of this aspect of the present invention, the - method is effected by (a) obtaining stem cells to be genetically modifieds (b) providing the stemn cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to retinoic acid, retinoids and/or Vitamin D, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo; and (c) genetically modifying the stem cells with the exogene.
In another particular embodiment of this aspect of the present invemtion, the method is effected by (a) obtaining stem cells to be genetically modified; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to signaling pathways involving the retinoic acid receptor and/or the retinoid X receptor and/or the Vitamin D receptor, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo; and (c) genetically modifying the stem cells with the exogene. In still another particular embodiment of this aspect of the present : invention, the method is effected by (a) obtaining stem cells to be genetically modified; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and with nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide amalog metabolite, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo; and (c) ) genetically modifying the stem cells with the exogene.
In a preferred embodiment, genetically modifying the cells is effected by 5s a vector, which comprises the exogene or transgene, which vector is, for example, a viral vector or a nucleic acid vector. Many viral vectors suitable for use in cellular gene therapy are known, examples are provided hereinbelow.
Similarly, a range of nucleic acid vectors can be used to genetically transform the expanded cells of the invention, as is further described below.
Accordingly, the expanded cell s of the present invention can be modified to express a gene product. As used herein, the phrase "gene product” refers to proteins, peptides and functional RNA molecules. Generally, the gene product encoded by the nucleic acid molecule is the desired gene product to be supplied to a subject. Examples of such gene products include proteins, peptides, glycoproteins and lipoproteins normally produced by an organ of the recipient subject. For example, gene products which may be supplied by way of gene replacement to defective organs in the pancreas include insulin, amylase, protease, lipase, trypsinogen, chymotrypsinogen, carboxypeptidase, ribonuclease, deoxyribonuclease, triaclyglycerol lipase, phospholipase A2, elastase, and amylase; gene products normally produced by the liver include blood clotting factors such as blood clotting Factor VIII and Factor IX, UDP glucuronyl transferae, ornithine transcarbanoylase, and cytochrome p450 enzymes, and adenosine deaminase, for the processing of serum adenosine or the endocytosis of low density lipoproteins; gene products produced by the thymus include serum thymic factor, thymic humoral factor, thymopoietin, and thymosin a]; gene products produced by the digestive tract cells include gastrin, secretin, cholecystokinin, somatostatin, serotinin, and substance P.
Alternatively, the encoded gene product is one, which induces the expression of the desired gene product by the cell (e.g., the introduced genetic material encodes a transcription factor, which induces the transcription of the ~ gene productto be supplied to the subject). ) In still another embodiment, the recombinant gene can provide a heterologous protein, e.g., not native to the cell in which it is expressed. For s instance, vaxious human MHC components can be provided to non-human cells to support engraftment in a human recipient. Alternatively, the transgene 1s one, which inhibits the expression or action of a donor MHC gene product normally expressed in the micro-organ explant.
A nucleic acid molecule introduced into a cell is in a form suitable for expression in the cell of the gene product encoded by the nucleic acid.
Accordingly, the nucleic acid molecule includes coding and regulatory sequences required for transcription of a gene (or portion thereof) and, when the gene product is a protein or peptide, translation of the gene acid molecule include promnoters, enhancers and polyadenylation signals, as well as sequences necessary for transport of an encoded protein or peptide, for example N-terminal signal sequences for transport of proteins or peptides to the surface of the cell or secretion.
Nucleotide sequences which regulate expression of a gene product (e.g., promoter amd enhancer sequences) are selected based upon the type of cell in which the gene product is to be expressed and the desired level of expression of the gene product. For example, a promoter known to confer cell-type specific expression of a gene linked to the promoter can be used. A promoter specific for myoblast gene expression can be linked to a gene of interest to confer muscle-specific expression of that gene product. Muscle-specific regulatory elements, which are known in the art, include upstream regions from the dystrophin gene (Klamut et al., (1989) Mol. Cell Biol.9: 2396), the creatine ) kinase gene (Buskin and Hauschka, (1989) Mol. Cell Biol. 9: 2627) and the troponin gene (Mar and Ordahl, (1988) Proc. Natl. Acad. Sci. USA. 85: 6404).
Regulatory elements specific for other cell types are known in the art (e.g., the albumin emhancer for liver-specific expression; insulin regulatory elements for pancreatic islet cell-specific expression; various neural cell-specific regulatory elements, including neural dystrophin, neural enolase and A4 amyloid promoters).
Alternatively, a regulatory element, which can direct constitutive expression of a gene in a variety of different cell types, such as a viral regulatory element, can be used. Examples of viral promoters commonly used to drive gene expression include those derived from polyoma virus, Adenovirus 2, cytomegalovirus and Simian Virus 40, and retroviral LTRs.
Alternatively, a regulatory element, which provides inducible expression of a gene linked thereto, can be used. The use of an inducible regulatory element (e.g., an inducible promoter) allows for modulation of the production of the gene product in the cell. Examples of potentially useful inducible regulatory systems for use in eukaryotic cells include hormone-regulated elements (e.g., see Mader, S. and White, J.H. (1993) Proc. Natl. Acad. Sci. USA 90: 5603-5607), synthetic ligand-regulated elements (see, e.g., Spencer, D.M. et al 1993) Science 262: 1019-1024) and ionizing radiation-regulated elements (e.g., see Manome, Y. Et al. (1993) Biochemistry 32: 10607-10613; Datta, R. et al. (1992) Proc. Natl. Acad. Sci. USA 89: 1014-10153). Additional tissue-specific or inducible regulatory systems, which may be. developed, can also be used in accordance with the invention.
There are a number of techniques known in the art for introducing genetic material into a cell that cana be applied to modify a cell of the invention.
In one embodiment, the nucleic acid is in the form of a naked nucleic acid molecule. In this situation, the nucleic acid molecule introduced into a cell to be modified consists only of the nucleic acid encoding the gene product and the necessary regulatory elements.
Alternatively, the nucleic acid encoding the gene product (including the necessary regulatory elements) is contained within a plasmid vector. Examples of plasmid expression vectors include CDM8 (Seed, B. (1987) Nature 329: 840) and pMT2PC (Kaufman, et al. (19 87) EMBO J. 6: 187-195).
WO (13/062369 PCT/IL03/00064
In another embodiment, the nucleic acid molecule to be introduced into a cell is contained within a viral vector. In this situation, the nucleic acid encoding the gene product is inserted into the viral genome: (or partial viral genome). The regulatory elements directing the expression of the gene product can be included with the nucleic acid inserted into the viral gemome (i.e., linked to thme gene inserted into the viral genome) or can be provided by the viral genome itself.
Naked nucleic acids can be introduced info cells using calcium-phosphate mediated transfection, DEAE-dextran mediated transfection, electroporation, liposome-mediated transfection, direct injection, and receptor-mediated uptake.
Naked nucleic acid, e.g., DNA, can be introduced into ells by forming a precipitate containing the nucleic acid and calcium phosphate. For example, a
HEPES-buffered saline solution can be mixed with a so-lution containing calcium chloride and nucleic acid to form a precipitate and the precipitate is them incubated with cells. A glycerol or dimethyl sulfoxide shock step can be added to increase the amount of nucleic acid taken up by certain cells.
CaP*04-mediated transfection can be used to stably (or tramsiently) transfect cells and is only applicable to in vitro modification of cells. Protocols for
CaP*Q4-mediated transfection can be found in Current Protocols in Molecular
Biology, Ausubel, F.M. et al. (eds.) Greene Publishing Aussociates, (1989),
Section 9.1 and in Molecular Cloning: A Laboratory Manual, 2nd Edition,
Sambrook et al. Cold Spring Harbor Laboratory Press, (1989), Sections 16.32-16.40 or other standard laboratory manuals.
Naked nucleic acid can be introduced into cells by forming a mixture of the nucleic acid and DEAE-dextran and incubating the mixtume with the cells. A dimethylsulfoxide or chloroquine shock step can be added to increase the amount of nucleic acid uptake. DEAE-dextran transfection iss only applicable to in witro modification of cells and can be used to introduce DINA transiently into cells but is not preferred for creating stably transfected cells. Thus, this method can be used for short-term production of a gene product but is not a metkiod of choice for long—term production of a gene product. Protocols for
DEAE-dextran-mediated transfection can be found in Current Protoc ols in
Molecular Biology, Ausubel, F.M. et al. (eds.) Greene Publishing AssOciates 5s (1989), Section 9.2 and in Molecular Cloning: A Laboratory Manual, 2nd
Edition, Sambrook _ et al. Cold Spring Harbor Laboratory Press, (1989), Sections 16.41-16.46 or other standard laboratory manuals.
Naked nucl eic acid can also be introduced into cells by incubating the cells and the nucleic acid together in an appropriate buffer and subjecting the cells to a high-voltage electric pulse. The efficiency with which nucleic acid is introduced into cells by electroporation is influenced by the strength of the applied field, the 1 ength of the electric pulse, the temperature, the conforomation and concentratiorm of the DNA and the ionic composition of the media.
Electroporation can be used to stably (or transiently) transfect a wide variety of cell types and is only applicable to in vitro modification of cells. Protocols for electroporating ce lls can be found in Current Protocols in Molecular B-iology,
Ausubel FM. et al. (eds.) Greene Publishing Associates, (1989), Sectmon 9.3 and in Molecular Cloning: A Laboratory Manual, 2nd Edition, Sambroo-k et al.
Cold Spring Harbor Laboratory Press, (1989), Sections 16.54-16.55 o»1 other standard laboratory manuals.
Another method by which naked nucleic acid can be introduced ineto cells includes liposome-mediated transfection (lipofection). The nucleic acid is mixed with a liposome suspension containing cationic lipids. The DNA/ligposome complex is then incubated with cells. Liposome mediated transfection can be used to stably (or transiently) transfect cells in culture in vitro. Protocols can be found in Current Protocols in Molecular Biology, Ausubel F.M. et all. (eds.) . Greene Publishing Associates, (1989), Section 9.4 and other standard laboratory manuals. Additionally, gene delivery in vivo has been accomplished using liposomes. See for example Nicolau et al. (1987) Meth. Enz. 149:1 57-176;
Wang and Huang (1987) Proc. Natl. Acad. Sci. USA 84:7851-7855; Bri_gham et al. (1989) Am. J Med. Sci. 298:278; and Gould-Fogerite et al. (1989) Gene 84:429-438. ) Naked nucleic acid can also be introduced into cells by directly injecting i the nucleic acid into the cells. For an in vitro culture of cells, DNA can be introduced by microinjection. Since each cell is microinjected individually, this approach is very labor intensive when modifying large numbers of cells.
However, a situation wherein microinjection is a method of choice is in the production of transgenic animals (discussed in greater detail below). In this situation, the DNA is stably introduced into a fertilized oocyte, which is then allowed to develop into an animal. The resultant animal contains cells carrying the DNA introduced into the oocyte. Direct injection has also been used to introduce naked DNA into cells in vivo (see e.g., Acsadi et al. (1991) Nature 332:815-818; Wolff et al. (1990) Science 247:1465-1468). A delivery apparatus (e.g., a “gene gun”) for injecting DNA into cells in vivo can be used. Such an apparatus is commercially available (e.g., from BioRad).
Naked nucleic acid can be complexed to a cation, such as polylysine, which is coupled to a ligand for a cell-surface receptor to be taken up by receptor-mediated endocytosis (see for example Wu, G. and Wu, C.H. (1988) J.
Biol. Chem. 263: 14621; Wilson et al. (1992) J. Biol. Chem. 267: 963-967, and
U.S. Patent No. 5,166,320). Binding of the nucleic acid-ligand complex to the receptor facilitates uptake of the DNA by receptor-mediated endocytosis.
Receptors to which a DNA-ligand complex has targeted include the transferrin receptor and the asialoglycoprotein receptor. A DNA-ligand complex linked to adenovirus capsids which naturally disrupt endosomes, thereby releasing material into the cytoplasm can be used to avoid degradation of the complex by intracellular lysosomes (see for example Curiel et al. (1991) Proc. Natl. Acad. : Sci. USA 88: 8850; Cristiano et al. (1993) Proc. Natl. Acad. Sci. USA 90: 2122-2126). Receptor-mediated DNA uptake can be used to introduce DNA into cells either in vitro or in vivo and, additionally, has the added feature that
DNA can be selectively targeted to a particular cell type by use oof a ligand which binds to a receptor selectively expressed on a target cell of interest.
Generally, when naked DNA is introduced into cells in cultuxe (e.g., by . one of the transfection techniques described above) only a small fraction of cells (about 1 out of 10° ) typically integrate the transfected DNA into thelr genomes (i.e., the DNA is maintained in the cell episomally). Thus, in order to identify cells, which Thave taken up exogenous DNA, it is advantageous to transfect nucleic acid encoding a selectable marker into the cell along with the nucleic acid(s) of interest. Preferred selectable markers include those, which confer resistance to drugs such as G418, hygromycin and methotrexate. Selectable markers may be introduced on the same plasmid as the gene(s) of interest or may be introduced on a separate plasmid.
A preferred approach for introducing nucleic acid encoding a gene product into a cell is by use of a viral vector containing nucleic acid, e.g., a cDNA, encoding the gene product. Infection of cells with a viral vector has the advantage that a large proportion of cells receive the nucleic acid which can obviate the need for selection of cells which have received the nucleic acid.
Additionally, molecules encoded within the viral vector, e.g., a cDN.A contained in the viral vector, are expressed efficiently in cells which have taken up viral vector nucleic acid and viral vector systems can be used either irz vitro or in vivo.
Defective retroviruses are well characterized for use in gene transfer for gene therapy purposes (for review see Miller, A.D. (1990) Blood 76: 271). A recombinant retrovirus can be constructed having a nucleic acid encoding a gene product of interest inserted into the retroviral genome. Additionally, portions of the retroviral genome can be removed to render time retrovirus . replication defective. The replication defective retrovirus is then packaged into virions, which can be used to infect a target cell through the use of a helper virus by starndard techniques. Protocols for producing recombinant retroviruses and for infecting cells in vitro or in vivo with such viruses can be found in
Current Protocols in Molecular Biology, Ausubel, F.M. et al. (eds.) Greene
Publishing Associates, (1989), Sections 9.1€0-9.14 and other standard laboratory manuals. Examples of suitable retroviruses include pLJ, pZIP, pWE and pEM, which are well known to those skilled in the art. Examples of suitable packaging virus lines include Crip, yCrip, w2 and y Am. Retroviruses have been used to introduce a variety of genes into many different cell types, including epithelial cells endothelial cells, lymphocytes, myoblasts, hepatocytes, bone marrow cells, in vitro and/or in vivo (see for example Eglitis, et al. (1985) Science 230: 1395-1398; Danosand Mulligan (1988) Proc. Natl. Acad. Sci. USA 85: 6460-6464; Wilson et al. (1988) Proc. Natl. Acad. Sci USA 85:3014-3018;
Armentano et al., (1990) Proc. Natl. Acad- Sci. USA 87: 6141-6145; Huber ect al. (1991) Proc. Natl. Acad. Sci. USA 88: 8039-8043; Feri et al. (1991) Proc.
Natl. Acad. Sci. USA 88:8377-8381; Chowdhury et al. (1991) Science 254: 1802-1805; van Beusechem et al. (1992) Proc. Natl. Acad. Sci USA 89:7640-7644; Kay et al. (1992) Human Gene Therapy 3:641-647; Dai et al. (1992) Proc. Natl. Acad. Sci. USA 89:10892-10895; Hwu et al (1993) J.
Immunol. 150:4104-4115; US Patent No. 4,868,116; US Patent No. 4,980,286;
PCT Application WO 89/07136, PCT Application WO 89/02468; PCT
Application WO 89/05345; and PCT Application WO 92/07573). Retroviral vectors require target cell division in order for the retroviral genome (and foreign nucleic acid inserted into it) to be integrated into the host genome to stably introduce nucleic acid into the cell. Thus, it may be necessary to stimulate replication of the target cell.
The genome of an adenovirus can be manipulated such that it encodes and expresses a gene product of interest but is inactivated in terms of its ability to replicate in a normal lytic viral life cycle. See for example Berkner et al. (1988) BioTechniques 6:616; Rosenfeld et al. (1991) Science 252:431-434; and
Rosenfeld et al. (1992) Cell 68:143-155. Suitable adenoviral vectors derived from the adenovirus strain Ad type 5 d1324 or other strains of adenovirus (e.g.,
Ad2, Ad3, Ad7 etc.) are well known to those skilled in the art. Recombinant adenoviruses are advantageous in that they do not require dividing cells to be effective gene delivery vehicles and can be used toe infect a wide variety of cell types, including airway epithelium (Rosenfeld et al. (1992) cited supra), . endothelial cells (Lemarchand et al. (1992) Proc. Natl. Acad. Sci. USA 89: 6482-6486), hepatocytes (Herz and Gerard (1993) Proc. Natl. Acad. Sci. USA 90: 2812-2816) and muscle cells (Quantin et al. ( 1992) Proc. Natl. Acad. Sci.
USA 89: 2581-2584). Additionally, introduced adenoviral DNA (and foreign
DNA contained therein) is not integrated into the genome of a host cell but remains episomal, thereby avoiding potential problems that can occur as a result of insertional mutagenesis in situations where introduced DNA becomes integrated into the host genome (e.g., retroviral D NA). Moreover, the carrying capacity of the adenoviral genome for foreign DN A is large (up to 8 kilobases) relative to other gene delivery vectors (Berkner et al. cited supra, Haj-Ahmand and Graham (1986) J. Virol 57: 267). Most replication-defective adenoviral vectors currently in use are deleted for all or parts of the viral E1 and E3 genes but retain as much as 80% of the adenoviral genetic material.
Adeno-associated virus (AAV) is a naturally occurring defective virus that requires another virus, such as an adenovirus or a herpes virus, as a helper virus for efficient replication and a productive 1&fe cycle. (For a review see
Muzyczka et al. Curr. Topics In Micro. And Immunol. (1992) 158: 97-129). Tt is also one of the few viruses that may integrate its DNA into non-dividing cells, and exhibits a high frequency of stable integration. (see for example Flotte et al. (1992) Am. J. Respir. Cell. Mol. Biol. 7: 349-356; Samulski et al. (1989) J.
Virol. 63:3822-3828; and McLaughlin et al (1989) J. Virol. 62: 1963-1973).
Vectors containing as little as 300 base pairs of ALAV can be packaged and can integrate. Space for exogenous DNA is limited to about 4.5 kb. An AAV vector : such as that described in Tratschin et al. (1985) Mol. Cell. Biol. 5: 3251-3260 can be used to introduce DNA into cells. A variety of nucleic acids have been introduced into different cell types using AAV vectors (see for example
Hermonat ct al. (1984) Proc. Natl. Acad. Sci. USA 81: 6466-6470; Tratschin et al. (1985) Mol. Cell Biol. 4: 2072-2081; Wondisford et al. (1988) Mol.
Endocrinol. 2:32-39; Tratschin et al. (1984) J. Virol. 51: 611-619; and Flotte et al. (1993) J. Biol. Cherm. 268: 3781-3790).
The efficacy off a particular expression vector system and method of introducing nucleic acid into a cell can be assessed by standard approaches routinely used in the art. For example, DNA introduced into a cell can be detected by a filter hybridization technique (e.g., Southern blotting) and RNA produced by transcription of introduced DNA can be detected, for example, by
Northern blotting, RN ase protection or reverse transcriptase-polymerase <hain reaction (RT-PCR). The gene product can be detected by an appropriate assay, for example by immunological detection of a produced protein, such as with a specific antibody, or by a functional assay to detect a functional activity of the gene product, such as an enzymatic assay. If the gene product of interest to be interest to be expressed by a cell is not readily assayable, an expression system "15 can first be optimized using a reporter gene linked to the regulatory elements and vector to be used. “The reporter gene encodes a gene product, which is easily detectable and, thus, can be used to evaluate efficacy of the system. Standard reporter genes used in the art include genes encoding B-galactosidase, chloramphenicol acety transferase, luciferase and human growth hormone.
When the method used to introduce nucleic acid into a population of cells results in modification of a large proportion of the cells and efficient expression of the gene product by the cells (e.g., as is often the case when using a viral expression vector), the: modified population of cells may be used without further isolation or subcloning of individual cells within the population. That is, there may be sufficient prod uction of the gene product by the population of cells such that no further cell isolation is needed. Alternatively, it may be desirable to grow a homogenous population of identically modified cells from a single modified cell to isolate cells, which efficiently express the gene product. Such a population of uniform cells can be prepared by isolating a single modified cell by limiting dilution cloning followed by expanding the single cell in culture into a clonal population of cells by standard techniques. :
As is discussed in detail Thereinabove, ex-vivo expansion of stem cells can be advantageously utilized in hematopoietic cells transplantation or implantation. Hence, according to another aspect of the present invention there is provided a method of hematopoietic cells transplantation or implantation.
The method according to this aspect of the present invention is effected by (a) obtaining hematopoietic stem cells to be transplanted from a donor; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reclucing an expression and/or activity of CD38, thereby expanding the population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo; and (c) transplanting or implanting the stem cells to a recipient.
In a particular embodiment of this aspect of the present invention, the 1s method is effected by (a) obtaining hematopoietic stem cells to be transplanted from a donor; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to retinoic acid, retinoids and/or Vitamin D, thereby expanding the population of the stem cells , while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo; and (c) transplanting or implanting the stem cells to a recipient.
In another particular embodiment of this aspect of the present invention, the method is effected by (a) obtaining hematopoietic stem cells to be transplanted from a donor; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to signaling pathways involving the retinoic acid : receptor, the retinoid X receptor and/or the Vitamin D receptor, thereby expanding the population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo; and (c) transplanting or implanting the stem cells to a recipient.
In still another particular embodiment of this aspect of the present invention, the method is effected by (a) obtaining hematopoietic stem cells to be : transplanted from a donor; (b) providing the stem cells witha ex-vivo culture conditions for cell proliferation and with nicotinamide, a nicotinamide analog, a nicotimamide or a nicotinamide analog derivative or a nicotinamide or a nicotimamide analog metabolite, thereby expanding the population of the stem cells, while at the same time, substantially inhibiting differenti ation of the stem : . cells ex-vivo; and (c) transplanting or implanting the stem cells to a recipient.
The donor and the recipient can be a single individual or different individuals, for example, allogeneic individuals. When allogeneic transpl antation is practiced, regimes for reducing implant rejection and/or graft vs. host disease, as well know in the art, should be undertaken. Such regimes are currently practiced in human therapy. Most advanced regirmes are disclosed in publications by Slavin S. et al, e.g., J Clin Immunol (2002) 22: 64, and J
Hematother Stem Cell Res (2002) 11: 265), Gur H. et al. (Blood (2002) 99: 4174), and Martelli MF et al, (Semin Hematol (2002) 39: 48), which are incorporated herein by reference.
According to yet another aspect of the present invention there is provided a method of adoptive immunotherapy. The method according to this aspect of the present invention is effected by (a) obtaining hematopoietic stem cells from a recipient; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing an expression and/or activity of
CD38, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells; and (c) transplanting the stem cells to the recipient.
In a particular embodiment of this aspect of the present invention, the . method is effected by (a) obtaining hematopoietic stem cells from a recipient; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to retinoic acid, retinoids and/or Vitamin D, thereby expanding a population of the stem cells, while at the sarme time, substantially inhibiting differentiation of the stem cells; and (c) transplanting the stem cells to the recipient.
In another particular embodiment of this aspect of the present invention, the method is effected by (a) obtaining hematopoietic stem cells from a recipient; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and, at the same time, for reducing a capacity of the stem cells in responding to signaling pathways involving the retinoic acid receptor and/or the retinoid X receptor and/or the Vitamin D receptor, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells; and (c) transplanting the stem cells to the recipient.
In still another particular embodiment of this aspect of the present invention, the method is effected by (a) obtaining hematopoietic stem cells from a recipient; (b) providing the stem cells with ex-vivo culture conditions for cell proliferation and with nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells; and (c) transplanting the stem cell s to the recipient.
The effect of the agents that reduce CD38 expression or activity used in context of the present invention is not limited to ex-vivo settings. Hence, based o the findings herein described, novel in-vivo applications for these agents are envisaged.
Hence, according to yet another aspect of the present invention there is 2s provided a method of mobilization of bone marrow stem cells into the peripheral blood of a donor for harvesting the cells. The method according to . this aspect of the present invention is effected by (2) administering an effective amount of an agent to the donor for reducing the expression and/or activity of
CD38, thereby expanding a population of the stem cells, while at the same time,
substantially inhibiting differentiation of the stem cells; and (b) harvesting the cells by leukophoresis.
In a particular embodiment of this aspect of the present invention, the i method is effected by (a) administering an effective amount of an agent to the donor for reducing a capacity of the stem cells in responding to retinoic acid, retinoids and/or Vitamin D, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells; and (b) harvesting the cells by leukophoresis.
In another particular embodiment of this aspect of the present invention, the method is effected by (a) administering an effective amount of an agent to the donor for reducing a capacity of the stem cells in responding to signaling pathways involving the retinoic acid receptor and/or the retinoid X receptor and/or the Vitamin D receptor, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells; and (b) harvesting the cells by leukophoresis .
In still another particular embodiment of this aspect of the present invention, the method is effected by (a) administering to the donor an effective amount of an agent selected from the group consisting of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative and a nicotinamide or a nicotinamide analog metabolite, thereby expanding a population of the stem cells, while at the same time, substantially inhibiting differentiation of the stem cells; and (b) harvesting the cells by leukophoresis.
Preferably, the methods of mobilization of stem cells further comprise administering to the donor at least one cytokine, preferably at least one early cytokine, which are presently used to indu ce cell mobilization into penpheral blood. . Further according to an aspect of the present invention there is provided a method of decelerating maturation/differertiation of erythroid precursor cells for the treatment of B-hemoglobinopathic patients. The method according to this aspect of the present invention is effected by administering to the patient an agent for reducing the expression and/or activity of CD33, thereby expanding a population of erythroid precursor cells, while at the same time, substantially inhibiting differentiation of the erythroid precursor cells, such that upon natural : removal of the agent from the body, the cells undergo accelerated maturation, resulting in elevated production of fetal hemoglobin.
The agent used according to this method of the peresent invention can be an agent for abrogating or reducing a capacity of the cells in responding to retinoic acid, retinoids and/or Vitamin D, an agent for a-brogating or reducing a capacity of the cells in responding to retinoic acid, retinoid X and/or Vitamin D receptor signaling or an agent such as nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative and a nicotinamide or a nicotinamide analog metabolite.
In in-vivo settings, administration of the agents the reduce CD38 expression or activity, e.g., retinoic acid, retinoid and/or Vitamin D receptor antagonists, or nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative and/or a nicotinamide oer a nicotinamide analog metabolite, may be by a pharmaceutical composition inc-luding same, which may further include thickeners, carriers, buffers, diluents, surface active agents, preservatives, and the like, all as well known in the art.
The pharmaceutical composition may be admin-istered in various ways, depending on the preference for local or systemic treatament, and on the area to be treated. Administration may be done topically (@ncluding opthalmically, vaginally, rectally, intranasally), orally, by inhalation, or parenterally, for example by intravenous drip or intraperitoneal, Subcutaneous, subdural, intramuscular or intravenous injection, or via an implantable delivery device.
Formulations for topical administration may inc lude, but are not limited . to, lotions, ointments, gels, creams, suppositories, dr-ops, liquids, sprays and powders. Conventional pharmaceutical carriers, aqueous, powder or oily bases, thickeners and the like may be necessary or desirable.
Compositions for oral administration include powders or granules, suspensions or solutions in water or non-aqueous media, sachets, capsules or tablets. Thickeners, diluents, flavorings, dispersing aids, emulsifiers or binders may be desirable.
Formulations for parenteral administration may include, but axe not limited to, sterile solutions, which may also contain buffers, diluents and other suitable additives.
Formulations for implantable delivery devices may similarly include, but are not limited to, sterile solutions, which may also contain buffers, diluents and other suitable additives.
Dosing is dependent on responsiveness of the condition for treatme nt, but will normally be one or more doses per day, with course of treatment lasting from several days to several months or until a required effect is achieved.
Persons ordinarily skilled in the art can easily determine optimum dosages, dosing methodologies and repetition rates. Slow release administration regimes may be advantageous in some applications.
According to preferred embodiments of the present invention, providing the stem cells with the conditions for ex-vivo cell proliferation comprises providing the cells with nutrients and with cytokines. Preferably, the cytokines are early acting cytokines, such as, but not limited to, stem cell factor, FLT3 ligand, interleukin-1, interleukin-2, interleukin-3, interleukin-6, interleukin-10, interleukin-12, tumor necrosis factor-a and thrombopoietin. It will be appreciated in this respect that novel cytokines are continuously discovered, some of which may find uses in the methods of cell expansion of the present invention.
Late acting cytokines can also be used. These include, for example, . granulocyte colony stimulating factor, granulocyte/macrophage colony stimulating factor, erythropoietin, FGF, EGF, NGF, VEGF, LIF, Hepatocyte growth factor and macrophage colony stimulating factor.
The stem cells to be expanded by thie method of the present invention can be embryonic stem cells or adult stem cells. Embryonic stem cells and methods of their retrieval are well known in the art and are described, for example, in } Trounson AO (Reprod Fertil Dev (2001) 13: 523), Roach ML (Methods Mol
Biol (2002) 185: 1), and Smith AG (Annu Rev Cell Dev Biol (2001) 17:435).
Adult stem cells are stem cells, which are derived from tissues of adults and are also well known in the art. Methods of isolating or enriching for adult stem cells are described in, for example, Miraglia, S. et al. (1997) Blood 90: 5013,
Uchida, N. et al. (2000) Proc. Natl. Acad. Sci. USA 97: 14720, Simmons, P.J. et al. (1991) Blood 78: 55, Prockop DJ (Cytotherapy (2001) 3: 393), Bohmer RM (Fetal Diagn Ther (2002) 17: 83) and Rowley SD et al (Bone Marrow
Transplant (1998) 21: 1253), Stem Cell Biology Daniel R. Marshak (Editor)
Richard L. Gardner (Editor), Publisher: Cold Spring Harbor Laboratory Press, (2001) and Hematopoietic Stem Cell Transplantation. Anthony D. Ho (Editor) :
Richard Champlin (Editor), Publisher: Marcel Dekker (2000).
A presently preferred source for adult stem cells is the hematopoietic system. Hence, according to a preferred embodiment of the present invention the stem cells are hematopoietic stem cells. Such stem cells can be derived from bone marrow, peripheral blood and neonatal umbilical cord blood. Methods of enriching white blood cells (mononuclear cells) for stem cells are well known in the art, including, selecting for CD34" expressing cells. CD34" cells include pluripotent stem cells and very early progenitor cells, which, under the appropriate conditions may revert to stem. cells, as they are not committed cells.
One most surprising result obtained while reducing the present invention - to practice was that stem cells present in the mononuclear cell fraction of blood (i.e., white blood cells), can undergo expansion using the methods of the present invention in a fashion similar to stem cells enriched CD34" cell fraction of blood. Hence, according to an embodiment of the present invention, the stem cells that undergo expansion are mixed (e.g., not separated from, not enriched) with committed cells. This embodiment of the present invention is of particular advantage because it relieves the tedious need for cell separation prior to ex-vivo culturing the cells.
In another embodiment, the cells are enriched for hematopoietic CD34" cells and are characterized by an absence, or significantly diminished expression of cell surface antigens CD38 and Lineage specific anti gens (Lin, including:
CD3, CD61, CD19, CD33, CD14, CD15 and/or CD4).
It was experimentally found that reducing the capacity of the stem cells in responding to the disclosed signaling pathways is reversible, e.g., inherently reversible. In some experiments, following 16-18 weeks in culture the cells ceased to expand and started to differentiate. In other wwords, cells expanded using the protocols of the present invention to not transform into cell lines.
Hence, by exposing such cells following sufficient expansion to growth conditions by which differentiation is induced, one would be able to direct the ex-vivo differentiation of the cells to desired direction, including ex vivo and in vivo cis - and trans-differentiation.
As used herein “cis-differentiation” refers to differentiation of adult stem cells into a tissue from which they were derived. For example, the differemtiation of CD34" hematopoietic cells to different committed/mature blood cells constitutes cis-differentiation.
As used herein “trans-differentiation” refers to differentiation of adult stem cells into a tissue from which they were not derived. For example, the differemtiation of CD34" hematopoietic cells to cells of different tissue origin, e.g., myJ/ocites constitutes trans-differentiation.
The stem cells used for cell expansion in context of the present invention can be obtained from any tissue of any multicellular organism including both animals and plants. Stem cells were shown to exist in many organs and tissues and are believed to exist in all tissues of animals, including, but not limited to, bone marrow (Rowley SD et al (1998) Bone Marrow “Transplant 21: 1253), peripheral blood (Koizumi K, (2000) Bone Marrow Transplant 26: 787, liver (Petersen BE et al (1998) Hepatology 27: 433) and brain (Pagano SF et al
(2000) Stem Cells 18: 295). It is anticipated that all such cells are expandable using thes methods of the present invention.
Reducing the capacity of the stem cells in responding to the above : antagonists and/or signaling pathways of the above receptors is Ty ex-vivo culturing the stem cells in a presence of an effective amount of at least one retinoic acid receptor antagonist, at least one retinoid X receptor antagonist and/or at least one Vitamin D receptor antagonist, preferably, for a time period of 0.1-50 %, preferably, 0.1-25 %, more preferably, 0.1-15 %, of an entire ex-vivo culturing period of the stem cells or for the entire period. In his respect it was surprisingly uncovered that an initial pulse exposure to an antagonist is : sufficiemt to exert cell expansion long after the antagonist was removed from the culturing set up.
Many antagonists to RAR, RXR and VDR are presently known, some of which are listed hereinafter.
The retinoic acid receptor antagonist used in context of thme different aspects and embodiments of the present invention can be:
AGN 194310; AGN 109; 3—(4-Methoxy-phenylsulfanyl)-3-methyl-butyric acid, 6-Methoxy-2,2-dimethvl-thiochroman-4-one,2,2-Dimethyl-4-oxo-thiochroman- 6-yltrifhaoromethane-sulfonate; Ethyl 4-((2,2 dimethyl-4-oxo-thiochroman-6-yl)ethynyl)-benzoate; Ethyl 4-((2,2-dEmethy 1-4-trifloouromethanensulfonyloxy -(2H)- thiochro-men-6-yl)ethynyl)-benzoate(41);
Thiochromen-6-yl]-ethynyl]-benzoate(yl); (p-[(E)-2-[3'4"-Dihydro-4,4'-dimethyl-7'-(heptyloxy)-2'H-1-benzothiospyran-6'yl] propenyJ] benzoic acid 1'1'-dioxide; 2E 4E 6 F-[7-(3,5-Di-t-butyl-4-n-butoxyphenyl)-3-methyl}-octa-2,4,6--trienoic . acid; 2E 4E,6 E-[7-(3,5-Di-t-butyl-4-n-propoxyphenyl)-3-methyl]-octa-2,4 6-trienoic acid; 2EA4E.6 E-{7-(3,5-Di-t-butyl-4-n-pentoxyphenyl)-3-methyl]-octa-2,4, é-trienoic acid; 2E,4E,6E-[7-(3,5-Di-t-butyl-4-n-hexoxyphenyl)-3-methyl}-octa-2,4,6-trienoic acid; 2E,4E,6E-[7-(3,5-Di-t-butyl-4-n-heptoxyphenyl)-3-methyl}-octa-2,4,6-trienoic s acid; 2E 4E,6E-[7-(3,5-Di-t-butyl-4-n-octoxyphenyl)-3-methyl]-octa-2,4,6-trienoic acid; (2E,4E,6E)-7-[3-t-butyl-5-(1-phenyl-vinyl)-phenyl}-3-methyl-octa-2,4,6-trienoic acid; 2E 4E,6E-[7-(3,5-Di-t-butyl-4-{[4,5-.sup.3
H.sub.2]-n-pentoxy} phenyl)-3-methyl}-octa-2,4,6-trienoic acid; (2E4E)-(1RS,2RS)-5-[2-(3,5-di-tert.butyl-2-ethoxy-phenyl)-cyclopropyl]-3-met hyl-penta-2,4-dienoic acid ethyl ester; (2E4E)-(1RS,2RS)-5-{2-(3,5-di-tert.butyl-2-ethoxy-phenyl)-cyclopropyl]-3-met hyl-penta-2,4-dienoic acid, (2E,4E)-(1RS,2RS)-5-[2-(3,5-di-tert.butyl-2-butoxy-phenyl)-cyclopropyl]-3-met hyl-penta-2,4-dienoic acid, (2E4E,6Z)-7-3,5-di-tert.butyl-2-e thoxyphenyl]3-methyl-2,4,6-octatrienoic acid; (2E,4E,6Z)-7-[3,5-di-tert.butyl-2-butyloxyphenyl}-3-methyl-2,4,6-octatrienoic acid; 4-(5,6,7,8-tetrahydro-5,5,8,8-tetramethyl-2-naphthalene-carboxamido) benzoic acid; (2E,4E)-3-methyl-5-[(1S,2S)-2-(5,5,8,8-tetramethyl-5,6,7,8-tetrahydro-naphthal en-2-yl)-cyclopropyl]-penta-2,4-dienoic acid; p-[(E)-2-[3',4'-Dihydro-4'4'-dimethyl-7'-(heptyloxy)-2'H- 1 -benzothiopyran-6'-yi
Jpropenyl]benzoic acid; 1',1'-dioxide, 4-(7,7,10,10-Tetramethyl-1-pyridin-3-ylmethyl-4,5,7,8,9,10-hexahydro-1H-naph to[2,3-glindol-3-yl)-benzoic acid; (2E,4E,6Z)-7-[3,5-di-tert.butyl-2-methoxyphenyl]-3-methyl-2,4,6-octatrienoic acid, (2E,4E,6Z)-7-[3,5-di-tert.butyl-2-ethoxyphenyl]-3-methyl-2,4,6-octatrienoic acid, (2E ,4E,6Z)-7-[3,5-di-tert.butyl-2-hexyloxyphenyl]-3-methyl-2,4,6-Octatrienoic : acid; (2E 4E,6Z)-7-[3,5-di-tert.butyl-2-octyloxyphenyl]-3-methyl-2 4,6-o-ctatrienoic acid; and
QREAE)-( 1RS,2RS)-5-[2-(3,5-di-tert-butyl-2-butoxy-phenyl)-cyclopropyl]-3-met hyl-penta-2,4-dienoic acid (2E, 4E,6Z)-7-(3-n-propoxy-5,6,7,8-tetrahydro-5,5,8,8-tetramethyln aphthalene-2 - -yD)-3-methylocta-2,4,6-trienoic acid, and4-(5H-2,3(2,5 dimethyl-2,5-hexano)-5-n-propyldibenzo[b,e][1,4]diazepin-11-yl)beenzoic acid, and 4-( 5H-2,3-(2,5-dimethyl-2,5-hexano)- 5methyl-8-nitrodibenzo[b,e][ 1,4]diazepin- 11~yl)benzoic acid, and 4- { [4-(4-Ethylphenyl!)2,2-dimethyl-(2H)-thiochromen-6-yljethynyl J benzoic acid, and 4-[ 4-2methyl-1,2-dicarba-closo-dodecaboran-1-yl-phenylcarbamoy-l}benzoic acid, and4-[4,5,7,8,9,10-hexahydro-7,7,10,10-tetramethyl-1-(3-pyridylmethyl)-anthraf 1,2 -b]pyrrol-3-yl]benzoic acid, and (3-pyridylmethyl)-]5-thiaanthra[2,1-b]pyrrol-3-yl)benzoic acid, andl (3-pyridylmethy!)-anthra[2m1 -dJpyrazol-3-yl]benzoic acid.
The retinoid X receptor antagonist used in context of the different aspects and embodiments of the present invention can be:
LGN100572, 1-( 3-hydroxy-5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphthalene-2-yl)ethanone, 1-( 3-propoxy-5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphthalene-2-yl)ethanone, 3«( 3-propoxy-5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphthalene-2-7yl)but-2-enen itri le, 3-( 3-propoxy-5,6,7,8-tetrahydro-5,5 8,8-tetramethylnaphthalene-2- -yl)but-2-enal, (2E,4E,6E)-7-3[-propoxy-5,6,7,8-tetrahydro
5,5,8,8-tetramethyl-2-naphthalene-2-yl}-3-methylocta-2,4,6-trienoic acid, 4-[3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)carbonyl] benzoic acid, : 4-[1-(3,5, 5,8,8-pentamethyl—5,6,7,8-tetrahydro-2-naphthyl)ethenyl] benzoic acid, 4-{1(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)cyclopropyl] : benzoic acid, 4-[1-(3,5,5,8,8-pentamethyl- 5,6,7,8-tetrahydro-2-naphthyl)ethenyl] benzenete trazole, 2-[1-(5,5,8,8-tetramethyl-5,6,7,8-tetrahydro-2-naphthyl) ethenyl]pyridine-5-carboxylic acid, : 2-[1-(3,5,5,8,8-pentamethyl- 5,6,7,8-tetrahydro-2-naphthyl)ethyl]pyridine-5-carb oxylic acid, ethyl-2-[1-(3,5,5,8, 8-pentamethyl-5,6,7,8-tetrah ydro-2-naphthyl)ethenyl]pyridine-5-carboxylate, 5-[1-3,5,5,8,8-pentamethyl-S,6,7,8-tetrahydro-2-naphthyl)ethenylJpyridine-2-car boxylic acid, 2-[1-(3,5,5,8,8—-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl) cyclopropyl]pyridine-5-carboxylic acid, methyl 2-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)cyclopropyl]pyridine— 5-carboxylate, 4-[1-(3,5, 5,8,8-pentamethyl-5,6,7 8-tetrahydro-2-naphthyl)ethenyl)-N-(4-hydroxyphenyt) benzamide, 2-[1-(3,5,5,8,8-Pentamethyl-5,6,7,8-tetrahydro-2-naphthyl) ethenyl } pyridine-5-carboxylic acid, 2-[1-(3,5,5,8,8-Pentamethyl-5, 6,7,8-tetrahydro-2-naphthyl)cyclopropyl]pyridine-5-carboxylic acid, 4-[(3,5, 5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)carbonyl]benzoic acid butyloxime, 4-[(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl) carbonyl]benzoic acid propyloxime, 4-[(3,5,5,8,8-pentamethyl-5, 6,7,8-terrahydro-2-naphthyl)carbonyl]benzoic acid cyanoimine, 4-[(3,5,5,8,8-pentamethyl-S ,6,7,8-tetrahydro-2-naphthyl)carbonylJbenzoic acid allyloxime, 4-[(3,5,5,8,8-pentamethyl-5 _6,7,8-tetrahydro-2-naphthyl)carbonyl]benzoic acid 4-(3-methylbut-2-enoic acid)oxime, and 4-[(3,5,5,8,8-pentamethyl-5 6,7 8-tetrahydro-2-naphthyl)carbonyl]benzoic acid
1-aminoethyloxime (2E 4E,6Z)-7-(3-n-propoxy-5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphthalene-2 ‘ y1)-3-methylocta-2 4 6-trienoic acid, and4-(5H-2,3(2,5 : dimethyl-2 5-hexano)-5-n-propyldibe=nzo[b,e]{ 1,4]diazepin-1 1-yl)benzoic acid, 5s and 4-(5H-2,32,5-dimethy)-2,5-hex ano)-Sm.
The Vitamin D receptor antagonist used in context of the different aspects and embodiments of the present invention can be: 1 alpha, 25-(OH)-D3-26,23 lactone; lalpha, 25-dihydroxyvitamin D (3); the 25-carboxylic ester ZK159222; (23S)- 25-dehydro-1 alpha-OH-D (3); (23R)-25-dehydro-1 alpha-OH-D (3); 1 beta, 25 (OH), Dj; 1 beta, 25(0OH),-3-epi-D5; (23S) 25-dehydiro-1 alpha(OH) D3-26,23-lactone; (23R) 25-dehydro-1 alpha(OH)D3-26,23-]actone and
Butyl-(5Z,7E,22E-(1S,7E,22E-(1S,3R,24R)-1,3,24-trihydroxy-26,27-cyclo-9,10 -secocholesta-5,7,10(19),22-tetraene—-25-carboxylate)
The above listed antagonists are known for their high affinity towards their respective cognate receptors. However, it may be possible for these molecules to be active towards other receptors.
According to an additional aspect of the present invention, there is provided an assay of determining whether a specific retinoic acid receptor antagonist, a retinoid X receptor antagonist or a Vitamin D receptor antagonist is an effective cell expansion agent. The assay according to this aspect of the present invention comprises culturimg a population of stem cells, e.g, CD34" hematopoietic cells, or cells of a substantially non-differentiated cell line, such as, but not limited to, USP-1 and USP-3 (Sukoyan MA (2002) Braz J Med Biol
Res, 35(5):535, C6, c2, Cr/A-3, DB 1 and B6-26 (US Patent No. 6,190,910), and
H9.1 and H9.2 (Odorico J. S. (2001 ) Stem Celis 19: 193) in the presence of the retinoic acid receptor antagonist, the retinoid X receptor antagonist or the
Vitamin D receptor antagonist and xnonitoring expansion of the cells over time, e.g., a few weeks to a few months. If increased expansion and decreased differentiation occurs, as compared to non-treated cells, the retinoic acid receptor antagonist, the retinoid X receptor antagonist or the Vitamin D receptor antagonist tested is an effective cell expansion agent. Preferably, culturing the : population of stem cells or cells of a substantially non-differentiated cell line is performed in a presence of an effective amount of a cytokine, preferably, an early acting cytokine or a combination of such cytokines, e.g., thrombopoietin (TPO), interleukin-6 (IL-6), an FLT-3 ligand and stem cell factor (SCF). This assay can be used, by one ordinarily skilled in he art, to determine which of the antagonists listed below is most efficient for the purpose of implementing the various methods, preparations and articles—of-manufacture of the present invention which are further described hereinafter. To determine most effective concentrations and exposure time for achieving optimal results with stem cells of different origins.
Additional objects, advantages, and novel features of the present invention will become apparent to one ordinarily skilled in the art upon examination of the following examples, which are not intended to be limiting.
Additionally, each of the various embodiments and aspects of the present invention as delineated hereinabove and as claimed in the claims section below finds experimental support in the following.
Reference is now made to the following examples, which together with the above descriptions illustrate the invention &n a non-limiting fashion.
Generally, the nomenclature used herein and the laboratory procedures utilized in the present invention include molecular, biochemical, microbiological and recombinant DNA techniques. Such techniques are } thoroughly explained in the literature. See, fo r example, "Molecular Cloning: A laboratory Manual” Sambrook et al., (1989); "Current Protocols in Molecular
Biology” Volumes I-III Ausubel, R. M., ed. (1994); Ausubel et al., "Current
Protocols in Molecular Biology", John Wiley and Sons, Baltimore, Maryland
(1989); Perbal, "A Practical Guide to Molecular Cloning", John Wi ley & Sons,
New York (1988); Watson et al., "Recombinant DNA", Scientifi ¢ American : : Books, New York; Birren et al. (eds) "Genome Analysis: A Laboratory Manual
Series", Vols. 1-4, Cold Spring Harbor Laboratory Press, New Y ork (1998); 5s amethodologies as set forth in U.S. Pat. Nos. 4,666,828; 4,683,202 5 4,801,531; 5,192,659 and 5,272,057; "Cell Biology: A Laboratory Handbook", Volumes 1-111 Cellis, J. E., ed. (1994); "Current Protocols in Immunology" V olumes 1-111
Coligan J. E., ed. (1994); Stites et al. (eds), "Basic and Clinical Immunology" (8th Edition), Appleton & Lange, Norwalk, CT (1994); Mishell and Shiigi (eds), "'Selected Methods in Cellular Immunology”, W. H. Freeman and Co., New
York (1980); available immunoassays are extensively described im the patent and scientific literature, see, for example, U.S. Pat. Nos. 3,791,932; 3,839,153; 3,850,752; 3,850,578; 3,853,987; 3,867,517; 3,879,262; 3,901,654; 3,935,074; 3,984,533; 3,996,345; 4,034,074; 4,098,876, 4,879,219; 5,011,771 and 5,281,521; "Oligonucleotide Synthesis" Gait, M. J., ed. (1984); “Nucleic Acid
Hybridization" Hames, B. D., and Higgins S. J., eds. (1985); "Transcription and “Translation” Hames, B. D., and Higgins S. J., eds. (1984); "Animal Cell
Culture” Freshney, R. I, ed. (1986); "Immobilized Cells and Emzymes" IRL
Press, (1986); "A Practical Guide to Molecular Cloning” Perbal, B., (1984) and "’Methods in Enzymology" Vol. 1-317, Academic Press; "PCR Protocols: A
Guide To Methods And Applications”, Academic Press, San Diego, CA (1990);
PMarshak et al., "Strategies for Protein Purification and Characterization - A
Laboratory Course Manual" CSHL Press (1996); all of which are incorporated by reference as if fully set forth herein. Other general references are provided throughout this document. The procedures therein are believed to be well ’ Known in the art and are provided for the convenience of the rea der. All the
Enformation contained therein is incorporated herein by reference.
EXAMPLE 1
RAR-ANTAGONISTS AND THEIR USE IN EX-VIVO HEMATOPOIETIC
CELL EXPANSION
Material and Experimental Methods
High-Affinity retinoic acid receptor antagonist (RAR) synthesis:
Synthesis of the RAR antagonist 4-[[4-(4-ethylphenyl)-2,2-dimethyl- (2H)-thiochomen-6-yl)]-benzoic acid, (AGN 194310):
The RAR antagonist AGN194310 was synthesized according to the procedure described by Johnson (26), with some modification.
Synthesis of 3-(4-methoxyphenylthio)-3-methyl-butyric acid:
A heavy-walled screw—cap tube was charged with 3-methyl-2-butenoic acid (13.86gm) 3,3-dimethylacrylic acid, (138.4mmol), 4-methoxythiophenol (143.2 mmol), and piperidine (41.6 mmol) [Aldrich]. The mixture was heated to 105-110 °C for 32 hours, then cooled to room temperature. The reaction mixture was dissolved in ethyl acetate (EtOAc) (700 ml) with stirring, and the resulting solution was washed with 1M aqueous HCI (50 ml x 2), water (50 ml), and saturated aqueous NaCl (50 ml). The organic solution was thereafter dried over NaSO,. Concentration of this organic solution under reduced pressure afforded an oil and 2 days imcubation at — 20 °C yielded a crystalline solid.
Forty ml of pentane were added to the solid, which was then crushed and filtered. The solid was washexd on filter paper with pentane (20 ml, 2 times) to yield the product 3-(4-methox yphenylthio)-3-methyl-butyric acid, as pale yellow crystals (31.4 grams, 94.4 % yield, m.p. 62-64 °C), ['H-NMR(CDCl,): d7.5 (t, 2s 2H, J=8Hz), d6.9 (t, 2H, J=6.7Hz), d3.9 (s, 3H, J=16.1Hz), d2.6 (s, 2H), d1.3 (5s, 6H)].
Synthesis of 3-(4-meth oxyphenylthio)-3-methyl-butyryl chloride: 93.62 mmol oxalyl chloride in 10 ml benzene was added to a solution of 3-(4-methoxyphenylthio)-3-methyl-butyric acid in 100 ml of benzene at room temperature, for 30 minutes. During the addition of the oxalyl chloride , the solution tumed yellow. After stirring the reaction: mixture for 4 hours at room temperature, the reaction solution was cooled to 5 °C and washed with ice cold % aqueous NaOH (5 ml x 6) (a large volume o f gas was released during this procedure), followed by ice-cold water (15 ml x 2) and finally saturated aqueous s NaCl (15 ml). The organic solution was dried ©ver NaSO, and concentrated under reduced pressure to give the acyl chloride product as a clear yellow oil.
This material was used without further purification in the next step. ['H-NMR (CDCls): d3.8 (s, 3H), d3.1 (5, 2H), d1.4 (s, 6H)].
Synthesis of 6-methoxy-2,2-dimethyl-thiochroman-4-one:
A solution of Tin (IV) chloride in 30 mul dichloromethane was added dropwise to a solution of 3-(4-methoxyphenylthio)-3-methyl-butyryl chloride in 180 ml dichloromethane, at 0 °C, yielding a dark red solution. After stirring the reaction mixture at 0 °C for 2 hours, the reaction was quenched by the slow addition of 115 ml water. The dark red reaction mnixture became yellow.
The organic layer was washed with 1M aqueous HCl (50 ml), 5 % aqueous NaOH (50 ml) and a saturated solution of NaCl (50 ml) and was thereafter dried over magnesium sulfate. The wesulting organic solution was concentrated under reduced pressure, and distilled under vacuum (135-142 °C, 0.6 mm/Hg) to obtain 6-methoxy-2,2-dimethyl-thiochroman-4-one as a residual pale-yellow oil (11 grams, 80.7 %); ['H-NMR (CDCl): 47.6 (s, 1H), d7.1 (s, 1H), d7.0 (s, 1H), d3.8 (s, 3H), d2.86 (s, 2H), d1.46 (s, 6H)].
Synthesis of 6-hydroxy-2,2-dimethyl-thiochroman-4-one:
Boron tribromide (20 grams) in 80 ml dichloromethane was added over a 20 minute period to a solution of 6-methoxy-2,2~dimethyl-thiochroman-4-one in 50 ml dichloromethane. The reaction mixture w-as cooled to —23 °C and stirred for 5 hours, cooled to -78 °C, then quenched by the slow addition of 50 ml water (0.5 hour). Following warming to room tempe rature, the colorless precipitate was filtered. After separation of the organic layer, the aqueous layer was extracted with 120 ml dichloromethane. The combined organic layers were washed with saturated aqueous NaHCO; (50 m.1), water (50 ml) and saturated aqueous NaCl, then dried over MgSO,. Removal of the organic solvent under recluced pressure gave a green solid (6 grams of crude product). This product was dissolved in 100 ml diethyl ether and the resulting solution was diluted with 3000 ml petroleum ether. Ovemight incubation at -15 °C yielded a crystalline s product (2.3 grams, 41 % yield, mp. 122-126 °C). The filtrate was evaporated umder vacuum, and the residue (3.42 grams) was dissolved in 30 ml diethyl ether. The ether solution was diluted with 150 ml petroleum ether and the resulting mixture was kept in a freezer at — 20 °C ovemight. Precipitation and filtration of the solution yielded 1.5 grams of the product 6-methoxy-2,2-dimethyl-thiochroman-4-one. This compound was re precipitated by dissolution in 30 ml diethyl ether,. then diluted with 20 ml petroleum ether. Incubation at 4 °C overnight, yield ed 1 gram (80.7 % yield, m.p. 135-142 °C, 0.6mm/Hg) of the green crystalline product, 6-hydroxy-2,2-dimethyl-thiochroman-4-one. ['H-NMIR (CDC): d7.8 (s, 1H), 1s d7.7(s, 1H), d7.1 (s, 1H), d2.8 (s, 2H), d1.45 (s, 6H)].
Synthesis of 2,2-dimethyl-4-oxo-th dochroman-6-yl-trifluoro- nz ethanesulfonate:
Trifluoromethanesulfonic anhydride was added to a stirred solution of 6~hydroxy-2,2-dimethyl-thiochroman-4-one in anhydrous pyridine. The mixture was stirred for 4 hours at 0 °C, then stirred overniight at room temperature.
C oncentration under high vacuum yielded a residue that was treated with diethyl ether (75 ml). The ether solution was separated fromm the precipitate resulting from the formation of a salt between pyridine and trifEuoromethanesulfonic acid.
The ether solution was washed with water, then aqueous NaCl, and dried over
MgSO, After removing the ether, the residue was crystallized. Traces of ) pyridine were removed under high vacuum. 0.7 gramn of the crude product was obtained, and was further purified by column chromatography using 14 grams silica, and a solution of 200 ml petroleum ether:ethyl acetate (95:5) (using 15 ml eluent solution x 13). After evaporation of the product fractions, 0.62 gram of 2 ,2-dimethyl-4-oxo-thiochroman-6-yl-trifluoro-methanesulfonate was obtained as colorless crystals (76.5 % yield, m.p. 70-74 °C), ['H-NMR (CDC1,): d7.9 (s, 1H), d7.3 (s, 2H), d2.8 (s, 2H), d1.4 (s, 6H)).
Synthesis of 2,2-dimethyl-6-trimethylsilanyl-ethynyl-thEochroman- 4-one:
A solution of 2.2-dimethyl-4-oxo-thiochroman-6-yl-trifluoro " -metha nesulfonate in triethylamine and dimethylformamide was sparged with argon for 10 minutes. Trimethylsilylacetylene and bis[tripheny-lphosphine] ~ palladi um(ll) chloride were added to this solution. The reaction mixture was heated in a bath at 95-100 °C and maintained a reaction temperature of 88-90 °C, for 5 hours. The reaction solution was cooled to room tempera ture, diluted with 24900 ml water, and extracted with 100 ml ethyl acetate (60 mL x 3). The resultimg organic phase was washed with water (50 ml x 2), and brine (50 ml).
Finally, the organic solution was dried over MgSO, evaporated under reduced pressure, and the resulting residue was further purified by column chromatography using 42 grams silica, and an eluent system composed of 400 ml petroleum ether:ethyl acetate (97:3), yielding 2,2-dirnethyl-6-trimethylsilanyl-ethynyl-thiochroman-4-one (1.82 grams, 76.4 % yield, m.p. 67-70 °C); ['H-NMR (CDCl;): d7.8 (s, 1H), d7.3 (s, 2H), d2.8 (s, 2H), d_1.4 (s, 6H), d0.23 (s, SH)].
Synthesis of 6-ethynyl-2,2,-dimethylthiochroman-4-one:
A solution of 2,2-dimethyl-6-trimethylsilanyl-ethynyl-thioch.roman-4-one in methanol and potassium bicarbonate was stirred overnight at room temperature. The potassium carbonate was dissolved and the reaction was evapowated to a reduced volume of 30-40 ml, diluted with water (to an approximate volume of 70-100 ml), cooled in an ice-water bath and extracted . with diethyl ether (60 ml x 3). The combined organic layers were washed with mR water and saturated aqueous NaCl (30 ml) and dried over MgSO.
Removal of the solvent under reduced pressure afforded 6-ethy-nyl-2,2-dimethylthiochroman-4-one as an orange solid (1.3 gram, 97.7 % 30 yield, mp. 63-66 °C)-['H-NMR (CDCL): 47.8 (s, 1H), d7.3 (s, 2H), d3.0 (s,
1H), d 2.8 (s, 2H), d1.4 (s, 6H)].
Synthesis of ethyl 4-iodobenzoate: :
A mixture of 4-iodobenzoic acid, 25 ml ethyl alcohol and 20 ml solution of dry HCl in ethyl alcohol was refluxed for 2 hours. The solid was dissolved after 1 hour of boiling. The reaction solution was cooled to room temperature and evaporated under vacuum to a volume of 10 ml. A lower organic layer formed with the chemical conversion of the acid to the ester. The resulting mixture was cooled in an ice bath. To this mixture 80 ml of diethyl ether , dry sodium hydrogen carbonate (1 gram) and 50 grams of ice were added. This solution was stirred, washed by dissolution of a saturated solution of sodium bicarbonate in 50 ml water and water, dried over sodium sulfate, and evaporated under vacuum, yielding ethyl 4-iodobenzoate as a liquid oil product (5.43 gram, 96.1 % yield) "H-NMR (CDCl;): d7.8 (s, 1H), d7.79 (s, 1H), 7.6 (s, 1H), d4.4 (d, 2H, J=7.1Hz), d1.4 (s, 3H)].
Synthesis of ethyl 4-[(2,2-dimethyl-4-oxo-thiochroman-6-yl)ethynyl]- benzoate:
A solution of 6-ethynyl-2,2-dimethyl-thiochroman-4-one and ethyl 4-iodobenzoate in 80 m! triethylamine was purged with argon for 10 minutes. 0.7 gram Pd[PPh;},Cl, and 0.19 gram Cul were added to this solution. The solution was sparged with argon for an additional 5 minutes, then stirred for 2 days at room temperature. The reaction mixture was filtered through a pad of celite with a diethyl ether wash. The filtrate was evaporated under reduced pressure. The solid residue was purified by column chromatography (40 grams silica, petroleum ether:ethyl acetate 95:5, 750 ml eluent solvent system) to yield ethyl 4-[(2,2-dimethyl-4-0oxo-thiochroman-6-yl) ethynyl]-benzoate (1.26 gram, 56.5 % yield, m.p. 102-104 °C). ['H-NMR(CDCly): d8.275 (s, 2H), d7.6 (s, 3H), d7.5 (s, 1H), d7.2 (s, 1H), d4.3 (1, 2H, J=7), d2.8 (s, 2H), d1.48 (s, 3H)].
Synthesis of Ethyl 4-[(2,2-dimethyl-4-trifluoromethanesulfonyloxy)- (2H)-thiochromen-6-yl)et hynyl[benzoate:
A solution of sodium bis(trimethylsilyl)amide (0.6 M solution in toluene)
and 10 ml of tetrahydrofuran was cooled to - 78 °C and a solution of ethyl 4-{(2,2-Dimethyl-4-oxo-thiochroman-6-yl)ethynyl Jb-enzoate in 10 ml tetrahydrofuran (THF) was slowly added. After 30 minutes, a solution of i 2-[N,N-bis(trifluoromethanesulfonyl)aminolpyridine in 7 ml THF was added to s the reaction mixture. After 5 minutes, the cooling bath was removed and the reaction solution was warmed to room temperature, stirred overnight and quenched by the addition of a saturated aqueous solution of NH,CI (20 ml).
Two solvent layers were formed. The solution mix ture was extracted with ethyl acetate (75 ml). The combined organic layers were washed with 5 % aqueous
NaOH (10 ml), water (15 ml x 2), dried over MgSO, then concentrated under reduced pressure. The crude product (1.74 graxn) was purified by column chromatography with 35 grams silica, and 2 % ethyl acetate/petroleum ether (500ml, 20 x 25 ml) eluent system. After evaporation of the combined eluted product fractions, ethyl 4-[(2,2-dimethyl-4-trifluoxromethanesulfonyloxy)-(2H)- thiochromen-6-yl) ethynyl] benzoate (1.16 gram, 7°1 % yield, m.p. 100-104 °C) was obtained, as a pale yellow solid. ['H-NMR (CDCl,): d8.2 (s, 2H), d7.6 (s, 3H), d7.5 (s, 1H), d7.2 (s, 1H), d6.0 (s, 1H), d4.4 (t, 6H, J=24Hz)].
Synthesis of ethyl 4-[[4-C4-ethylphenyl)-2,2-dimethy!- [2H]-thiochromen-6-yl]-ethynyl]-benzoate: 7.25 ml of 1.7 M LiC(CH;); in pentane ~were added to a solution of p-bromo-ethyl-benzene (cooled to - 78 °C) in 4 ml of THF. A solution of 658.7 mg zinc chloride in 8 ml THF was added, and the reaction mixture was warmed to room temperature, stirred for 40 minutes, then transferred to a second flask containing ethyl 4-{(2,2-Dimethyl-4-trifluoromethylsulfonyl)-(2H)- thiochromen-6-yl)ethynyl]benzoate and Pd(PPh;)s in 8 ml THF. The resulting solution was heated to 50 °C for 2 hours, stirred a& room temperature overnight, ] then quenched by addition of saturated aqueous NH,Cl (10ml) for 10 minutes.
Two layers formed. The mixture was extracted wiith 75 mi ethyl acetate and the combined organic layers were washed with water- (10 ml), and saturated NaCl.
After drying the organic solution over MgSQO,, the solution was concentrated ni under reduced pressure, and purified by column charomatography using 24 grams silica, and a petroleum ether:ethyl acetate (95:5) eluent system (200 ml) yielding ethyl 4-[[4-(4-cthylphenyl)-2,2-dimethyl-[2HK]-thiochromen-6-yl]-ethynyl}- } benzoate ['H-NMR (CDCl,): d8.2 (s, 2H), 47.6 (s, 27H), d7.4 (s, 2H), d7.2 (s, 1H), d7.1 (s, 2H), d7.0 (s, 2H), d6.0 (s, 1H), d4.4 (t, 2H, J=24Hz), d2.8 (t, 2H,
J=15Hz), d1.6 (s, 6H), d1.4 (t, 3H, J=14Hz)].
Synthesis | of 4-[[4-(4-EtPsylphenyl)-2,2-dimethyl-(2H)- thiochroman-6-ylj-ethynyl]benzoic acid:
Two ml of a 2 M solution of NaOH were added to a solution of ethyl 4[[4~(4-ethylphenyl)-2,2-dimethyl-[2H]-thiochronnen-6-yl]-ethynyl]benzoate in
THF and ethanol. The solution was heated to 40 °C, stirred overnight, then cooled to room temperature. The reaction mixture was acidified with 1 N HCI (4 ml). At the beginning of the process, the reaction mixture formed a heterogeneous system. The mixture was extracted with ethyl acetate (25 ml x 2). The combined organic layers were washed with 10 ml water, saturated aqueous NaCl, and dried with NaSO,, and the solvent was removed under reduced pressure. The residual solid (0.31 gram) was recrystallized from acetonitrile (25 ml) to yield 4-[[@-(4-ethylphenyl)-2,2-dimethyl- (2H)-thiochroman-6-yl}-ethynylJbenzoic acid, (A -GN194310) (0.236 gram, 70 % ) as a colorless solid (m.p. 210-212 °C) ['H-NIMR (DMSO-d6): d8.2 (s, 2H), d7.8 (s, 2H), d7.6 (s, 2H), d7.4 (s, 2H), d7.2 (s, 2H), d7.0 (s, 1H), d6.0 (s, 1H), d2.6 (t, 2H, J=35Hz), d1.6 (s, 6H), d1.4 (t, 3H, J=46Hz)}.
Mononuclear cell fraction collection and purification:
Human blood cells were obtained from umbilical cord blood from female patients following full-term, normal delivery (imformed consent was obtained).
Samples were collected and processed within 12 hours postpartum. Blood was mixed with 3 % Gelatin (Sigma, St. Louis, MO), sedimented for 30 minutes to remove most red blood cells. The leukocyte-rich fraction was harvested and layered on a Ficoll-Hypaque gradient (1.077 eram/ml; Sigma), and centrifuged at 400 g for 30 minutes. The mononuclear cell fraction in the interface layer was collected, washed three times and resuspended in phosphate-buffered saline (PBS) solution (Biological Industries) containing 0.5 % bovine serum albumin ) (BSA, Fraction V; Sigma).
Purification of CD34" cells from mononuclear cell fractions:
To purify CD34" mononuclear cells, the fraction was subjected to two cycles of immuno-magnetic separation using the MiniMACS® or Clinimax®
CD34 P rogenitor Cell Isolation Kit (Miltenyi Biotec, Auburm, CA) as per manufacturer's recommendations. The purity of the CD34" population obtained ranged from 95 % to 98 % as was determined by flow cytometry (see below).
Two further purify the CD34" population into CD34°38 or the CD34" Lin’ sub-fracttions, the purified CD34" cells were further labeled for CD38 (Dako
A/S, Glostrup, Denmark) or lineage antigens (BD Biosciences, Erermbodegem,
Belgium). The negatively labeled fraction was measured and sowted by a FACS sorter.
For CD34'Lin™ purification, the CD34" fraction was depleted from cells expressing lineage antigens using a negative selection column (StemCell
Technol-ogies, Vancouver, BC, Canada).
Ex-vivo expansion of CD34" cell populations:
CD34" expressing purified cells above were cultured in 24-well Costar
Cell Culture Clusters (Coming Inc., Corning, NY) or culture bags (American
Fluoroseal Corp), at a concentration of 10? cells/ml in alpha medium (Biological
Industries, Beit Haemek, Israel) supplemented with 10 % fetal bovine serum (FBS, Biological Industries). The following human recombinant cytokines were 25s added: Thrombopoietin (TPO), interleukin-6 (IL-6), FLT-3 ligand and stem cell factor (SCF), all at final concentrations of 50 ng/ml each, though occasionally : IL-3, at a concentration of 20 ng/ml, was added either together or instead of
SCF. For non-hematopoietic cell differentiation, FGF, EGF, NGF, VEGF, LIF or Hep atocyte growth factor (HGF) were used to supplement the growth medium, cither alone or in various combinations. All cytokines used were purchased fromm Perpo Tech, Inc. (Rocky Hill, NJ). The cultures were incubated -at 37 °C, 5% CO; in a humidified atmosphere.
Alternatively, whole mononuclear fraction cells (MNC) wee isolated, cultured and supplemented with cytokines, as above.
At weekly intervals, cell cultures were toped and semi-depogpulated and were supplemented with fresh medium, serum and cytokines or supplemented with fresh growth medium, alone. At predetermined time points, cells were harvested, stained with trypan blue, counted, and cell morphology was determined via the use of cytospin (Shandon, UK)-prepared smears stained with
May-Grunwald/Giemsa solutions.
RAR antagonist supplementation of ex-vivo hematopoietic stem/progenitor cell cultures:
CD34 purified and whole MNC cultures were prepared and maintained as described above. AGN 194310 RAR antagonist was added to test cultures at concentratioms ranging from 1 x 10 — 1 x 10" M [or 410 pg/l to 4.1 x 10° ug/l]. The antagonist was added for a predetermined, limited period, for up to three weeks Or continuously during the entire culture period.
MorpPFiological assessment:
Morphological characterization of the resulting culture populations was accomplished on aliquots of cells deposited on glass slides wia cytospin (Cytocentrifimge, Shandon, Runcorn, UK). Cells were fixed, stained with
May-Grunwald/Giemsa stain and examined microscopically.
Surface antigen analysis:
Cells wvere harvested, washed with a PBS solution containing | % bovine sera albumin (BSA) and 0.1 % sodium azide (Sigma), and stained a t 4 °C for 60 minutes witha fluorescein isothiocyanate or phycoerythrin-conjugated antibodies (all from Imnmunoquality Products, the Netherlands). The cell s were then washed with the same buffer and analyzed by FACS caliber or Facstarplus flow cytometers. Cells were passed at a rate of 1000 cells/second, using saline as the sheath fluid. A 488 nm argon laser beam served as the light source for excitation. Emission of ten thousand cells was measured using logarithmic amplification, and analyzed using CellQuest software. Negative control staining of cells was accomplished with mouse IgG-PE (Dako A/S Glostrup, . Denmark) and mouse IgG-FITC (BD Bi osciences, Erembodegem, Belgium).
Determination of CD34 and other hematopoietic marker expression:
CD34 surface expression on shoxt and long-term cultures initiated either with purified CD34" cells or the entire MNC fraction was determined as follows: CD34" cells were positively reselected (Miltenyi kit) and counted.
Purity was confirmed by subsequent FA.CS and cell morphology analysis.
Reselected CD34" cell subsets were stained for the following combination of antigens: CD34PE/CD3 8FITC and CD34PE/38, 33, 14, 15, 3, 4, 61, 19 (Lin) FITC. The fraction positive for CD34 and negative for CD38 was defined as CD34"CD38". The fraction positive for CD34 and negative for LIN was defined as CD34 Lin" cell fraction.
Cell population calculations:
FACS analysis results are given as percentage values of cells. Absolute numbers of subsets are calculated from the absolute number of CD34" cells.
Determination of baseline levels of CD34"/CD38- and CD34"/Lin” cells was conducted as follows: CD34" cells were purified from 3 thawed cord blood units and stained for the above markers. The mean of these experiments was considered as the baseline value.
Total cell counts, numbers of CID34" cells and subsets, and CFU numbers are presented as cumulative numbers, with the assumption that the cultures had not been passaged; i.e., the number of cells per ml were multiplied by the number of passages performed.
Assaying Colony Forming Unie (CFU) ability: ] Cells were cloned in semi-solid, methylcellulose-containing medium supplemented with 2 IU/ml erythropoietin (Eprex, Cilag AG Int., Switzerland), stem cell factor and IL-3, both at 20 ng/ml, and G-CSF and GM-CSF, both at 10 ng/ml (all from Perpo Tech). Cultures were incubated for 14 days at 37 °C, 5 %
CO; in a humidified atmosphere.
Determination of LTC-CFUc values:
Briefly, the ability of the cultures to maintain self-renewal was measured by determination of the content of colony forming unit cells in the long and extended long-term cultures (LTC-CFUc), as described in the references hereinabove.
Experimental Results
RAR antagonist treatment of enriched CD34" populations alters surface differentiation marker expression res ulting in large numbers of cells with a less-differentiated phenotype in short-term cultures:
In order to determine retinoid receptor antagonist effects on the ex-vivo expansion of stem cells, CD34" cell enrichesd cultures were initiated in the presence of a combination of 4 cytokines with and without different concentrations of the retinoic acid receptor antagonist AGN 194310. Two weeks after the initial seeding, the percentage Of cells bearing the CD34" marker (considered to be mostly committed progenitor cells), as well as the percentage of cells bearing the markers CD34"/CD38" and CD34’Lin” (considered to represent the stem and early progenitor compamtment) was ascertained by FACS analysis.
The FACS analysis plots are shown @in Figures 1A-C. Retinoic acid receptor (RAR) antagonist treated cultures contained similar numbers of total and CD34" cells as compared to cytokine-only treated cultures. RAR antagonist "treatment completely abolished the expression of the CD38 antigen and concurrently, significantly inhibited the expression of the additional differentiation associated antigens CD33, CD 14, CD15, CD4, CD3, CD19 and
CD61, which was a totally unexpected phenomenon. Table 1 below summarizes the data from the FACS analysis.
Table 1
No. of cells
BN Ey
I LCR
In an additional set of experiments, the stem and early progenitor cell subsets were measured following 2 weeks expansion from a re-selected CD34" s cell fraction. After two weeks in culture, CD34" cells were re-selected and analyzed by FACS, as above, for the presence of the surface markers
CD34°CD38 and CD34'Lin” (Figure 2). RAR antagonist-treated cultures of reselected CD34" cells revealed a 1000-fold increase in CD34'CD38" and a 500-fold increase in CD34°Lin" surface expression. In marked contrast, reselected control cultures treated with cytokines alone revealed only a 36-fold expansion of the CD34'CD38 and an 8-fold expansion of the CD34'Lin’ compartments. Despite the marked differences in surface antigen expression, the total number of cells, and total number of CD34" cells was compearable in all cultures. Thes e results indicate that RAR antagonists preferably emable marked i5 proliferation, yet limited differentiation of the stem cell compartanent. RAR antagonists thws directly impact the high fold expansion of these rare cells during the short-term culture period. It could also be concluded that the antagonists do not have any positive or negative effect on more mature, committed CD 34” cells.
RAR antagonist treatment of enriched CD34" populations alters surface differentiation marker expression resulting in large numbers of cells with a less-difjferentiated phenotype in long-term cultures:
In order to find out whether the RAR antagonists potentiate a stem cell fraction with higher self-renewal ability, the effect of a limited, sh ort-term (2-3 weeks) RAR antagonist culture treatment was tested on long-term expansion of
CD34" cells and subsets. Cultures were treated with RAR antagonists for the first three weeks only amd then incubated for an additional eight weeks in the absence of the antagonist. In order to determine the effect of the antagonist on } short and long term expansion of CD34+ cells, representative samples were s taken from the cultures at the time intervals indicated (Figure 3), for re-selection of CD34+ cells. CD34" surface expression was again determined by FACS analysis following a positive selection step (Figure 5B). During the first three weeks of incubation there were no significant differences between control and
RAR antagonist treated cultures in terms of the numbers of CD34" bearing cells. Following an additional eight weeks of incubation (week 11 of the culture), the RAR antagonist pre-treated cultures revealed a continuous, long-term increased expression of surface CD34+ antigen (Figure 3A) whereas no CD34" cells could be detected in the control cultures. . A 92-fold increase in expression was seen in RAR antagonist treated cultures between week three to 1s eleven and a 1621-fol d expansion of this compartment occurred since the initiation of the cultures.
Expression of the CD34'CD38 and CD34'Lin surface markers was verified in a highly purified, CD34+ re-selected fraction (Figure 3B-C). After two weeks in culture, while control samples revealed a modest 10-fold increase in CD34'Lin surface expression, RAR antagonist treated cultures expanded by a marked 530-fold. CID34°Lin” expression at week eleven, 9 weeks after the termination of the treatrment with the antagonist, revealed a 16,700-fold increase in CD34'Lin‘expression. Comparison between the fold-expansion of RAR antagonist treated cultures versus that of control cells indicates that only the former enables a significant continuous proliferation of stem cells in extended long-term cultures. The continued expansion of stem cells in the absence of
RAR antagonists indicates that even a relatively short pulse with the antagonist is sufficient to modify stem cell responses.
In an additional experiment, cultures were treated for one week only with cytokines only (controB) or with cytokines and the RAR antagonist. A marked long-term effect of the RAR antagonist was noticed at week 13 of incubation, as is demonstrated in the results presented in Table 2 below. At week 20, the RAR ) antagonist pre-treated cultures deteriorated and the cells underwent normal } differentiation, though in a slower kinetic that the control. These results indicate that a one-week RAR antagonist treatment is sufficient for dramatically modulating the proliferation ability of stem cells in ex-vivo conditions as the RAR antagonist transiently potentiate stem cell proliferation yet maintains their self-renewal ability.
Table 2
Control (week 13)
Control (week 20) (week 13)
El I (week 20)
The limited extensive and durable cell proliferation enabled by the RAR antagonist is further demonstrated in another experiment, where it was shown that ex-vivo cultures supplemented with the RAR antagonist AGN194310 10”
M or 0.41 microgranvliter) enabled cell proliferation, only until 11 weeks post initial seeding of culture cells (Figure 4). CFU forming ability was assayed as well, yet peak colony forming unit ability preceeded peak absolute number of
CD34" cells by approximately one week, whereupon a precipitous decline in ” proliferation was evident, at which point cellular differentiation occurred, as evidenced by the loss of clonogenic (CFU forming ability) potential of the culture. These results, which describe a normal ®behavior of stem cells, namely extensive proliferation followed by differentiataon are in marked contrast to previous reports that integration of a dominant regative retinoid receptor gene sustain infinite proliferation, in other words, resulted in the creati on of cell lines (Muramatsu M, Biochem Biophys Res Commun 2001 Jul 277:285(4):891-6 ) “reve Tsible integration of the dominant negative retinoid receptor gene for ex ] vivo expansion of hematopoietic stem/progenitor cells), whereas in the present invention, cells were fully capable of normal differentiation, following extended ex-vivo proliferation.
A representative FACS chart plot of CD34" cells 2 and 11 weeks following re-selection is shown in Figure 5. While control culgures expressed - markers for a more differentiated state, RAR antagonist treated samples expressed a less differentiated phenotype, as evidenced by the leftward shift in expression profile. These findings indicated that although not limeage negative, most of the CD34" cells derived from RAR antagonist treated cultures expresssed fewer lineage related surface markers.
RAR antagonist treatment of mononuclear cell populat&ons expands a 1s popudation of cells with a less-differentiated phenotype
Mononuclear cell fractions cultured in the presence of R.AR antagonists and «cytokines similarly revealed a significant increase in the number of
CD34+Lin- cells (78 %, 24 %) as quantitated by FACS amalysis from a reselected, highly purified CD34+ cell fraction, as compared to ceontrols, 2 and 5 weeks (respectively), after initial seeding (Table 3). However, most remarkable is that these cells responded to the RAR antagonists and. expanded an undifferentiated population, even in mixed culture conditions, without prior purification of the CD34" population. RAR antagonist treatmen-t was sufficient to stimulate specific expansion of the stem/progenitor cell compartment, as 5 weeks post seeding, while control MNCs had no detectable CD34" population,
RAR antagonist treated cultures revealed significant numbers of CD34" cells, i and those that were lineage marker deficient. Thus, any factors elaborated by the MINC culture cells that suppress CD34" cell survival in control samples are insufficient to override the signal provided by the RAR antagomist to elaborate this compartment.
Table 3
Exparasion of CD34'/Lin” mononuclear cells
Ewes : Cytokines | Cytokines +RAR
I = aa LL I IR
Cytokines | Cytokines +RAR
I
Eas Ll NC LR
Fd ol NC NC LN wo | | wi * Cumulative value
RAR antagonist treatment enhances long-term culture colony forming unit (LTC-CFUc) abidity
Demonstration of a culture’s ability to form colony forming units (CFUs) is another functional, in vitro method for verifying the presence of stem and early progenitor cells with a high self-renewal potential. Here it is dermonstrate that culture pre-treatment with RAR antagonists enabled greater expansion of cells with a self-renewal capacity as evidenced by the presence of imcreasing numbers of CFU cells: during the extended long-term culture period.
Long-term CD34" cell cultures were supplemented with a combination of . 15 4 cytokines, FIt3, TPO, IL-6 and IL-3, with and without varying predetermined concentrations of the RAR antagonist AGN 194310. RAR antagonist treatment of the cultures was fo-r a limited period of three weeks or was continuosus during the entire culture period. The ability to form CFUs was deterrmined for long-term (6 weeks) cusltures treated with 2 doses of the RAR antagonist for a short pulse or continuosusly and was compared to control samples treated with cytokines alone. Long-term cultures pulsed for the first 3 weeks with the . antagonist revealed a S-fold increase in CFU content as compared to control cultures (Figures 6A and 6B. Enumeration of mix-colonies indicated that control cultures did net contain any mix-colony forming unit cells, whereas antagonist treated cultwres contained a higher number of cells with CFU-mix potential (Figure 7).
RAR antagonist treatment enhances extended long-term culture colony forming unit (LTC-CF Uc) ability:
The ability to form CFUc was determined for extended long-term (8-10 week) cultures treated with the RAR antagonists, as well. The differences in
CFU content were significantly more pronounced during this culture period.
RAR antagonist treatment markedly increased CFUc content between week 6 to 10, as compared to control cultures, which lost the ability to regenerate cells with CFU potential (Figures 6A and 6B) RAR antagonist pulse-treatment or continuous treatment i ncreased CFU content by 15 x 10°. Pulse treatment with the antagonist yielded the highest level of CFU-mix content, as well (Figure 7)
EXAMPLE 2
RAR-ANTAGONISTS AND THEIR USE IN EX-VIVO HEPATOCYTE
EXPANSION
Material and Experimental Methods
Isolation and Culture of Primary Hepatocytes:
Three intact livers were harvested from 3 week old VLVC female mice (Harlan Laboratories, Jerusalem, Israel), dissected and washed twice with
DMEM (Beit Haemekk, Israel), incubated with DMEM in the presence 0.05% collagenase for 30 mimutes at 37 'C, ground and passed through a 200 pm mesh sieve, yielding individual hepatocytes. Cells were washed twice and viability was ascertained with trypan blue. Cells were plated in collagen-coated, 35 mm tissue culture plates at a density of 4-x 10* live cells/ml in F12 media : i (containing 15 mM Hepes, 0.1% glucose, 10 mM sodium bicarbonate, 100units/ml penicillin-streptomycin, glutamine, 0.5 units/ml insulin, 7.5m cg/ml hydrocortisone, and 10% fetal bovine serum). Medium was changed after 12 hours, the cells were washed twice with phosphate buffered saline (PBS) and new medium was added. Medium was changed twice a week.
Hepatocytes were also grown in the presence of Epidermal Growth
Factor (EGF),Platelet-Derived Growth Factor B chain (PDGF-BB),Fibroblast growth Factors (FGF-4) and Hepatocyte Growth Factor (HGF), at 20-50 ng/ml each, for the entire culturing period according to the method of Schwartz et al. (Schwartz RE, Reyes M, Koodie L, Jiang Y, Blackstad M, Lund T, Lenvik T,
Johnson S, Hu WS, Verfaillie CM. Multipotent adult progenitor cells from bone marrow differentiate into functional hepatocyte-like cells. J Clin Invest. 2002; 109 (10): 1291-302). Hepatocytes were also grown in serum free medium according to the method of Runge et al. (Runge D, Runge DM, Jager D,
Lubecki KA, Beer Stolz D, Karathanasis S, Kietzmann T, Strom SC,
Jungermann K, Fleig WE, Michalopoulos GK.Serum-free, long-term cultures of human hepatocytes: maintenance of cell morphology, transcription factors, and liver-specific functions. Biochem Biophys Res Commun. 2000; 269(1): 46-53).
In all of the above-mentioned hepatocytes culture conditions, cells are grown in the presence or absence of the retinoic acid antagonist AGN 194310 at concentrations ranging from 10° M to 107° M.
After a period of 3 weeks, cultures treated with 10° M antagonist were detached with 0.25% trypsin, split and replated at a 1:2 ratio. The cells were either immunostained as described below, or visualized with Giemsa staining. } Murine hepatocyte cultures supplemented with EGF and HGF were evaluated as primary cultures, or following first and second passages. First passage cultures were grown for 2 weeks, split 1:2 and immunostained 8 days later for the presence of albumin, as described below. Second passage cultures were similarly grown for 2 weeks, split 1:2, and grown for an a«ditional week, then split 1:4 and similarly immunostained 4 days later.
Histologic Characterization: i Hepatocytes and ex-vivo expanded cells were fixed in meethanol directly in their cell culture plates and each procedure performed by stanciard procedures as outlined below.
The cellular uptake of organic anions by culture hepatocytes commonly use as markers of hepatocyte functionality, was studied by indlocyanine green (ICG) dye uptake. ICG (Sigma, Jerusalem, Israel) was dissolved in DMEM yielding a final concentration of 1 mg/ml (Yamada T, Yoshikawva M, Kanda S,
Kato Y, Nakajima Y, Ishizaka S, Tsunoda Y. In vitro di fferentiation of : embryonic stem cells into hepatocyte-like cells identified by cellular uptake of indocyanine green. Stem Cells. 2002; 20(2): 146-54). Ter days cultured hepatocytes were washed twice with PBS and incubated with 4400 pl of the dye 1s for 15 minutes at 37 °C. Samples were then rinsed 3 times with PBS, and visualized by light microscopy..
Ex-vivo expanded cells and hepatocytes were stained with Giemsa stain, according to manufacturer’s instructions (Shandon, Pittsburg, P.A) for 4 minutes at room temperature, washed in buffer solution for 4 minutes and washed 3-4 times with rinse solution.
Immunocytochemistry
Hepatocytes were probed for expression of a-fetoprotein (AFP) using a rabbit polyclonal antibody raised against a recombinant protein of human origin that cross-reacts with AFP from mouse (H-140 Santa Cruz Technology, Santa
Cruz, CA), and albumin using a rabbit antiserum to mouse albumin (Cappel-ICN, Aurora, Ohio). Cells were fixed in methanol at —20 °C for 10 minutes, rinsed with PBS for 5 minutes, and permeabilized wath 0.1% triton-X (Sigma, Jerusalem Israel) in PBS for 5 minutes. The cells were then washed with Tris buffer saline (TBS) for 5 minutes and incubated with 1% bovine serum albumin (BSA) in PBS for 10 minutes. Endogenecous gperoxidases were inactivated by incubation with peroxidase block (Envision, Dak, Carpinteria,
CA) for 5 minutes, at room temperature. Cells were incubated wwith antibodies raised in rabbit against mouse albumin (at a dilution of 1:10); or against a-fetoprotein (at a dilution of 1:25) for 30 minutes. Samples were then visualized for peroxidase activity (via methods according to amanufacturer’s instructions using the Envision HRP-system (Dako, Carpinteria, CA), and counterstained with hematoxylin (Dako, Carpinteria, CA).
Experimental Results
Primary cultures derived from 3 weeks old mouse livers, grown in media in the absence of cytokines, were probed for the expression of hepatocyte-specific markers including early development markers like a-fetoprotein (which is specific for less differentiated progemnitor cells) and albumin which is a marker for mature hepatocytes, following 3 weeks in culture.
Cultured cells stained positively (red-brown precipitate) fox a-fetoprotein (Figure 8A), and for albumin (data not shown) indicating the presence of functional hepatocytes. Incubation of the cultures in the presence of the 10° M retinoic acid antagonist resulted in an increase in the fraction of cells that stained positively for fetoprotein as compared to control cultu res (Figure 8B).
This increase may signal the proliferation of early hepatocy-tes. Similarly, giemsa staining of the cultures revealed a large populatiora of oval cells (hepatocyte stem progenitor cells are defined as oval cells) in cultures treated with the retinoic acid antagonist (Figure 9B) while few were apparent in untreated control cultures (Figure 9A). ] 25 : Hepatocytes cultures grown in the presence of the antagonist and in the absence of cytokines for 3 weeks were trypsinized, split, and replated. The cells : reattached to the culture plate and revealed typical hepatocwytic morphology (Figure 9C), as opposed to previous data indicating a difficulty in growing primary hepatocytes for extended periods of time in culture, especially in the absence of cytokines (Wick M, Koebe HG, Schildberg FW. New ways in hepatocyte cultures: Cell immobilization technique ALTEX. 1997; 14(2):5 1-56; ) Hino H, Tateneo C, Sato H, Yamasaki C, Katayama S, Kohashi T, Aratani A,
Asahara T, Dohi K, Yoshizato K. A long-term culture of human hepatocytes which show a high growth potential and express their differentiated phenotypes.
Biochem Biophys Res Commun. 1999 Mar S5;256(1):184-91; Tatermo C,
Yoshizato K. Long-term cultivation of adult rat hepatocytes that undergo : multiple cell divisions and express normal parenchymal phenotypes. Am J
Pathol. 1996; 1 48(2): 383-92).
The supplementation of the culture media with growth factors in primary . hepatocyte cul tures treated with RAR antagonist revealed similar results to unsupplemente d cultures, in that supplemented cultures stained positively for the production of a-fetoprotein (Figure 10C), as compared to control cultures, supplemented wvith growth factors, but deprived of the RAR antagonist, -where no immunostaining was evident (Figure 10D). Background staining, as determined bys probing for albumin expression, was negligible in RAR antagonist treated (Figure 10A) and untreated, supplemented cultures (Figure 10B). Thus cu lture supplementation with growth factors alone is insufficment to expand a less-AAifferentiated cellular phenotype.
Similarly, first and second passages of growth factor-supplemented hepatocyte cultures were evaluated for their ability to persist in culture. In first passage growth factor-supplemented cultures both RAR antagonist treated (Figure 11B) a nd untreated control cultures (Figure 11A) revealed the presence of typical hepa tocytes, however only RAR treated cultures (Figure 11 C and D) revealed a large number of islets of oval cells, indicative of a hepatocytes stem a cell population . } Second passage growth factor-supplemented cultures showed a marked diminishment an the number of hepatocytes evident in control cultures (Figure 11E), as compared to RAR treated cultures (Figure 11F), indicative of a failure of growth factor supplementation alone to provide expanded and persistent hepatocytes in culture. Only RAR antagonist treatment enabled expansion and
Jong-term culture of hepatocyte populations.
EXAMPLE 3
RXR AND RA R+RXR ANTAGONISTS AND THEIR USE IN EZX-VIVO
CELL EXPANSION
Material and Experimental Methods
Synthesis of the RXR antagonist (2E, 4E, 67)-7-[3-propoxy-3,6,7,8- tetrahydro-5,5,8, 8-tetramethyl-2-naphthalene-2-yl[-3-methylocta-2, 4,6-trienoi c acid] (LGN 100754):
The synthesis of LGN100754 was based on (i) Canan-Koch et al. I.
Med. Chem. 39, 17, 3229-3234 [reaction scheme, page 3231; and (ki) Synthetic protocols from International Application No. PCT/US96/14876 (WO 97/ 12853) entitled Dimer-Selective RXR Modulators and Methods for Theix Use. All materials were purchased from Ligand Pharmaceuticals Inc.
Synthesis of 6-ethynyl-1,1,4,4-tetramethyl-7-prop ©oxy-1,2,3,4- tetrahydronaphtéhalene:
Phosphonas oxychloride (0.234 grams, 0.142 ml, 1.52 mmol) was added dropwise to dimethyl formamide (DMF) (4 ml) at room temperature under a nitrogen atmosphere. The solution was stirred for 30 minutes. The 1-(3-propoxy-5,6,7,8-tetrahydro-5,5,8,8,-tetramethylnaphthalen-2-y1) ethanone was added quickly (in one portion) to the orange solution, the reaction solution was heated to 60 °C and was stirred for 12 hours. The obtained dark brown solution was poured into ice water and the aqueous layer was adjusted to pH 7 . with solid sodium hydrogen carbonate. Ethyl acetate extraction afforded the crude product, the chioroenal (6-[1-hydroxy,2-chloro-ethenyl]-1,1,4,4- tetramethyl-7-propoxy-1,2,3,4-tetrahydronaphthalene), 0.128 grams, as an orange/brown oil. A solution of the crude chloroenal in dioxane: water (3:2; 5 ml) was added ®o a solution of NaOH (0.061 grams, 1.52 mmol) in dioxane:
H,0 (3:2; 20 ml), at 80 °C, and the reaction mixture was stirred for 2 hours, to yield an orange reaction solution. The reaction solution was cooled to room temperature, poured into brine and extracted with EtOAc. The organic phase was dried (MgSO4), filtered, and concentrated to afford an orange oil which was purified by radial chromatography (10:1 hexane:ethyl acetate) to give the product 6-ethynyl-1,1,4 4 -tetramethyl-7-propoxy-1,2,3,4-tetrahydronaphthalene (39 %) as a yellow oil ['"H-INMR (400MHz, CDCl;): d 7.38(s, 1H, Ar-H), 6.76(s,1H, Ar-H), 3.98 (t, J=6_6Hz, 2H, OCH3), 3.19 (s, TH, CH),1.83 (m, 2H,
CH,),1.66 (m, 2H, 2CH,),1.26 (s, 6H, 2CH3),1.23 (s, 6H, 2CH,), 0.93 (t, J=7.4
Hz, 3H, CHj)].
Synthesis of 3-(3-propoxy-5,6,7,8-tetrahydro-5,5,8,8- tetramethylnaphthalene-2-yl) propynenitrile:
Ethyl magnesium bromide (3.33 ml of a 1.0 M solution in THF, 3.32 mmol) was added dropwise to a room temperature solution of the acetylene 1s ether (6-ethynyl-1,1,4,4,-tetramethyl-7-propoxy-1,2,3,4-tetrahydronaphthalene) (0.450 grams, 1.66 mmol) in THF (10 ml). The solution was heated to reflux for 6 hours and then cooled to room temperature. Phenyl cyanate (0.40 grams, 0.50 ml, 3.33 mmol) was added (neat) to the reaction solution and the reflux was continued for additional 2 hours. The reaction solution was cooled to room temperature and quenched with a saturated ammonium chloride solution.
Aqueous workup followed by radial chromatography (20:1hexanes:EtOAc) afforded the product 3-(5,5,8,8-tetramethyl-3-propoxy-5,6,7,8- tetrahydronaphthalen-2-yl)-propynenitrile (80%) as a yellow solid; 'H-NMR (400MHz, CDCls): d 7.44 (s, 1H, Ar-H), 6.78 (s, 1H, Ar-H), 3.97 (t, J=6.5Hz, 2H, OCH,), 1.83 (m, 2H, CH,), 1.67 (m, 2H, 2CH,), 1.27 (s, 6H, 2CH3), 1.24 (s, 6H, 2CHs), 1.03 (t, J=7.3Hz, 3H, CH).
Synthesis of 3-(3-propoxy-5,5,8,8,-tetramethyl-5,6,7,8- tetrahydro-naphthalene-2-yl) but-2-enenitrile:
A flame dried flask was charged with a suspension of copper(I) iodide (0.057 grams, 0.298 mmol) in THF (5 ml) and the mixture was stirred at 0 °C under nitrogen atmosphere. Methyl lithium (0.43 ml of a 1.4 M solution in ether, 0.596 mmol) was added dropwise to give a colorless solution. The solution was cooled to -78 °C and afforded a yellow/brown color. The . acetylene nitrile 3-(5,5,8,8-tetramethyl-3-propoxy-5,6,7,8- tetrahydronaphthalene-2-yl)propionitrile (0.040 grams, 0.135 mmol) in THF (3.0 ml) was added dropwise and the solution vwvas stirred at -78 °C for 45 minutes and then quenched with methanol (5 ml). An aqueous workup afforded the cis-alkene nitrile 3-(3-propoxy-5,5,8,8,-tetramethyl-5,6,7,8- tetrahydro-naphthalene-2-yl)but-2-enenitrile (97 2%) as a yellow oil; "H-NMR (400MHz, CDCl): d 7.19 (s, 1H, Ar-H), 6.78 (s, 1H, Ar-H), 5.35 (s, 1H, olefinic), 3.92 (t, J=6.4Hz, 2H, OCH,), 2.27 (s, 3H, CH3), 1.79 (m, 2H, CH), 1.67 (s, 2H, 2CH,), 1.28 (s, 6H, 2CH3), 1.27 (s, 6H, 2CHs), 1.02 (t, J=7.4 Hz, ‘3H, CH).
Synthesis of (2E, 4E, 6Z)-7-3[-propo-xy-5,6,7,8-tetrahydro-5,5,8,8- tetramethyl-2-naphthalene-2-yl]-3-methylocta-2,4,6-trienoic acid]:
A round-bottomed flask equipped with N, bubbler, septa, and a stir bar was charged with a solution of 3-(3 -propoxy-5,5,8,8,-tetramethyl- 5,6,7,8-tetrahydro-naphthalene—2-yl)-but-2-enenitwrile adduct in hexanes (5 ml) and toluene (5ml), and was then cooled to _78 °C. DIBAL(3.71mlofal.0M solution in toluene, 5.6 mmol) was added dropw ise via syringe to the solution which was then stirred for 1.5 hour at -78 °C, quenched with aqueous sodium potassium tartarate solution (10 ml) and warmed. to room temperature over 30 minutes. The aqueous layer was acidified (1.0 M HCI to pH=4) and extracted with EtOAc (3 x 10 ml). The combined organic extracts were washed with water and brine, dried (sodium sulfate), filtered, and concentrated to give the cis-alkenyl, cis-3-(3-propoxy-5,5,8,8-tetramethyl-5,6,7,8-tetrahydro- : naphthalene-2-yl)but-2-enal as a yellow oil; "H-NMR (400 MHz, CDCl;): d 9.36 (d, J=8.4 Hz, 1H, CHO), 6.99 (s, 1H, Ar-H), 6.79 (s, 1H, Ar-H), 6.09 (s,
J=8.4 Hz, 1H, olefinic), 3.90 (t, J=6.5 Hz, 2H, OCH,),2.29 (s, 3H, CH3),1.76
(m, 2H, CHy), 1.68 (s, 2H, 2CHy), 1.3 (s, 6H, 2CH;), 1.24 (s, 6H, 2«CH3;), 1.00 (t,
J=7.4 H=, 3H, CH,).
A flame-dried round-bottomed flask equipped with a nitrogen bubbler, septa, and a stir bar was then charged with a solution of diethyl 3-ethoxzycarbonyl-2-methyl-prop-2-enyl phosphonate (0.417 grams, 1.58 mmol, 0.39 ml) in THF (2.0 ml) and 1,3-Dimethyl-3,4,5,6-tetrahydro-2(1H)- pyrimid.inone (DMPU, 0.7 ml). The solution was cooled to —78 °C, and n-butyl lithium (0.96 mi of a 1.5 M solution in hexanes, 1.44 mmo 1) was added drop-wiise via a syringe. The reaction mixture was warmed to 0 “C and stirred for 15 minutes. The resulting solution was then cooled to ~78 °C and cis-3-(3-propoxy-5,5,8,8-tetramethyl-5,6,7,8-tetrahydro-naphthaleme-2-yl)but-2- enal (1_31 mmol) was added dropwise via cannula. The solution was warmed to ambien t temperature. After stirring for 1.5 hours, the reaction was quenched with w ater (15 ml), and the aqueous layer was extracted with EtOAc (3 x 10 ml). The combined organic layers were washed with aqueous CuS0Q,, water, and bri ne, dried under sodium sulfate, filtered, and concentrated go give a crude ester (2E, 4E, 6Z)-7-3[-propoxy-5,6,7,8-tetrahydro 5,5,8,8—tetramethyl-2- naphthalene-2-yl]-3-methyl-octa-2,4,6-trienoic acid ethyl ester. The crude ester was hy-drolyzed with KOH (excess) in methanol (7 ml) at reflux temperature and quenchaed with 1 M HCI (5 ml). The solution was concentrated, diluted with water (10 ml) and the aqueous layer was extracted with EtOAc (3 x 15 ml). The combined organic layers were washed with water and brine, dried over NaSO,, filtered, concentrated, purified by radial chromatography followed by preparative silica gel TLC to give (2E, 4E, 6Z)-7-3[-propoxy-5,6.7,8-tetrahydro- 5,5,8,8-tetramethyl-2-naphthalene-2-yl}-3-methylocta-2,4,6-trienoic acid] as a pale yellow solid; m.p. 177-179 °C; "H-NMR (400 MHz, CDC15): d 6.95 (s, 1H, : Ar-H), 6.79 (s, 1H, Ar-H), 6.62 (dd, J=15.3, 11.0Hz, 1H, olefinic), 6.22 (appp br d, 2H, 2* olefinic), 5.76 (s, 1H, olefinic), 3.89 (t, J=6.5 Hz, 2H, OCH,), 2.19 (s, 3H, CH), 2.13 (s, 3H, 2CH3, 1.77(m, 2H, CH,), 1.68 (s, 4H, 2CHl,), 1.30 (s, 6H,
2CH,), 1.23 (s, 6H, 2CH,), 1.01 (t, J=7.4Hz, 3H, CH;).
Synthesis of the RAR+RXR antagonist 4-[5H-2,3-(2,5-imethyl-2,5-
Hexano) 5-Methyl-8-nitrodibenzo [b,e] [1,4] diazepin-11-yl) _Benzoic acid ) [designated FIX 531]:
Synthesis of the RAR+RXR antagonist HX531 was accomplished based on the procedure described by Masyuki Ebisawa et al., Chem. Pharm. Bull, 47(12): 1778 -1786 (1999).
Synthesis of 2,5-Dimethyl-2,5-hexanediol:
Solutions of hydrogen peroxide (1.05 moles) and ferrous sulfate (1 mole and 1 mole of sulfuric acid) were added simultaneously and equivalently to an aqueous solution of t-butyl alcohol (285 ml or 3 moles in 800 ml of water containing 23 ml of sulfuric acid) at 30 °C. A 36 % yield of semm-solid product possessing a camphor-like odor was thereby isolated. The 2,5-dimethyl -2,5-hexanediol product was purified by drying and recrystallization (EtOAc) (melting point (mp): 85-87 °C).
Synthesis of 2,5-dichloro-2,5-dimethylhexane:
The synthesis was accomplished as previously described. [Mayr, H., et al., Chem. Ber. 124: 203, 1999]. 2,5-Dimethyl-2,5-hexanediok (73.1 grams, 0.500 mol) was stirred with 37 % aqueous HCl (250 ml) for 1 hour. The initially homogeneous mixture precipitated to yield a crystalline product. The product was extracted with 600 ml of petroleum ether and dried with CaCl,.
Evaporation of the solvent yielded 81.9 grams (89 %) of an
NMR-spectroscopically pure solid, which was recrystallized fwom petroleum ether (mp: 6 8-68.5 °C) as 2,5-dichloro-2,5-dimethylhexane.
Synthesis of 6-bromo-1,2,3,4-tetraahydro-1,1,4,4- tetramethylrtaphthalene: . A 200 ml round-bottomed flask equipped with a stir bar and a reflux condenser was charged with a solution of bromobenzene (109 mrmol, 17 ml) and 2,5-dichloro-2,5-dimethyl hexane (10 grams, 54.6 mmol) in duchloromethane (30 ml). Aluminum chloride (1.45 grams, 10.9 mmol) was addedl to the solution slowly, until spontaneous reflux subsides. After stirring for 10-15 minutes at room temperature, the reaction was poured into ice water (30 ml) and the layers } were separated. The aqueous layer was extracted with EtOAc (5 x 20 mi). The ) combined organic layer was washed with water and brine, dried over sodium s sulfate, filtered, and concentrated, to yield a 6-bromo-1,2,3,4-tetrahydro- 1,1,4,4-tetramethylnaphthalene product.
A mixture of 6-bromo-1,2,3 4-tetrahydro-1,1,4,4-tetramethylnaphthalene (30 grams, 110 mmol), potassium carbonate (56.1 grams, 41 mmol) and copper . iodide (4.53 grams) in o-xylene (300 ml) was heated at 150 °C for 14 hours.
After removal of the solvent, the residue was purified by silica gel column chromatography (EtOAc:n-hexane 1:100) to yield the product 2-nitro -1-amino-[1,2,3,4-tetrahydro-1,1,4, 4-tetramethylnaphthalene]-benzene as red plates (n-hexane) (36.09 grams, 82 % yield of title product, mp: 118 °C].
A solution of 2-nitro-1-amino-[1,2,3.4-tetrahydro-1,1,4,4- 1s tetramethylnaphthalene]-benzene (500 mg, 1.54 mmol) in DMF (10 ml) was added to a suspension of NaOH (60 %, 92 mg, 2.31 mmol) in DMF (1 ml) and the mixture was stirred for 30 minutes, followed by addition of methyl iodide (0.5 ml) and additional stirring for 1 hour. After removal of the solvent, the residue was taken up in water, and was extracted with dichloromethane. The organic layer was washed with water and brine, and was dried over MgSO,.
Removal of the solvent umder vacuum gave a crude product. 2-nitro-1-methylamino-[1,2,3 ,4-tetrahydro-1,1,4,4-tetramethyl-naphthalenejben zene (543 mg). 2-Nitro-1-methylamino-[1,2,3,4-tetrahydro-1,1,4 4-tetramethyl-naphthale nelbenzene (540 mg, 1.53 mmol) was dissolved in 20 ml of ethanol, and was hydrogenated over 10 % ethyl alcohol (55 mg) for 1 hour. After filtration and } removal of the solvent, the residue was chromatographed on silica gel (EtOAc:n-hexane 1:8) to give 2-amino-1-methylamino-[1,2,3 4-tetrahydro- 1,1,4,4-tetramethyl-naphthalene]benzene as the product.
Terephthalic acid monomethyl ester chloride (381 mg, 1.91 mmol) was added to a solution of 2-amino-1-methylamino-[1,2,3 4-tetrahydro- 1,1,4,4-tetramethyl-naphthalene]benzene (420 mg. 1.3 mmol) in benzene (10 . ml) and pyridine (2 ml). The mixture was stirred for 4 hours, then poured into 2N hydrochloric acid, and extracted with EtOAc. The organic layer was dried and was then purified over silica-gel (EtOAc:n-hexane 1:8) to give the product 2-[amido-4-benzoic acid methyl-ester]-1-methyl-amino{1,2,3 /A-tetrahydro- 1,1,4,4-tetramethyl-naphthalen e]-Benzene (631 mg).
A solution of 2-[amido-4-benzoixc acid methyl-ester]-1- methyl-amino[1,2,3,4-tetrahydro-1,1,4,4-tetrameth_yl-naphthalene]-Benzene (630 mg, 1.30 mmol) in dichloromethane was added to polyphosphoric acid (6.0 grams) and the mixture was heated at 110 °C for 1 8 hours. After cooling, water was added to the reaction and the product was extracted with dichloromethane.
The organic layer was washed with brine, dried over magnesium sulfate, and evaporated. The residue was purified by silica:-gel column chromatography (EtOAc:n-hexane 1:6) to yield the product 2-[smamido-4-benzoic acid methyl ester]- 1-methylaminof 1,2,3,4-tetrahydro1,1,4,4-tetramethylnaphthalene]4-nitrob enzene (104 grams).
KNO; (73 mg, 0.72 mmol) was added to a solution of 2-[amido-4-benzoic acid methyl ester]-1-mewthylamino(1,2,3,4-tetrahydrol, 1,4,4-tetramethylnaphthalene]4-nitrobenzene (200 mg, 0.44 mmol) in sulfuric acid (12 ml) at 0 °C. After 2.5 hours, the mixture was poured into ice water and extracted with dichloromethane. The organic layer was washed successively with IN NaHCO; water and brine, and dried over MgSO,. After evaporation, the residue was purified by silica gel column chromatography (EtOAc:n-hexane . 1:8) to give methyl 4-(5H-2,3-(2,5-dimethyl-2,5-hexano)- 5-methyl-8-nitrodibenzo [b,e] [1,4] diazepin-11-y1) benzoate (100 mg, 45.5 %) and the product recovered (84 mg). This compou nd was hydrolyzed under basic conditions (2N NaOH/EtOH) as follows:
Synthesis of 4-(SH-2,3-(2,5-dimethyl-2,5-hexano)-5-methyl- ’ 8-nitrodibenzo [b,e] [1,4] diazepin-11-yl) benzoic acid: . A solution of (5H-2,3-2,5-dimethyl-2,5-hexano)-5-methyl-8- nitrobenzo[b,e][1,4]diazepin-11-yllbenzoic acid methyl ester (84 mg) in ethanol (4 ml) and 2N NaOH (2 ml) was stirred at room temperature for 2 hours. The mixture was poured into 2N hydrochloric acid, and extracted with dichloromethane. The organic layer was washed with brine, and dried over magnesium sulfate. After evaporation, the crude product was purified by silica gel column chromatography (dichloromethane:methanol 20:1, then 8:1) to give the product 4-(5H-2,3-(2,5-dimethyl-2,5-hexano)-5-methyl-8-nitrodibenzo [b,e] [1,4] diazepin-11-yl) benzoic acid, or HX531.
RXR, RAR and RAR+RXR aniagonists supplementation of ex-vivo hematopoietic stem/progenitor cell cultures:
Cultures were prepared and maintained as described above. RXR, RAR, or RAR+RXR antagonists were added to some cultures at concentrations ranging from 10" M to 10M (100 pM to 107 M] concentrations corresponding to diluting concentrations of 1550 pg/l to 0.155ug/1]. The antagonist was added for a predetermined, limited time period, for up to three weeks or continuously during the entire culture period.
All other procedures including mononuclear cell fraction collection and purification, purification of CD34" cells from mononuclear cell fractions, ex-vivo expansion of CD34" populations, morphological assessment, surface antigen analysis, determination of CID34 and other hematopoietic marker expression and cell population calculations were carried out as described in the experimental methods section of Example 1 above.
Experimental Results
Comparative effects of RAR, RXR and RAR+RXR antagonists and a combination of RAR and RXR antagonists on the ex viwo expansion of stem . and progenitor cells in culture:
CD34" cell enriched cultures were initiated in the presence of a combination of 4 cytokines (TPO, FLT3, IL-6 and IL-3), with and without different concentrations of the following antagonists: (i) a retinoic acid receptor (RAR) antagonist AGN 194310, (ii) a retinoic X receptor (RXR) antagonist
LGD 100754 and (iii) a combination of the RAR antagomist AGN 194310 and the RXR antagonist LGD 100754. Three and five weeks after the initial seeding, the percentage of cells bearing the CD34" marker (considered to be mostly committed progenitor cells), as well as the percentage of cells bearing the markers CD34"/CD38 and CD34'Lin” (considered to represent the stem and early progenitor compartment) were ascertained by FACS analysis.
The data obtained from cell population counts, CFU counts and FACS analyses are illustrated in Figures 12a-b and 13a-e. The results show that while the RXR antagonist has no activity and the RAR antagonist exerts moderate activity when supplemented to the culture media at a concentration of 107M and along with the cytokine IL-3 (cell-differentiation accelerator), treatment with the combination of RAR and RXR antagonists resulted in substantially higher levels of CFU, CD34" cells, CD34"/38" cells, and CD34"/Lin" cells, as compared with the control (cytokines only), the RAR antagonist treatment, and the RXR antagonist treatment. Clearly, the combination of RAR and RXR antagonists exerts a synergistic effect on the ex vivo expansion of stem/progenitor cells.
In an additional experiment, CD34" cell enriched cultures were initiated } in the presence of a combination of 4 cytokines (TPO, FLT3, IL-6 and IL-3), with and without the RAR+RXR antagonist HX-531 (&.¢., antagonist to both retinoic acid and retinoic X receptors) (10° M; MW=483). The levels of CFU and CD34" cells were determined 3, 7, 9 and 11 weeks after the initial seeding.
The results of this experiment are summarized in Table 4 below.
Table 4 - RAR+RXR ANTAGONIST
I I vl
BE I Ep (weeks) CFU (x10%) | CD34" (x10%)| CFU (x10°) CD34" (x10% sw [ewe | es
IEA IA LI LC I
ILE EL I CCC I
These results indicate that the RAR+RXR antagonist preferably enables marked proliferation, yet limited differentiation of the stem cell compartment, thus directly impact the high fold expansion of stem/progenitor cells during short- and long-term culture period.
EXAMPLE 4
Synthesis of the Vitamin D receptor (VDR) antagonist ¥ alpha, 25-(OH) 2D3-26,23-lactone:
Synthesis of the four diastereoisomers of 1 alpha, 25-(OH) 2D3-26,23-lactone can be accomplished as described in Ishizuka, S. et. al,
Archives of Biochemistry and Biophysics 242: 82,1985, or according to the following procedure:
Synthesis of Methyl 4-lodo-2-Methyl-Butyrate:
To a suspension of lithium in 2 ml ether (dry) under stream of nitrogen, a solution of phenyl bromide in 3 ml ether was added dropwise. The reaction mixture was heated until complete dissolution of the lithium was achieved. A solution of methylene iodide in ether was prepared under a stream of argon and was cooled to - 78 °C. The phenyl lithium solution was added dropwise to this solution by a syringe during 0.5 hour, and a solution of methyl
(R)-(+)-3-bromo-2-methylpropionate in ether (5 ml) was then added thereto.
The reaction mixture was stirred ovemight at 25 °C. DMSO (7 ml) was then added and the ether was evaporated. The reaction mixture was stirred overnight at 100 °C.
Synthesis of (I alpha, 3 Beta, SE, JE, 20R, 1 ’E)-1,3-bis-(tert-butyldimethylsilyloxy)-20-Methyl(2-Methyl, 1 *.Heptenylate)- 9,10-secopregna-5,7,10,(19)-triene:
To a suspension of lithium metal in 2 ml of dry ether, a solution of phenyl bromide in 3 ml of dry ether was added dropwise, under nitrogen atmosphere. An exothermic reactiom was observed during the dissolution of the lithium metal. The reaction mixture was heated until complete dissolution of the lithium metal was achieved.
Triphenylphosphine 99% (1-447 grams, 5.52 mmol) and DMSO were added to the reaction solution of methyl 4-iodo-2-methyl-butyrate described above and the resulting mixture wass heated to 100 °C for 18 hours. The mixture was then cooled to -30 °C under mitrogen atmosphere, and the phenyl lithium solution in ether was added thereto.
This reaction mixture was stirred at 0 °C for 1 hour and thereafter a hexane solution of the aldehyde CLP-8 -
Beta,SE,7E,20R,1°E)-1,3-bis-(tert-butyldimethylsilyloxy)-9,1 0-secopregna-5,7,1 0,(19)-triene-aldehyde - was added. The obtained mixture was stirred at 100 °C overnight. The ether and the hexane were thereafter distilled, the reaction mixture was cooled to 60 °C and 50 ml ethyl acetate in 75 ml water were added thereto. The Organic layer was separated, washed with 25 ml water and brine ; 25 and dried over sodium sulfate. The organic solvent was evaporated under reduced pressure and the residue w-as dried under high vacuum and was purified ) on silica gel column (60 grams) with a mixture of hexane-EtOAc (98:2) as an eluent, to obtain 60 mg of the product (1 alpha,3 Beta,5E,7E,20R,1°E)-1,3-bis- (tert-butyldimethylsilyloxy)-20-(2-amethyl, 1 heptenylate)-9,1 0-secopregna-5,7,1
0,(19)-triene.
Synthesis of (I alpha, 3 beta, SE, 7E, 20R, I’E)-1,3-bis-(tert- } butyldimethylsilyloxy)-20-2-mmethyl-2-hydroxy-1’heptenoic acid)-9,10- . secopregna-5,7,10,(19)-triene : (1 alpha, 3 Beta, SE, 7E, 20R, 1’E)-1,3-bis-(tert-butyldimethylsilyloxy)- 20-(2-methyl-1-heptenylate)-9,10-secopregna-5, 7, 10, (19)-triene (60 mg) was dissolved in 3 ml THF and the solution was cooled to -78 °C under a stream of argon. LiN(iPr)2 was added t-o the reaction mixture, so as to obtain the lithium derivative, which was further reacted with oxygen for 1 hour at -78 °C.
Triphenylphosphine was then added and the reaction mixture was stirred for 30 minutes. The resulting reaction mixture was then evaporated under vacuum. A solution of KOH in methanol was added to the residue and the reaction mixture was heated to 60 °C for 2.5 hours and was thereafter diluted with 0.5 ml IN
HC], and evaporated under vacuum. The residue was dissolved in chloroform and the product was purified on silica gel plate (20 x 20), using a mixture of 97:3 hexane-cthyl acetate (2 times) as the cluent., to obtain 6.3 mg of the product as fraction 2 (Rf = 0.81).
The obtained product was then treated with a solution of 15.2 mg iodine in 2 ml methylene chloride, im the presence of pyridine (12 mg) and the reaction mixture was evaporated under vacuum and thereafter under high vacuum. The residue was dissolved with THF and n-Bu;SnH (29.1 mg) was added thereto.
The reaction mixture was stirred at room temperature for 4 hours and was thereafter evaporated under vacuum.
The residue was treate d with catalytic amounts of HCI in methanol at 50 . 25 °C for 5 hours. The reaction mixture was evaporated under vacuum and the residue was purified on silica gel TLC plate (20 x 20) using a mixture of 95:5 : chloroform-methanol as the eluent, to obtain 2.64 mg of the desired product 9,10-secocholesta-5,7,10(19)~trien-26-oic acid, 1,3,23,25-tetrahydroxy- gamma-lactone or (23S, 25R)-lalpha,25-DihydroxyvitaminD3-26,23-lactone, as fraction 1 (Rf = 0.4); FAB-MS: Calc. 426.60, Found 426.88. ’ EXAMPLE 5 . EFFECT OF NICOTINAMIDE ON EX-VIVO EXAINSION OF
HEMATOPOIETIC STEM/PROGENITOR CELLS
Nicotinamide supplementation of ex-vivo hematopoietic stem/progenitor cell cultures: : Cultures were prepared and maintained as described above.
Nicotinamide was added to cell cultures at concentrations of 1, 5 or 10 mM for wp to three weeks culture period. All other procedures including mononuclear cell fraction collection and purification, purification of CD34" cells from mmononuclear cell fractions, ex-vivo expansion of sterm/progenitor cell populations, morphological assessment, surface antigen analy sis, determination of CD34, CD38, Lin and other hematopoietic marker expression and cell population calculations were carried out as described in the experimental methods section of Example 1 above.
Experimental Results
Effects of nicotinamide on the ex-vivo expansion of stem and progenitor hematopoietic cells:
Hematopoietic CD34+ cell cultures were initiated in the presence of a combination of 5 cytokines, SCF, TPO, FLt3, IL-6 and IL-3, with or without different concentrations of nicotinamide. Following three weeks incubation period, the CD34+ cells were re-selected from culture by affinity re-purification ” method and were enumerated. The results, presented in Figure 14, show that . cultures supplemented with 1 and 5 mM nicotinamide yielded 99 x 10% and 180 x 10% CD34+ cells per ml, respectively, as compared with only 35 x 10° CD34+ cells per ml in the non-treated (cytokines only) control. In addition, the we-selected CD34+ cell fraction was FACS analyzed for stem/progenitor cell markers. The results, presented in Figures 15-17 and 18a-b, show substantial increases in the proportion of CD34+/CD38-, CD34+/Lin- and ’ CD34+/(HLA-DR38-) cells in cultures treated with nicotinamide. Figure 15 x shows that cultures supplemented with 1 and 5 mM nicotinamide resulted in 1.7 and 51.7 fold increase, respectively, in CD34+/CID38- cells density, as compared with the untreated (cytokines only) control. Figure 16 shows that cultures supplemented with 1 and 5 mM nicotinamide resulted in 10.5 and 205.5 fold increase, respectively, in CD34+/Lin- cells density, as compared with the untreated (cytokines only) control. Figure 17 shows that cultures supplemented with 5 mM nicotinamide resulted in 11.5 fold increase £n CD34+/(HLA-DR38-) cells density, as compared with the untreated (cytokines only) control. Hence, nicotinamide was found to be a very effective agen€& for promoting ex vivo expansion of stem and progenitor cells.
In an additional experiment, cultures were treated with 5 and 10 mM nicotinamide. Table 5 below presents the obtained results, which further demonstrate the powerful effect of nicotinamide on ex-vivo expansion of stem and early progenitor cells.
Table 5 1 _total cells | total cells
EE EE
Niotmamide Gm) | 9] en
Nicotinamide (l0mM) | 467 | 168 i” 1 — :
It is appreciated that certain features of the iravention, which are, for clanty, described in the context of separate embodimen ts, may also be provided in combination in a single embodiment. Conversely, various features of the invention, which are, for brevity, described in thse context of a single embodiment, may also be provided separately or in any suitable : subcombination. :
. Although the invention has been described in conjunction with specific embodiments thereof, it is evident that many alternatives, modificatioms and variations will be apparent to those skilled in the art.
Accordingly, it is intended to embrace all such alternatives, modifications and variations that fall withuin the spirit and broad scope of the appended claims.
All publications, patents and patent applications mentioned in this specification are herein incorporated in their entirety by reference into the specification, to the same extent as if each individual publicatiom, patent and patent application was specifically and individually indicated to be incorporated herein by reference.
In addition, citation or identification of any reference in this application shall rot be construed as an admission that such reference is available as prior art to the present invention.
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Claims (46)
1. A method of expanding a population of stem cells ex-vivo, while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo, the method comprising: culturing said stem cells ex-vivo under conditions allowing for cell proliferation and, at €he same time, culturing said cells under conditions selected from the group consisting of: conditions reducing expre ssion and/or activity of CD38 in said stem cells, conditions reducing capacity of said stem cells in responding to retinoic acid, retinoids and/or Vitamin D in said stem cells, conditions reducing capacity of said stem cells in responding to signaling pathways involving the retinoic acid receptor, the retinoid X receptor and/or the Vitamin D receptor in sai d mononuclear cells; and conditions wherein said stem cells are cultured in the presence of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite; thereby expanding the population of stem cells while at the same time, substantially inhibiting differentiation of the stem cells ex-vivo.
2. The method of claim 1, wherein said stem cells are selected from the group consisting of: embryonic stem cells, adult stem cells or hematopoietic stem cells.
3. The method of any of claim 1, wherein said stem cells are derived from a source selected from the group consisting of: bone marrow, peripheral blood and neonatal umbilical cord blood.
4. The method of claim 3, wherein said stem cells are mixed with committed «ells.
5. The method of claim 3, wherein said stem cells are enriched for hematopoietic CD34" cells.
6. The method of claims 5, wherein said hematopoietic cells are characterized by an , AMENDED SHEEET 11.01.2006 absence, or significantly” diminished expression of cell surface antigens CD3, CD6L, CDI9, CD33, CD14, CD15 or CDA.
7. The method of ¢ laim 1, wherein providing the stem cells with said conditions fox ex-vivo cell proliferation comprises providing the cells with nutrients and with cytokines.
8. The method of cBaim 7, wherein said cytokines are early acting cytokines or late acting cytokines.
9. The method of claim 8, wherein said early acting cytokines are selected from the group consisting of: stem cell factor, FLT3 ligand, interleukin-1, interleukin-2, inter-leukin-3, interleukin-6, interleukir-10, interleukin-12, tumor necrosis factor-a. and thrombopo®etin and wherein said late acting cytokines are selected from the group consisting of: granulocyte colony stimulating factor, granulocyte/macrophage colony stimulating factor, erythropoietin, FGF, EGF, NGF, VEGF, LIF, Hepatocyte growth factor and macrophage colony stimulating factor.
10. The method of cl aim 1, wherein providing the stem cells with ex-vivo culture conditions for reducing said expression and/or said activity of CD38 is by providing the cells with an agent that downregulates CD3& expression.
11. The method of claim 10, wherein said agent that downregulates CD38 expr ession is selected from the group consisting of: a retinoic acid receptor antagonist, a retinoid X receptor antagonist and a Vitamin D receptor antagonist; an antagonist for reducirg a capacity of said stem cells in responding to retinoic acid, retinoid and/or Vitamin D; a polynucleotide. AMENDED SHEET 1 1.01.2006
12. The method of claim 1 1, wherein said polynucleotide encodes an anti CD38, an anti retinoic acid receptor, an anti retinoid X receptor «or an anti Vitamin D receptor intracellular antibody, or encodes an anti CD38, an anti retinoic acid receptor, an anti retinoid X receptor «<r an anti Vitamin D receptor antibody; is a small interfering polynucleotide molecule directed to cause intracellular CD38, retinoic acid receptor, retinoid X receptor or Vitamin D receptor mRNA degradation.
13. The method of claim 12, wherein said small interfering polynucleotide molecule is selected from the group consisting of: an RNAi molecule, an anti-sense molecule, a ribozyme molecule and a DNAzyme molecule.
14. The method of claim 1, wherein providing the stem cells with ex-vivo culture <onditions for reducing said expression and/or said activity of CD38 is by providing the cells with an agent that inhibits CD38 activity.
15. The method of claim 14, wherein said agent that inhibits CD38 activity is nicotinamide, a nicotinamide analog, a nicotimamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite.
16. The method of claim 15, wherein said nicotinamide analog is selected from the group consisting of: benzamide, nicotinethioamide, nicotinic acid and a-amino-3-indolepropionic acid.
17. The method of claim 1, wherein reducing said capacity of the stem cells in responding to retinoic acid or retinoids is reversible.
18. The method of claim 1, wherein reducing said capacity of the stem cells in responding to retinoic acid, retinoids or Vitamin D is by ex-vivo culturing the stem cells in the presence of an effective amount of at least one retinoic acid receptor antagonist, at least one retinoid X receptor antagonist and/or at least one Vitamin D receptor antagonist, optionally for a time peri od of 0.1- 50 % of an entire ex-vivo culturing period of the stem cells. AMENDED SHEET 11.01.2006
19. The method of claim 18, wherein said restinoic acid receptor antagonist is selected from the group consisting of: AGN 194310; AGN 193109; 3—(4-Methoxy-phenylsulfanyl)-3-methyl-butyric acid; 6-Methoxy- 2,2-dimethvl-thiochroman-4-one,2,2-Dimethyl-4- oxo-thiochroman-6-yltrifluoromethane-sulfo- nate; Ethyl 4-((2,2 dimethyl-4-oxo-thiochroman-6-yl)ethynyl)-benzoate; Ethyl 4-((2,2-dimethy 1- 4-triflouromethanensulfonyloxy -(2H)- thiochromen-6-yl)ethynyl)-benzoate(41); Thiochromen-6- yl]-ethynyl]-benzoate(yl); (p-[(E)-2-[3'4-Dihydro-4,4'-dimethyl-7'-(heptyloxy)-2'H-1 -benzothio- pyran-6'yl] propenyl] benzoic acid 1'l'-dioxide; 2E,4E,6E-[7-(3,5-Di-t-butyl-4-n-butoxyphenyl)- 3-methyl]-octa-2,4,6-trienoic acid; 2E,4E,6E-[ 7-(3,5-Di-t-butyl-4-n-propoxyphenyl)-3-methyl]- octa-2,4,6-trienoic acid; 2E 4E,6E-[7-(3,5-Di-t-butyl-4-n-pentoxyphenyl)-3-methyl]-octa-2,4,6- trienoic acid; 2E,4E 6E-[7-(3,5-Di-t-butyl-4-n-hexoxyphenyl)-3-methyl]-octa-2,4,6-trienoic acid; 2E,4E,6E-[7-(3,5-Di-t-butyl-4-n-heptoxyphenyl)-3-methyl]-octa-2,4,6-trienoic acid; 2E,4E,6E-[7- (3,5-Di-t-butyl-4-n-octoxyphenyl)-3-methyl]-octa-2,4,6-trienoic acid; (2E,4E,6E)-7-[3-t-butyl-5- (1-phenyl-vinyl)-phenyl]-3-methyl-octa-2,4,6-triemoic acid; 2E 4E,6E-[7-(3,5-Di-t-butyl-4-{[4,5- .sup.3 H.sub.2]-n-pentoxy} phenyl)-3-methyl]-octa-2,4,6-trienoic acid; (2E,4E)-(1RS,2RS)-5-[2- (3,5-di-tert.butyl-2-ethoxy-phenyl)-cyclopropyl]-3-methyl-penta-2,4-dienoic acid ethyl ester; (2E,4E)-(1RS,2RS)-5-[2-(3,5-di-tert.butyl-2-ethoxy-phenyl)-cyclopropyl]-3-methyl-penta-2,4- dienoic acid; (2E,4E)-(1RS,2RS) -5-[2-(3, 5-di-tert.butyl-2-butoxy-phenyl)-cyclopropyl]-3- methyl-penta-2,4-dienoic acid; (2E,4E,6Z)-7-[ 3,5-di-tert.butyl-2-ethoxyphenyl]3-methyl-2,4,6- octatrienoic acid; (2E,4E,6Z)-7-[3,5-di-tert.buty1-2-butyloxyphenyl]-3-methyl-2,4,6-octatrienoic acid; 4-(5,6,7,8-tetrahydro-5,5,8,8-tetramethy~]-2-naphthalene-carboxamido) benzoic acid; (2E,4E)-3-methyl-5-[(1 S,25)-2-(5,5,8,8-tetrameth yl-5,6,7,8-tetrahydro-naphthalen-2-yl)-cyclo- propyl]-penta-2,4-dienoic acid; p-[(E)-2-[3 ',4'-Dihydro-4',4"-dimethyl-7"-(heptyloxy)-2'H-1- benzothiopyran-6'-yl] propenyl]benzoic acid; 1',1' -dioxide, 4-(7,7,10,10-Tetramethyl-1-pyridin-3- ylmethyl-4,5,7,8,9,10-hexahydro-1H-naphto[2,3-g]indol-3-yl)-benzoic acid; (2E,4E,6Z)-7-[3,5- di-tert.butyl-2-methoxyphenyl]-3-methyl-2,4,6-oc tatrienoic acid; (2E4E,6Z)-7-[3,5-di-tert.butyl- 2-ethoxyphenyl]-3-methyl-2,4,6-octatrienoic acids (2E,4E,6Z)-7-[3,5-di-tert.butyl-2-hexyloxyphe- nyl]-3-methyl-2,4,6-octatrienoic acid; (2E,4E,67)-7-[3,5-di-tert.butyl-2-octyloxyphenyl]-3-me- thyl-2,4,6-octatrienoic acid; and (2E,4E)-(1RS 2RS)-5-[2-(3,5-di-tert-butyl-2-butoxy-phenyl)- cyclopropyl]-3-methyl-penta-2,4-dienoic acid, (2E,4E,6Z)-7-(3-n-propoxy-5,6,7,8-tetrahydro-
AMENDED SHEET 11.01.2006
5,5,8,8-tetramethylnaphthalene-2-yl)-3-methylocta-2,4 ,6-trienoic acid, and 4-(5H-2,3(2,5 dime- thyl-2,5-hexano)-5-n-propyldibenzo[b,e][1,4]diazepin—11-yl)benzoic acid, 4-(5SH-2,3-(2,5-dime- thyl-2,5-hexano)-Smethyl-8-nitrodibenzo[b,e][1,4]diazepin-11-yl) benzoic acid, 4-{[4-(4-Ethyl- phenyl) 2.2-dimethyl-(2H)-thiochromen-6-yl]ethynyl }benzoic acid, 4-[4-2methyl-1,2-dicarba- closo-dodecaboran-1-yl-phenylcarbamoyl]benzoic acid, 4-[4,5,7,8,9,10-hexahydro-7,7,10,10- tetramethyl-1-(3-pyridylmethyl)-anthra[1,2-b]pyrrol-3—yl]benzoic acid, (3 -pyridylmethyl)-]5-thia- anthra[2,1-b]pyrrol-3-yl)benzoic acid, and (3-pyridylmcthyl)-anthra[2m1-d]pyrazol-3-yl} benzoic acid; or wherein said retinoid X receptor antagonist is selected from the group consisting of: LGN100572, LGN100574, 1-(3-hydroxy-5,6,7,8-testrahydro-5,5,8,8-tetramethylnaphthalene-2- yl)ethanone, 1-(3-propoxy-5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphthalene-2-yl)ethanone, 3-(3- propoxy-5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphtha lene-2-yl)but-2-enenitrile, ~~ 3-(3-propoxy- 5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphthalene-2-yl )but-2-enal, (2E,4E,6E)-7-3[-propoxy- 5,6,7,8-tetrahydro 5,5,8,8-tetramethyl-2-naphthalene- 2-yl]-3-methylocta-2,4,6-trienoic acid, 4- [3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)carbonyl] benzoic acid, 4-[1-(3,5, 5,8,8- pentamethyl-5,6,7,8-tetrahydro-2-naphthyl)ethenyl] bwenzoic acid, 4-[1(3,5,5,8,8-pentamethyl- 5,6,7,8-tetrahydro-2-naphthyl)cyclopropyl] benzoic acid, 4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8- tetrahydro-2-naphthyl)ethenyl] benzenete trazole, 2-[ 1-(5,5,8,8-tetramethyl-5,6,7,8-tetrahydro-2- naphthyl) ethenyl]pyridine-5-carboxylic acid, 2-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2- naphthyl)ethyl]pyridine-5-carboxylic acid, ethyl-2-[1-(3,5,5,8, 8-pentamethyl-5,6,7,8-tetrahydro- 2-naphthyl)ethenyl]pyridine-5-carboxylate, 5-[1- 3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2- naphthyl)ethenyl]pyridine-2-carboxylic acid, 2-[1-( 3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro-2- naphthyl) cyclopropyl]pyridine-5-carboxylic acid, methyl 2-[1-(3,5,5,8,8-pentamethyl-5,6,7,8- tetrahydro-2-naphthyl)cyclopropyl]pyridine-5-carboxylate, 4-[1-(3,5,5,8, 8-pentamethyl-5,6,7,8- tetrahydro-2-naphthyl)ethenyl]-N-(4-hydroxyphenyl)benz amide, 2-[1-(3,5,5,8,8-Pentamethyl- 5,6,7,8-tetrahydro-2-naphthyl) ethenyl] pyridine-5-carbboxylic acid, 2-[1-(3,5,5,8,8-Pentamethyl-5, 6,7,8-tetrahydro-2-naphthyl)cyclopropyl]pyridine-5-caxrboxylic acid, 4-[(3,5, 5,8,8-pentamethyl- 5,6,7,8-tetrahydro-2-naphthyl)carbonyl]benzoic acid butyloxime, 4-[(3,5,5,8,8-pentamethyl- 5,6,7,8-tetrahydro-2-naphthyl) carbonyl]benzoic acidl propyloxime, 4-[(3,5,5,8,8-pentamethyl- 5,6,7,8-terrahydro-2-naphthyl)carbonyl]benzoic acid cyanoimine, 4-[(3,5,5,8,8-pentamethyl-
5.6,7,8-tetrahydro-2-naphthyl)carbonyl]benzoic acid allyloxime, 4-[(3,5,5,8,8-pentamethyl- AMENDED SHEET 11.01.2006
5,6,7,8-tetrahydro-2-naphthyl)carbonyl]benzoic acid 4-(3-methylbut-2-enoic acid)oxime, and 4- [(3,5,5,8,8-pentarnethyl-5,6,7,8-tetrahydro-2-naphthyl)carbonyl]benzoic acid 1-aminoethyloxime, (2E,4E,6Z)-7-(3-m-propoxy-5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphthalen_e-2-yl)-3-methyloc- ta-2,4,6-trienoic acid, 4-(5SH-2,3(2,5 dimethyl-2,5-hexano)-5-n-propyldiben zo[b,e][1,4]diazepin- 11-yl)benzoic acid, and 4-(5H-2,3-(2,5-dimethyl-2,5-hexano)-Smethyl-8-ni trodibenzo[b,e] [1,4] diazepin-11-yl)benzoic acid; or wherein said Vitamin D receptor antagonist is selected from the group consisting of: 1 alpha, 25-(OH»-D3-26,23 lactone; lalpha, 25-dihydroxyvitamin D (3); th.e 25-carboxylic ester ZK 159222; (23S7)- 25-dehydro-1 alpha-OH-D (3); (23R)-25-dehydro-1 alpka-OH-D (3); 1 beta, (OH), Ds; 1 teeta, 25(0OH),-3-epi-Ds; (23S) 25-dehydro-1 alpha(OH) D3-26,23-lactone; (23R) 25-dehydro-1 alpha(OH)D3-26,23-lactone and Butyl-(5Z,7E,22E-(1S,77E,22E-(1S,3R,24R)- 1,3,24-trihydroxy=-26,27-cyclo-9,10-secocholesta-5,7,10(1 9),22-tetraene-25-carboxylate).
20. The metheod of claim 1, wherein reducing said capacity of the stem cells in responding to signaling pathways involving the retinoic acid receptor, or the retinoid X receptor or the Vitamin D receptor is by ex-vivo culturing the stem cells in a presence of an effective amount of at least one retinoic acid receptor antagonist, at least one retinoid X receptor anta gonist and/or at least one Vitamin D receptor antagonist, optionally for a time period of 0.1-50 %= of an entire ex-vivo culturing period of the stem cells.
21. A method of ex-vivo expanding a population of hematopoietic stem cells, the method comprising: providing stem c-ells obtained from adult or neonatal umbilical cord wholes white blood cells or whole bone marrow cells sample with ex-vivo culture conditions for stem cells ex-vivo cell proliferation and, at the same time, for reducing a capacity of said stem cells in responding to retinoic acid, retinoids and/or Vitamin D, thereby expanding a population of a renewable stem cells in said sample.
22. A method of expanding ex-vivo a population of hematopoietic renewable stem cells, the method comprisimg: AMENIDED SHEET 11.01.2006 obtaining adult or neonatal urmbilical cord whole white blood cells or whole bone marrow cells sample; and culturing said cells ex-vivo under conditions that result in proliferation of said cells and at the same time culturing cells under one of the following conditions: reducing capacity of said stem cells to respond to signaling pathways involving the retinoic acid receptor, the retinoid X receptor and/or the Vitamin D receptor, culturing the cells in the presence of nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite; reducing capacity of the stem cells in responding to retinoic acid, retinoids and/or Vitamin D; and reducing capacity of the stem cells in responding to signaling pathways involving the retinoic acid receptor, retinoid-X receptor and/or Vitamin D receptor; thereby expanding a ex-vivo a population of a renewable stem cells in said sample.
23. A method of genetically modifying stem cells with an exogene, said method comprising: (a) culturing stem cells to be genetically modified ex-vivo according to a method according to any of the preceding claims, and (b) genetically modifying said stem cells with an exogene.
24. The method of claim 23, wherein the exogene is provided in a vector.
25. The method of claim 24, wherein the vector is a viral vector or a nucleic acid vector.
26. A method of preserving stem cells comprising: storing harvested and isolated stem cells under conditions, wherein said cells are contacted with an effective amount of an agent that substantially inhibits differentiation of said stem cells, wherein said agent is selected from the group consisting of: an agent that reduces expression and/or activity of CD38 of said stem cells, an agent that reduces the capacity to respond to retinoic acid, retinoids and/or VitaminD, an agent that reduces the capacity to respond to signaling pathways involving the retinoic acid receptor, the retinoid X receptor and/or the Vitamin D receptor in said stem cells; and an agent that is nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog AMENDED SHEET 11.01.2006 derivative or a nicotinamide or a nicotinamide analog metabolite.
27. A stem cell preparation comprising: an expanded population of stem cells propagated according to a rnethod according to any of the claims | to 22; and a pharmaceutically acceptable carrier.
28. The transplantable hematopoietic cell preparation of claim 27, wherein reducing said capacity of the stem cells in responding to Vitamin D is reversible.
29. The stem cell preparation according to claim 27, cormprising: a plurality of cells characterized by 3-20 % of said cells being reselectable for CD34" cells, of which at least % of cells are CD34” dim, wherein, in said reselectable CD34" cells, a rnajority of cells which are Lin’ are also CD34" dim cells.
30. A stem cells separation / washing and/or culturing agent supplemented with an effective amount of an agent, selected from the group consisting of an agent: that reeduces expression and/or activity of CD38 in said stem cells, that re=duces the capacity of stem cells in responding to retinoic acid, retinoids and/or Vitamin D in said stem cells, that resduces reducing capacity of said stem cells in responding to signaling pathways involving the retinoic acid receptor, the retinoid X receptor and/or the Vitamin D receptor in said mononuclear cells; and nicotimamide, a nicotinamide analog, a nicotinamide or a nicotiramide analog derivative or a nicotinamide or a nicotinamide analog metabolite.
31. Use of an agent selected from the group consisting of an agent: that reduces expression and/or activity of CD38 in said stem cells, that re duces the capacity of stem cells in responding to retinoic acid, retinoids and/or Vitamin D in said. stem cells, AMENDED SHEET 11.01.2006 that reduces reducing capacity of said stem cells in responding to signaling pathveays involving the retinoic acid receptor, the retinoid X receptor and/or the Vitamin D receptor in said mononuclear cells; and nicotinamide, a nicotirmamide analog, a nicotinamide or a nicotinamide analog «derivative or a nicotinamide or a nicot®namide analog metabolite, for preserving stem cell s ex vivo.
32. Use of an agent selected from the group consisting of an agent: that reduces expression and/or activity of CD38 in said stem cells, that reduces the capacity of stem cells in responding to retinoic acid, retinoids and_/or Vitamin D in said stem cells, that reduces the capaci ty of said stem cells in responding to signaling pathways involving the retinoic acid receptor, the retinoid X receptor and/or the Vitamin D receptor in saicd mononuclear cells; and nicotinamide, a nicotimamide analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicoti namide analog metabolite, for the preparation of a composition for mobilizing bone marrow stem cells into the peripheral blood of an individual.
33. The use according to claim 32, wherein the composition further comprises at least one cytokine.
34. The use according to claim 33, wherein said cytokine is selected from the gr-oup consisting of: stem cell factor, IFLT3 ligand, interleukin-6, interleukin-1, interleukin-2, dnterleukin-10, interleukin-12, tumor necrosis factor-a, thrombopoietin, interleukin-3, granulocyte colony stimulating factor, macrophage colony stimulating factor, granulocyte/macrosphage colony stimulating factor and exythropoietin.
35. Use of an agent sc¢lected from the group consisting of an agent: that reduces expression and/or activity of CD38 in said stem cells, AMENDED SHEET 11.01.2006 that reduces the capacity of stem cells in responding to retinoic acid, retinoids and/or Vitamin D in said stem cells, that reduces reducing capacity of said stem cells in responding to signaling pathways involving the retinoic acid receptor, the retinoid X receptor amd/or the Vitamin D receptor in said mononuclear cells; and nicotinamide, a nicotinamide analog, a nicotinamide or a nicotinamide analog derivative or a nicotinamide or a nicotinamide analog metabolite, for the preparation of a pharmaceutical composition fox expanding a population of stem cells, while at the same time, substantially inhibiting differentiation of the stem cells.
36. Use of a stem cell preparation according to any of the claims 17 to 29 for the preparation of a pharmaceutical composition for transplanting or imp lanting hematopoietic cells.
37. Use of a stem cell preparation according to any of the claims 17 to 29 for the preparation of a pharmaceutical composition for adoptive immunotherapy.
38. An assay for determining whether a retinoic acid receptor antagonist or an retinoid X receptor antagonist or an vitamin D receptor antagonist is an effective cell expansion agent, the assay comprising: culturing a population of stem cells or cells of a substantially non-differentiated cell line, in the presence of the retinoic acid receptor antagonist and monitoring expansion of said cells, wherein if increased expansion and decreased differentiation occurs, as compared to non- treated cells, the retinoic acid receptor antagonist is an effective cell expansion agent.
39. The assay of claim 38, wherein culturing said population of stem cells or cells of a substantially non-differentiated cell line is performed in a presence of an effective amount of a cytokine.
40. The assay of claim 39, wherein said cytokine is am early acting cytokine or an late acting cytokine.
41. The assay of claim 40, wherein said early acting cytokine is selected from the group comprising stem cell factor, FLT3 ligand, interleukin-1, interleukin-2, interleukin-3, interleukin- AMENDED SHEET 11.01.2006
6, interleukin-10, intexleukin-12, tumor necrosis factor-a and thrombopoietin, and wherein said late acting cytokines are selected from the group comprising granulocyte colony stimulating factor, granulocyte/macrophage colony stimulating factor, erythropoietin, FGF, EGF, NGF, VEGF, LIF, Hepatocyte growth factor and macrophage colony stimulating factor.
42. The assay of claim 38, wherein said retinolo acid receptor antagonist is selected from the group consisting of : AGN 194310 ; AGN 193109; 3- (4-Methoxy-phenylsulfanyl)-3-methyl-butyric acid; 6-Methoxy-2, 2-dimethvl- thiochroman-4-one, 2, 2-Dimethyl-4-oxo-thiochroman- 6-yltrifluoromethane-sulfonate ; Ethyl 4- ( (2, 2 dimethyl-4-0x o-thiochroman-6-yl) ethynyl) -benzoate; Ethyl 4- ( (2, 2-Aimethy 1-4- triflouromethanensulfomyloxy- (2H)- thiochromen-6-yl) ethynyl) -benzoate (41); Thiochromen-6- yl]-ethynyl]-benzoate (yl); (p- [ (E)-2- [3'4'-Dihydro-4, 4'-dimethyl-7'- (hepty”loxy)-2'H-1- benzothiopyran-6'yl] propenyl] benzoic acid 1'1'-dioxide ; 2E, 4E, 6E- [7- (3, 5-Di-t-butyl-4-n- butoxyphenyl)-3-methy’l]-octa-2, 4,6-trienoic acid; 2E, 4E, 6E- [7- (3, 5-Di-t-butyl-4-n- propoxyphenyl)-3-methayl]-octa-2, 4,6-trienoic acid; 2E, 4E, 6E- [7- (3, 5-Di -t-butyl-4-n- pentoxyphenyl)-3-meth yl]-octa-2, 4,6-trienoic acid; 2E, 4E, 6E- [7- (3, 5-Di -t-butyl-4-n- hexoxyphenyl)-3-methy/l]-octa-2, 4,6-trienoic acid; 2E, 4E, 6E- [7- (3, 5-Di -t-butyl-4-n- heptoxyphenyl) -3-methyl] -octa-2, 4,6-trienoic acid; 2E, 4E, 6E- [7- (3, 5-Di-t-butyl-4-n- octoxyphenyl)-3-methy1]-octa-2, 4,6-trienoic acid; (2E, 4E, 6E)-7-[3-t-butyl-5-(1-phenyl-vinyl)- phenyl]-3-methyl-octa-2, 4,6-trienoic acid; 2E, 4E, 6E- [7- (3, 5-Di-t-butyl-4- { [4, S-. sup. 3 H.
sub. 2]-n-pentoxy} phemyl)-3-methyl]-octa-2, 4,6-trienoic acid; (2E, 4E)- (IRS, 2RS)-5- [2- (3, 5- di-tert. butyl-2-ethoxy-phenyl)-cyclopropyl]-3-met hyl-penta-2,4-dienoic acid ethyl ester; (2E, 4E)- (IRS, 2RS)-5- [2— (3, 5-di-tert. butyl-2-ethoxy-phenyl)-cyclopropyl]-3-met hy-l-penta-2,4- dienoic acid; (2E, 4E)- (1RS,2RS)-5-[2-(3, 5-di-tert. butyl-2-butoxy-phenyl)-cyclopropyl]-3-met hyl-penta-2,4-dienoic acid; (2E, 4E, 62)-7- [3, 5-di-tert. butyl-2-ethoxyphenyl] 3-methyl-2 4, 6- octatrienoic acid; (2E, 4E, 6Z)-7- [3, S-di-tert. butyl-2-butyloxyphenyl] -3-methyl-2, 4.6- octatrienoic acid; 4- (5, 6,7, 8-tetrahydro-5,5, 8, 8-tetramethyl-2-naphthalene-carboxamido) benzoic acid; (2E, 4E)-3-methyl-5- [ ( 1 S, 2S5)-2- (5, 5,8, 8-tetramethyl-5,6, 7,8 -tetrahydro- naphthal en-2-yl) -cyclopropyl]-penta-2, 4-dienoic acid ; p- [ (E)-2- [3', 4-Dihydro-4', 4'- dimethyl-7'-(heptyloxy)-2'H-1-benzothiopyran-6'-yl ] propenyl] benzoic acid; 1', 1'-dioxide, 4- (7,7,10,10-Tetramethyl- 1-pyridin-3-ylmethyl-4, 5,7, 8,9, 10-hexahydro-1 H-naph to [23-g] indol-3-yl)-benzoic acid ; (2E,4E, 6Z)-7-[3,5-di-tert.butyl-2-methoxyphenyl]-3-methyl-2, 4.6- AMENDED SHEET 11.01.2006 octatrienoic acid; (2E,4E, 6Z)-7-[3,5-di-tert. butyl-2-eth«oxyphenyl] -3-methyl-2, 4,6-octatrienoic acid; (2E,4E,6Z)-7-[3,5-di-tert. butyl-2-hexyloxypherayl]-3-methyl-2, 4,6-octatrienoic acid; (2E,4E,6Z)-7-[3,5-di-tert. butyl-2-octyloxyphenyl]-3-mesthyl-2, 4,6-octatrienoic acid; and (2E, 4E)- (IRS, 2RS)-5- [2- (3, 5-di-tert-butyl-2-butoxy-phenyl) -cyclopropyl]-3-met hyl-penta-2,4- dienoic acid, (2E, 4E, 6Z)-7- (3-n-propoxy-5, 6,7, 8-tetrahydro-5, 5,8, 8-tetramethylnaphthalene- 2 -yl)-3-methylocta-2, 4,6-trienoic acid, 4-(SH-2, 3 (2,5 «imethyl-2,5-hexano)-5-n-propyldibenzo [b, €] [1, 4] diazepin-11-yl) benzoic acid, 4- (5H-2, 3- (2, 5-dimethyl-2, 5-hexano)-5methyl-8- nitrodibenzo [b, €] [1, 4] diazepin- 11-yl) benzoic acid, 4-{[4-(4-Ethylphenyl) 2, 2-dimethyl- (2H)-thiochromen-6-yl] ethynyl} benzoic acid, 4- [4-2methyl-1, 2-dicarba-closo-dodecaboran-1- yl-phenylcarbamoyl] benzoic acid, 4- [4,5,7, 8,9,10-hexahydro-7,7, 10, 10-tetramethyl-1- (3- pyridylmethyl)-anthra [1,2 -b] pyrrol-3-yl]benzoic acid, (3-pyridylmethyl) -] 5-thiaanthra [2, 1-b] pyrrol-3-yl) benzoic acid, and (3-pyridylmethyl) -anthraa [2ml-d] pyrazol-3-yl] benzoic acid, or wherein said retinoid X receptor antagonist is selected from the group consisting of : LGN100572, LGN100574, 1- (3-hydroxy-5, 6,7, 8-tetrahydro-5,5, 8,8 -tetramethylnaphthalene-2-yl) ethanone, 1- (3-propoxy-5, 6,7, 8-tetrahydro-5,5, 8,8-tetramethaylnaphthalene-2-yl) ethanone, 3- (3- propoxy-5, 6,7, 8-tetrahydro-5,5, 8, 8-tetramethylnaphthalene-2-yl) but-2-enen itrile, 3- (3- propoxy-5, 6,7, 8-tetrahydro-5,5, 8,8-tetramethylnaphtha lene-2-yl) but-2-enal, (2E, 4E, 6E) -7-3 [-propoxy-5,6, 7,8-tetrahydro 5,5, 8,8-tetramethyl-2-maphthalene-2-yl]-3-methylocta-2, 4,6- trienoic acid, 4- [3, 5,5, 8,8-pentamethyl-5, 6,7, 8-tetrahy>dro-2-naphthyl) carbonyl] benzoic acid, 4- [1- (3, 5,5, 8,8-pentamethyl-5, 6,7, 8-tetrahydro-2-nap-hthyl) ethenyl] benzoic acid, 4- [1 (3,5, 5,8, 8-pentamethyl-5,6, 7, 8-tetrahydro-2-naphthyl) cyclopropyl] benzoic acid, 4- [1- (3, 5,5, 8,8- pentamethyl-5, 6,7, 8-tetrahydro-2-naphthyl) ethenyl] benzenete trazole, 2- [1- (5, 5.8, 8- tetramethyl-5,6, 7,8-tetrahydro-2-naphthyl) ethenyl] pyridine-5-carboxylic acid, 2- [1- (3, 5,5, 8,8-pentamethyl-5, 6,7, 8-tetrahydro-2-naphthyl) ethyl] pyridine-5-carb oxylic acid, ethyl-2- [1- : (3, 5.5, 8, 8-pentamethyl-5,6, 7,8-tetrahydro-2-naphthyl) ethenyl] pyridine-5-carboxylate, 5- [1-3, 5,5, 8, 8-pentamethyl-5, 6,7, 8-tetrahydro-2-naphthyl) eth enyl] pyridine-2-car boxylic acid, 2- [1- (3, 5,5, 8,8-pentamethyl-5, 6,7, 8-tetrahydro-2-naphthyl) cyclopropyl] pyridine-5-carboxylic acid, methyl 2- [1- (3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydro—2-naphthyl) cyclopropyl] pyridine- 5- carboxylate, 4-[1-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahy-dro-2-naphthyl)ethenyl]-N-(4-hydroxy- phenyl)benzamide, 2- [1- (3,5,5,8,8-Pentamethyl-5,6,7_8-tetrahydro-2-naphthyl)ethenyl] pyri- AMENDED SHEET 11.01.2006 dine-S-carboxylic acid, 2- [1- (3, 5,5, 8,8-Pentamethyl-5, 6,7, &-tetrahydro-2-naphthyl) cyclopro- pyllpyridine-5-carboxylic acid, 4-[(3,5,5,8,8-pentamethyl-5,66,7,8-tetrahydro-2-naphthyl)carbo- nyllbenzoic acid butyloxime, 4-[(3,5,5, 8,8-pentamethyl-5, 6,77, 8-tetrahydro-2-naphthyl) carbo- nyl]lbenzoic acid propyloxime, 4-[(3,5,5,8,8-pentamethyl-5,6, 7,8-terrahydro-2-naphthyl) carbo- nyllbenzoic acid cyanoimine, 4-[(3,5,5,8,8-pentamethyl-5,6,77,8-tetrahydro-2-naphthyl) carbo- nyl]benzoic acid allyloxime, 4-[(3,5,5,8,8-pentamethyl-5,6,7, 8-tetrahydro-2-naphthyl)carbonyl] benzoic acid 4-(3-methylbut-2-enoic acid)oxime, and 4-[(3.5,5,8,8-pentamethyl-5,6,7,8-tetra- hydro—2-naphthyl)carbonyl] benzoic acid 1-aminoethyloxime, (2E, 4E, 6Z)-7-(3-n-propoxy- 5,6,7,8-tetrahydro-5,5,8,8-tetramethylnaphthalene-2-yl)-3-meth_ylocta-2,4,6-trienoic acid, 4- (SH- 2,3(2,5-dimethyl-2,5-hexano)-5-n-propyldibenzo[b,e][1,4]diaze=pin-11-yl)benzoic acid, and 4- (SH-2, 3-(2,5-dimethyl-2,5-hexano)-5-methyl-8-nitrodibenzo [b_ ¢] [1, 4] diazepin-11-yl) benzoic acid, or whesrein said Vitamin D receptor antagonist is selected from the group «consisting of : 1 alpha, 25- (OH)- D3-26. 23 lactone; | alpha, 25-dihydroxyvitamin D (3); the= 25-carboxylic ester ZK159222; (23S)-225-dehydro-1 alpha-OH-D (3); (23R)-25-dehydro-1 alpha-OH-D (3); 1 beta, 25 (OH) 2 D3 ; 1 beta, 25(0H)2-3-epi-D3 ; (23S) 25-dehydro-1 alpha (OH) D3-26,23-lactone ; (23R) 25- dehydro-1 alpha (OH) D3-26,23-lactone and Butyl- (5Z, 7E, 22E- (1 S, 7E, 22E- (1 S, 3R, 24R)- 1, 3,24 -trihydroxy-26, 27-cyclo-9,10 -secocholesta-5, 7,10 (19), 22-tetraene-25-carboxylate).
43. The assay of claim 38, wherein said cells are selected from the group consisting of hematopoietic stem cells, embryonic stem cells or adult stem cells.
44. The assay of claim 38, wherein said stem cells are deri ved from a source selected from the growp consisting of bone marrow, peripheral blood and neon atal umbilical cord blood.
45. The assay of claim 44, wherein said stem cells are mixed with committed cells.
46. The assay of claim 38, wherein said monitoring «decreased differentiation is by determining hematopoietic cell surface expression of CD34 and~or by determining an absence, or signific antly diminished hematopoietic cell surface expressiom of CD38, CD3, CD61, CD19, CD33, D 14, CD 15 or CD4. AMENDED SHEET 11.01.2006
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