ZA200304741B - Von willebrand factor (vWF) cleaving protease polypeptide, nucleic acid encoding the polypeptide and use of polypeptide. - Google Patents

Description

von Willebrand Factor (vWF) cleaving protease polypeptide, nucleic acid encoding the polypeptide and use of polypeptide

Field of the Invention

The invention relates to a VWF cleaving protease (VWE- cp) polypeptide or a partial sequence thereof, a nucleic acid molecule encoding the amino acid sequence of a vWF -cp polypeptide, and a composition comprising the polypeptide.

The invention also relates to the use of the vWF-cp polypeptide for production of anti-vWF-cp polypeptide antibodies and for production of a preparation for prophylaxis and therapy of thrombosis and thromboembolic disease.

Background of the Invention

VWF is a glycoprotein circulating in plasma as a series of multimers ranging in size from about 500 to 20,000 kD. Multimeric forms of VWF are composed of 250 kD polypeptide subunits linked together by disulfide bonds.

VWF mediates the initial platelet adhesion to the subendothelium of a damaged vessel wall, though only the largest multimers appear to exhibit haemostatic activity.

Such vWF multimers having large molecular masses are stored in the Weibel Palade bodies of endothelial cells, and it is believed that endothelial cells secrete these large polymeric forms of vWF. Those forms of VWF which have a low molecular weight (low molecular weight or LMW vWF) are believed to arise from proteolytic cleavage of the larger multimers. .

A small portion of the VWF present in normal plasma circulates as 189, 176 and 140 kD fragments resulting from proteolytic degradation of vWF in vivo, the 140 kD fragment being derived from the N-terminal region, and the 176 kD fragment from the C-terminal region of the subunit. When low molecular weight (LMW) forms of VWF are isolated from normal human plasma and subjected to SDS-PAGE (polyacrylamide gel electrophoreses) after disulfide reduction, an unusually high portion of vWF fragments are found. This finding is compatible with the view that LMW forms of VWF have been partially or predominantly derived from large multimers by proteolytic degradation.

The proteolytic degradation of VWF is a physiological process in healthy individuals, yet in patients suffering from von Willebrand disease (VWD) type 2A it may be accelerated, and as a consequence these patients lack the

VWF multimers with the largest molecular masses. A lack of : large vWF multimers and an increased level of proteolytic . fragments are also observed in acquired von Willebrand disease (vWD) associated with myeloproliferation syndrome, indicating increased in vivo proteolysis in this condition as well.

In patients with thrombotic thrombocytopenic purpura (TTP), on the other hand, unusually large VWF multimers are detected, and increased vWF binding to platelets has been demonstrated in these patients (Moake et al. 1982, N. Engl.

J. Med. 307: 1432-1435). Familial TTP is associated with a severe congenital deficiency of vWF protease, while the presence of vWF-cleaving proteases inhibiting autoantibodies has been observed in patients with non- familial TTP.

The large multimers of vWF associated with TTP normally disappear after a patient is transfused with normal fresh frozen plasma. Presently, plasma exchange is the most important treatment for TTP, although significant side effects have been reported with this therapy. The existence of a severe congenital deficiency of VWF protease has been established in patients with familial TTP and the presence of a vWF-cleaving protease inhibiting autoantibodies has been observed in patients with non- familial TTP.

Several proteases have been shown to be able to cleave vWF, thereby impairing its binding affinity for platelets.

However, in vitro the cleavage of vWF with these proteases in each case results in cleavage products different from the fragments derived from in vivo cleavage.

Thus, for example, while plasmin is capable of cleaving several peptide bonds in vWF, plasmin-treated vWF retains a high molecular weight core region retaining about 70% of its platelet agglutinating activity (determined as ristocetin cofactor). A 34 kD peptide is split from the N- termini of individual vWF subunits in the early stages of plasmin treatment, and epitope mapping of such plasmin- induced fragments show that these fragments originated from regions of the vWF subunit that are different from the VWF fragments. present in circulating plasma.

Porcine pancreatic elastase and various serine proteases released from human leukocytes have also been shown to degrade vWF proteolytically with a resultant loss of large multimers. Epitope mapping of the degradation products again indicates that these fragments also differ from those present in normal plasma and in vWD type 2A. In addition, a calpain-like protease released from human platelets has been shown to degrade large vWF multimers and to create vWF fragments similar to those observed in vivo.

. B2003/ 4741

Summary of the Invention

It is an object of the invention to provide for a vWF cleaving protease (vWF-cp) polypeptide or a partial sequence thereof. .

It is another object of the invention to provide for a composition comprising a vWF-cp polypeptide.

It is an object of the present invention to provide for a nucleic acid molecule comprising a nucleic acid sequence encoding an amino acid sequence of a vWF-cp polypeptide.

It is also an object of the invention to provide for recombinant vWF-cp polypeptide.

It is another object of the invention to provide a method of production of a recombinant vWF-cp polypeptide.

It is also an object of the invention to provide for a method of purification of vWF using a vWF-cp polypeptide or a partial sequence thereof.

It is also an object of the invention to provide for anti-vWF-cp polypeptide ligands.

Brief Description of the Drawing

Fig.l shows the schematic purification scheme of the vWF-cp from plasma.

Fig. 2 shows the SDS-PAGE of purified of vWE-cp polypeptides under non-reducing (A) and reducing conditions in the presence of DIT (B).

Fig. 3 shows the partial nucleotide and amino acid sequence of the vWF-cp polypeptide.

Fig. 4 shows the schematic drawing of the genomic localization of the vWF-cleaving protease gene.

Fig. 5 shows the complete amino acid and nucleotide sequence of the vWF-cleaving protease. Start and end of the signal peptide, metalloprotease, the cystein rich region (ACR), thromspondin type 1 motif (TSP 1), and disintegrin like motif (RGD) domains are indicated by arrows. Furin cleavage site, catalytic site and Met-turn are underlined.

The putative N-glycosylation sites are indicated by asteriks.

Fig. 6 shows the schematic representation of the domain organization of the vWF-cleaving protease and those of the human members of the ADAM-TS family. The domain structures of the vWF-cleaving protease (ADAMTS 13) and of all known human ADAMTS proteins are shown. ADAMTS 10 cannnot be found in databases and ADAMTS 11 is identical to

ADAMTS 5.

Fig. 7 shows Western blot analysis of cells transfected with a vector comprising vWF-cp polypeptide encoding seguences, with lane 1: standard molecular weight marker, lane 2: control vector cDNA3.l (+) and lane 3: vector pCMV-vWEcp. The specific vWF-cp polypeptide band is indicated by the arrow.

Fig. 8 shows SDS-Page of vWF-cp activity on vWF with lane 1: purified plasmatic vWF as control, lane 2: vWF incubated with normal human plasma, lane 3: vWF incubated with buffer as contrel, lane 4: vWF incubated with of cell lysate of SK-Hep cells transfected with control vector cDNA3.1(+) and lane 5: vWF incubated with of cell lysate of ~ SK Hep cells transfected with vWF-cp expressing vector pCMV-vWECP .

Detailed Description of the Invention © 30 In accordance with one of the objects of the invention there is provided a vWF-cp polypeptide comprising (a) an amino acid sequence selected from the group of SEQ ID. NO.

1, SEQ ID NO. 2, SEQ ID NO. 3, SEQ ID NO. 4 and SEQ ID NO. 5, or (b) an amino acid sequence having at least 80% } identity to the amino acid sequence of (a). Polypeptide molecules can also have at least 90%, or at least 95% identity to the amino acid sequence of (a). The polypeptide ~ preferably has an amino acid sequence as shown in Fig. 5 or a partial sequence thereof of at least 12, preferably at least 15 amino acids. Preferably, the vWEF-cp polypeptide has vWF cleaving activity. The vWF-cp polypeptide of the invention preferably retains vWF protease activity in the presence of serine protease inhibitor and a calpain protease inhibitor. The serine protease inhibitor can be diisopropyl fluorfophosphate or any analogue thereof which has serine protease inhibitor activity. The calpain inhibitor can be Z-Leu-Leu-Tyr—-CHN2Z or any analogue thereof having calpain inhibitor activity.

The term “polypeptide” means a chain of amino acid residues linked through peptide bonds between the o- carboxyl carbon of one amino acid residue and the o- nitrogen of the next amino acid, and comprising 10 or more amino acid residues joint together. The polypeptide may contain other than the 20 gene-encoded amino acids. “Polypeptide” refers both to short chains, such as peptides, oligopeptides, or oliogomers, and to longer chains, generally referred to as proteins. “Polypeptide” ~ include amino acid sequences modified either by natural processes, such as posttranslational modifications, or chemical modifications, which are known in the art.

Modifications can occur anywhere in the polypeptide. The modification may lead to a variant of the polypeptide which may differ in amino acid sequence from original polypeptide by one or more substitutions, additions, deletions, fusions or any combination, or a naturally occurring variant, such as an allelic variant or non-naturally occurring variant made by mutagenesis or genetic engineering. The “Polypeptide” may be in form of an unprocessed or partial processed precursor, the “mature” polypeptide, or a fragment having an amino acid sequence that entirely is the same as a part, but not all, of the amino acid sequence of the longer a polypeptide chain. Fragment may be a shorter single continuous region of the longer chain, or comprised within a larger polypeptide of which they form a part. A

Fragment of polypeptide may include, for example a truncated polypeptide having a partial amino acid sequence of the vWF-cp. A “Fragment” can be a biological active fragment that mediate VWF cleaving protease activity, including those with similar activity or improved activity, or with decreased activity. “Identity” means the identity of the amino acid + 20 sequence of a polypeptide to the amino acid sequence of a polypeptide comprising the sequence of SEQ ID. NO 1, SEQ ID

NO. 2, SEQ ID NO. 3, SEQ ID NO. 4 or SEQ ID NO. 5. “At least 80% identity”, means that the amino acid sequence is identical except that the polypeptide sequence differs in not less than 20 amino acids per 100 amino acids. “At least 90%” or “at least 95% identity” means a difference of not less than 10, or not less than 5 amino acids per 100 amino acids.

The term “VWF cleaving protease” (vWF-cp) means a protein or polypeptide having vWF cleaving activity and cleaves VWF high molecular vWF multimers in molecules of )

lower molecular weight which still have vWF activity and properties.

The term “WWF cleaving protease polypeptide” means a polypeptide having at least 10 amino acid residues. The complete amino acid sequence of the unprocessed polypeptide comprises 1427 amino acids. The “mature” polypeptide, which is a part of the larger unprocessed polypeptide should normally begin with or near amino acid 75, beginning with

AAGGILH, and continuing to the carboxyl terminus. The mature vWF cleaving protease has a calculated polypeptide mass of about 145 KD. Additional amino acids which contains secretory or leader sequences, pro-sequences, sequences which aid purification or identification such as multiple

His residues, a FLAG tag or and additional sequence for stability during recombinant production, can be included.

The term “WWF cleaving activity” means a physiological

VWF cleaving activity which is defined by (1) the cleaving vWF at the peptide bond 842Tyr-843Met, (2) having a direct proteolytic activity which converts vWF having a singlet structure to vWF having a satellite structure, and (3) retaining activity in the presence of a serine protease : inhibitor such as diisopropyl fluorophosphate (DFP) and in the presence of a calpain protease inhibitor such as carbobenzyloxy (2) peptidyl diazomethylketone inhibitor (z-

Leu-Leu-Tyr-CHN,) . The proteolytic entities provided with the present invention may also act indirectly via another effector protein, for example a protease. This polypeptide can form an active vWF cleaving complex together with a metal ion selected from the group consisting Ca'*, sr** ,

Mg*t and Ba**. The preferred metal ion is Ca*. This active complex is able to cleave vWF in a physiological manner as described above. The vWF cleaving activity of the polypeptide according to the present invention may be determined by any method described in the art, such as the method according to Furlan et al. (1896, Blood 87: 4223- 4234) or as described in WO 00/50904. Alternatively, a collagen binding assay, e.g. as described in EP 0 816 852, can also be used as a test system.

According to one aspect, the invention provides for an isolated polypeptide comprising an amino acid sequence having at least 80% identity to the amino acid sequence selected from the group of SEQ ID. NO 1, SEQ ID NO. 2, SEQ

ID NO. 3, SEQ ID NO. 4 and SEQ ID NO. 5. According to one embodiment of this aspect of the invention the isolated polypeptide comprises an amino acid sequence selected from the group of SEQ ID. NO 1, SEQ ID NO. 2, SEQ ID NO. 3, SEQ

ID NO. 4 and SEQ ID NO. 5.

The term “isolated” means altered from the natural state and/or removed from its original environment.

The invention also provides for a substantially pure vWF-cp polypeptide comprising (a) an amino acid sequence of selected from the group of SEQ ID. NO 1, SEQ ID NO. 2, SEQ

ID NO. 3, SEQ ID NO. 4 and SEQ ID NO. 5, or (b) an amino acid sequence having at least 80% identity to the amino acid sequence of (a).

The term “substantially pure” means purity as high as the relative proportions of polypeptide chains with the vWF-cp activity present in an amount of above 50%, especially above B0%, most preferred about 90%, of total protein compared to the vWF protease activity in plasma.

The purity is determined by a purity as determined by SDS-

PAGE (silver stained or Commassie stained) and Western blot and a ratio of vWF protease polypeptide to total protein amount, said purity is preferably greater than about 98%.

If the purified vWF-cp polypeptide is purified from plasma the preparation contains between 0.001% and 1%, preferably 0.002% of the initial amount of plasma protein, and at least 1%, preferably at least 2.3% of the initial enzyme activity, which may be partially inactivated during the purification procedure. The preparation comprising a vWF - cp polypeptide according to the present invention is essentially free of vWF or vWF fragments, i.e. having a vWF content of below 5%, preferably below the detection limit of an assay used to detect vWF, such as a collagen-assay described in EP 0 816 852.

The substantially pure vWF-cp polypeptide exhibits an apparent molecular weight of about 180 KD, 170 kD, 160 kD or 120 KD in SDS-PAGE analysis under reducing conditions.

The substantially pure vWF protease polypeptide exhibits an apparent molecular weight of about 150 KD, 140 kD, 130 kD or 110 KD in SDS-PAGE analysis under non- reducing conditions.

The SDS-PAGE is performed under reducing conditions or non-reducing conditions. It is well known in the art, that molecular weight determination using SDS PAGE results in the detection of apparent molecular masses, which may be different from the molecular masses of the native, non- denatured protein.

Analysis of non-denatured material by mass spectrometry showed very broad peaks of high molecular weight. This finding is in agreement with appearance, in gel filtration experiments, suggesting that the proteins in this preparation tend to polymerize under physiologic conditions (a property of clusterin).

The polypeptide of the invention can be isolated from any source which comprising a vWEF-cp polypeptide.

The term “source” means human plasma, a supernatant of a cell culture expressing a VWF -cp polypeptide according : to the present invention, milk or other body fluids of transgenic animals expressing the polypeptide of the invention.

Purification of vWF-cp polypeptide can be performed by a combination of chromatographic steps including immunoaffinity chromatography, gel filtration, and ion ‘exchange chromatography. For example, the first purification step can be immunoaffinity chromatography, the second step can be gel filtration, followed by one or more additional immunoaffinity chromatography steps. A further purification can be performed using ion exchange chromatography, preferably anion exchange chromatography and at least one affinity chromatography. Further purification steps can be performed using ion exchange chromatography, gel filtration and further affinity chromatography steps.

According to one aspect of the invention there is provided a composition comprising a vWF-cp polypeptide comprising (a) an amino acid sequence selected from the group of SEQ ID. NO 1, SEQ ID NO. 2, SEQ ID NO. 3, SEQ ID

NO. 4 and SEQ ID NO. 5, or (b) an amino acid sequence having at least 80% identity to the amino acid sequence of (a) -

The composition of the invention comprising the polypeptide may further comprise a divalent metal ion selected from the group of Ca?*, sr?*, Ba?" and Mg®.

A further aspect of the present invention relates to a complex of isolated vWF-cp polypeptide having vWF-cp activity, VWF and a metal ion selected from the group consisting of Ca?', Sr?', Ba?" and Mg*'. The preparation may comprise divalent metal ions in a concentration of about 1 to 10° ions per polypeptide molecule with VWF protease : ‘activity and can contain vWF -cp polypeptide in an essentially purified form.

The composition may comprise clusterin or an analog or derivative thereof having clusterin activity. With relation to the activity of the protein, the term “derivative” or “analog” of clusterin refers to a polypeptide that show the same characteristics as the native clusterin protein.

Clusterin is a heterodimeric glycoprotein consisting of two non-identical subunits, with a molecular mass of approximately 80 kDa (Rosenberg et al. 1995, Int. J.

Biochem. Cell Biol. 27: 633-645; Tschopp et al. 1994, Clin.

Exp. Immunol. 97 (Suppl. 2): 11-14). It is produced in a wide array of tissues and found in most biologic fluids.

The physiologic functions described in the prior art include complement regulation, lipid transport, sperm maturation, initiation of apoptosis, endocrine secretion, membrane protection and promotion of cell interactions. It has been found that the unusually high stability of the vWF -cp polypeptide of the present invention in circulating plasma is associated with the presence of clusterin and that the half-life of vWF cleaving protease activity in vivo is between 1 and 4 days, while other proteases in plasma have half-lives in the range of seconds to hours.

The ratio of clusterin to vWF protease polypeptide in a composition according to the present invention is preferably in a range of 10M:1M to 1M:10M, and more preferably the ratio of clusterin and vWF is in the equimolar range. In human plasma, the concentration of VvWF~ cleaving protease is 2 - 10 mg/liter whereas that of clusterin is 50 - 400 mg/liter plasma (the molar ratio of

VWF-cleaving protease to clusterin in human plasma is about 1:20 - 1:100).

In accordance with one of the objects of the invention there is provided a nucleic acid molecule comprising a nucleic acid sequence encoding vWF-cp polypeptide having (a) an amino acid sequence selected from the group of SEQ

ID. NO 1, SEQ ID NO. 2, SEQ ID NO. 3, SEQ ID NO. 4 and SEQ

ID NO. 5, or (b) an amino acid sequence having at least 80% identity to the amino acid sequence of (a).

The term “nucleic acid molecule” means a polynucleotide and generally refers to any DNA or RNA, which also includes variants of the DNA or RNA, the DNA or

RNA which may be modified or unmodified, single~ and double stranded or a mixture thereof, or a short polynucleotide, generally referred to as oligonucleotides. A typical variant of a polynucleotide differs in nucleotide sequence from the original polynucleotide in sequence and may or may not alter the amino acid sequence of the polypeptide encoded by the reference polynucleotide. Nucleotide changes may result in amino acid substitutions, additions, deletions, fusions or truncations in the polypeptide sequence of the polypeptide. The polynucleotide sequence may be modified to improve recombinant expression. Such modification includes use of highly translated codons.

Nucleic acid sequence which do hybridize with the DNA sequence as shown in Fig. 5 or partial sequence encoding an amino acid of at least 12 amino acid are within the scope of the present invention. Hybridization Techniques are well known to the skilled artisan.

According to another aspect of the invention there is provided an expression vector comprising a nucleic acid molecule comprising a nucleic acid sequence encoding a vWF- cp polypeptide having (a) an amino acid sequence of selected from the group of SEQ ID. NO 1, SEQ ID NO. 2, SEQ

ID NO. 3, SEQ ID NO. 4 and SEQ ID NO. 5, or (b) an amino acid sequence having at least 80% identity to the amino acid sequence of (a).

The nucleic acid molecule of the invention can be used for constructing expression systems providing appropriate elements for replication of vector within a host cells and expression of the DNA which can then be used for the expression of a polypeptide having VWF cleaving protease activity according to the present invention. The nucleic acid sequence may be modified to improve expression, such as addition of a Kozak sequence.

The expression vector may comprise, for example, in the direction of transcription, a transcriptional regulatory region and a translational initiation region functional in a host cell, a DNA sequence comprising a polynucleotide expressing a VWF -cp polypeptide according to the present invention and translational and transcriptional termination regions functional in said host cell, wherein expression of the nucleic sequence is regulated by the initiation and termination regions. The expression vector may also contain elements for the replication of the nucleotide. Examples of DNA expression

~ pRO03/ 4TH i vectors are pBPV, pSVL, pRc/CMV, pRc/RSV, myogenic vector systems, pcDNA3 based vector (Invitrogen) or vectors derived from viral systems, for example from vaccinia virus, adenoviruses, adeno-associated virus, herpes viruses, retroviruses or baculo viruses. Suitable mammalian expression vectors usually contain one or more eukaryotic transcription units that are capable of expression in mammalian cells. The transcription unit is comprised of at least a promoter element to mediate transcription of foreign DNA sequences. Suitable promoters for mammalian cells are known in the art and include viral promoters such as that from simian virus 40 (SV40), cytomegalovirus (CMV),

Rous sarcoma virus (RSV), adenovirus (ADV), bovine papilloma virus (BPV) or other promoters selected from the group of methallothionein promoter and B-Actin promoter.

Other promoters known in the art are also applicable for expression.

The expression vector containing the nucleic acid sequence which encodes the vWF-cp polypeptide according to the present invention can be used to transform host cells which then produce the polypeptide. The transformed host cells can be grown in a cell culture system to produce the polypeptide in vitro. The host cells can excrete the polypeptide having vWF protease activity into the cell culture medium from which it can be prepared or the polypeptide can be isolated from the cell lysate.

The expression vector comprising the nucleic acid molecule encoding a polypeptide comprising (a) an amino acid sequence of selected from the group of SEQ ID. NO 1,

SEQ ID NO. 2, SEQ ID NO. 3, SEQ ID NO. 4 and SEQ ID NO. 5, or (b) an amino acid sequence having at least 80% identity to the amino acid sequence of (a) can be transformed or transfected into a host cells for expression of the recombinant polypeptide. Suitable host cells include any cell capable of producing VWF -cp polypeptide after being transformed or transfected. Preferred cells include bacterial cells, yeast, insect cells or animal cells. The host cell may be a cell derived from the body of a mammal, for example fibroblasts, keratinocytes, hematopoietic cells, hepatocytes or myoblasts, which are transformed in vitro with an expression vector system carrying a nucleic acid according to the present invention and re-implanted into the mammal. The polypeptide according to the present invention encoded by said nucleic acid will be synthesized by these cells in vivo and they will exhibit a desired biological activity in the mammal.

Mammalian cell lines available as hosts for expression are known in the art and include many immortalized cell lines available from the American Type Culture Collection (ATCC) . Exemplary mammalian host cells include particularly primate cell lines and rodent cell lines, including transformed cell lines. Preferably for stable integration of the vector DNA, and for subsequent amplification of the integrated vector DNA, both by conventional methods,

Chinese hamster ovary (CHO) cells are employed as a mammalian host cell of choice. Other suitable cell lines include, but are not limited to, Hela cells, baby hamster kidney (BHK) cells, monkey kidney cells (COS-1), human hepatocellular carcinoma cells (e.g., Hep G2), human adenovirus transformed 293 cells, HEK 293cells, SKHep cells, mouse L-929 cells, HaK hamster cell lines, murine 3T3 cells derived from Swiss, Balb—-c or NIH mice and a number of other cell lines. Another suitable mammalian cell line is the CV-1 cell line. Normal diploid cells, cell strains derived from in vitro culture of primary tissue, as well as primary explants, are also suitable. Candidate cells may be genotypically deficient in the selection gene, or may contain a dominantly acting selection gene.

Host cells can be either transformed cells or untransformed cells. The host cells are preferably those expressing furin either naturally or after being genetically engineered to express recombinant furin.

The selection of suitable mammalian host cells and methods for transformation, culture, amplification, screening and product production and purification are known in the art.

The host cell transformed with a vector carrying the

VWF-cp polypeptide en coding nucleic acid may then be cultured under suitable conditions if desired, with amplification introduced genes. Effective conditions include, but are not limited to, appropriate media, bioreactor, temperature, pH and oxygen conditions that permit protein production. The method of this present invention therefore comprises culturing a suitable cell or cell line, which has been transformed with a nucleic acid sequence encoding a amino acid sequence of the vWF-cp polypeptide, the coding sequence under the control of a transcriptional requlatory sequence. The expressed polypeptide is then recovered, isolated and purified from the culture medium if secreted by the cells or from the cell, if expressed intracellularly by appropriate means known to one of skill in the art.

The nucleic acid molecule of the invention or a fragment thereof can be expressed in a eukaryotic or prokaryotic microorganism system, such as fungi, including yeast, or bacteria. Fragments can include truncated forms of the VWF cleaving protease. Examples of truncation include, but are not limited to, N-or C-terminal deletions.

The nucleic acid molecule of invention may also be used to generate transgenic animals, which express said polypeptide in vivo. In one embodiment of this specific application, the transgenic animals may express the vWF -cp polypeptide in endogenous glands, for example in mammary glands from which the said proteins are secreted. In the case of the mammary glands, said vWF protease polypeptide is secreted into the milk of the animals from which said proteins can be prepared. The animals may be mice, cattle, pigs, goats, sheep, rabbits or any other economically useful animal.

The vWF-cp polypeptide of the invention can be used in a method of purification of vWF by providing as a ligand for vWF a vWF-cp polypeptide of the invention, contacting a solution comprising vWE with the vWF-cp polypeptide ligand under conditions whereby vWF is bound to the ligand and recover from said ligand purified vWF. The vWF-cp polypeptide ligand may be bound to a solid carrier.

Furthermore, the vWF-cp polypeptide of the invention can also be used for the development of vWF-cp polypeptide binding molecules using techniques known in the art. The binding molecules can be anti-vWF-cp polypeptide antibodies which can be produced by immunization of an animal with a polypeptide of the invention and isolation of anti-vWF-cp polypeptide antibodies from the animal.

“Antibodies” as used herein includes polyclonal and monoclonal antibodies, chimeric antibodies, single chain, and humanized antibodies, as well as Fab fragments, including the products of an Fab or other immunoglobulin expression library, peptides or peptidomimetics. Monoclonal antibodies can be produced according to methods well known in the art. Other binding molecules can be derivatives of a antibody, such as a single chain antibody, a Fab-~, or

Fab’2-fragment, a chimeric antibody, or a peptide or a peptidomimetic, which can be obtained by known methods such as e.g. the phage display method.

Within the aspect of the invention, a vWF-cp polypeptide binding molecule selected from the group of single chain antibodies, Fab- or Fab‘’2-fragment or polypeptides with vWF protease binding site can be produced by a method, wherein a phage display library is screened for anti-vWF-cp polypeptide binding molecule, the nucleic acid sequence of positive clones is determined and a nucleic acid molecule comprising the sequence is cloned into an expression vector.

The development of the antibodies, antibody derivatives, peptidomimetics or any other molecule which binds vWF-cp polypeptide can be accomplished according methods known to the prior-art (Greer et al. 1994, J. Med. Chem. 37: 1035- 1054; Kemp 1920, Trends Biotechnol. 8: 249-255).

The vWF-cp polypeptide binding molecule of the invention may be used as a ligand to purify vWF-cp. Such a method can be performed by contacting a solution comprising

VAF-cp polypeptide with the vWF-cp polypeptide binding molecule under conditions whereby vWF-cp polypeptide is bound to the binding molecule and recovering purified VWE-

Cp polypeptide by selectively eluting vWF-cp polypeptide from the vWF-cp binding molecule. The vWF-cp binding molecule may be bound to a solid carrier.

The vWF-cp polypeptide binding molecule can be also be used in a method for detection of vWF-cp polypeptide in a sample. Thereby a solution suspected to contain vWF-cp polypeptide is contacted with a vWF-cp polypeptide binding molecule as described above under conditions allowing the formation of a complex of vWF-cp polypeptide/vWF-cp polypeptide binding molecule and detection of the complex.

The vWF-cp polypeptide of the invention can be used, for example, to process plasmatic or recombinantly produced

VWF. Recombinant vWF (r-vWF) can be produced in CHO cells, e.g. according to Fischer et al. (1995. FEBS Lett 375: 259- 262). The r-vWF recovered in this manner is available as a mature VWF and has a singlet structure, i.e. it differs from plasma-derived VWF, which always has a characteristic satellite structure when examined on 2% SDS agarose gels.

US5,854,403 teaches that r-vWF is comprised of multimers with high structural integrity which is retained even after purification and treatment for the inactivation of viruses.

The intact structure of the r-vWF is defined by a result of electrophoretic analysis consisting of multimer bands with an absence of satellite bands. To prepare an r-vWF preparation having a structure more closely corresponding to that of plasma-derived VWF from r-vWF with singlet structure, r-vWF is treated with the VWF protease polypeptide or a composition comprising the vWF-protease polypeptide of the present invention, and optionally metal ions and/or clusterin.

According to one aspect of the invention, the vWF-cp polypeptide can be used for the production of a preparation for the prophylaxis and therapy of diseases that show supranormal vWF content or an increased level of high- molecular weight vWF in patients, such a thromboembolic disease. This can result in thromboses and thromboembolic diseases. For example, thrombotic throbocytic purpura (TTP),

Henoch-Schénlein purpura, preeclampsia, neonatal thrombocytopenia or haemolytic-uremic syndrome. By 10° administering an effective dose of a polypeptide of the invention and having a VWF protease activity, this can lead to reduction of the content of high molecular weight vWF multimers in the patients, resulting in effective therapy of these diseases. The disease can be selected from the thromboembolic disease is thrombotic thrombocytic purpura (TTP), Henoch-Schonlein purpura, preeclampsia, neonatal thrombocytopenia or hemolyticuremic syndrome.

The invention is described in the following examples, without being limited thereto.

Examples

Example 1:

Isolation of vWF-cp polypeptides 1.1. Preparation of an IgG-eTTP-coupled affinity gel. The 1gG-eTTP is isolated by aid of a 20 ml protein A-~

Sepharose® (diameter 1.6 cm) in TBS, pH 7.4. Pheresis plasma of a patient suffering from acquired TTP ("erworbenes" TTP; eTTP), which previously had been assayed for its inhibitor content relative to the vWF-cleaving protease is applied to the column in a volume of 50 ml.

After subsequent rinsing with TBS, pH 7.4, the bound IgGs are step-wise eluted with citrate, 0.1 M, pH 4.0, and . glycine, 0.1 M, pH 2.7. The fractions immediately are brought to a physiological pH by adding Tris, 1.5 M, pH 8.8, and dialysed against TBS, pH 7.4. The Affi-Gel® Hz is coupled according to the producer's instructions with the

IgG-eTTP which had been ished out of the protein A- :

Sepharose® with a pH of 4.0. The column material prepared in this manner first is ished as prescribed, subsequently it is washed 3 times alternatingly with 50 ml of buffer B and 200 ml of buffer A (chapter 1.7). Prior to use, intensive rinsing with buffer A is carried out in each instance. 1.2 First Step

As the starting material, 100 ml of pooled CPD plasma which had come from at least three donors and had been stored at -20°C, is used after centrifuging at 2,500 rpm (1,100g) for 5 min. At a relatively low flow rate (FR: 30 ml/h), the plasma is loaded on a 200 ml chromatographic column with IgG-eTTP Affi-Gel® Hz (hydrazide, diameter 2.6 cm) which had been equilibrated in buffer A. After washing with at least 400 ml of buffer A over night at the same flow rate, a 200 ml desalting gel filtration column (Bio-

Gel® P-6DG, diameter 2.6 cm) and a 10 ml protein G-

Sepharose® (diameter 1.6 cm), which previously also had been rinsed with buffer A, is connected thereto. After the flow rate had been increased to 100 ml/h, the proteins bound to Affi-Gel Hz are eluted directly with 50 ml of buffer B onto the Bio-Gel® P-6DG so as to remove from the proteins the NaSCN that had been in buffer B. The proteins which had been eluted from the desalting column prior to the NaSCN are led through the protein G Sepharose® without interruption, where they are freed from the IgGs. Here, the flow rate is loared to 50 ml/h so as to extend the dwell time of the proteins in the 10 ml column. For regeneration, the protein G-Sepharose® is shortly washed with buffer C, and the eluted IgG fraction is stored for analysis.

The first step is carried out 8 times before the collected fractions which had been frozen at -20°C are pooled and further processed. 1.3 Second Step

The pooled fractions from 8 chromatographies of the first step are diluted 1:1 with H,0 so as to obtain an ionic strength at which the desired proteins would bind to the anion exchange column (High Q Support®). The sample whose volume is from 1,500 to 1,800 ml, depending on the charge used, is checked for its pH and its ionic strength and applied over night at a FR of 90 ml/h through a 50 ml column with Therasorb® (diameter 1.6 cm) onto a 5 ml High

Q Support® (diameter 1.6 cm). Both, Therasorb and High Q

Support® had previously been equilibrated in buffer D.

After washing with approximately 150 ml of buffer D, the

Therasorb is disconnected, and the 25 ml Lentil Lectin

Sepharose® (diameter 1.6 cm) which had been equilibrated in buffer E is connected to follow the High Q Support®. At a FR of 60 ml/h, the proteins bound to High Q Support are immediately eluted with buffer E directly to the Lentil

Lectin-Sepharose®. The proteins which bound to the Lentil

Lectin-Sepharose® can be eluted in two steps with buffers

G and H and canbe collected. The proteins which had remained bound to Therasorb and High Q Support® are washed out with buffer C or buffer F, respectively, and discarded after an analysis.

For regeneration, before being used, the Lentil

Lectin-Sepharose® in each case is rinsed according to the producer's instruction 3 times alternatingly with 20 ml each of buffers I and J, the High Q Support is rinsed successively with 10 ml each of NaOH 1N and NaCl 1M. 1.4 Third Step

The pooled fractions which had been eluted from the

Lentil Lectin-Sepharose® with buffer H are dialysed three times for a total of 4 h, each against 1 1 of buffer D, and again applied to the High Q Support at a flow rate of 60 nl/h. Connected thereinfront is a 5 ml heparin-Sepharose (diameter 1.4 cm), which likewise had been equilibrated in buffer D. After the application of the sample, it is rinsed with approximately 50 ml of buffer D, the heparin-Sepharose is disconnected, and a 500 ml Sephacryl® S-300 HR (diameter 2.6 cm), which had been equilibrated in buffer IL, is connected thereto. The proteins bound to High Q Support are directly eluted to the gel filtration column with 10 ml of buffer K. The exclusion chromatography is effected at a flow rate of 42 ml/h, and the fractions are collected at 7 ml each. The proteins which are more strongly bound to

High Q Support® are again eluted with buffer F, those which remained adhered to the heparin-Sepharose, with buffer K. 1.5 Fourth Step

The pool of the active fractions from the third step is applied without treatment at a FR of 10 ml/h to a 1 ml anti-o,-macroglobulin column (flow rate0.7 cm) which had been equilibrated in buffer L. The anti-a,-macroglobulin column is prepared by immobilization according to the instructions, of rabbit-anti-oa,-macroglobulin antibodies at a concentration of 4.9 mg/ml on CNBr-activated

Sepharose. The proteins bound thereon are eluted with NaSCN 3M in buffer L and with buffer C and stored for analysis.

Table 1: List of buffers ris 10 mM

NaCl 0.15 M buffer A Nag-citrate 1M pH 7.4 a acid 0.02%

NaSCN buffer B , 3.0M pH 7.4 in buffer A lyci 0.1M buffer C glycine oH 2.7

Na acid 0.02%

Tris 10mM buffer D H 7.4 purser 0 [rie pe Lo, ris 20mM buffer E NaCl 0.5M pH 7.4 nCl, 1 mM

Tris 10mM buff F H 7.4 purser + [rie pe Ly, or 20mM buffer G a 0.5M oH 7.4 ethyl-o-D- 30mM mannopyranoside i 20m 67. [ - buffer H 2 0.5M

Methyl-a-D- 0.3M mannopyranoside buffer I ris 2 OnaM pH 8.5 r 4 NaCl 0.5M _ 7 Na acetate 2 0mM H 5.5 uter acl 0.5M PR >. ffer K ris 10m H 7.4 er . ou NaCl 0.5M buffer L (TBS) [Xo° 10m H 7.4 utter NaCl 0.15M pH 7 -

Table 2: List of Chromatographic materials atfi-gel hydrazide gel®: for Bio-Rad, Hercules, CA, USA immobilizing specific IgG's applicant's own production anti-o,-macroglobulin column: (see 1.5): rabbit-anti- } uman-0,-macroglobulin isolation of a,-macroglobulin , , antibody on CNBr activated

Sepharose 4B; 4.9 mg/ml

Bio-Gel® P6-DG, medium: gel filtration with exclusion limit [Bio-Rad > 6kDa

CNBr activated Sepharose 4B®: Amersham Pharmacia Biotech, for immobilizing proteins Uppsala, S heparin Sepharose, HITrap® 5ml: affinity chromatography: binds |Amersham Parmacia various proteins

High Q Support®, Macro-Prep: Bio-Rad strong anion exchanger . : .

IgG-eTTP Affi-gel Hz: for applicant's own production binding vWF-protease (see 1.1.): IgG-eTTP on g P : Affi—-gel Hz hydrazide

Lentil Lectin-Sepharose 4B: affinity chromatography: binds |Amersham Pharmacia to sugar residues of proteins protein A Sepharose® CL-4B. :

Amersham Pharmacia binds IgG of type 1, 2 and 4 t a protein G Sepharose® 4FF: \ sham Phar isolation of IgGs of all types ersnd macia

Sephacryl® S-300 HR: gel filtration for MWs 10,000 to Amersham Pharmacia 1,500,000

Therasorb: coupled with sheep- anti-human-JIg-antibodies: isolation of human Serag-Wiessner, Naila, D immunoglobulins l.6 Fifth Step

Alternatively, or in addition to step four, an anti- clusterin column chromatography as a further step can be applied. The samples are prepared identically to the anti- o2-~ macrogluobulin-column using anti-clusterin antibodies. 1.7. SDS-Page reduced/non-reduced

The final preparation from the third step of isolation is electrophoresed on a 1.5 mm-thick SDS-polyacrylamide gel according to Laemmli (1970, Nature, 227: 680-685). A gradient of 4 to 12% polyacrylamide is used for fractionation of proteins. After electrophoresis under non- reducing or reducing conditions (final concentration 65 mmol/l dithiotreitol DTT), the proteins are made visible by silver stain or Commassie blue stain (Fig. 2). Under non-reducing conditions bands having a molecular weight (MW) of about 150 kD, 140 KD, 130 KD and 110 KD are detectable and under reducing conditions of about 180 KD, 170 KD, 160 kD and 120 KD. : 1.8 Determination of vWF protease activity

The different fractions isolated by the purification process as described above are tested for vWF cleaving activity by the method as described by Furlan et al. (1996. Blood 87: 4223-4234).

Example 2:

Amino acid sequencing and amino acid analysis of the VvWE-cp polypeptide

The final protein preparation from the third step of isolation is electrophoresed on a 1.5 mm-thick SDS- polyacrylamide gel according to Laemmli (1970, Nature, 227: 680-685). A gradient of 4 to 12% polyacrylamide is used for fractionation of high molecular weight proteins, and a gradient of 8 to 12% polyacrylamide for low molecular weight proteins. After electrophoresis under non-reducing or reducing conditions (final concentration 65 mmol/l dithiotreitol), the proteins are blotted onto PVDF- membranes and stained for 2 min with 0.25% Coomassie Blue in 45% methanol, 9% acetic acid and 46% H,0. After rinsing with a mixture of 50% methanol, 10% acetic acid and 40%

H;0, the visible protein bands are cut out and analyzed on a Procise-cLC Sequencer (Foster City, CA) at the Chemical

Institute of the University of Bern.

The N-terminal amino acid sequence of polypeptide bands separated by SDS-PAGE of purified vWF-cleaving protease is shown in Table 3.

Table 3: Determination of N-terminal amino acid sequence of

VWE-cp

Molecular Amino Acid sequence weight 350 kDa Ser-Val-Ser~Gly-Lys-Pro-Gln-Tyr-Met- unreduced Val#* 150 kDa unred. Ala-Ala~Gly-Gly-Ile 140 kDa unred. Ala-Ala-Gly-Gly-Ile 130 kDa unred. Ala-Ala-Gly-Gly-Ile 110 kDa unred. Ala-Ala-Gly-Gly-Ile-Leu-His-Leu-Glu 70 kDa unred. Asp/Ser-Gln/Leu-Thr/Met-Val/Pro-

Ser/Phe** 180 kDa reduced }Ala-Ala-Gly-Gly-Tle-Leu-His-Leu-Glu 170 kDa reduced |Ala-Ala-Gly-Gly-Ile 160 kDa reduced |Ala-Ala-Gly-Gly-Ile-Leu-His-

Leu-Glu-Leu-Leu-Val-Ala-Val-Gly 120 kDa reduced |Ala-Ala-Gly-Gly-Ile-Leu-His-Leu-Glu-

Leu~-Leu-Val-Ala-Val-Gly 40 kDa reduced Asp-Gln-Thr~-Val-Ser** * identified as a2-macroglobulin ** jdentified as clusterin

Analysis of the composition of the amino acids is performed from the same sample as used for amino acid sequencing. The protein bands are hydrolyzed in the gas phase over 6 N HCl for 22 hours at 110°C and the amino acids are determined by high-performance liquid chromatography. Four unreduced polypeptide bands from SDS-

PAGE of purified vWF-cp with M, 150, 140, 130, and 110 kDa are analyzed. The results are shown in Tab. 4.

Table 4: Amino acid composition of isolated vWE-cp

Polypeptide

Example 3:

Identification of the vWF-cp gene

The nucleic acid coding sequence of the amino acid sequence of peptide AAGGILHLELLVAVG (SEQ. ID. NO. 2) of the N- terminal 15 residues of the purified plasmatic human vWF-cp is determined and corresponds to the nucleic acid sequence

GCT GCA GGC GGC ATC CTA CAC CTG GAG CTG CTG GTG GCC GTG GGC

(SEQ. ID. No. 9). A database searching in the NCBI GenBank (http://www.ncbi.nlm.nih.gov/) showed the location of the corresponding nucleic acid sequence GCT GCA GGC GGC ATC CTA

CAC CTG GAG CTG CTG GTG GCC GTG GGC (SEQ.ID.No. 9) on chromosome 9 clone RP11-244N20 (AL158826, GI11544459). Thus the nucleotide sequence from base 150001 to 185911 is screened for potential exons. Consecutive overlapping genome-segments with various lengths (1500 bases-5000 bases) are analysed using search engines that are queried via the internet-explorer. The genomic sequence segments, its translations and the results of the search are managed using the “Vectors NTI Suitel v.5.2’ computer-program ({Informax Inc., USA). The sequence of RP11-244N20 has a size of approximately 185 kb and the identified nucleic acid sequence starts at position 156.653. Use of an exon search program (Grail, http://compbio.ornl.gov/Grail-1.3) allowed identification of about 30 putative exons upstream and downstream of position 156.653. The first four exons of the search are translated into the corresponding amino acid sequence and these sequences are searched for homologies.

This search revealed that each sequence displays high homology with the amino acid sequence of the family of human disintegrin and metalloproteinases with thrombospondin motifs (ADAM-TS) .

In order to connect the putative exons poly-A —-RNA from liver is reverse transcribed and the cDNA is then PCR amplified with primers specific for some of the putative exons (Table 5). The PCR products of primers 6142 (SEQ.ID.No.16)~-6277 (SEQ.ID.No.17), 6142 (SEQ.ID.No.16)- 6546 (SEQ.ID.No.18), 6351 (SEQ.ID.No. 19)-6546 (SEQ.ID.No. 18), 6278 (SEQ.ID.No. 21)-6407 (SEQ.ID.No. 20), 6346 : (SEQ.ID.No. 23)-6395 (SEQ.ID.No. 24) and 6406 (SEQ.ID.No. 25)-6506 (SEQ.ID.No. 26) (derived from putative exons 1-6, 3-11, 6-11, 10-14, 13-16, 14-23, respectively) revealed bands of the expected size. After sequencing an open reading frame from exon 1 to exon 23 located near to the 3/ end of clone RP11-244N20 can be identified. The 3’ end of the cDNA sequence 1s examined by PCR amplification of the

CDNA using forward primer 6548 (SEQ.ID.No. 27) of exon 22 and the specific MC18 sequence of the RT primer spdT. The resulting fragment of a size approximately to 1.8 kb is sequenced and after database search the 3’ part of the new cDNA sequence can be located on region g34 (AC002325) on chromosome 9.

The unknown sequence of the gene at the 5’ end is identified by 5’ -RACE and sequencing of the resulting PCR product revealed two additional exons. None of the next five exons upstream of exon 1-2 can be connected by PCR to the already known cDNA sequence. All together 29 exons with a cDNA size of 4.6 kb are found. The vWF -cleaving protease gene spans approximately 37 kb, a schematic drawing of the localization of the exons is shown in Figure 4. The complete cDNA sequence is depicted in Figure 5.

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Determination of Similarities to Other Proteins

The SMART program (http://smart.eml-heidelberg.de) is searched for domain architectures of the protease and identified protein modules including a signal peptide with its transmembrane region, a furin cleavage site, a metalloprotease domain, i.e. a Zn -protease catalytic site consensus sequence (HEXXH) , a Met turn, a disintegrin domain, a cysteine -rich region, and thrombospondin type 1 (TSP-1) motifs (Figure 6).

These modules are also shared by members of the novel ADAMTS (for a disintegrin and metalloprotease with thrombospondin type 1 motif) metalloproteinase family (Tang 1999. FEBS Lett. 445:223-225; Tang 2001. Int. J. Biochem. Cell Biol. 33:33-44).

The amino acid sequence of the VWF cleaving protease is aligned with all the human ADAMTS protein sequences, which are listed by the human genome organization (HUGO) gene nomenclature committee http://www.gene.ucl.ac.uk/nomenclature/genefamily/adamts. html

A schematic representation of the domains is shown in Figure 6. In contrast to the ADAMTS proteins our putative new member of this family lacks a prodomain. However, examination of the amino acid sequences of the next five putative exons upstream of exon 1-2 showed no sequence homologies to ADAMTS proteins.

In addition, no signal peptide sequences can be found on these exons. We thus named the VWF -cleaving protease ADAMTS13.

The deduced amino acid sequence is also compared with the EMBL protein database (http://ww2.ebi.ac.uk). Exons 9 to 16 correspond partly to an already submitted hypothetical 39.9 kDa protein located on chromosome 9 and termed open reading frame 8 (COORF8, XM 005647, GI12735207). In addition exon 26 to 29 correspond to the hypothethical protein DKFZpA34C2322 (NM032252, GI14149974) (Wiemann et al. 2001. Genome Res. 11: 422-435).

Example 4:

Affinity purification of von Willebrand Factor (vWF)

The peptide with the sequence AAGGILHLELLV (SEQ.ID.No. 1) is synthesized on a solid-phase support following the method of Barany et al. (1980. Solid-phase Peptide

Synthesis. In: The Peptides. vol. 2 ,Gross, E. and

Meienhofer, J. (eds.) Academic, New York, SEITEN). After cleavage and de-protection of the peptide, the peptide is purified by ion-exchange chromatography. The peptide is characterized by reverse phase HPLC on a C8 silica column with gradient elution in trifluoro acetic acid with acetonitrile. The peptide showed no major byproducts.

The peptide is solubilized in a concentration of 5 mg/mL in 0.1 molar phosphate buffer pH 7.5 and incubated with a pre-activated gel suitable for affinity chromatography (Actigel, ALD-Superflow, Sterogene). Prior to coupling of the peptide to the gel the pre-activated matrix is excessively washed with the same phosphate buffer. One volume of the pre-washed gel is then mixed with one volume of the peptide solution to be immobilized and subsequently 0.1 volume portions of a solution of 0.1 molar cyanoborohydride (NaCNBH3;) in 0.1 molar phosphate buffer pH 7.5. The gel is suspended in this solution and shaked for 15 hours at room temperature. Subsequently the gel is washed on a sinter funnel with a 10-fold volume of the phosphate buffer containing 150 mmolar NaCl and with 5 volumes of the phosphate buffer containing 2 molar NaCl.

Then the gel is equilibrated with an access of 0.1 molar phosphate buffer pH 7.0. :

The gel is then transferred into a chromatographic column having a dimension of diameter to gel bed height of

1:4. By determining the peptide concentration the solution of the incubation supernatant after separation from the gel and the washing solutions the amount of peptide coupled to the affinity matrix is calculated. The coupling rate is 85%.

The gel is subsequently used to purify vWF from a

Factor VIII (FVIII)/vWF complex. A FVIII/VWF complex concentrate is produced according to US 4,814,435 containing vWF in a concentration of 260 U vWF:Ag/ml and a specific activity of 13.5 U vWF:Ag/mg Protein. The concentrate is diluted with 20 mM phosphate buffer pH 7.0 to a final VWF concentration of 6 U vWF:Ag/mL. A volume of 20 ml of this solution is subjected to the affinity column with immobilized peptide described above. After washing the column with 10 ml of the phosphate buffer the VWF specifically bound to the peptide ligand is eluted by a linear gradient from 0-2 mol/l NaCl in phosphate buffer at a flow rate of 1 ml / minute. Fractions of 1 ml are collected and their optical density is determined at : 280 nm. All fractions are measured for their content of VWF antigen determined by a specific ELISA method (Asserachrom vWF, Boehringer, Mannheim). Measurement showed a specific peak of vWF eluting from the peptide at a NaCl concentration of 100 mmol/l, while most of the protein measured by UV-absorption eluted prior to the vWF fraction with the washing buffer. The vWF containing fractions are pooled and measured for VWF activity. The vWF in this pool had a specific activity of 95 U vWF/mg protein and is essentially free from other proteins.

Cm

Example 5:

Anti-viF-cp polypeptide antibodies ,

The peptide with the sequence AAGGILHLELLV (SEQ.ID.No. 1) is synthesized and purified as described in example 4.

The peptide is then used to immunize 3 months old BALB/c mice with the following protocol: A primary subcutaneous injection of 100 pg peptide antigen emulsified in Freund’s complete adjuvant in 100 pl followed by intra-peritoneal boosts of 100 pg peptide antigen in phosphate buffered saline at monthly intervals.

The anti-peptide titer is tested by routine ELISA method using purified peptide as screening antigen. After the final boost the spleens are taken from the mice for cell fusion. Cell fusion is carried out according to a standard protocol originally described by Kdhler et al. (1975, Nature 256:495-497). Anti-peptide antibodies producing hybridoma cell lines are screened by standard techniques with the purified peptide as screening antigen essentially based on a conventional ELISA methodology.

After cloning a cell line can be isolated with a high expression level of an antibody specific for the screening peptide with the sequence AAGGILHLELLV. This cell line is cultured on serum-free culture medium and grown to high density. The supernatant of the cell culture is harvested by centrifugation to remove cells and the monoclonal antibody containing supernatant is concentrated by ultra- diafiltration and conditioned for further use.

The monoclonal antibody obtained had a high selectivity for the vWF cleaving protease as described by

Furlan et al. (1996, Blood 87: 4223-4234). This monoclonal antibody is immobilized to a polystyrene ELISA plate in a carbonate/bi-carbonate buffer, 0.05 molar, pH 9.6, at a concentration of 5 pg immunoglobuline/ml overnight (16 hours) at 4°C, with each 100 pl of coating solution per well. The coating solution is removed from the wells and replaced by a solution of bovine serum albumin (BSA) at a concentration of 100 pg/ml at a volume of 100 ul per well, for 2 hours. The BSA solution is removed and the wells are washed with phosphate buffered saline. The pre-coated plates are then incubated with either samples of platelet poor plasma from healthy human plasma donors or platelet poor plasma from patients with an unclear diagnosis of either thrombotic thrombocytopenic purpura (TTP) or hemolytic uremic syndrome (HUS). After incubation of the plasma samples with the antibody coated ELISA plates as in a routine sandwich ELISA system, after 3 hours the plasma is removed from the wells. Wells are washed with phosphate buffered saline and incubated with the monoclonal antibody directed against the peptide with the sequence

AAGGILHLELLV, conjugated with horse radish peroxidase following the method of Wilson et al. (1978. In:

Immunofluorescence and Related Staining Technigues; Knapp,

W. Holubar, K. and Wick, G (eds.), Elsevier/North Holland,

Amsterdam, 215) and detected by the OPT reagent as described by Cathy et al, (1989. ELISA and related enzyme immunoassays, In: Antibodies II a practical approach. Cathy

D (ed.), IRL Press Eynsham Oxford England, 97).

Based on the level of the samples from the healthy human plasma donors a normal range is established. Plasmas from patients with HUS had a vWF protease activity equivalent to healthy humans while patients with TTP had a decreased protease activity as confirmed by an assay based on a different assay principle as described in WO 00/50904.

Example 6:

Cloning of the VWF cleaving protease gene

Human salivary gland poly A+ RNA is purchased from

Clontech. First strand cDNA is obtained using Expand reverse transcriptase (Hoffmann La Roche) and oligo d(T) primer according to the manufacturer’s instructions. PCR is performed using 5’ CGGCGGGATCCTACACCTGG 3’ (SEQ.ID.NO. 10) and 5’ AATGGTGACTCCCAGGTCGA 3’ (SEQ.ID.NO. 11) as primers with 10 ng of salivary gland cDNA as template and 10 U of

Hot Star Taq polymerase (Qiagen). The thermal cycling parameters are an initial incubation at 94° C for 15 minutes followed by 45 cycles of 94° C (50 sec), 50° C (50 sec), 72° C (2 min). PCR products are directly sequenced in both directions using the BigDye Terminator Cycle

Sequencing Ready Reaction Kit (PerkinElmer Life Science).

The obtained DNA sequence is used to scan the genomic data base using BLAST (basic local alignment search tool) programs and matched to the chromosome 9 clone RP11-224N20.

DNA sequence is translated to amino acids sequence using

ExPASy proteomic tools. The DNA and translated amino acid sequence corresponding to 4 putative exons of chromosome 9g34 is shown in Fig. 5.

RT-PCR fragments encompassing either the pre- prosequence or the mature domains of the vWF cleaving protease are cloned into vector pDrive (Qiagen) by PCR cloning. For amplification of mature vWF-cp the primer #6601 (5' -AGCGGTCTCTATGGCTGCAGGCGGCATCCTACACC-3") (SEQ.ID.

NO. 30) and #6617 (5'-AGCCTCGAGCTGGCCAGACACGGAACAAAT-3") (SEQ.ID.NO. 31) are used. The resulting DNA-fragment is ligated to the T-overlaps of vector pDrive. The construct comprising mature vWF-cp is called pFP H251/8. For amplification of pre-prosequence of vWF-cp the primer

#66128 (5 -GGCGAATTCATGCACCAGCGTCACCCCCG- 37} (SEQ. ID. NO. 32) and #6787 (5’-ACAGCATTAAACTAAGCCGCC-3") (SEQ.ID.NO. 33) are used. The resulting DNA-~fragment is inserted into vector pDrive. The resulting construct is called pFP H262- 35/14.

Example 7

Expression of vWF cleaving protease

The eukaryotic expression vector pcDNA3.1(+) (Invitrogen) is used for the expression of the full-length vWF cleaving protease (VWF-cp) under control of the human CMV promoter.

A 4.12 kB EcoRI/XhoI fragment is excised from the plasmid pPFP H251/8, the fragment encompassing the cDNA sequence encoding the mature vWF-cp from nucleotide nt 223 to 4284 (without pre-pro-sequence from nt 1 to nt 222) and inserted into the EcoRI/Xhol sites of pcDNA3.1(+). To complete the 5’ —end of the cDNA to add the leader and propeptide sequence, a PCR is performed using plasmid pFP H262-35/14 which contains the cDNA sequence of vWF-cp from nt -10 (10 nt uptstream from start codon ATG) to nt +824 in vector pDrive (Qiagen) as template and direct primer 6839 (5’-~

GATCGAATTCGCCGGCCACCATGCACCAGCGTCACCC CCG- 37) (SEQ.ID.NO. 34), harbouring the Kozak consensus sequence (underlined) for the optimal context for the recognition of the start codon, and reverse primer 3113 (5’'- CGGATRACAATTTCACACAGG- 37) (SEQ.ID.NO. 35), which binds in the lacZ region of pDrive vector. PCR is accomplished under standard reaction conditions using HotStar DNA polymerase (Qiagen) and Q- solution (Qiagen). The amplified fragment comprising nt -10 to +824 is cut with EcoRI and Ascl and used to replace the

EcoRI/AscI fragment of the incomplete clone containing only the mature sequence of vWF-cp. The latter construct encoding the complete sequence of vWWF-cp called pCMV-vWEFcp is further used for transfection and expression studies in mammalian cells.

For expression of vWF-cp, SKHep cells (ATCC) cells are transiently transfected with plasmid pCMV-vWFcp and, in parallel as a control with parental vector cDNA3.1 (+), using Lipofectamine 2000 (Life Technologies, Inc).

Transfected cells are cultivated under standard conditions in DMEM/HAM’s F12(1:1) medium (GIBCO) with 10% fetal calf serum, at a temperature of 37°C and 5% CO». vWF-cp expression is analysed by Western blot, whereby samples of conditioned medium and cell harvest are subjected to SDS-PAGE on a 4%stacking/6% separation gel and Western- blot analysis is performed using anti-vWF-cp TTP patient plasma containing polyclonal anti-vWF-cp antibodies and goat-anti-hu-IgG (Fab-specific AB, SIGMA). VWF-cp specific: bands are visualized by BCIP/NBT detection.

VWEF-cp could be detected in sample of the cell lysate and seems to be mainly cell-associated. The results of the

Westernblot analysis is shown in Figure 7, showing specific protein band of vWF-cp at about molecular weight of about 170kD reacting with patient sera.

The cell lysate of the vWF-cp expressing cells are further tested for vWF-cp activity according to the method as described by Furlan et al. (1996. Blood 87: 4235-4244) and

VWF multimer analysis is performed in 1% SDS-agarose gel as described by Ruggeri et al. (1981. Blood 57: 1140-1143)

(Fig. 8). The biological activity of the vWF-cp expressed in mammalian cells could be clearly shown as high molecular welght VWF is degradated to vWF molecules having lower molecular weight (Fig. 8, lane 5).

Claims (24)

820037 4741 Claims:

1. A VWF-cp polypeptide comprising (a) an amino acid sequence selected from the group of SEQ ID. NO 1, SEQ ID NO. 2, SEQ ID NO. 3, SEQ ID NO. 4 and SEQ ID NO. 5, or (b) an amino acid sequence having at least 80% identity to the amino acid sequence of (a).

2. The polypeptide according to claim 1 encoding a polypeptide having an amino sequence as shown in Fig. 5 or a partial sequence of at least 12 amino acids thereof."

3. The polypeptide according to claim 1 or 2 having a vWF-cp activity.

4, The polypeptide according to any of the claims 1- 3, wherein said polypeptide retains vWF cleaving protease activity in the presence of serine protease inhibitor and a calpain protease inhibitor.

5. An isolated polypeptide comprising an amino acid sequence having at least 80% identity to the amino acid sequence selected from the group of SEQ ID. NO 1, SEQ ID NO. 2, SEQ ID NO. 3, SEQ ID NO. 4 and SEQ ID : NO. 5.

6. An isolated polypeptide comprising an amino acid sequence selected from the group of SEQ ID. NO 1, SEQ ID NO. 2, SEQ ID NO. 3, SEQ ID NO. 4 and SEQ ID NO. 5.

7. A substantially pure vWF -cp polypeptide selected from the group of a polypeptide comprising (a) an amino acid sequence selected from the group of SEQ ID. NO 1, SEQ ID NO. 2, SEQ ID NO. 3, SEQ ID NO. 4 and SEQ ID NO. 5, or (b) an amino acid sequence having at least 80% identity to the amino acid sequence of (a).

B. A substantially pure vWF -cp polypeptide according to claim 7, wherein said polypeptide exhibiting an apparent molecular weight of about 180 KD, 170 kD, 160 kD or 120 KD in SDS-PAGE analysis under reducing conditions.

9. A substantially pure VWF -cp polypeptide according to claim 7, wherein said polypeptide exhibiting an apparent molecular wight of about 150 KD, 140 kD, 130 kD or 110 KD in SDS-PAGE analysis under non-reducing conditions.

10. A composition comprising a polypeptide according to any of the claims 1 - 9.

11. A composition according to claim 10 further comprising a divalent metal ion selected from the group of ca?', sr?*, Ba?' and Mg.

12. A composition according to claim 10 or 11 comprising clusterin or an analog or derivative thereof having clusterin activity.

13. A nucleic acid molecule comprising a nucleic acid sequence encoding a vWF-cp polypeptide according to any of the claims 1 to 7.

14. The nucleic acid molecule according to claim 13 encoding a vWF-cp polypeptide as shown in Fig. 5 or a partial sequence thereof.

15. An expression vector comprising a nucleic acid molecule according to claim 13.

16. A host cell comprising an expression vector according to claim 15.

17. A method for production of a vWF-cp protease polypeptide comprising the steps of - growing a host cell according to claim 16 in a nutrient medium under conditions to express said polypeptide - harvesting said polypeptide expressed and ~ isolating said polypeptide.

18. A method of purification of VWF comprising the steps of - providing as a ligand a vWF-cp polypeptide according to any of the claims 1 to 7, - contacting a solution comprising vWF with said polypeptide ligand under conditions whereby vWF is bound to said ligand and - recovering from said ligand purified vWF.

19. A method for production of anti-vWF cp polypeptide antibodies wherein an animal is immunized with a vWF-cp polypeptide according to any of the claims 1 to 7 and anti-vWF-cp polypeptide antibodies are isolated from said animal.

20. A vWF-cp polypeptide binding molecule selected from the group of antibodies, single chain antibodies, Fab- or Fab’2-fragment, peptide or polypeptides with vWF protease binding site, obtainable by a method wherein a phage display library is screened for anti-vWF-cp polypeptide binding molecule, the nucleic acid sequence of positive clones are determined and a nucleic acid molecule comprising the sequence is cloned into an expression vector.

21. A method for purification of VWF ~cp polypeptide comprising the step of contacting a solution comprising vWF -cp polypeptide with vWF protease polypeptide binding molecule according to claim 20, under conditions whereby vWF -cp polypeptide is bound to said vWF -cp polypeptide binding molecule, selectively eluting vWF -cp polypeptide from said binding molecule and recovering purified vWF.

22. A method for detection of vWF -cp polypeptide in a sample, wherein a solution suspected to contain vWF - cp is contacted with a vWF-cp polypeptide binding molecule according to claim 20, to allow the formation of an VWF -cp polypeptide/ binding molecule complex and detection said complex.

23. Use of a vWF-cp polypeptide according to any of the claims 1 to 7 for the production of a preparation for prophylaxis and therapy of thrombosis and thromboembolic disease.

24. Use according to claim 23, wherein the thromboembolic disease is thrombotic thrombocytic purpura (TTP), Henoch-Schonlein purpura, preeclampsia, neonatal thrombocytopenia or hemeclyticuremic syndrome.