WO2019183639A1 - Inhibition of allergic reaction to peanut allergen using an il-33 inhibitor - Google Patents

Inhibition of allergic reaction to peanut allergen using an il-33 inhibitor Download PDF

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Publication number
WO2019183639A1
WO2019183639A1 PCT/US2019/023927 US2019023927W WO2019183639A1 WO 2019183639 A1 WO2019183639 A1 WO 2019183639A1 US 2019023927 W US2019023927 W US 2019023927W WO 2019183639 A1 WO2019183639 A1 WO 2019183639A1
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inhibitor
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patient
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PCT/US2019/023927
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French (fr)
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Marco Londei
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Anaptysbio, Inc.
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/24Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against cytokines, lymphokines or interferons
    • C07K16/244Interleukins [IL]
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders
    • A61P37/08Antiallergic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/505Medicinal preparations containing antigens or antibodies comprising antibodies

Definitions

  • IgE immunoglobulin E
  • peanut protein-specific IgE have been described in peanut allergy patients.
  • Current therapy involves education around the avoidance of peanuts in foods, which can be problematic given the wide and frequently hidden use of peanut as a food ingredient.
  • an avoidance approach does not represent a true“therapy.”
  • Anaphylaxis presents in a significant proportion of peanut allegic individuals and in the most severe rection patients might be hospitalized and if not properly and raipidly treated might die. In these cases the prompt recognition and treatment of anaphylactic reactions must happen as soon as they occur.
  • the only effective treatment for anaphylaxis is intramuscular epinephrine (EpiPen) administration, whilst oxygen, nebulized albuterol, systemic corticosteroids and histamine Hl and/or H2 receptor antagonists can help alleviate secondary symptoms.
  • Immunotherapeutic approaches mainly based on antigen-specific (i.e., peanut) desensitization, are being explored to find an effective treatment for this life-threatening allergy.
  • Other strategies are based on antigen desensitization, whereby pathogenic antigen specific T cells are re-educated after a chronic and prolonged challenge with the triggering
  • the method comprises administering to the patient about 50-1000 mg of an IL-33 inhibitor not more than once every 14 days (e.g., not more than once every 30 days, not more than once every 60 days, or not more than once every 90 days).
  • the method comprises administering to the patient an IL-33 inhibitor, wherein the patient exhibits a moderate to severe allergic reaction within 24 hours of oral administration of 2000 mg or less of peanut protein.
  • the invention provides a method for inhibiting or preventing an allergic reaction to peanut allergen (peanut allergy or peanut allergic reaction) in a patient.
  • peanut allergy or peanut allergic reaction
  • Clinical manifestations of a peanut allergic reaction include, but are not limited to, rash, eczema, atopic dermatitis, hives, urticaria, angiodedma, asthma, rhinitis, wheezing, sneezing, dyspnea, swelling of the airways, shortness of breath, other respiratory symptoms, abdominal pain, cramping, nausea, vomiting, diarrhea, melena, tachycardia, hypotension, syncope, seizures, and anaphylactic shock.
  • Methods of diagnosing peanut allergy include, for example, elimination diets, oral food challenge with a suspected allergen, skin prick tests, detection of allergen-specific immunoglobulins (e.g.
  • Allergic response may be defined by increased level of serum IgE or increased expression and secretion of IL-9 compared to the levels in a negative control (e.g., serum levels of a normal, non-diseased subject of the same type, known to be in a non-allergic state, or of a given individual before contacted with a particular allergen), and/or clinical manifestation of anaphylactic shock.
  • a negative control e.g., serum levels of a normal, non-diseased subject of the same type, known to be in a non-allergic state, or of a given individual before contacted with a particular allergen
  • the method of inhibiting or preventing an allergic reaction to peanut allergen comprises administering to a patient with a peanut allergy about about 50-1000 mg of an IL-33 inhibitor not more than once every 14 days or once every 30 days (e.g., not more than once every 60 days or not more than once every 90 days).
  • the dose of IL-33 inhibitor is about 50 mg or more, such as about 60 mg or more, about 70 mg or more, about 80 mg or more, about 90 mg or more, about 100 mg or more, about 110 mg or more, about 120 mg or more, or even about 130 mg or more (e.g., about 200 mg or more, or 250 mg or more).
  • the dose of IL-33 inhibitor is about 1000 mg or less, such as about 800 mg or less, about 600 mg or less, about 500 mg or less, such as about 450 mg. or less, about 400 mg or less, about 350 mg or less, about 300 mg or less, about 250 mg or less, or about 200 mg or less. In a particular embodiment, the dose is about 300 mg, about 350 mg, about 200 mg, or about 150 mg. In some embodiements, the dose is a single dose in the stated amount. [0012] The method allows for relatively infrequent dosing on a schedule of not more than once every 14 days, 21 days, or 30 days. In some embodidemnts, an even longer interval can be used (e.g., not more than once every 45 days, 60 days, 90 days, or 120 days).
  • IL-33 is a preformed cytokine, which is predominantly present in cells with barrier function, such as endothelial and epithelial cells. It is released rapidly upon allergen, pathogen, or environmental agent challenge, thus acting as a primary and initial trigger of Th2 inflammatory responses.
  • IL-33 pleiotropic functions expand to the orchestration of immune responses by affecting pathogenic Th2 T cells to the magnification of anpylatic responses via IL-33 direct activity on mast cells and bashopils . Therefore, it is believed that IL-33 inhibition controls, at different stages, pathogenic allergic peanut allergic response. IL-33 inhibtion could also benefit peanut allergic patients who present with concominant food allergies (i.e. nuts), or with other atopic disorders such as atopic dermatitis or asthma, which are often present in peanut (food) allergy patients. Therefore IL-33 inhbition would represent an holistic therapeutic approach for diseases that share this patoghenic cascade further helping peanut (food) allergy patients.
  • the method provided herein is believed to be useful for any human patient who exhibits a peanut allergy, but is believed to be particularly useful for patients who present with moderate to severe peanut allergies.
  • a patient is considerd to have a moderate to severe peanut allergy if they exhibt the onset of moderate to severe symptoms of an allergic reaction within 24 hours (e.g., within 12 hours, within 6 hours, within 3 hours, within 1 hour, or even within 30 minutes) of ingesting up to about 2000 mg of peanut protein (e.g., ingesting about 2000 mg or less peanut protein, about 1000 mg or less peanut protein, about 500 mg or less peanut protien, such as about 400 mg or less of peanut protein, about 300 mg or less of peanut protein, about 200 mg or less of peanut protein, about 100 mg or less of peanut protein, about 50 mg or less peanut protein, or about 25 mg or less peanut protein).
  • Peanut protein can be administered as a single dose, or as cumulative doses totaling the above stated amounts.
  • Oral food challenge according to PRACTALL guidelines is known in the art (e.g., Sampson et al, J. Allergy Clin. Immunol., 130(6): 1260-1274 (2012)) and is generally perfomed by having the patient ingest incremental portions (e.g., about 10 or more mg, about 25 or more mg, about 50 or more mg, or about 100 or more mg) of peanut protein or, if applicable, placebo up to a given maximum amount (e.g. about 500 mg, about 10000 mg, about 2000 mg, or other amount as described above) on a predetermined schedule, such as at 15-, 20-, or 30-minute intervals.
  • incremental portions e.g., about 10 or more mg, about 25 or more mg, about 50 or more mg, or about 100 or more mg
  • placebo e.g. about 500 mg, about 10000 mg, about 2000 mg, or other amount as described above
  • Moderate to severe allergic symptoms are determined according to PRACTALL guidelines (e.g., Sampson et al, J. Allergy Clin. Immunol., 130(6): 1260-1274 (2012)), and includes a patient with one or more symptoms qualifying as moderate or severe according to these guidelines.
  • a patient with moderate or severe allergic reaction includes a patient exhibiting at least one of (i) erythematous rash over at least 10% of the skin, (ii) skin scratching for more than 2 minutes at a time, or scratching severe enough to cause excoriation of the skin; (iii) greater than 3 hives or visible (e.g., 10% or more) lip or face edema or generalized edema; (iv) areas of erythema or generalized erythema; (v) bursts of sneezing (less than 10) or intermittent rubbing of nose and/or eyes, or frequent sniffing or persistent rhinorrhea over a period of 2 hours; (vi) inspiratory and expiratory wheezing; wheezing audible without stethoscope; and/or use of accessory muscles when breathing; (vii) hoarseness, repeated dry cough, or stridor; (viii) repeated complaints of nausea or pain with normal activity, or GI
  • the method of the method of inhibiting or preventing an allergic reaction to peanut allergen comprises administering an IL-33 inhibitor, wherein the patient exhibits a moderate to severe allergic reaction within 24 hours of oral administration of 2000 mg or less of peanut protein, or other amount as described above.
  • the method can, therefore, comprise selecting a patient having moderate to severe peanut allergy prior to administration of the IL-33 inhibitor.
  • the selection can be peformed, for instance, by orally administering up to 2000 mg of peanut protein (or other amount as described above) to the patient and selecting the patient for administration of the IL-33 inhibitor if the patient exhibits a moderate to severe allergic reaction within 24 hours.
  • Other elements of the method are as described with respect to the other aspects of the invention.
  • the treatment with the IL-33 inhibitor will reduce the degree or severeity of the patient’s allergic reaction to peanut protein.
  • the patient exhibits a moderate to severe allergic reaction within 24 hours after oral administration of a dose of peanut protein prior to administration of the IL-33 inhibitor, and within 30 days after administration of the IL-33 inhibitor (or even within 21 days, 14 days, or 7 days), the patient no longer exhibits a moderate to severe allergic reaction after oral administration of peanut protein in the same amount that caused a moderate to severe allergic reaction in the patient prior to administration of the IL-33 inhibitor.
  • any of the foregoing methods can comprise (a) administering peanut protein to the patient before administration of an IL-33 inhibitor, wherein the patient is selected for IL-33 inhibitor treatment if the patient exhibits a moderate to severe allergic reaction to the peanut protein, and (b) administering a second dose of peanut protein to the patient within 30 days (or within 21 days, 14 days, or 7 days) after administration of the IL-33 inhibitor in the same amount that caused moderate to severe allergic reaction prior to administration of the IL-33 inhibitor , wherein the patient no longer exhibits a moderate to severe allergic reaction to the peanut protein (e.g., exhiibts no allergic reaction or only mild allergic symptoms within 24 hours after administration of the peanut protein).
  • a moderate to severe allergic reaction to the peanut protein e.g., exhiibts no allergic reaction or only mild allergic symptoms within 24 hours after administration of the peanut protein.
  • IL-33 also known as nuclear factor (NF) in high endothelial venules (NF-HEV)
  • NF-HEV nuclear factor
  • IL-33 is a cytokine of the IL-l family, which also includes the inflammatory cytokines IL-la, IL- 1b, and IL-l 8.
  • IL-33 has been shown to signal via the ST2 receptor and the IL1RAP receptor.
  • IL-33 is expressed broadly in various tissues, including stomach, lung, spinal cord, brain, and skin, as well as in cells, including smooth muscle cells and epithelial cells lining bronchus and small airways.
  • IL-33 expression is induced by I ⁇ -1b and tumor necrosis factor- a (TNF-a) in lung and dermal fibroblasts and, to a lesser extent, by macrophage activation.
  • IL-33 treatment has been shown to induce T-helper (Th) type 2 responses in mice as indicated by an increase in Th2 cytokine production and serum immunoglobulin.
  • Th T-helper
  • Systemic treatment of mice with IL-33 results in pathologic changes in the lung and the digestive tract (see, e.g., Choi et al, Blood, 114(14): 3117-3126 (2009); and Yagami et al, J. Immunology, 185(10): 5743-5750 (2010)).
  • IL-33 is produced as a 30-kDa precursor protein that is cleaved in vitro by caspase-l, releasing the mature l8-kDa form (see, e.g., Schmitz et al., Immunity, 23(5): 479- 490(2005)). Upon binding to the ST2 receptor, IL-33 promotes the activation of nuclear factor (NF)-KB and mitogen-activated protein kinase (MAPK), leading to increased transcription of Th2 cytokines (Schmitz et al, supra).
  • NF nuclear factor
  • MAPK mitogen-activated protein kinase
  • the IL-33 inhibitor can be a molecule that inhibits IL-33 protein expression (e.g., an antisense or siRNA).
  • the IL-33 inhibitor can be a molecule that blocks the binding of IL-33 to receptors ST2 and IL1RAP.
  • the IL-33 inhibitor can be an isolated or purified epitope of IL-33 which blocks binding of IL-33 to its receptor in an indirect or allosteric manner.
  • the IL-33 inhibitor can be an IL-33 binding agent, which can be any substance capable of binding or interacting with IL-33 and affecting the biological activity thereof.
  • the IL-33-binding agent can bind an epitope of IL-33 which blocks the binding of IL-33 to receptors ST2 (also known as IL1RL1) and/or IL-l Receptor Accessory Protein (IL1RAP) and inhibits IL-33 mediated signaling.
  • an IL-33 binding agent may comprise an IL-33 receptor or fragment thereof.
  • the IL-33 binding agent comprises the IL-33 binding domain of ST2.
  • the IL-33 binding domain of ST2 is fused to a heterologous polypeptide, for example an Fc portion of an immunoglobulin.
  • the IL-33 binding agent also can be an immunoglobulin or antibody antigen-binding antibody fragment thereof, examples of which are described herein.
  • Other inhibitors of IL-33 expression or activity may include, for example, antibodies that block ST2, IL-l RAP, acrolein, artesunate, vitexin, I-Theanine, or vinpocentine.
  • immunoglobulin refers to a protein that is found in blood or other bodily fluids of vertebrates, which is used by the immune system to identify and neutralize foreign objects, such as bacteria and viruses.
  • the polypeptide is “isolated” in that it is removed from its natural environment.
  • an immunoglobulin or antibody is a protein that comprises at least one complementarity determining region (CDR).
  • CDRs form the“hypervariable region” of an antibody, which is responsible for antigen binding (discussed further below).
  • a whole immunoglobulin typically consists of four polypeptides: two identical copies of a heavy (H) chain polypeptide and two identical copies of a light (L) chain polypeptide.
  • Each of the heavy chains contains one N-terminal variable (VH) region and three C-terminal constant (Cn 1. CH2, and CH3) regions, and each light chain contains one N-terminal variable (VL) region and one C- terminal constant (CL) region.
  • the light chains of antibodies can be assigned to one of two distinct types, either kappa (K) or lambda (l), based upon the amino acid sequences of their constant domains.
  • each light chain is linked to a heavy chain by disulphide bonds, and the two heavy chains are linked to each other by disulphide bonds.
  • the light chain variable region is aligned with the variable region of the heavy chain, and the light chain constant region is aligned with the first constant region of the heavy chain.
  • the remaining constant regions of the heavy chains are aligned with each other.
  • variable regions of each pair of light and heavy chains form the antigen binding site of an antibody.
  • the VH and VL regions have the same general structure, with each region comprising four framework (FW or FR) regions.
  • framework region refers to the relatively conserved amino acid sequences within the variable region which are located between the hypervariable or complementary determining regions (CDRs).
  • CDRs hypervariable or complementary determining regions
  • the framework regions form the b sheets that provide the structural framework of the variable region (see, e.g., C.A. Janeway et al. (eds.),
  • the framework regions are connected by three complementarity determining regions (CDRs).
  • CDRs complementarity determining regions
  • the three CDRs known as CDR1, CDR2, and CDR3, form the“hypervariable region” of an antibody, which is responsible for antigen binding.
  • the CDRs form loops connecting, and in some cases comprising part of, the beta-sheet structure formed by the framework regions. While the constant regions of the light and heavy chains are not directly involved in binding of the antibody to an antigen, the constant regions can influence the orientation of the variable regions. The constant regions also exhibit various effector functions, such as participation in antibody-dependent complement-mediated lysis or antibody-dependent cellular toxicity via interactions with effector molecules and cells.
  • Antibodies which bind to IL-33, and components thereof, are known in the art (see, e.g., US 2014/0271658, US 2009/0041718 Al, 2012/0263709 Al, WO2015099175;
  • Anti-IL-33 antibodies also are commercially available from sources such as, for example, Abeam (Cambridge, MA).
  • Antibodies to ST2 or ST2L are disclosed, for example, in US 2014/0004107 and US 9090694.
  • the anti-IL-33 antibody can comrpise an immunoglobulin heavy chain polypeptide that comprises an amino acid sequence of any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217, or an amino acid sequence that is at least 90% identical to any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67- 140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217.
  • the isolated immunoglobulin heavy chain polypeptide comprises, consists of, or consists essentially of an amino acid sequence of any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217.
  • immunoglobulin heavy chain polypeptide consists essentially of an amino acid sequence of any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217
  • additional components can be included in the polypeptide that do not materially affect the polypeptide (e.g., protein moieties such as biotin that facilitate purification or isolation).
  • the immunoglobulin heavy chain polypeptide consists of an amino acid sequence of any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217
  • the polypeptide does not comprise any additional components (i.e., components that are not endogenous to the inventive immunoglobulin heavy chain polypeptide).
  • the anti-IL-33 antibody can comprise at least the CDR regions of any of the foregoing heavy chain immunoglobulin sequences, or other fragment thereof comprising the CDR regions.
  • CDR regions of the heavy chain can be determined according to any available numbering system, such as by Rabat, Chothia, Martin (Enhanced Chothia), Gelfand, Honneger's, or IMGT numbering systems (Wu et al, J Exp Med. (1970) 132:211-50; Chothia et al., J Mol Biol. (1987) 196:901-17; Abhinandan et al., Mol Immunol. (2008) 45:3832-9; Gelfand et al. J Comput Biol. (1998) 5:467-77; Honegger et al, JMol Biol. (2001) 309:657-70; Lefranc, Immunol Today (1997) 18:509).
  • the immunoglobulin heavy chain polypeptide can comprise an amino acid sequence that is at least 90% identical (e.g., at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% identical) to any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, or SEQ ID NOs: 206-217.
  • Nucleic acid or amino acid sequence“identity,” as described herein, can be determined by comparing a nucleic acid or amino acid sequence of interest to a reference nucleic acid or amino acid sequence.
  • the percent identity is the number of nucleotides or amino acid residues that are the same (i.e., that are identical) as between the sequence of interest and the reference sequence divided by the length of the longest sequence (i.e., the length of either the sequence of interest or the reference sequence, whichever is longer).
  • a number of mathematical algorithms for obtaining the optimal alignment and calculating identity between two or more sequences are known and incorporated into a number of available software programs.
  • Such programs include CLUSTAL-W, T-Coffee, and ALIGN (for alignment of nucleic acid and amino acid sequences), BLAST programs (e.g., BLAST 2.1, BL2SEQ, and later versions thereof) and FASTA programs (e.g., FASTA3x, FASTM, and SSEARCH) (for sequence alignment and sequence similarity searches).
  • Sequence alignment algorithms also are disclosed in, for example, Altschul et al, J. Molecular Biol., 215(3): 403-410 (1990), Beigert et al., Proc. Natl. Acad. Sci. USA, 106(10): 3770-3775 (2009), Durbin et al., eds., Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids,
  • the anti-IL-33 antibody can comrpise an immunoglobulin light chain polypeptide that comprises an amino acid sequence of any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231, or an amino acid sequence that is at least 90% identical to any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231.
  • the isolated immunoglobulin light chain polypeptide comprises, consists of, or consists essentially of an amino acid sequence of any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231.
  • immunoglobulin light chain polypeptide consists essentially of an amino acid sequence of any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231
  • additional components can be included in the polypeptide that do not materially affect the polypeptide (e.g., protein moieties such as biotin that facilitate purification or isolation).
  • the immunoglobulin light chain polypeptide consists of an amino acid sequence of any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231
  • the polypeptide does not comprise any additional components (i.e., components that are not endogenous to the immunoglobulin light chain polypeptide).
  • the anti-IL-33 antibody can comprise at least the CDR regions of any of the foregoing heavy chain immunoglobulin sequences, or other fragment thereof comprising the CDR regions.
  • the CDR regions of any of the foregoing heavy chain immunoglobulin sequences can be determined according to any available numbering system, such as Rabat, Chothia, Martin (Enhanced Chothia), Gelfand, Honneger's, or IMGT numbering systems (Wu et al, JExpMed. (1970) 132:211-50; Chothia et al, JMol Biol. (1987) 196:901-17;
  • the immunoglobulin light chain polypeptide also can comprise an amino acid sequence that is at least 90% identical (e.g., at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% identical) to any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, or SEQ ID NOs: 218-231.
  • Nucleic acid or amino acid sequence “identity,” as described herein, can be determined using the methods described herein.
  • amino acids of the aforementioned immunoglobulin heavy chain polypeptides and/or light chain polypeptides can be replaced or substituted with a different amino acid.
  • An amino acid“replacement” or“substitution” refers to the replacement of one amino acid at a given position or residue by another amino acid at the same position or residue within a polypeptide sequence.
  • Amino acids are broadly grouped as“aromatic” or“aliphatic.”
  • An aromatic amino acid includes an aromatic ring.
  • “aromatic” amino acids include histidine (H or His), phenylalanine (F or Phe), tyrosine (Y or Tyr), and tryptophan (W or Trp).
  • Non aromatic amino acids are broadly grouped as“aliphatic.”
  • “aliphatic” amino acids include glycine (G or Gly), alanine (A or Ala), valine (V or Val), leucine (L or Leu), isoleucine (I or Ile), methionine (M or Met), serine (S or Ser), threonine (T or Thr), cysteine (C or Cys), proline (P or Pro), glutamic acid (E or Glu), aspartic acid (A or Asp), asparagine (N or Asn), glutamine (Q or Gln), lysine (K or Lys), and arginine (R or Arg).
  • Aliphatic amino acids may be sub-divided into four sub-groups.
  • The“large aliphatic non-polar sub-group” consists of valine, leucine, and isoleucine.
  • The“aliphatic slightly-polar sub-group” consists of methionine, serine, threonine, and cysteine.
  • the “aliphatic polar/charged sub-group” consists of glutamic acid, aspartic acid, asparagine, glutamine, lysine, and arginine.
  • The“small-residue sub-group” consists of glycine and alanine.
  • the group of charged/polar amino acids may be sub-divided into three sub-groups: the“positively-charged sub-group” consisting of lysine and arginine, the“negatively-charged sub-group” consisting of glutamic acid and aspartic acid, and the“polar sub-group” consisting of asparagine and glutamine.
  • Aromatic amino acids may be sub-divided into two sub-groups: the“nitrogen ring sub-group” consisting of histidine and tryptophan and the“phenyl sub-group” consisting of phenylalanine and tyrosine.
  • the amino acid replacement or substitution can be conservative, semi conservative, or non-conservative.
  • the phrase“conservative amino acid substitution” or “conservative mutation” refers to the replacement of one amino acid by another amino acid with a common property.
  • a functional way to define common properties between individual amino acids is to analyze the normalized frequencies of amino acid changes between corresponding proteins of homologous organisms (Schulz and Schirmer, Principles of Protein Structure, Springer-Verlag, New York (1979)). According to such analyses, groups of amino acids may be defined where amino acids within a group exchange preferentially with each other, and therefore resemble each other most in their impact on the overall protein structure (Schulz and Schirmer, supra).
  • conservative amino acid substitutions include substitutions of amino acids within the sub-groups described above, for example, lysine for arginine and vice versa such that a positive charge may be maintained, glutamic acid for aspartic acid and vice versa such that a negative charge may be maintained, serine for threonine such that a free -OH can be maintained, and glutamine for asparagine such that a free -NH2 can be maintained.
  • “Semi-conservative mutations” include amino acid substitutions of amino acids within the same groups listed above, but not within the same sub-group. For example, the substitution of aspartic acid for asparagine, or asparagine for lysine, involves amino acids within the same group, but different sub-groups. “Non-conservative mutations” involve amino acid substitutions between different groups, for example, lysine for tryptophan, or phenylalanine for serine, etc.
  • one or more amino acids can be inserted into the aforementioned immunoglobulin heavy chain polypeptides and/or light chain polypeptides. Any number of any suitable amino acids can be inserted into the amino acid sequence of the immunoglobulin heavy chain polypeptide and/or light chain polypeptide. In this respect, at least one amino acid (e.g., 2 or more, 5 or more, or 10 or more amino acids), but not more than 20 amino acids (e.g., 18 or less, 15 or less, or 12 or less amino acids), can be inserted into the amino acid sequence of the immunoglobulin heavy chain polypeptide and/or light chain polypeptide.
  • at least one amino acid e.g., 2 or more, 5 or more, or 10 or more amino acids
  • 20 amino acids e.g., 18 or less, 15 or less, or 12 or less amino acids
  • 1-10 amino acids are inserted into the amino acid sequence of the immunoglobulin heavy chain polypeptide and/or light chain polypeptide.
  • the amino acid(s) can be inserted into any one of the amino acids
  • the amino acid(s) are inserted into a CDR (e.g., CDR1, CDR2, or CDR3) of the immunoglobulin heavy chain polypeptide and/or light chain polypeptide.
  • CDR e.g., CDR1, CDR2, or CDR3
  • polypeptides are not limited to polypeptides comprising the specific amino acid sequences described herein.
  • the immunoglobulin heavy chain polypeptide or light chain polypeptide can be any heavy chain polypeptide or light chain polypeptide that competes with the immunoglobulin heavy chain polypeptide or light chain polypeptide for binding to IL-33.
  • the immunoglobulin heavy chain polypeptide or light chain polypeptide can be any heavy chain polypeptide or light chain polypeptide that binds to the same epitope of IL-33 recognized by the heavy and light chain polypeptides described herein.
  • Antibody competition can be assayed using routine peptide competition assays which utilize ELISA, Western blot, or immunohistochemistry methods (see, e.g., U.S. Patents 4,828,981 and 8,568,992; and Braitbard et al, Proteome Sci., 4 : 12 (2006)).
  • Any amino acid residue of the immunoglobulin heavy chain polypeptide and/or the immunoglobulin light chain polypeptide can be replaced, in any combination, with a different amino acid residue, or can be deleted or inserted, so long as the biological activity of the IL-33-binding agent is enhanced or improved as a result of the amino acid replacements, insertions, and/or deletions.
  • The“biological activity” of an IL-33-binding agent refers to, for example, binding affinity for a particular IL-33 epitope, neutralization or inhibition of IL-33 binding to its receptor(s), neutralization or inhibition of IL-33 activity in vivo (e.g., IC50), pharmacokinetics, and cross-reactivity (e.g., with non-human homologs or orthologs of the IL-33 protein, or with other proteins or tissues).
  • Other biological properties or characteristics of an antigen-binding agent recognized in the art include, for example, avidity, selectivity, solubility, folding, immunotoxicity, expression, and formulation.
  • the aforementioned properties or characteristics can be observed, measured, and/or assessed using standard techniques including, but not limited to, ELISA, competitive ELISA, surface plasmon resonance analysis (BIACORETM), or KINEXATM, in vitro or in vivo neutralization assays, receptor-ligand binding assays, cytokine or growth factor production and/or secretion assays, and signal transduction and immunohistochemistry assays.
  • standard techniques including, but not limited to, ELISA, competitive ELISA, surface plasmon resonance analysis (BIACORETM), or KINEXATM, in vitro or in vivo neutralization assays, receptor-ligand binding assays, cytokine or growth factor production and/or secretion assays, and signal transduction and immunohistochemistry assays.
  • the IL-33-binding agent preferably inhibits or neutralizes the activity of IL-33 by at least about 20%, about 30%, about 40%, about 50%, about 60%, about 70%, about 80%, about 90%, about 95%, about 100%, or a range defined by any two of the foregoing values.
  • the terms“inhibit” or“neutralize,” as used herein with respect to the activity of a IL-33- binding agent refer to the ability to substantially antagonize, prohibit, prevent, restrain, slow, disrupt, alter, eliminate, stop, or reverse the progression or severity of, for example, the biological activity of IL-33, or a disease or condition associated with IL-33.
  • the IL-33 binding agent can be a protein (e.g., an antibody or antibody fragment) comprising, consisting essentially of, or consisting of one or more of the immunoglobulin heavy chain polypeptides and/or one or more of the immunoglobulin light chain
  • the IL-33-binding agent can be a whole antibody, as described herein, or an antibody fragment.
  • the terms“fragment of an antibody,”“antibody fragment,” and “functional fragment of an antibody” are used interchangeably herein to mean one or more fragments of an antibody that retain the ability to specifically bind to an antigen (see, generally, Holliger et al, Nat. Biotech., 23(9): 1126-1129 (2005)).
  • the isolated IL-33 binding agent can contain any IL-33-binding antibody fragment.
  • the antibody fragment desirably comprises, for example, one or more CDRs, the variable region (or portions thereof), the constant region (or portions thereof), or combinations thereof.
  • antibody fragments include, but are not limited to, (i) a Fab fragment, which is a monovalent fragment consisting of the VL, VH, CL, and CHi domains, (ii) a Ffab L fragment, which is a bivalent fragment comprising two Fab fragments linked by a disulfide bridge at the hinge region, (iii) a Fv fragment consisting of the VL and VH domains of a single arm of an antibody, (iv) a Fab’ fragment, which results from breaking the disulfide bridge of an F(ab’)2 fragment using mild reducing conditions, (v) a disulfide-stabilized Fv fragment (dsFv), and (vi) a domain antibody (dAb), which is an antibody single variable region domain (VH or VL) polypeptide that specifically binds antigen.
  • a Fab fragment which is a monovalent fragment consisting of the VL, VH, CL, and CHi domains
  • a Ffab L fragment which is a bi
  • the fragment can be of any size so long as the fragment binds to, and preferably inhibits the activity of, IL-33.
  • a fragment of the immunoglobulin heavy chain polypeptide desirably comprises between about 5 and 18 (e.g., about 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, or a range defined by any two of the foregoing values) amino acids.
  • a fragment of the immunoglobulin light chain polypeptide desirably comprises between about 5 and 18 (e.g., about 5, 6, 7, 8, 9, 10,
  • the antibody or antibody fragment desirably comprises a heavy chain constant region (F c ) of any suitable class.
  • F c heavy chain constant region
  • the antibody or antibody fragment comprises a heavy chain constant region that is based upon wild-type IgGl, IgG2, or IgG4 antibodies, or variants thereof.
  • the IL-33-binding agent also can be a single chain antibody fragment.
  • single chain antibody fragments include, but are not limited to, (i) a single chain Fv (scFv), which is a monovalent molecule consisting of the two domains of the Fv fragment (i.e., VL and VH) joined by a synthetic linker which enables the two domains to be synthesized as a single polypeptide chain (see, e.g., Bird et al, Science, 242: 423-426 (1988); Huston et al, Proc. Natl. Acad. Sci. USA, 85: 5879-5883 (1988); and Osbourn et al., Nat.
  • scFv single chain Fv
  • a diabody which is a dimer of polypeptide chains, wherein each polypeptide chain comprises a VH connected to a VL by a peptide linker that is too short to allow pairing between the VH and VL on the same polypeptide chain, thereby driving the pairing between the complementary domains on different VH -VL polypeptide chains to generate a dimeric molecule having two functional antigen binding sites.
  • Antibody fragments are known in the art and are described in more detail in, e.g., U.S. Patent
  • the IL-33-binding agent also can be an intrabody or fragment thereof.
  • An intrabody is an antibody which is expressed and which functions intracellularly. Intrabodies typically lack disulfide bonds and are capable of modulating the expression or activity of target genes through their specific binding activity. Intrabodies include single domain fragments such as isolated VH and VL domains and scFvs. An intrabody can include sub- cellular trafficking signals atached to the N or C terminus of the intrabody to allow expression at high concentrations in the sub-cellular compartments where a target protein is located.
  • an intrabody Upon interaction with a target gene, an intrabody modulates target protein function and/or achieves phenotypic/functional knockout by mechanisms such as accelerating target protein degradation and sequestering the target protein in a non-physiological sub-cellular compartment.
  • Other mechanisms of intrabody-mediated gene inactivation can depend on the epitope to which the intrabody is directed, such as binding to the catalytic site on a target protein or to epitopes that are involved in protein-protein, protein-DNA, or protein-RNA interactions.
  • the IL-33-binding agent also can be an antibody conjugate.
  • the isolated IL-33-binding agent can be a conjugate of (1) an antibody, an alternative scaffold, or fragments thereof, and (2) a protein or non-protein moiety comprising the IL-33-binding agent.
  • the IL-33-binding agent can be all or part of an antibody conjugated to a peptide, a fluorescent molecule, or a chemotherapeutic agent.
  • the IL-33-binding agent can be, or can be obtained from, a human antibody, a non-human antibody, or a chimeric antibody.
  • a humanized antibody is a monoclonal antibody comprising a human antibody scaffold and at least one CDR obtained or derived from a non-human antibody.
  • Non-human antibodies include antibodies isolated from any non-human animal, such as, for example, a rodent (e.g., a mouse or rat).
  • a humanized antibody can comprise, one, two, or three CDRs obtained or derived from a non-human antibody.
  • CDRH3 of the IL-33-binding agent is obtained or derived from a mouse monoclonal antibody, while the remaining variable regions and constant region of the IL-33-binding agent are obtained or derived from a human monoclonal antibody.
  • a human antibody, a non-human antibody, a chimeric antibody, or a humanized antibody can be obtained by any means, including via in vitro sources (e.g., a hybridoma or a cell line producing an antibody recombinantly) and in vivo sources (e.g., rodents).
  • in vitro sources e.g., a hybridoma or a cell line producing an antibody recombinantly
  • in vivo sources e.g., rodents.
  • Methods for generating antibodies are known in the art and are described in, for example, Kohler and Milstein, Eur. J. Immunol., 5: 511-519 (1976); Harlow and Lane (eds .), Antibodies: A Laboratory Manual, CSH Press (1988); and Janeway et al. (eds.), Immunobiology, 5th Ed., Garland Publishing, New York, NY (2001)).
  • a human antibody or a chimeric antibody can be generated using a
  • transgenic mice wherein endogenous antibody genes are effectively replaced with human antibody genes include, but are not limited to, the Medarex HUMAB-MOUSETM, the Kirin TC MOUSETM, and the Kyowa Kirin KM- MOUSETM (see, e.g., Lonberg , Nat. Biotechnol., 23(9): 1117-25 (2005), and Lonberg,
  • a humanized antibody can be generated using any suitable method known in the art (see, e.g., An, Z. (ed.), Therapeutic Monoclonal Antibodies: From Bench to Clinic, John Wiley & Sons, Inc., Hoboken, New Jersey (2009)), including, e.g., grafting of non-human CDRs onto a human antibody scaffold (see, e.g., Kashmiri et al. , Methods, 36( 1): 25-34 (2005); and Hou et al, J. Biochem., 144(1): 115-120 (2008)).
  • a humanized antibody can be produced using the methods described in, e.g., U.S. Patent Application Publication 2011/0287485 Al.
  • a CDR e.g., CDR1, CDR2, or CDR3
  • a variable region of the immunoglobulin heavy chain polypeptide and/or the immunoglobulin light chain polypeptide described herein can be transplanted (i.e., grafted) into another molecule, such as an antibody or non-antibody polypeptide, using either protein chemistry or recombinant DNA technology.
  • the IL-33-binding agent can comprise at least one CDR of an immunoglobulin heavy chain and/or light chain polypeptide as described herein, which can be determined according to any available numbering system, such as Kabat, Chothia, Martin (Enhanced Chothia), Gelfand, Honneger's, or IMGT numbering systems (Wu et al, J Exp Med. (1970) 132:211-50; Chothia et al, JMol Biol. (1987) 196:901-17; Abhinandan et al. , Mol Immunol. (2008) 45:3832-9; Gelfand et al .; J Comput Biol.
  • the isolated IL-33- binding agent can comprise one, two, or three CDRs of an immunoglobulin heavy chain and/or light chain variable region as described herein. Identifying CDRs in a given immunoglobulin chain is within the skill of the ordinary artisan.
  • the CDR1 is located between amino acid residues 26 and 35, inclusive; the CDR2 is located between amino acid residues 50 and 59, inclusive (SEQ ID NO: 1 and SEQ ID NO: 2) or between amino acid residues 50 and 66, inclusive (SEQ ID NOs: 5-50); and the CDR3 is located between amino acid residues 99 and 102, inclusive (SEQ ID NO: 1 and SEQ ID NO: 2) or between amino acid residues 99 and 111, inclusive (SEQ ID NOs 5-50).
  • immunoglobulin light chain polypeptides comprising any one of SEQ ID NO: 3, SEQ ID NO: 4, and SEQ ID NO: 51-66, for example, the CDR1 is located between amino acid residues 24 and 39, inclusive (SEQ ID NO: 3 and SEQ ID NO:
  • the anti-IL-33 antibody comprises the CDRs of SEQ ID NO: 136 (heavy chain variable region) and SEQ ID NO: 171 (light chain variable region).
  • nucleic acid sequence is intended to encompass a polymer of DNA or RNA, i.e., a polynucleotide, which can be single-stranded or double-stranded and which can contain non-natural or altered nucleotides.
  • the terms“nucleic acid” and“polynucleotide” as used herein refer to a polymeric form of nucleotides of any length, either ribonucleotides (RNA) or deoxyribonucleotides (DNA). These terms refer to the primary structure of the molecule, and thus include double- and single-stranded DNA, and double- and single- stranded RNA.
  • RNA or DNA made from nucleotide analogs and modified polynucleotides such as, though not limited to, methylated and/or capped polynucleotides.
  • Nucleic acids are typically linked via phosphate bonds to form nucleic acid sequences or polynucleotides, though many other linkages are known in the art (e.g., phosphorothioates, boranophosphates, and the like).
  • the IL-33 binding agent comprising one or more immunoglobulin heavy and/or light chains described herein can be provided using a nucleic acid encoding the polypeptides, optionally in a vector.
  • the vector can be, for example, a plasmid, episome, cosmid, viral vector (e.g., retroviral or adenoviral), or phage.
  • Suitable vectors and methods of vector preparation are well known in the art (see, e.g., Sambrook et al. , Molecular Cloning, a Laboratory Manual, 3rd edition, Cold Spring Harbor Press, Cold Spring Harbor, N.Y. (2001), and Ausubel et al, Current Protocols in Molecular Biology, Greene Publishing Associates and John Wiley & Sons, New York, N.Y. (1994)).
  • the vector preferably comprises expression control sequences, such as promoters, enhancers, polyadenylation signals, transcription terminators, internal ribosome entry sites (IRES), and the like, that provide for the expression of the coding sequence in a host cell.
  • expression control sequences such as promoters, enhancers, polyadenylation signals, transcription terminators, internal ribosome entry sites (IRES), and the like.
  • Exemplary expression control sequences are known in the art and described in, for example, Goeddel, Gene Expression Technology: Methods in Enzymology, Vol. 185, Academic Press, San Diego, Calif. (1990).
  • promoters including constitutive, inducible, and repressible promoters, from a variety of different sources are well known in the art.
  • Representative sources of promoters include for example, virus, mammal, insect, plant, yeast, and bacteria, and suitable promoters from these sources are readily available, or can be made synthetically, based on sequences publicly available, for example, from depositories such as the ATCC as well as other commercial or individual sources.
  • Promoters can be unidirectional (i.e., initiate transcription in one direction) or bi-directional (i.e., initiate transcription in either a 3’ or 5’ direction).
  • Non-limiting examples of promoters include, for example, the T7 bacterial expression system, pBAD (araA) bacterial expression system, the cytomegalovirus (CMV) promoter, the SV40 promoter, the RSV promoter.
  • Inducible promoters include, for example, the Tet system (U.S. Patents 5,464,758 and 5,814,618), the Ecdysone inducible system (No et al., Proc. Natl. Acad. Sci., 93: 3346-3351 (1996)), the T-REXTM system (Invitrogen,
  • the term“enhancer” as used herein, refers to a DNA sequence that increases transcription of, for example, a nucleic acid sequence to which it is operably linked.
  • Enhancers can be located many kilobases away from the coding region of the nucleic acid sequence and can mediate the binding of regulatory factors, patterns of DNA methylation, or changes in DNA structure.
  • a large number of enhancers from a variety of different sources are well known in the art and are available as or within cloned polynucleotides (from, e.g., depositories such as the ATCC as well as other commercial or individual sources).
  • a number of polynucleotides comprising promoters (such as the commonly -used CMV promoter) also comprise enhancer sequences. Enhancers can be located upstream, within, or downstream of coding sequences.
  • the vector also can comprise a“selectable marker gene.”
  • the term“selectable marker gene,” as used herein, refers to a nucleic acid sequence that allow cells expressing the nucleic acid sequence to be specifically selected for or against, in the presence of a corresponding selective agent. Suitable selectable marker genes are known in the art and described in, e.g., International Patent Application Publications WO 1992/008796 and WO 1994/028143; Wigler et al, Proc. Natl. Acad. Sci. USA, 77: 3567-3570 (1980); O'Hare et al, Proc. Natl. Acad. Sci. USA, 78: 1527-1531 (1981); Mulligan & Berg, Proc. Natl.
  • the vector is an“episomal expression vector” or “episome,” which is able to replicate in a host cell, and persists as an extrachromosomal segment of DNA within the host cell in the presence of appropriate selective pressure (see, e.g., Conese et al, Gene Therapy, 11: 1735-1742 (2004)).
  • Representative commercially available episomal expression vectors include, but are not limited to, episomal plasmids that utilize Epstein Barr Nuclear Antigen 1 (EBNA1) and the Epstein Barr Virus (EBV) origin of replication (oriP).
  • the vectors pREP4, pCEP4, pREP7, and pcDNA3.1 from Invitrogen (Carlsbad, CA) and pBK-CMV from Stratagene (La Jolla, CA) represent non-limiting examples of an episomal vector that uses T-antigen and the SV40 origin of replication in lieu of EBNA1 and oriP.
  • kits include integrating expression vectors, which may randomly integrate into the host cell’s DNA, or may include a recombination site to enable the specific recombination between the expression vector and the host cell’s chromosome.
  • integrating expression vectors may utilize the endogenous expression control sequences of the host cell’s chromosomes to effect expression of the desired protein.
  • Examples of vectors that integrate in a site specific manner include, for example, components of the flp-in system from Invitrogen (Carlsbad, CA) (e.g., pcDNATM5/FRT), or the cre-lox system, such as can be found in the pExchange-6 Core Vectors from Stratagene (La Jolla, CA).
  • vectors that randomly integrate into host cell chromosomes include, for example, pcDNA3.l (when introduced in the absence of T-antigen) from Life Technologies (Carlsbad, CA), UCOE from Millipore (Billerica, MA), and pCI or pFNlOA (ACT) FLEXITM from Promega (Madison, WI).
  • Viral vectors also can be used.
  • Representative commercially available viral expression vectors include, but are not limited to, the adenovirus-based Per.C6 system available from Crucell, Inc. (Leiden, The Netherlands), the lenti viral-based pLPl from Invitrogen (Carlsbad, CA), and the retroviral vectors pFB-ERV plus pCFB-EGSH from Stratagene (La Jolla, CA).
  • Nucleic acid sequences encoding the amino acid sequences described herein can be provided to a cell on the same vector (i.e., in cis).
  • a unidirectional promoter can be used to control expression of each nucleic acid sequence.
  • a combination of bidirectional and unidirectional promoters can be used to control expression of multiple nucleic acid sequences.
  • Nucleic acid sequences encoding the amino acid sequences described herein alternatively can be provided to the population of cells on separate vectors (i.e., in trans). Each of the nucleic acid sequences in each of the separate vectors can comprise the same or different expression control sequences. The separate vectors can be provided to cells simultaneously or sequentially.
  • the vector(s) comprising the nucleic acid(s) encoding the amino acid sequences described herein can be introduced into a host cell that is capable of expressing the polypeptides encoded thereby, including any suitable prokaryotic or eukaryotic cell.
  • Preferred host cells are those that can be easily and reliably grown, have reasonably fast growth rates, have well characterized expression systems, and can be transformed or transfected easily and efficiently.
  • prokaryotic cells include, but are not limited to, cells from the genera Bacillus (such as Bacillus subtilis and Bacillus brevis), Escherichia (such as E. coli ), Pseudomonas, Streptomyces , Salmonella, and Erwinia.
  • Particularly useful prokaryotic cells include the various strains of Escherichia coli (e.g., K12, HB101 (ATCC No. 33694), DH5a, DH10, MC1061 (ATCC No. 53338), and CC102).
  • the vector is introduced into a eukaryotic cell.
  • Suitable eukaryotic cells include, for example, yeast cells, insect cells, and mammalian cells.
  • suitable yeast cells include those from the genera Kluyveromyces, Pichia, Rhino-sporidium, Saccharomyces, and Schizosaccharomyces.
  • Preferred yeast cells include, for example, Saccharomyces cerivisae and Pichia pastoris.
  • Suitable insect cells are described in, for example, Kitts et al, Biotechniques, 14: 810-817 (1993); Lucklow, Curr. Opin. Biotechnol, 4: 564-572 (1993); and Lucklow et al, J. Virol., 67: 4566-4579 (1993).
  • Preferred insect cells include Sf-9 and HI5 (Invitrogen, Carlsbad, CA).
  • mammalian cells are utilized.
  • a number of suitable mammalian host cells are known in the art, and many are available from the American Type Culture
  • suitable mammalian cells include, but are not limited to, Chinese hamster ovary cells (CHO) (ATCC No. CCL61), CHO DHFR-cells (Urlaub et al, Proc. Natl. Acad. Sci. USA, 97: 4216-4220 (1980)), human embryonic kidney (HEK) 293 or 293T cells (ATCC No. CRL1573), and 3T3 cells (ATCC No. CCL92).
  • CHO Chinese hamster ovary cells
  • CHO DHFR-cells Urlaub et al, Proc. Natl. Acad. Sci. USA, 97: 4216-4220 (1980)
  • human embryonic kidney (HEK) 293 or 293T cells ATCC No. CRL1573)
  • 3T3 cells ATCC No. CCL92
  • Other suitable mammalian cell lines are the monkey COS-l (ATCC No. CRL1650) and COS-7 cell lines (ATCC No. CRL1651), as well
  • mammalian host cells include primate cell lines and rodent cell lines, including transformed cell lines. Normal diploid cells, cell strains derived from in vitro culture of primary tissue, as well as primary explants, are also suitable.
  • Other suitable mammalian cell lines include, but are not limited to, mouse neuroblastoma N2A cells, HeLa, mouse L-929 cells, and BHK or HaK hamster cell lines, all of which are available from the ATCC.
  • the mammalian cell is a human cell.
  • the mammalian cell can be a human lymphoid or lymphoid derived cell line, such as a cell line of pre-B lymphocyte origin.
  • human lymphoid cells lines include, without limitation, RAMOS (CRL-1596), Daudi (CCL-213), EB-3 (CCL-85), DT40 (CRL-2111), 18- 81 (Jack et al, Proc. Natl. Acad. Sci. USA, 85: 1581-1585 (1988)), Raji cells (CCL-86), and derivatives thereof.
  • a nucleic acid sequence encoding the amino acid sequence may be introduced into a cell by“transfection,”“transformation,” or“transduction.”“Transfection,” “transformation,” or“transduction,” as used herein, refer to the introduction of one or more exogenous polynucleotides into a host cell by using physical or chemical methods. Many transfection techniques are known in the art and include, for example, calcium phosphate DNA co-precipitation (see, e.g., Murray E.J. (ed.). Methods in Molecular Biology, Vol. 7, Gene Transfer and Expression Protocols, Humana Press (1991)); DEAE-dextran;
  • Phage or viral vectors can be introduced into host cells, after growth of infectious particles in suitable packaging cells, many of which are commercially available.
  • the IL-33 inhibitor may be administered as part of a composition.
  • the composition is a pharmaceutically acceptable (e.g., physiologically acceptable) composition, and comprises a carrier, preferably a pharmaceutically acceptable (e.g., physiologically acceptable) carrier.
  • a carrier preferably a pharmaceutically acceptable (e.g., physiologically acceptable) carrier.
  • Any suitable carrier can be used within the context of the invention, and such carriers are well known in the art. The choice of carrier will be determined, in part, by the particular site to which the composition may be administered and the particular method used to administer the composition.
  • the composition optionally can be sterile.
  • the composition can be frozen or lyophilized for storage and reconstituted in a suitable sterile carrier prior to use.
  • the compositions can be generated in accordance with conventional techniques described in, e.g., Remington: The Science and Practice of Pharmacy, 21st Edition, Lippincott Williams & Wilkins, Philadelphia, PA (2001).
  • the terms“treatment,”“treating,” and the like refer to obtaining a desired pharmacologic and/or physiologic effect, e.g., inhibiting or preventing an allergic reaction.
  • the effect is therapeutic, i.e., the effect partially or completely cures a disease and/or adverse symptom attributable to the disease.
  • the inventive method comprises administering a“therapeutically effective amount” of the IL-33 inhibitor.
  • a “therapeutically effective amount” refers to an amount effective, at dosages and for periods of time necessary, to achieve a desired therapeutic result.
  • the therapeutically effective amount may vary according to factors such as the disease state, age, sex, and weight of the individual, and the ability of the IL-33 inhibitor to elicit a desired response in the individual.
  • a therapeutically effective amount of a composition is an amount which decreases IL-33 bioactivity in a mammal or human.
  • the pharmacologic and/or physiologic effect may be prophylactic, i.e., the effect completely or partially prevents a disease or symptom thereof.
  • the inventive method comprises administering a“prophylactically effective amount” of the IL-33 inhibitor.
  • A“prophylactically effective amount” refers to an amount effective, at dosages and for periods of time necessary, to achieve a desired prophylactic result (e.g., prevention of disease onset).
  • the IL-33 inhibitor can be administered to the patient using standard
  • compositions preferably are suitable for parenteral administration.
  • parenteral includes intravenous, intramuscular, subcutaneous, rectal, vaginal, and intraperitoneal administration. More preferably, the composition is administered using peripheral systemic delivery by intravenous, intraperitoneal, or subcutaneous injection.
  • the IL-33 inhibitor also can be administered by introducing a nucleic acid encoding the IL-33 inhibitor to the mammal, whereby the IL-33 inhibitor is expressed in the mammal.
  • the nucleic acid encoding the IL-33 inhibitor can be in a vector, as described herein with respect to other embodiments.
  • the nucleic acid encoding the IL-33 inhibitor can be administered directly to the mammal, or administered to a cell (e.g., an autologous cell) to provide a transformed cell that expresses the IL-33 inhibitor, and the transformed cell can then be administered to the mammal.
  • IL-33 inhibition may be achieved by introduction or deletion of genetic material that modulates the expression of IL-33.
  • Techniques for administering nucleic acids to mammals and cells to express proteins, techniques for transforming cells and administering transformed cells to mammals, and techniques for deleting genetic material are known in the art.
  • the biological activity of the IL-33 inhibitor can be measured by any suitable method known in the art.
  • the biological activity can be assessed by determining the stability of a particular IL-33 inhibitor.
  • the IL-33 inhibitor (e.g., an antibody) has an in vivo half life between about 30 minutes and 45 days (e.g., about 30 minutes, about 45 minutes, about 1 hour, about 2 hours, about 4 hours, about 6 hours, about 10 hours, about 12 hours, about 1 day, about 5 days, about 10 days, about 15 days, about 25 days, about 35 days, about 40 days, about 45 days, or a range defined by any two of the foregoing values).
  • the IL-33 inhibitor has an in vivo half life between about 2 hours and 20 days (e.g., about 5 hours, about 10 hours, about 15 hours, about 20 hours, about 2 days, about 3 days, about 7 days, about 12 days, about 14 days, about 17 days, about 19 days, or a range defined by any two of the foregoing values).
  • the IL-33 inhibitor has an in vivo half life between about 10 days and about 40 days (e.g., about 10 days, about 13 days, about 16 days, about 18 days, about 20 days, about 23 days, about 26 days, about 29 days, about 30 days, about 33 days, about 37 days, about 38 days, about 39 days, about 40 days, or a range defined by any two of the foregoing values).
  • the biological activity of a particular IL-33-binding agent also can be assessed by determining its binding affinity to IL-33 or an epitope thereof.
  • affinity refers to the equilibrium constant for the reversible binding of two agents and is expressed as the dissociation constant (KD).
  • Affinity of a binding agent to a ligand can be, for example, from about 1 femtomolar (fM) to about 100 micromolar (mM) (e.g., from about 1 fM to about 1 picomolar (pM), from about 1 pM to about 1 nanomolar (nM), from about 1 nM to about 1 micromolar (mM), or from about 1 mM to about 100 pM).
  • the IL-33-binding agent can bind to an IL-33 protein with a KD less than or equal to 1 nanomolar (e.g., 0.9 nM, 0.8 nM, 0.7 nM, 0.6 nM, 0.5 nM, 0.4 nM, 0.3 nM, 0.2 nM, 0.1 nM, 0.05 nM, 0.025 nM, 0.01 nM, 0.001 nM, or a range defined by any two of the foregoing values).
  • 1 nanomolar e.g., 0.9 nM, 0.8 nM, 0.7 nM, 0.6 nM, 0.5 nM, 0.4 nM, 0.3 nM, 0.2 nM, 0.1 nM, 0.05 nM, 0.025 nM, 0.01 nM, 0.001 nM, or a range defined by any two of the foregoing values.
  • the IL-33-binding agent can bind to IL-33 with a KD less than or equal to 200 pM (e.g., 190 pM, 175 pM, 150 pM, 125 pM, 110 pM, 100 pM, 90 pM, 80 pM, 75 pM, 60 pM, 50 pM, 40 pM, 30 pM, 25 pM, 20 pM, 15 pM, 10 pM, 5 pM, 1 pM, or a range defined by any two of the foregoing values).
  • 200 pM e.g., 190 pM, 175 pM, 150 pM, 125 pM, 110 pM, 100 pM, 90 pM, 80 pM, 75 pM, 60 pM, 50 pM, 40 pM, 30 pM, 25 pM, 20 pM, 15 pM, 10 pM, 5 pM
  • Immunoglobulin affinity for an antigen or epitope of interest can be measured using any art- recognized assay.
  • Such methods include, for example, fluorescence activated cell sorting (FACS), separable beads (e.g., magnetic beads), surface plasmon resonance (SPR), solution phase competition (KINEXATM), antigen panning, and/or ELISA (see, e.g., Janeway et al. (eds.), Immunobiology, 5th ed., Garland Publishing, New York, NY, 2001).
  • the IL-33 inhibitor may be administered alone or in combination with other drugs (e.g., as an adjuvant).
  • other agents for the treatment or prevention of allergic reactions can be used.
  • agents include antihistamines, other anti-inflammatory agents, such as corticosteroids (e.g., prednisone and fluticasone) and non-steroidal anti-inflammatory drugs (NSAIDs) (e.g., aspirin, ibuprofen, and naproxen).
  • corticosteroids e.g., prednisone and fluticasone
  • NSAIDs non-steroidal anti-inflammatory drugs
  • the following examples are intended to illustrate the invention, but do not limit the scope of the invention otherwise described.
  • the example further demonstrates that the IL-33 inhibitor of the present invention improves peanut tolerance in patients with peanut allergies.
  • escalating doses of peanut protein consisted of 5, 20, 50, 100, 100, 100, and 125 mg, which resulted in a cumulative maximum dose of 500 mg.
  • Symptoms were monitored using the OFC Symptom Scoring Assessment Tool (e.g., Sampson et al, J. Allergy Clin. Immunol., 130(6): 1260-1274 at Fig. 3 (2012)) and other safety assessments (e.g., Modified Bock’s criteria) were performed.
  • the anti-IL-33 antibbody used contained the following sequences:
  • Anti-IL-33 Antibody (IgGl)
  • Peanut specific wheal size was assessed at baseline, day 15 and day 45 for placebo and ANB020 dosed patients. All patients dosed with ANB020 demonstrated a significant reduction in peanut wheal size at day 15 relative to baseline, which returned to around baseline levels at day 45. No significant change was observed among placebo patients.
  • Histamine skin prick testing was also performed on the flexor surface of the forearm utilizing standard testing procedures recommended by the American Academy of Allergy, Asthma, and Immunology and the American College of Allergy, Asthma, and Immunology Joint Practice Parameter on Allergy Diagnostic Testing, as similary described above for the peanut allergy testing.
  • a commercial extract of histamine dihydrochloride 10 mg/ml was used for testing.
  • an IL-33 inhibitor can reduce the severity of, or prevent, an allergic reaction to peanut allergen.

Abstract

A method of inhibiting or preventing an allergic reaction to peanut allergen, comprising administering to the mammal an IL-33 inhibitor.

Description

INHIBITION OF ALLERGIC REACTION TO PEANUT ALLERGEN USING AN IL-33
INHIBITOR
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This patent application claims priority to U.S. provisional patent application no. 62/647,389 filed on March 23, 2018, the entire disclosure of which is hereby incorporated by reference.
INCORPORATION-BY-REFERENCE OF MATERIAL SUBMITTED
ELECTRONICALLY
[0002] Incorporated by reference in its entirety herein is a computer-readable nucleotide/amino acid sequence listing submitted concurrently herewith and identified as follows: One 284,543 Byte ASCII (Text) file named“7422l5_ST25.txt," created on March 23, 2018.
BACKGROUND OF THE INVENTION
[0003] A significant proportion of individuals suffer from food allergies, which represent an increasing socio-economic burden. Many food antigens can trigger an allergic reaction which, in the most severe cases, might lead to anaphylactic shock and death. The most common cause of food allergy is peanut allergy, which afflicts up to 10% of children and 1% of adults in the US. Once an allergic reaction occurs, patients might manifest with an array of symptoms and in extreme cases they have to be hospitalized and rapidly treated.
[0004] As for all atopic disorders, high levels of immunoglobulin E (IgE), and peanut protein-specific IgE, have been described in peanut allergy patients. Current therapy involves education around the avoidance of peanuts in foods, which can be problematic given the wide and frequently hidden use of peanut as a food ingredient. Furthermore, an avoidance approach does not represent a true“therapy.”
[0005] Anaphylaxis presents in a significant proportion of peanut allegic individuals and in the most severe rection patients might be hospitalized and if not properly and raipidly treated might die. In these cases the prompt recognition and treatment of anaphylactic reactions must happen as soon as they occur. The only effective treatment for anaphylaxis is intramuscular epinephrine (EpiPen) administration, whilst oxygen, nebulized albuterol, systemic corticosteroids and histamine Hl and/or H2 receptor antagonists can help alleviate secondary symptoms.
[0006] Immunotherapeutic approaches, mainly based on antigen-specific (i.e., peanut) desensitization, are being explored to find an effective treatment for this life-threatening allergy. Other strategies are based on antigen desensitization, whereby pathogenic antigen specific T cells are re-educated after a chronic and prolonged challenge with the triggering
allergen/antigen. Clinical studies have provided intriguing evidence of potential effects on pathogenic T cells with some clinical benefits. However desensitizing therapeutic approaches bear the intrinsic risk of eliciting an anaphylactic shock reaction, and therefore such approaches may be limited to milder patients at lower risk of anaphylactic response to the desensitizing therapy. Furthermore patients with food allergies often are allergic to more than one food antigen and present with other atopic diseases. These desensitization approaches are specific, by definition, for a single antigen, and do not directly target the cause of the anaphylactic shock reaction and in some cases might actually induce a this reaction.
[0007] Thus, a need for new methods for inhibiting or preventing allergic reactions remains.
BRIEF SUMMARY OF THE INVENTION
[0008] Provided herein is a method of inhibiting or preventing an allergic reaction to peanut allergen in a patient. In one aspect, the method comprises administering to the patient about 50-1000 mg of an IL-33 inhibitor not more than once every 14 days (e.g., not more than once every 30 days, not more than once every 60 days, or not more than once every 90 days). In another aspect, the method comprises administering to the patient an IL-33 inhibitor, wherein the patient exhibits a moderate to severe allergic reaction within 24 hours of oral administration of 2000 mg or less of peanut protein.
[0009] Also provided are related methods and compositions as described in the detailed description. DETAILED DESCRIPTION OF THE INVENTION
[0010] The invention provides a method for inhibiting or preventing an allergic reaction to peanut allergen (peanut allergy or peanut allergic reaction) in a patient. The term“peanut allergy,”“allergic reaction to peanut allergen,” or the like as used herein, refers to a chronic or acute immunological hypersensitivity reaction (e.g. a type I hypersensitivity reaction) elicited in a mammal in response to ingested peanut protein. Identification and diagnosis of peanut allergy is routine among persons of ordinary skill in the art. Clinical manifestations of a peanut allergic reaction include, but are not limited to, rash, eczema, atopic dermatitis, hives, urticaria, angiodedma, asthma, rhinitis, wheezing, sneezing, dyspnea, swelling of the airways, shortness of breath, other respiratory symptoms, abdominal pain, cramping, nausea, vomiting, diarrhea, melena, tachycardia, hypotension, syncope, seizures, and anaphylactic shock. Methods of diagnosing peanut allergy include, for example, elimination diets, oral food challenge with a suspected allergen, skin prick tests, detection of allergen-specific immunoglobulins (e.g. IgE) within the blood of a subject, and molecular allergy component testing. Allergic response may be defined by increased level of serum IgE or increased expression and secretion of IL-9 compared to the levels in a negative control (e.g., serum levels of a normal, non-diseased subject of the same type, known to be in a non-allergic state, or of a given individual before contacted with a particular allergen), and/or clinical manifestation of anaphylactic shock.
[0011] According to one aspect, the method of inhibiting or preventing an allergic reaction to peanut allergen comprises administering to a patient with a peanut allergy about about 50-1000 mg of an IL-33 inhibitor not more than once every 14 days or once every 30 days (e.g., not more than once every 60 days or not more than once every 90 days). In some embodiments, the dose of IL-33 inhibitor is about 50 mg or more, such as about 60 mg or more, about 70 mg or more, about 80 mg or more, about 90 mg or more, about 100 mg or more, about 110 mg or more, about 120 mg or more, or even about 130 mg or more (e.g., about 200 mg or more, or 250 mg or more). In other embodiments, the dose of IL-33 inhibitor is about 1000 mg or less, such as about 800 mg or less, about 600 mg or less, about 500 mg or less, such as about 450 mg. or less, about 400 mg or less, about 350 mg or less, about 300 mg or less, about 250 mg or less, or about 200 mg or less. In a particular embodiment, the dose is about 300 mg, about 350 mg, about 200 mg, or about 150 mg. In some embodiements, the dose is a single dose in the stated amount. [0012] The method allows for relatively infrequent dosing on a schedule of not more than once every 14 days, 21 days, or 30 days. In some embodidemnts, an even longer interval can be used (e.g., not more than once every 45 days, 60 days, 90 days, or 120 days).
[0013] Without wishing to be bound by any particular theory or mechanism of action, it is believed that the methods provided herein can, in at least some embodiments, target different key steps of the pathogenic cascade controlling peanut allergic reactions from commencement, function of allergen specific pathogenic T cells to the containment of anaphylactic manifestations. IL-33 is a preformed cytokine, which is predominantly present in cells with barrier function, such as endothelial and epithelial cells. It is released rapidly upon allergen, pathogen, or environmental agent challenge, thus acting as a primary and initial trigger of Th2 inflammatory responses. IL-33 pleiotropic functions expand to the orchestration of immune responses by affecting pathogenic Th2 T cells to the magnification of anpylatic responses via IL-33 direct activity on mast cells and bashopils . Therefore, it is believed that IL-33 inhibition controls, at different stages, pathogenic allergic peanut allergic response. IL-33 inhibtion could also benefit peanut allergic patients who present with concominant food allergies (i.e. nuts), or with other atopic disorders such as atopic dermatitis or asthma, which are often present in peanut (food) allergy patients. Therefore IL-33 inhbition would represent an holistic therapeutic approach for diseases that share this patoghenic cascade further helping peanut (food) allergy patients.
[0014] The method provided herein is believed to be useful for any human patient who exhibits a peanut allergy, but is believed to be particularly useful for patients who present with moderate to severe peanut allergies. A patient is considerd to have a moderate to severe peanut allergy if they exhibt the onset of moderate to severe symptoms of an allergic reaction within 24 hours (e.g., within 12 hours, within 6 hours, within 3 hours, within 1 hour, or even within 30 minutes) of ingesting up to about 2000 mg of peanut protein (e.g., ingesting about 2000 mg or less peanut protein, about 1000 mg or less peanut protein, about 500 mg or less peanut protien, such as about 400 mg or less of peanut protein, about 300 mg or less of peanut protein, about 200 mg or less of peanut protein, about 100 mg or less of peanut protein, about 50 mg or less peanut protein, or about 25 mg or less peanut protein). Peanut protein can be administered as a single dose, or as cumulative doses totaling the above stated amounts. Oral food challenge according to PRACTALL guidelines is known in the art (e.g., Sampson et al, J. Allergy Clin. Immunol., 130(6): 1260-1274 (2012)) and is generally perfomed by having the patient ingest incremental portions (e.g., about 10 or more mg, about 25 or more mg, about 50 or more mg, or about 100 or more mg) of peanut protein or, if applicable, placebo up to a given maximum amount (e.g. about 500 mg, about 10000 mg, about 2000 mg, or other amount as described above) on a predetermined schedule, such as at 15-, 20-, or 30-minute intervals.
[0015] Moderate to severe allergic symptoms are determined according to PRACTALL guidelines (e.g., Sampson et al, J. Allergy Clin. Immunol., 130(6): 1260-1274 (2012)), and includes a patient with one or more symptoms qualifying as moderate or severe according to these guidelines. Thus, for instance, a patient with moderate or severe allergic reaction includes a patient exhibiting at least one of (i) erythematous rash over at least 10% of the skin, (ii) skin scratching for more than 2 minutes at a time, or scratching severe enough to cause excoriation of the skin; (iii) greater than 3 hives or visible (e.g., 10% or more) lip or face edema or generalized edema; (iv) areas of erythema or generalized erythema; (v) bursts of sneezing (less than 10) or intermittent rubbing of nose and/or eyes, or frequent sniffing or persistent rhinorrhea over a period of 2 hours; (vi) inspiratory and expiratory wheezing; wheezing audible without stethoscope; and/or use of accessory muscles when breathing; (vii) hoarseness, repeated dry cough, or stridor; (viii) repeated complaints of nausea or pain with normal activity, or GI distress with decreased activity due to GI symptoms; (ix) two or more epispodes of emesis or diarrhea, or one or more episode of each, within 2 hours; (x) greater than 20% drop in blood pressure from baseline blood pressure, significant change in mental status, cardiovascular collapse, or signs of impaired circulation (e.g., unconsciousness).
[0016] Thus, according to another aspect of the method of the method of inhibiting or preventing an allergic reaction to peanut allergen comprises administering an IL-33 inhibitor, wherein the patient exhibits a moderate to severe allergic reaction within 24 hours of oral administration of 2000 mg or less of peanut protein, or other amount as described above. The method can, therefore, comprise selecting a patient having moderate to severe peanut allergy prior to administration of the IL-33 inhibitor. The selection can be peformed, for instance, by orally administering up to 2000 mg of peanut protein (or other amount as described above) to the patient and selecting the patient for administration of the IL-33 inhibitor if the patient exhibits a moderate to severe allergic reaction within 24 hours. Other elements of the method are as described with respect to the other aspects of the invention. [0017] The treatment with the IL-33 inhibitor will reduce the degree or severeity of the patient’s allergic reaction to peanut protein. In some embodiments, the patient exhibits a moderate to severe allergic reaction within 24 hours after oral administration of a dose of peanut protein prior to administration of the IL-33 inhibitor, and within 30 days after administration of the IL-33 inhibitor (or even within 21 days, 14 days, or 7 days), the patient no longer exhibits a moderate to severe allergic reaction after oral administration of peanut protein in the same amount that caused a moderate to severe allergic reaction in the patient prior to administration of the IL-33 inhibitor. In this regard, any of the foregoing methods can comprise (a) administering peanut protein to the patient before administration of an IL-33 inhibitor, wherein the patient is selected for IL-33 inhibitor treatment if the patient exhibits a moderate to severe allergic reaction to the peanut protein, and (b) administering a second dose of peanut protein to the patient within 30 days (or within 21 days, 14 days, or 7 days) after administration of the IL-33 inhibitor in the same amount that caused moderate to severe allergic reaction prior to administration of the IL-33 inhibitor , wherein the patient no longer exhibits a moderate to severe allergic reaction to the peanut protein (e.g., exhiibts no allergic reaction or only mild allergic symptoms within 24 hours after administration of the peanut protein).
[0018] IL-33 (also known as nuclear factor (NF) in high endothelial venules (NF-HEV)) is a cytokine of the IL-l family, which also includes the inflammatory cytokines IL-la, IL- 1b, and IL-l 8. IL-33 has been shown to signal via the ST2 receptor and the IL1RAP receptor. IL-33 is expressed broadly in various tissues, including stomach, lung, spinal cord, brain, and skin, as well as in cells, including smooth muscle cells and epithelial cells lining bronchus and small airways. IL-33 expression is induced by Iί-1b and tumor necrosis factor- a (TNF-a) in lung and dermal fibroblasts and, to a lesser extent, by macrophage activation. IL-33 treatment has been shown to induce T-helper (Th) type 2 responses in mice as indicated by an increase in Th2 cytokine production and serum immunoglobulin. Systemic treatment of mice with IL-33 results in pathologic changes in the lung and the digestive tract (see, e.g., Choi et al, Blood, 114(14): 3117-3126 (2009); and Yagami et al, J. Immunology, 185(10): 5743-5750 (2010)).
[0019] IL-33 is produced as a 30-kDa precursor protein that is cleaved in vitro by caspase-l, releasing the mature l8-kDa form (see, e.g., Schmitz et al., Immunity, 23(5): 479- 490(2005)). Upon binding to the ST2 receptor, IL-33 promotes the activation of nuclear factor (NF)-KB and mitogen-activated protein kinase (MAPK), leading to increased transcription of Th2 cytokines (Schmitz et al, supra).
[0020] Any IL-33 inhibitor can be used in accordance with the invention. The IL-33 inhibitor can be a molecule that inhibits IL-33 protein expression (e.g., an antisense or siRNA). Alternatively, the IL-33 inhibitor can be a molecule that blocks the binding of IL-33 to receptors ST2 and IL1RAP. For instance, the IL-33 inhibitor can be an isolated or purified epitope of IL-33 which blocks binding of IL-33 to its receptor in an indirect or allosteric manner. The IL-33 inhibitor can be an IL-33 binding agent, which can be any substance capable of binding or interacting with IL-33 and affecting the biological activity thereof. The IL-33-binding agent can bind an epitope of IL-33 which blocks the binding of IL-33 to receptors ST2 (also known as IL1RL1) and/or IL-l Receptor Accessory Protein (IL1RAP) and inhibits IL-33 mediated signaling. For example, an IL-33 binding agent may comprise an IL-33 receptor or fragment thereof. In one embodiment, the IL-33 binding agent comprises the IL-33 binding domain of ST2. In another embodiment, the IL-33 binding domain of ST2 is fused to a heterologous polypeptide, for example an Fc portion of an immunoglobulin. The IL-33 binding agent also can be an immunoglobulin or antibody antigen-binding antibody fragment thereof, examples of which are described herein. Other inhibitors of IL-33 expression or activity may include, for example, antibodies that block ST2, IL-l RAP, acrolein, artesunate, vitexin, I-Theanine, or vinpocentine.
[0021] The term“immunoglobulin” or“antibody,” as used herein, refers to a protein that is found in blood or other bodily fluids of vertebrates, which is used by the immune system to identify and neutralize foreign objects, such as bacteria and viruses. The polypeptide is “isolated” in that it is removed from its natural environment. In a preferred embodiment, an immunoglobulin or antibody is a protein that comprises at least one complementarity determining region (CDR). The CDRs form the“hypervariable region” of an antibody, which is responsible for antigen binding (discussed further below). A whole immunoglobulin typically consists of four polypeptides: two identical copies of a heavy (H) chain polypeptide and two identical copies of a light (L) chain polypeptide. Each of the heavy chains contains one N-terminal variable (VH) region and three C-terminal constant (Cn 1. CH2, and CH3) regions, and each light chain contains one N-terminal variable (VL) region and one C- terminal constant (CL) region. The light chains of antibodies can be assigned to one of two distinct types, either kappa (K) or lambda (l), based upon the amino acid sequences of their constant domains. In a typical immunoglobulin, each light chain is linked to a heavy chain by disulphide bonds, and the two heavy chains are linked to each other by disulphide bonds. The light chain variable region is aligned with the variable region of the heavy chain, and the light chain constant region is aligned with the first constant region of the heavy chain. The remaining constant regions of the heavy chains are aligned with each other.
[0022] The variable regions of each pair of light and heavy chains form the antigen binding site of an antibody. The VH and VL regions have the same general structure, with each region comprising four framework (FW or FR) regions. The term“framework region,” as used herein, refers to the relatively conserved amino acid sequences within the variable region which are located between the hypervariable or complementary determining regions (CDRs). There are four framework regions in each variable domain, which are designated FR1, FR2, FR3, and FR4. The framework regions form the b sheets that provide the structural framework of the variable region (see, e.g., C.A. Janeway et al. (eds.),
Immunobiology, 5th Ed., Garland Publishing, New York, NY (2001)).
[0023] The framework regions are connected by three complementarity determining regions (CDRs). As discussed above, the three CDRs, known as CDR1, CDR2, and CDR3, form the“hypervariable region” of an antibody, which is responsible for antigen binding.
The CDRs form loops connecting, and in some cases comprising part of, the beta-sheet structure formed by the framework regions. While the constant regions of the light and heavy chains are not directly involved in binding of the antibody to an antigen, the constant regions can influence the orientation of the variable regions. The constant regions also exhibit various effector functions, such as participation in antibody-dependent complement-mediated lysis or antibody-dependent cellular toxicity via interactions with effector molecules and cells.
[0024] Antibodies which bind to IL-33, and components thereof, are known in the art (see, e.g., US 2014/0271658, US 2009/0041718 Al, 2012/0263709 Al, WO2015099175;
WO 2016077381; and WO 2016/077366). Anti-IL-33 antibodies also are commercially available from sources such as, for example, Abeam (Cambridge, MA). Antibodies to ST2 or ST2L are disclosed, for example, in US 2014/0004107 and US 9090694.
[0025] The anti-IL-33 antibody can comrpise an immunoglobulin heavy chain polypeptide that comprises an amino acid sequence of any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217, or an amino acid sequence that is at least 90% identical to any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67- 140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217. In one embodiment of the invention, the isolated immunoglobulin heavy chain polypeptide comprises, consists of, or consists essentially of an amino acid sequence of any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217. When the immunoglobulin heavy chain polypeptide consists essentially of an amino acid sequence of any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217, additional components can be included in the polypeptide that do not materially affect the polypeptide (e.g., protein moieties such as biotin that facilitate purification or isolation). When the immunoglobulin heavy chain polypeptide consists of an amino acid sequence of any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217, the polypeptide does not comprise any additional components (i.e., components that are not endogenous to the inventive immunoglobulin heavy chain polypeptide). The anti-IL-33 antibody can comprise at least the CDR regions of any of the foregoing heavy chain immunoglobulin sequences, or other fragment thereof comprising the CDR regions. CDR regions of the heavy chain can be determined according to any available numbering system, such as by Rabat, Chothia, Martin (Enhanced Chothia), Gelfand, Honneger's, or IMGT numbering systems (Wu et al, J Exp Med. (1970) 132:211-50; Chothia et al., J Mol Biol. (1987) 196:901-17; Abhinandan et al., Mol Immunol. (2008) 45:3832-9; Gelfand et al. J Comput Biol. (1998) 5:467-77; Honegger et al, JMol Biol. (2001) 309:657-70; Lefranc, Immunol Today (1997) 18:509).
[0026] The immunoglobulin heavy chain polypeptide can comprise an amino acid sequence that is at least 90% identical (e.g., at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% identical) to any one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, or SEQ ID NOs: 206-217. Nucleic acid or amino acid sequence“identity,” as described herein, can be determined by comparing a nucleic acid or amino acid sequence of interest to a reference nucleic acid or amino acid sequence. The percent identity is the number of nucleotides or amino acid residues that are the same (i.e., that are identical) as between the sequence of interest and the reference sequence divided by the length of the longest sequence (i.e., the length of either the sequence of interest or the reference sequence, whichever is longer). A number of mathematical algorithms for obtaining the optimal alignment and calculating identity between two or more sequences are known and incorporated into a number of available software programs.
Examples of such programs include CLUSTAL-W, T-Coffee, and ALIGN (for alignment of nucleic acid and amino acid sequences), BLAST programs (e.g., BLAST 2.1, BL2SEQ, and later versions thereof) and FASTA programs (e.g., FASTA3x, FASTM, and SSEARCH) (for sequence alignment and sequence similarity searches). Sequence alignment algorithms also are disclosed in, for example, Altschul et al, J. Molecular Biol., 215(3): 403-410 (1990), Beigert et al., Proc. Natl. Acad. Sci. USA, 106(10): 3770-3775 (2009), Durbin et al., eds., Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids,
Cambridge University Press, Cambridge, UK (2009), Soding, Bioinformatics, 21(1): 951-960 (2005), Altschul et al, Nucleic Acids Res., 25(11): 3389-3402 (1997), and Gusfield, Algorithms on Strings, Trees and Sequences, Cambridge University Press, Cambridge UK (1997)).
[0027] The anti-IL-33 antibody can comrpise an immunoglobulin light chain polypeptide that comprises an amino acid sequence of any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231, or an amino acid sequence that is at least 90% identical to any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231. In one embodiment of the invention, the isolated immunoglobulin light chain polypeptide comprises, consists of, or consists essentially of an amino acid sequence of any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231. When the immunoglobulin light chain polypeptide consists essentially of an amino acid sequence of any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231, additional components can be included in the polypeptide that do not materially affect the polypeptide (e.g., protein moieties such as biotin that facilitate purification or isolation). When the immunoglobulin light chain polypeptide consists of an amino acid sequence of any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231, the polypeptide does not comprise any additional components (i.e., components that are not endogenous to the immunoglobulin light chain polypeptide). The anti-IL-33 antibody can comprise at least the CDR regions of any of the foregoing heavy chain immunoglobulin sequences, or other fragment thereof comprising the CDR regions. As with the immunoglobulin heavy chain polypeptide, the CDR regions of any of the foregoing heavy chain immunoglobulin sequences can be determined according to any available numbering system, such as Rabat, Chothia, Martin (Enhanced Chothia), Gelfand, Honneger's, or IMGT numbering systems (Wu et al, JExpMed. (1970) 132:211-50; Chothia et al, JMol Biol. (1987) 196:901-17;
Abhinandan et al. , Mol Immunol. (2008) 45:3832-9; Gelfand et al.; J Comput Biol. (1998) 5:467-77; Honegger et al, JMol Biol. (2001) 309:657-70; Lefranc, Immunol Today (1997) 18:509).
[0028] The immunoglobulin light chain polypeptide also can comprise an amino acid sequence that is at least 90% identical (e.g., at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% identical) to any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, or SEQ ID NOs: 218-231. Nucleic acid or amino acid sequence “identity,” as described herein, can be determined using the methods described herein.
[0029] One or more amino acids of the aforementioned immunoglobulin heavy chain polypeptides and/or light chain polypeptides can be replaced or substituted with a different amino acid. An amino acid“replacement” or“substitution” refers to the replacement of one amino acid at a given position or residue by another amino acid at the same position or residue within a polypeptide sequence.
[0030] Amino acids are broadly grouped as“aromatic” or“aliphatic.” An aromatic amino acid includes an aromatic ring. Examples of“aromatic” amino acids include histidine (H or His), phenylalanine (F or Phe), tyrosine (Y or Tyr), and tryptophan (W or Trp). Non aromatic amino acids are broadly grouped as“aliphatic.” Examples of“aliphatic” amino acids include glycine (G or Gly), alanine (A or Ala), valine (V or Val), leucine (L or Leu), isoleucine (I or Ile), methionine (M or Met), serine (S or Ser), threonine (T or Thr), cysteine (C or Cys), proline (P or Pro), glutamic acid (E or Glu), aspartic acid (A or Asp), asparagine (N or Asn), glutamine (Q or Gln), lysine (K or Lys), and arginine (R or Arg).
[0031] Aliphatic amino acids may be sub-divided into four sub-groups. The“large aliphatic non-polar sub-group” consists of valine, leucine, and isoleucine. The“aliphatic slightly-polar sub-group” consists of methionine, serine, threonine, and cysteine. The “aliphatic polar/charged sub-group” consists of glutamic acid, aspartic acid, asparagine, glutamine, lysine, and arginine. The“small-residue sub-group” consists of glycine and alanine. The group of charged/polar amino acids may be sub-divided into three sub-groups: the“positively-charged sub-group” consisting of lysine and arginine, the“negatively-charged sub-group” consisting of glutamic acid and aspartic acid, and the“polar sub-group” consisting of asparagine and glutamine.
[0032] Aromatic amino acids may be sub-divided into two sub-groups: the“nitrogen ring sub-group” consisting of histidine and tryptophan and the“phenyl sub-group” consisting of phenylalanine and tyrosine.
[0033] The amino acid replacement or substitution can be conservative, semi conservative, or non-conservative. The phrase“conservative amino acid substitution” or “conservative mutation” refers to the replacement of one amino acid by another amino acid with a common property. A functional way to define common properties between individual amino acids is to analyze the normalized frequencies of amino acid changes between corresponding proteins of homologous organisms (Schulz and Schirmer, Principles of Protein Structure, Springer-Verlag, New York (1979)). According to such analyses, groups of amino acids may be defined where amino acids within a group exchange preferentially with each other, and therefore resemble each other most in their impact on the overall protein structure (Schulz and Schirmer, supra).
[0034] Examples of conservative amino acid substitutions include substitutions of amino acids within the sub-groups described above, for example, lysine for arginine and vice versa such that a positive charge may be maintained, glutamic acid for aspartic acid and vice versa such that a negative charge may be maintained, serine for threonine such that a free -OH can be maintained, and glutamine for asparagine such that a free -NH2 can be maintained.
[0035] “Semi-conservative mutations” include amino acid substitutions of amino acids within the same groups listed above, but not within the same sub-group. For example, the substitution of aspartic acid for asparagine, or asparagine for lysine, involves amino acids within the same group, but different sub-groups. “Non-conservative mutations” involve amino acid substitutions between different groups, for example, lysine for tryptophan, or phenylalanine for serine, etc.
[0036] In addition, one or more amino acids can be inserted into the aforementioned immunoglobulin heavy chain polypeptides and/or light chain polypeptides. Any number of any suitable amino acids can be inserted into the amino acid sequence of the immunoglobulin heavy chain polypeptide and/or light chain polypeptide. In this respect, at least one amino acid (e.g., 2 or more, 5 or more, or 10 or more amino acids), but not more than 20 amino acids (e.g., 18 or less, 15 or less, or 12 or less amino acids), can be inserted into the amino acid sequence of the immunoglobulin heavy chain polypeptide and/or light chain polypeptide. Preferably, 1-10 amino acids (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acids) are inserted into the amino acid sequence of the immunoglobulin heavy chain polypeptide and/or light chain polypeptide. In this respect, the amino acid(s) can be inserted into any one of the
aforementioned immunoglobulin heavy chain polypeptides and/or light chain polypeptides in any suitable location. Preferably, the amino acid(s) are inserted into a CDR (e.g., CDR1, CDR2, or CDR3) of the immunoglobulin heavy chain polypeptide and/or light chain polypeptide.
[0037] The isolated immunoglobulin heavy chain polypeptide and light chain
polypeptides are not limited to polypeptides comprising the specific amino acid sequences described herein. Indeed, the immunoglobulin heavy chain polypeptide or light chain polypeptide can be any heavy chain polypeptide or light chain polypeptide that competes with the immunoglobulin heavy chain polypeptide or light chain polypeptide for binding to IL-33. In this respect, for example, the immunoglobulin heavy chain polypeptide or light chain polypeptide can be any heavy chain polypeptide or light chain polypeptide that binds to the same epitope of IL-33 recognized by the heavy and light chain polypeptides described herein. Antibody competition can be assayed using routine peptide competition assays which utilize ELISA, Western blot, or immunohistochemistry methods (see, e.g., U.S. Patents 4,828,981 and 8,568,992; and Braitbard et al, Proteome Sci., 4 : 12 (2006)).
[0038] Any amino acid residue of the immunoglobulin heavy chain polypeptide and/or the immunoglobulin light chain polypeptide can be replaced, in any combination, with a different amino acid residue, or can be deleted or inserted, so long as the biological activity of the IL-33-binding agent is enhanced or improved as a result of the amino acid replacements, insertions, and/or deletions. The“biological activity” of an IL-33-binding agent refers to, for example, binding affinity for a particular IL-33 epitope, neutralization or inhibition of IL-33 binding to its receptor(s), neutralization or inhibition of IL-33 activity in vivo (e.g., IC50), pharmacokinetics, and cross-reactivity (e.g., with non-human homologs or orthologs of the IL-33 protein, or with other proteins or tissues). Other biological properties or characteristics of an antigen-binding agent recognized in the art include, for example, avidity, selectivity, solubility, folding, immunotoxicity, expression, and formulation. The aforementioned properties or characteristics can be observed, measured, and/or assessed using standard techniques including, but not limited to, ELISA, competitive ELISA, surface plasmon resonance analysis (BIACORE™), or KINEXA™, in vitro or in vivo neutralization assays, receptor-ligand binding assays, cytokine or growth factor production and/or secretion assays, and signal transduction and immunohistochemistry assays.
[0039] The IL-33-binding agent preferably inhibits or neutralizes the activity of IL-33 by at least about 20%, about 30%, about 40%, about 50%, about 60%, about 70%, about 80%, about 90%, about 95%, about 100%, or a range defined by any two of the foregoing values. The terms“inhibit” or“neutralize,” as used herein with respect to the activity of a IL-33- binding agent, refer to the ability to substantially antagonize, prohibit, prevent, restrain, slow, disrupt, alter, eliminate, stop, or reverse the progression or severity of, for example, the biological activity of IL-33, or a disease or condition associated with IL-33.
[0040] The IL-33 binding agent can be a protein (e.g., an antibody or antibody fragment) comprising, consisting essentially of, or consisting of one or more of the immunoglobulin heavy chain polypeptides and/or one or more of the immunoglobulin light chain
polypeptides.
[0041] The IL-33-binding agent can be a whole antibody, as described herein, or an antibody fragment. The terms“fragment of an antibody,”“antibody fragment,” and “functional fragment of an antibody” are used interchangeably herein to mean one or more fragments of an antibody that retain the ability to specifically bind to an antigen (see, generally, Holliger et al, Nat. Biotech., 23(9): 1126-1129 (2005)). The isolated IL-33 binding agent can contain any IL-33-binding antibody fragment. The antibody fragment desirably comprises, for example, one or more CDRs, the variable region (or portions thereof), the constant region (or portions thereof), or combinations thereof. Examples of antibody fragments include, but are not limited to, (i) a Fab fragment, which is a monovalent fragment consisting of the VL, VH, CL, and CHi domains, (ii) a Ffab L fragment, which is a bivalent fragment comprising two Fab fragments linked by a disulfide bridge at the hinge region, (iii) a Fv fragment consisting of the VL and VH domains of a single arm of an antibody, (iv) a Fab’ fragment, which results from breaking the disulfide bridge of an F(ab’)2 fragment using mild reducing conditions, (v) a disulfide-stabilized Fv fragment (dsFv), and (vi) a domain antibody (dAb), which is an antibody single variable region domain (VH or VL) polypeptide that specifically binds antigen.
[0042] In embodiments where the IL-33-binding agent comprises a fragment of the immunoglobulin heavy chain or light chain polypeptide, the fragment can be of any size so long as the fragment binds to, and preferably inhibits the activity of, IL-33. In this respect, a fragment of the immunoglobulin heavy chain polypeptide desirably comprises between about 5 and 18 (e.g., about 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, or a range defined by any two of the foregoing values) amino acids. Similarly, a fragment of the immunoglobulin light chain polypeptide desirably comprises between about 5 and 18 (e.g., about 5, 6, 7, 8, 9, 10,
11, 12, 13, 14, 15, 16, 17, 18, or a range defined by any two of the foregoing values) amino acids.
[0043] When the IL-33-binding agent is an antibody or antibody fragment, the antibody or antibody fragment desirably comprises a heavy chain constant region (Fc) of any suitable class. Preferably, the antibody or antibody fragment comprises a heavy chain constant region that is based upon wild-type IgGl, IgG2, or IgG4 antibodies, or variants thereof.
[0044] The IL-33-binding agent also can be a single chain antibody fragment. Examples of single chain antibody fragments include, but are not limited to, (i) a single chain Fv (scFv), which is a monovalent molecule consisting of the two domains of the Fv fragment (i.e., VL and VH) joined by a synthetic linker which enables the two domains to be synthesized as a single polypeptide chain (see, e.g., Bird et al, Science, 242: 423-426 (1988); Huston et al, Proc. Natl. Acad. Sci. USA, 85: 5879-5883 (1988); and Osbourn et al., Nat. Biotechnol, 16: 778 (1998)) and (ii) a diabody, which is a dimer of polypeptide chains, wherein each polypeptide chain comprises a VH connected to a VL by a peptide linker that is too short to allow pairing between the VH and VL on the same polypeptide chain, thereby driving the pairing between the complementary domains on different VH -VL polypeptide chains to generate a dimeric molecule having two functional antigen binding sites. Antibody fragments are known in the art and are described in more detail in, e.g., U.S. Patent
Application Publication 2009/0093024 Al.
[0045] The IL-33-binding agent also can be an intrabody or fragment thereof. An intrabody is an antibody which is expressed and which functions intracellularly. Intrabodies typically lack disulfide bonds and are capable of modulating the expression or activity of target genes through their specific binding activity. Intrabodies include single domain fragments such as isolated VH and VL domains and scFvs. An intrabody can include sub- cellular trafficking signals atached to the N or C terminus of the intrabody to allow expression at high concentrations in the sub-cellular compartments where a target protein is located. Upon interaction with a target gene, an intrabody modulates target protein function and/or achieves phenotypic/functional knockout by mechanisms such as accelerating target protein degradation and sequestering the target protein in a non-physiological sub-cellular compartment. Other mechanisms of intrabody-mediated gene inactivation can depend on the epitope to which the intrabody is directed, such as binding to the catalytic site on a target protein or to epitopes that are involved in protein-protein, protein-DNA, or protein-RNA interactions.
[0046] The IL-33-binding agent also can be an antibody conjugate. In this respect, the isolated IL-33-binding agent can be a conjugate of (1) an antibody, an alternative scaffold, or fragments thereof, and (2) a protein or non-protein moiety comprising the IL-33-binding agent. For example, the IL-33-binding agent can be all or part of an antibody conjugated to a peptide, a fluorescent molecule, or a chemotherapeutic agent.
[0047] The IL-33-binding agent can be, or can be obtained from, a human antibody, a non-human antibody, or a chimeric antibody. By“chimeric” is meant an antibody or fragment thereof comprising both human and non-human regions. Preferably, the isolated IL-33-binding agent is a humanized antibody. A“humanized” antibody is a monoclonal antibody comprising a human antibody scaffold and at least one CDR obtained or derived from a non-human antibody. Non-human antibodies include antibodies isolated from any non-human animal, such as, for example, a rodent (e.g., a mouse or rat). A humanized antibody can comprise, one, two, or three CDRs obtained or derived from a non-human antibody. In one embodiment of the invention, CDRH3 of the IL-33-binding agent is obtained or derived from a mouse monoclonal antibody, while the remaining variable regions and constant region of the IL-33-binding agent are obtained or derived from a human monoclonal antibody.
[0048] A human antibody, a non-human antibody, a chimeric antibody, or a humanized antibody can be obtained by any means, including via in vitro sources (e.g., a hybridoma or a cell line producing an antibody recombinantly) and in vivo sources (e.g., rodents). Methods for generating antibodies are known in the art and are described in, for example, Kohler and Milstein, Eur. J. Immunol., 5: 511-519 (1976); Harlow and Lane (eds .), Antibodies: A Laboratory Manual, CSH Press (1988); and Janeway et al. (eds.), Immunobiology, 5th Ed., Garland Publishing, New York, NY (2001)). In certain embodiments, a human antibody or a chimeric antibody can be generated using a transgenic animal (e.g., a mouse) wherein one or more endogenous immunoglobulin genes are replaced with one or more human
immunoglobulin genes. Examples of transgenic mice wherein endogenous antibody genes are effectively replaced with human antibody genes include, but are not limited to, the Medarex HUMAB-MOUSE™, the Kirin TC MOUSE™, and the Kyowa Kirin KM- MOUSE™ (see, e.g., Lonberg , Nat. Biotechnol., 23(9): 1117-25 (2005), and Lonberg,
Handb. Exp. Pharmacol., 181: 69-97 (2008)). A humanized antibody can be generated using any suitable method known in the art (see, e.g., An, Z. (ed.), Therapeutic Monoclonal Antibodies: From Bench to Clinic, John Wiley & Sons, Inc., Hoboken, New Jersey (2009)), including, e.g., grafting of non-human CDRs onto a human antibody scaffold (see, e.g., Kashmiri et al. , Methods, 36( 1): 25-34 (2005); and Hou et al, J. Biochem., 144(1): 115-120 (2008)). In one embodiment, a humanized antibody can be produced using the methods described in, e.g., U.S. Patent Application Publication 2011/0287485 Al.
[0049] In one embodiment, a CDR (e.g., CDR1, CDR2, or CDR3) or a variable region of the immunoglobulin heavy chain polypeptide and/or the immunoglobulin light chain polypeptide described herein can be transplanted (i.e., grafted) into another molecule, such as an antibody or non-antibody polypeptide, using either protein chemistry or recombinant DNA technology.
[0050] The IL-33-binding agent can comprise at least one CDR of an immunoglobulin heavy chain and/or light chain polypeptide as described herein, which can be determined according to any available numbering system, such as Kabat, Chothia, Martin (Enhanced Chothia), Gelfand, Honneger's, or IMGT numbering systems (Wu et al, J Exp Med. (1970) 132:211-50; Chothia et al, JMol Biol. (1987) 196:901-17; Abhinandan et al. , Mol Immunol. (2008) 45:3832-9; Gelfand et al .; J Comput Biol. (1998) 5:467-77; Honegger et al, JMol Biol. (2001) 309:657-70; Lefranc, Immunol Today (1997) 18:509). The isolated IL-33- binding agent can comprise one, two, or three CDRs of an immunoglobulin heavy chain and/or light chain variable region as described herein. Identifying CDRs in a given immunoglobulin chain is within the skill of the ordinary artisan. For example, with respect to immunoglobulin heavy chain polypeptides comprising any one of SEQ ID NO: 1, SEQ ID NO: 2, or SEQ ID NOs: 5-50, the CDR1 is located between amino acid residues 26 and 35, inclusive; the CDR2 is located between amino acid residues 50 and 59, inclusive (SEQ ID NO: 1 and SEQ ID NO: 2) or between amino acid residues 50 and 66, inclusive (SEQ ID NOs: 5-50); and the CDR3 is located between amino acid residues 99 and 102, inclusive (SEQ ID NO: 1 and SEQ ID NO: 2) or between amino acid residues 99 and 111, inclusive (SEQ ID NOs 5-50). With respect to immunoglobulin light chain polypeptides comprising any one of SEQ ID NO: 3, SEQ ID NO: 4, and SEQ ID NO: 51-66, for example, the CDR1 is located between amino acid residues 24 and 39, inclusive (SEQ ID NO: 3 and SEQ ID NO:
4) or between amino acid residues 24 and 34, inclusive (SEQ ID NOs: 51-66); the CDR2 is located between amino acid residues 55 and 61, inclusive (SEQ ID NO: 3 and SEQ ID NO:
4) or between amino acid residues 50 and 56, inclusive (SEQ ID NOs: 51-66); the CDR3 is located between amino acid residues 94 and 102, inclusive (SEQ ID NO: 3 and SEQ ID NO: 4) or between amino acid residues 89 and 97, inclusive (SEQ ID NOs: 51-66). In an embodiment, the anti-IL-33 antibody comprises the CDRs of SEQ ID NO: 136 (heavy chain variable region) and SEQ ID NO: 171 (light chain variable region).
[0051] The term“nucleic acid sequence” is intended to encompass a polymer of DNA or RNA, i.e., a polynucleotide, which can be single-stranded or double-stranded and which can contain non-natural or altered nucleotides. The terms“nucleic acid” and“polynucleotide” as used herein refer to a polymeric form of nucleotides of any length, either ribonucleotides (RNA) or deoxyribonucleotides (DNA). These terms refer to the primary structure of the molecule, and thus include double- and single-stranded DNA, and double- and single- stranded RNA. The terms include, as equivalents, analogs of either RNA or DNA made from nucleotide analogs and modified polynucleotides such as, though not limited to, methylated and/or capped polynucleotides. Nucleic acids are typically linked via phosphate bonds to form nucleic acid sequences or polynucleotides, though many other linkages are known in the art (e.g., phosphorothioates, boranophosphates, and the like).
[0052] The IL-33 binding agent comprising one or more immunoglobulin heavy and/or light chains described herein can be provided using a nucleic acid encoding the polypeptides, optionally in a vector. The vector can be, for example, a plasmid, episome, cosmid, viral vector (e.g., retroviral or adenoviral), or phage. Suitable vectors and methods of vector preparation are well known in the art (see, e.g., Sambrook et al. , Molecular Cloning, a Laboratory Manual, 3rd edition, Cold Spring Harbor Press, Cold Spring Harbor, N.Y. (2001), and Ausubel et al, Current Protocols in Molecular Biology, Greene Publishing Associates and John Wiley & Sons, New York, N.Y. (1994)).
[0053] In addition to the nucleic acid sequence encoding the immunoglobulin heavy polypeptide, the immunoglobulin light chain polypeptide, and/or the IL-33-binding agent, the vector preferably comprises expression control sequences, such as promoters, enhancers, polyadenylation signals, transcription terminators, internal ribosome entry sites (IRES), and the like, that provide for the expression of the coding sequence in a host cell. Exemplary expression control sequences are known in the art and described in, for example, Goeddel, Gene Expression Technology: Methods in Enzymology, Vol. 185, Academic Press, San Diego, Calif. (1990).
[0054] A large number of promoters, including constitutive, inducible, and repressible promoters, from a variety of different sources are well known in the art. Representative sources of promoters include for example, virus, mammal, insect, plant, yeast, and bacteria, and suitable promoters from these sources are readily available, or can be made synthetically, based on sequences publicly available, for example, from depositories such as the ATCC as well as other commercial or individual sources. Promoters can be unidirectional (i.e., initiate transcription in one direction) or bi-directional (i.e., initiate transcription in either a 3’ or 5’ direction). Non-limiting examples of promoters include, for example, the T7 bacterial expression system, pBAD (araA) bacterial expression system, the cytomegalovirus (CMV) promoter, the SV40 promoter, the RSV promoter. Inducible promoters include, for example, the Tet system (U.S. Patents 5,464,758 and 5,814,618), the Ecdysone inducible system (No et al., Proc. Natl. Acad. Sci., 93: 3346-3351 (1996)), the T-REX™ system (Invitrogen,
Carlsbad, CA), LACSWITCH™ system (Stratagene, San Diego, CA), and the Cre-ERT tamoxifen inducible recombinase system (Indra et al, Nuc. Acid. Res., 27: 4324-4327 (1999); Nuc. Acid. Res., 28: e99 (2000); U.S. Patent 7,112,715; and Kramer & Fussenegger. Methods Mol. Biol., 308: 123-144 (2005)).
[0055] The term“enhancer” as used herein, refers to a DNA sequence that increases transcription of, for example, a nucleic acid sequence to which it is operably linked.
Enhancers can be located many kilobases away from the coding region of the nucleic acid sequence and can mediate the binding of regulatory factors, patterns of DNA methylation, or changes in DNA structure. A large number of enhancers from a variety of different sources are well known in the art and are available as or within cloned polynucleotides (from, e.g., depositories such as the ATCC as well as other commercial or individual sources). A number of polynucleotides comprising promoters (such as the commonly -used CMV promoter) also comprise enhancer sequences. Enhancers can be located upstream, within, or downstream of coding sequences.
[0056] The vector also can comprise a“selectable marker gene.” The term“selectable marker gene,” as used herein, refers to a nucleic acid sequence that allow cells expressing the nucleic acid sequence to be specifically selected for or against, in the presence of a corresponding selective agent. Suitable selectable marker genes are known in the art and described in, e.g., International Patent Application Publications WO 1992/008796 and WO 1994/028143; Wigler et al, Proc. Natl. Acad. Sci. USA, 77: 3567-3570 (1980); O'Hare et al, Proc. Natl. Acad. Sci. USA, 78: 1527-1531 (1981); Mulligan & Berg, Proc. Natl. Acad. Sci. USA, 78: 2072-2076 (1981); Colberre-Garapin et al. , J. Mol. Biol., 150: 1-14 (1981); Santerre et al, Gene, 30: 147-156 (1984); Kent et al., Science, 237: 901-903 (1987); Wigler et al,
Cell, 11: 223-232 (1977); Szybalska & Szybalski, Proc. Natl. Acad. Sci. USA, 48: 2026-2034 (1962); Lowy et al, Cell, 22: 817-823 (1980); and U.S. Patents 5,122,464 and 5,770,359.
[0057] In some embodiments, the vector is an“episomal expression vector” or “episome,” which is able to replicate in a host cell, and persists as an extrachromosomal segment of DNA within the host cell in the presence of appropriate selective pressure (see, e.g., Conese et al, Gene Therapy, 11: 1735-1742 (2004)). Representative commercially available episomal expression vectors include, but are not limited to, episomal plasmids that utilize Epstein Barr Nuclear Antigen 1 (EBNA1) and the Epstein Barr Virus (EBV) origin of replication (oriP). The vectors pREP4, pCEP4, pREP7, and pcDNA3.1 from Invitrogen (Carlsbad, CA) and pBK-CMV from Stratagene (La Jolla, CA) represent non-limiting examples of an episomal vector that uses T-antigen and the SV40 origin of replication in lieu of EBNA1 and oriP.
[0058] Other suitable vectors include integrating expression vectors, which may randomly integrate into the host cell’s DNA, or may include a recombination site to enable the specific recombination between the expression vector and the host cell’s chromosome. Such integrating expression vectors may utilize the endogenous expression control sequences of the host cell’s chromosomes to effect expression of the desired protein. Examples of vectors that integrate in a site specific manner include, for example, components of the flp-in system from Invitrogen (Carlsbad, CA) (e.g., pcDNA™5/FRT), or the cre-lox system, such as can be found in the pExchange-6 Core Vectors from Stratagene (La Jolla, CA). Examples of vectors that randomly integrate into host cell chromosomes include, for example, pcDNA3.l (when introduced in the absence of T-antigen) from Life Technologies (Carlsbad, CA), UCOE from Millipore (Billerica, MA), and pCI or pFNlOA (ACT) FLEXI™ from Promega (Madison, WI).
[0059] Viral vectors also can be used. Representative commercially available viral expression vectors include, but are not limited to, the adenovirus-based Per.C6 system available from Crucell, Inc. (Leiden, The Netherlands), the lenti viral-based pLPl from Invitrogen (Carlsbad, CA), and the retroviral vectors pFB-ERV plus pCFB-EGSH from Stratagene (La Jolla, CA).
[0060] Nucleic acid sequences encoding the amino acid sequences described herein can be provided to a cell on the same vector (i.e., in cis). A unidirectional promoter can be used to control expression of each nucleic acid sequence. In another embodiment, a combination of bidirectional and unidirectional promoters can be used to control expression of multiple nucleic acid sequences. Nucleic acid sequences encoding the amino acid sequences described herein alternatively can be provided to the population of cells on separate vectors (i.e., in trans). Each of the nucleic acid sequences in each of the separate vectors can comprise the same or different expression control sequences. The separate vectors can be provided to cells simultaneously or sequentially.
[0061] The vector(s) comprising the nucleic acid(s) encoding the amino acid sequences described herein can be introduced into a host cell that is capable of expressing the polypeptides encoded thereby, including any suitable prokaryotic or eukaryotic cell.
Preferred host cells are those that can be easily and reliably grown, have reasonably fast growth rates, have well characterized expression systems, and can be transformed or transfected easily and efficiently.
[0062] Examples of suitable prokaryotic cells include, but are not limited to, cells from the genera Bacillus (such as Bacillus subtilis and Bacillus brevis), Escherichia (such as E. coli ), Pseudomonas, Streptomyces , Salmonella, and Erwinia. Particularly useful prokaryotic cells include the various strains of Escherichia coli (e.g., K12, HB101 (ATCC No. 33694), DH5a, DH10, MC1061 (ATCC No. 53338), and CC102). [0063] Preferably, the vector is introduced into a eukaryotic cell. Suitable eukaryotic cells are known in the art and include, for example, yeast cells, insect cells, and mammalian cells. Examples of suitable yeast cells include those from the genera Kluyveromyces, Pichia, Rhino-sporidium, Saccharomyces, and Schizosaccharomyces. Preferred yeast cells include, for example, Saccharomyces cerivisae and Pichia pastoris.
[0064] Suitable insect cells are described in, for example, Kitts et al, Biotechniques, 14: 810-817 (1993); Lucklow, Curr. Opin. Biotechnol, 4: 564-572 (1993); and Lucklow et al, J. Virol., 67: 4566-4579 (1993). Preferred insect cells include Sf-9 and HI5 (Invitrogen, Carlsbad, CA).
[0065] Preferably, mammalian cells are utilized. A number of suitable mammalian host cells are known in the art, and many are available from the American Type Culture
Collection (ATCC, Manassas, VA). Examples of suitable mammalian cells include, but are not limited to, Chinese hamster ovary cells (CHO) (ATCC No. CCL61), CHO DHFR-cells (Urlaub et al, Proc. Natl. Acad. Sci. USA, 97: 4216-4220 (1980)), human embryonic kidney (HEK) 293 or 293T cells (ATCC No. CRL1573), and 3T3 cells (ATCC No. CCL92). Other suitable mammalian cell lines are the monkey COS-l (ATCC No. CRL1650) and COS-7 cell lines (ATCC No. CRL1651), as well as the CV-l cell line (ATCC No. CCL70). Further exemplary mammalian host cells include primate cell lines and rodent cell lines, including transformed cell lines. Normal diploid cells, cell strains derived from in vitro culture of primary tissue, as well as primary explants, are also suitable. Other suitable mammalian cell lines include, but are not limited to, mouse neuroblastoma N2A cells, HeLa, mouse L-929 cells, and BHK or HaK hamster cell lines, all of which are available from the ATCC.
Methods for selecting suitable mammalian host cells and methods for transformation, culture, amplification, screening, and purification of cells are known in the art.
[0066] Most preferably, the mammalian cell is a human cell. For example, the mammalian cell can be a human lymphoid or lymphoid derived cell line, such as a cell line of pre-B lymphocyte origin. Examples of human lymphoid cells lines include, without limitation, RAMOS (CRL-1596), Daudi (CCL-213), EB-3 (CCL-85), DT40 (CRL-2111), 18- 81 (Jack et al, Proc. Natl. Acad. Sci. USA, 85: 1581-1585 (1988)), Raji cells (CCL-86), and derivatives thereof.
[0067] A nucleic acid sequence encoding the amino acid sequence may be introduced into a cell by“transfection,”“transformation,” or“transduction.”“Transfection,” “transformation,” or“transduction,” as used herein, refer to the introduction of one or more exogenous polynucleotides into a host cell by using physical or chemical methods. Many transfection techniques are known in the art and include, for example, calcium phosphate DNA co-precipitation (see, e.g., Murray E.J. (ed.). Methods in Molecular Biology, Vol. 7, Gene Transfer and Expression Protocols, Humana Press (1991)); DEAE-dextran;
electroporation; cationic liposome-mediated transfection; tungsten particle-facilitated microparticle bombardment (Johnston, Nature, 346: 776-777 (1990)); and strontium phosphate DNA co-precipitation (Brash et al, Mol. Cell Biol., 7: 2031-2034 (1987)). Phage or viral vectors can be introduced into host cells, after growth of infectious particles in suitable packaging cells, many of which are commercially available.
[0068] The IL-33 inhibitor may be administered as part of a composition. Preferably, the composition is a pharmaceutically acceptable (e.g., physiologically acceptable) composition, and comprises a carrier, preferably a pharmaceutically acceptable (e.g., physiologically acceptable) carrier. Any suitable carrier can be used within the context of the invention, and such carriers are well known in the art. The choice of carrier will be determined, in part, by the particular site to which the composition may be administered and the particular method used to administer the composition. The composition optionally can be sterile. The composition can be frozen or lyophilized for storage and reconstituted in a suitable sterile carrier prior to use. The compositions can be generated in accordance with conventional techniques described in, e.g., Remington: The Science and Practice of Pharmacy, 21st Edition, Lippincott Williams & Wilkins, Philadelphia, PA (2001).
[0069] As used herein, the terms“treatment,”“treating,” and the like refer to obtaining a desired pharmacologic and/or physiologic effect, e.g., inhibiting or preventing an allergic reaction. Preferably, the effect is therapeutic, i.e., the effect partially or completely cures a disease and/or adverse symptom attributable to the disease. To this end, the inventive method comprises administering a“therapeutically effective amount” of the IL-33 inhibitor. A “therapeutically effective amount” refers to an amount effective, at dosages and for periods of time necessary, to achieve a desired therapeutic result. The therapeutically effective amount may vary according to factors such as the disease state, age, sex, and weight of the individual, and the ability of the IL-33 inhibitor to elicit a desired response in the individual. For example, a therapeutically effective amount of a composition is an amount which decreases IL-33 bioactivity in a mammal or human. [0070] Alternatively, the pharmacologic and/or physiologic effect may be prophylactic, i.e., the effect completely or partially prevents a disease or symptom thereof. In this respect, the inventive method comprises administering a“prophylactically effective amount” of the IL-33 inhibitor. A“prophylactically effective amount” refers to an amount effective, at dosages and for periods of time necessary, to achieve a desired prophylactic result (e.g., prevention of disease onset).
[0071] The IL-33 inhibitor can be administered to the patient using standard
administration techniques, including oral, intravenous, intraperitoneal, subcutaneous, pulmonary, transdermal, intramuscular, intranasal, buccal, sublingual, or suppository administration. The composition preferably is suitable for parenteral administration. The term“parenteral,” as used herein, includes intravenous, intramuscular, subcutaneous, rectal, vaginal, and intraperitoneal administration. More preferably, the composition is administered using peripheral systemic delivery by intravenous, intraperitoneal, or subcutaneous injection.
[0072] The IL-33 inhibitor also can be administered by introducing a nucleic acid encoding the IL-33 inhibitor to the mammal, whereby the IL-33 inhibitor is expressed in the mammal. The nucleic acid encoding the IL-33 inhibitor can be in a vector, as described herein with respect to other embodiments. Furthermore, the nucleic acid encoding the IL-33 inhibitor can be administered directly to the mammal, or administered to a cell (e.g., an autologous cell) to provide a transformed cell that expresses the IL-33 inhibitor, and the transformed cell can then be administered to the mammal. In addition, or alternatively, IL-33 inhibition may be achieved by introduction or deletion of genetic material that modulates the expression of IL-33. Techniques for administering nucleic acids to mammals and cells to express proteins, techniques for transforming cells and administering transformed cells to mammals, and techniques for deleting genetic material are known in the art.
[0073] Once administered to a mammal (e.g., a cross-reactive human), the biological activity of the IL-33 inhibitor can be measured by any suitable method known in the art. For example, the biological activity can be assessed by determining the stability of a particular IL-33 inhibitor. In one embodiment of the invention, the IL-33 inhibitor (e.g., an antibody) has an in vivo half life between about 30 minutes and 45 days (e.g., about 30 minutes, about 45 minutes, about 1 hour, about 2 hours, about 4 hours, about 6 hours, about 10 hours, about 12 hours, about 1 day, about 5 days, about 10 days, about 15 days, about 25 days, about 35 days, about 40 days, about 45 days, or a range defined by any two of the foregoing values). In another embodiment, the IL-33 inhibitor has an in vivo half life between about 2 hours and 20 days (e.g., about 5 hours, about 10 hours, about 15 hours, about 20 hours, about 2 days, about 3 days, about 7 days, about 12 days, about 14 days, about 17 days, about 19 days, or a range defined by any two of the foregoing values). In another embodiment, the IL-33 inhibitor has an in vivo half life between about 10 days and about 40 days (e.g., about 10 days, about 13 days, about 16 days, about 18 days, about 20 days, about 23 days, about 26 days, about 29 days, about 30 days, about 33 days, about 37 days, about 38 days, about 39 days, about 40 days, or a range defined by any two of the foregoing values).
[0074] The biological activity of a particular IL-33-binding agent also can be assessed by determining its binding affinity to IL-33 or an epitope thereof. The term“affinity” refers to the equilibrium constant for the reversible binding of two agents and is expressed as the dissociation constant (KD). Affinity of a binding agent to a ligand, such as affinity of an antibody for an epitope, can be, for example, from about 1 femtomolar (fM) to about 100 micromolar (mM) (e.g., from about 1 fM to about 1 picomolar (pM), from about 1 pM to about 1 nanomolar (nM), from about 1 nM to about 1 micromolar (mM), or from about 1 mM to about 100 pM). In one embodiment, the IL-33-binding agent can bind to an IL-33 protein with a KD less than or equal to 1 nanomolar (e.g., 0.9 nM, 0.8 nM, 0.7 nM, 0.6 nM, 0.5 nM, 0.4 nM, 0.3 nM, 0.2 nM, 0.1 nM, 0.05 nM, 0.025 nM, 0.01 nM, 0.001 nM, or a range defined by any two of the foregoing values). In another embodiment, the IL-33-binding agent can bind to IL-33 with a KD less than or equal to 200 pM (e.g., 190 pM, 175 pM, 150 pM, 125 pM, 110 pM, 100 pM, 90 pM, 80 pM, 75 pM, 60 pM, 50 pM, 40 pM, 30 pM, 25 pM, 20 pM, 15 pM, 10 pM, 5 pM, 1 pM, or a range defined by any two of the foregoing values).
Immunoglobulin affinity for an antigen or epitope of interest can be measured using any art- recognized assay. Such methods include, for example, fluorescence activated cell sorting (FACS), separable beads (e.g., magnetic beads), surface plasmon resonance (SPR), solution phase competition (KINEXA™), antigen panning, and/or ELISA (see, e.g., Janeway et al. (eds.), Immunobiology, 5th ed., Garland Publishing, New York, NY, 2001).
[0075] The IL-33 inhibitor may be administered alone or in combination with other drugs (e.g., as an adjuvant). For example, other agents for the treatment or prevention of allergic reactions can be used. Such agents include antihistamines, other anti-inflammatory agents, such as corticosteroids (e.g., prednisone and fluticasone) and non-steroidal anti-inflammatory drugs (NSAIDs) (e.g., aspirin, ibuprofen, and naproxen). [0076] The following examples are intended to illustrate the invention, but do not limit the scope of the invention otherwise described.
EXAMPLE
[0077] The example further demonstrates that the IL-33 inhibitor of the present invention improves peanut tolerance in patients with peanut allergies.
[0078] 20 severe adult peanut allergy patients with a documented clinical history of anaphylaxis were enrolled in the study. The baseline peanut tolerance of each patient was determined upon enrollment using a double-blinded, placebo-controlled oral food challenge (OFC) according to PRACTALL guidelines (e.g., Sampson et al, J. Allergy Clin. Immunol., 130(6): 1260-1274 (2012)), and as detailed in Example 1. On day 1, patients were randomized on a 3: 1 ratio to receive a single intravenous dose of either 300 mg/lOOmL of ANB020 or 100 mL of 0.9% sodium chloride (i.e., a placebo). The OFC was repeated at days 15 and 45.
[0079] In particular, escalating doses of peanut protein consisted of 5, 20, 50, 100, 100, 100, and 125 mg, which resulted in a cumulative maximum dose of 500 mg. Symptoms were monitored using the OFC Symptom Scoring Assessment Tool (e.g., Sampson et al, J. Allergy Clin. Immunol., 130(6): 1260-1274 at Fig. 3 (2012)) and other safety assessments (e.g., Modified Bock’s criteria) were performed. The total cumulative tolerated dose of blinded
peanut/placebo tolerated and dosing step/threshold reached prior to reaction were recorded.
[0080] The anti-IL-33 antibbody used contained the following sequences:
Anti-IL-33 Antibody (IgGl)
Figure imgf000027_0001
At baseline, all 20 participants (i.e., both active and placebo group) failed a standardized OFC. “Pass” was defined as no objective reactions to a food challenge to at least 275 mg peanut protein, which is the clinical threshold for contamination amounts of peanut. Fifteen days post treatment, 10/15 (67%) of the active group and 0/5 (0%) of the placebo group passed OFC, indicating a significant increase in tolerance to peanut protein after a single intravenous administration of ANB020. At 45 days post treatment, 57% of participants continued to pass the OFC indicating good persistence of effect.
[0081] Skin prick testing was also performed on the flexor surface of the forearm utilizing standard testing procedures recommended by the American Academy of Allergy, Asthma, and Immunology and the American College of Allergy, Asthma, and Immunology Joint Practice Parameter on Allergy Diagnostic Testing. Peanut allergy was tested in the form of a commercial extract with appropriate positive and negative controls. The orthogonal diameter of the resulting wheal was measured at the mid-point of the longest axis, and the average of the longest axis and the orthogonal diameter was recorded. During screening, the negative control wheal had to be <2 mm for the test to be considered valid. If the negative control was >2 mm, the test was repeated on another day. A wheal that was >3 mm of the negative control was considered to be positive.
[0082] Peanut specific wheal size was assessed at baseline, day 15 and day 45 for placebo and ANB020 dosed patients. All patients dosed with ANB020 demonstrated a significant reduction in peanut wheal size at day 15 relative to baseline, which returned to around baseline levels at day 45. No significant change was observed among placebo patients.
[0083] Histamine skin prick testing was also performed on the flexor surface of the forearm utilizing standard testing procedures recommended by the American Academy of Allergy, Asthma, and Immunology and the American College of Allergy, Asthma, and Immunology Joint Practice Parameter on Allergy Diagnostic Testing, as similary described above for the peanut allergy testing. A commercial extract of histamine dihydrochloride 10 mg/ml was used for testing.
[0084] Histamine specific wheal size was assessed at baseline, day 15, and day 45 for placebo and ANB020 dosed patients. Similar to the results in the peanut allergy test, all patients dosed with ANB020 demonstrated a significant reduction in histamine wheal size at day 15 relative to baseline, which returned to around baseline levels at day 45. No significant change was observed among placebo patients. [0085] Peanut specific IgE was also measured using standard methodology
(IMMUNOCAP® by Quest Diagnostics) at baseline, day 15, and day 45 for both placebo and ANB020 dosed patients. Peanut specific IgE levels were decreased at day 15 relative to baseline in the ANB020 dosed patient group. Placebo dosed patients did not demonstrate any significant reduction in peanut specific IgE relative to baseline.
[0086] Therefore, the data described herein demonstrates that an IL-33 inhibitor can reduce the severity of, or prevent, an allergic reaction to peanut allergen.
[0087] All references, including publications, patent applications, and patents, cited herein are hereby incorporated by reference to the same extent as if each reference were individually and specifically indicated to be incorporated by reference and were set forth in its entirety herein.
[0088] The use of the terms“a” and“an” and“the” and“at least one” and similar referents in the context of describing the invention (especially in the context of the following claims) are to be construed to cover both the singular and the plural, unless otherwise indicated herein or clearly contradicted by context. The use of the term“at least one” followed by a list of one or more items (for example,“at least one of A and B”) is to be construed to mean one item selected from the listed items (A or B) or any combination of two or more of the listed items (A and B), unless otherwise indicated herein or clearly contradicted by context. The terms“comprising,”“having,”“including,” and“containing” are to be construed as open-ended terms (i.e., meaning“including, but not limited to,”) unless otherwise noted. Recitation of ranges of values herein are merely intended to serve as a shorthand method of referring individually to each separate value falling within the range, unless otherwise indicated herein, and each separate value is incorporated into the specification as if it were individually recited herein. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (e.g.,“such as”) provided herein, is intended merely to better illuminate the invention and does not pose a limitation on the scope of the invention unless otherwise claimed. No language in the specification should be construed as indicating any non-claimed element as essential to the practice of the invention. [0089] Preferred embodiments of this invention are described herein, including the best mode known to the inventors for carrying out the invention. Variations of those preferred embodiments may become apparent to those of ordinary skill in the art upon reading the foregoing description. The inventors expect skilled artisans to employ such variations as appropriate, and the inventors intend for the invention to be practiced otherwise than as specifically described herein. Accordingly, this invention includes all modifications and equivalents of the subject matter recited in the claims appended hereto as permitted by applicable law. Moreover, any combination of the above-described elements in all possible variations thereof is encompassed by the invention unless otherwise indicated herein or otherwise clearly contradicted by context.

Claims

CLAIMS:
1. A method of inhibiting or preventing an allergic reaction to peanut allergen in a patient, the method comprising administering to the patient about 50-1000 mg of an IL-33 inhibitor not more than once every 14 days or once every 30 days.
2. The method of claim 1, wherein the method comprises administering to the patient about 100-300 mg of an IL-33 inhibitor as a single dose given not more than once every 14 days or once every 30 days.
3. The method of claim 1, wherein the method comprises administering to the patient about 150 mg of an IL-33 inhibitor as a single dose given not more than once every 14 days or once every 30 days.
4. The method of claim 1, wherein the IL-33 inhibitor is administered intravenously or subcutaneously.
5. The method of claim 1, wherein the patient exhibits a moderate to severe allergic reaction within 24 hours after oral administration of peanut protein in the absence of treatment with an IL-33 inhibitor.
6. The method of claim 1, wherein the method further comprises, prior to administration of the IL-33 inhibitor, orally administering peanut protein to the patient and selecting the patient for administration of the IL-33 inhibitor if the patient exhibits a moderate to severe allergic reaction within 24 hours.
7. The method of claim 5, wherein the peanut protein is administered in an amount of about 25-2000 mg.
8. A method of inhibiting or preventing an allergic reaction to peanut allergen in a patient who exhibits a moderate to severe allergic reaction within 24 hours of oral administration of 2000 mg or less of peanut protein in the absence of treatment, the method comprising administering to the patient an IL-33 inhibitor.
9. The method of claim 8, wherein the method comprises, prior to administration of the IL-33 inhibitor, orally administering up to 2000 mg of peanut protein to the patient and selecting the patient for administration of the IL-33 inhibitor if the patient exhibits a moderate to severe allergic reaction within 24 hours.
10. The method of claim 8, wherein about 50-1000 mg of the IL-33 inhibitor is administered to the patient as a single dose given not more than once every 14 days or once every 30 days.
11. The method of claim 8, wherein about 100-300 mg of the IL-33 inhibitor is administered to the patient as a single dose given not more than once every 14 days or once every 30 days.
12. The method of claim 8, wherein about 150 mg of the IL-33 inhibitor is administered to the patient as a single dose given not more than once every 14 days or once every 30 days.
13. The method of claim 1, wherein the IL-33 inhibitor is administered intravenously or subcutaneously.
14. The method of claim 1, wherein, prior to administration of the IL-33 inhibitor, the patient exhibits a moderate to severe allergic reaction within 24 hours after oral administration of a dose of peanut protein, and within 30 days after administration of the IL- 33 inhibitor, the patient does not exhibit a moderate to severe allergic reaction after oral administration of peanut protein in the same amount that caused a moderate to severe allergic reaction in the patient prior to administration of the IL-33 inhibitor.
15. The method of claim 1, wherein the allergic reaction is asthma, atopic dermatitis, or a combination thereof.
16. The method of claim 1, wherein the IL-33 inhibitor is an anti-IL-33 antibody or antibody fragment.
17. The method of any of claim 16, wherein the IL-33-inhibitor is an F(ab’)2,
Fab’, Fab, Fv, scFv, dsFv, dAb, or a single chain binding polypeptide.
18. The method of claim 16, wherein the anti-IL-33 antibody or antibody fragment compnses: (a) an immunoglobulin heavy chain amino acid sequence of any one of SEQ ID NO:
1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217, (b) an immunoglobulin heavy chain amino acid sequence that is at least 90% identical to any one of SEQ ID NO: 1, SEQ ID NO:
2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217; or (c) an immunoglobulin heavy chain polypeptide which binds to the same IL-33 epitope as the immunoglobulin heavy chain polypeptide of (a) or (b); and/or
(a) an immunoglobulin light chain amino acid sequence of any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231, (b) an immunoglobulin light chain amino acid sequence that is at least 90% identical to any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231; or (c) an
immunoglobulin light chain amino acid sequence which binds to the same IL-33 epitope as the immunoglobulin light chain polypeptide of (a) or (b).
19. The method of claim 16, wherein the IL-33 inhibitor comprises the complementarity determining regions (CDRs) of the immunoglobulin heavy chain variable region of any of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, or SEQ ID NOs: 206-217; and/or the CDRs of the immunoglobulin light chain variable region of any of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, or SEQ ID NOs: 218-231.
20. The method of claim 16, wherein the IL-33 inhibitor comprises the CDRs of the immunoglobulin heavy chain variable region of SEQ ID NO: 136, and the CDRs of the immunoglobulin light chain variable region of SEQ ID NO: 171.
21. The method of claim 20, wherein the IL-33 inhibitor comprises the immunoglobulin heavy chain variable region of SEQ ID NO: 136 and the immunoglobulin light chain variable region of SEQ ID NO: 171.
22. The method of claim 1, wherein the half-life of the IL-33 inhibitor in the patient is between 30 minutes and 45 days.
23. The method of claim 1, wherein the IL-33 inhibitor binds to IL-33 with a KD between about 1 femtomolar (fM) and about 100 micromolar (mM).
24. A pharmaceutical composition comprising an IL-33 inhibitor for the treatment of an allergic reaction according to the method of any of claims 1-23.
25. The method of claim 1, wherein the method comprises administering to the patient the IL-33 inhibitor not more than once every 30 days.
26. The method of claim 1, wherein the method comprises administering to the patient the IL-33 inhibitor not more than once every 60 days.
27. The method of claim 1, wherein the method comprises administering to the patient the IL-33 inhibitor not more than once every 90 days.
28. An IL-33 inhibitor for inhibiting or preventing an allergic reaction to peanut allergen in a patient, wherein the IL-33 inhibitor is for administration to the patient in an amount of about 50-1000 mg not more than once every 14 days or once every 30 days.
29. The IL-33 inhibitor of claim 28, wherein the IL-33 inhibitor is for administration to the patient in an amount of about 100-300 mg as a single dose given not more than once every 14 days or once every 30 days.
30. The IL-33 inhibitor of claim 28, wherein the method comprises administering to the patient about 150 mg of an IL-33 inhibitor as a single dose given not more than once every 14 days or once every 30 days.
31. The IL-33 inhibitor of any of any of claims 28-30, wherein the IL-33 inhibitor is for administration intravenously or subcutaneously.
32. The IL-33 inhibitor of any of any of claims 28-31, wherein the patient exhibits a moderate to severe allergic reaction within 24 hours after oral administration of peanut protein in the absence of treatment with an IL-33 inhibitor.
33. The IL-33 inhibitor of any of any of claims 28-32, wherein the peanut protein is administered in an amount of about 25-2000 mg.
34. An IL-33 inhibitor for inhibiting or preventing an allergic reaction to peanut allergen in a patient who exhibits a moderate to severe allergic reaction within 24 hours of oral administration of 2000 mg or less of peanut protein in the absence of treatment.
35. The IL-33 inhibitor of claim 34 for administration to the patient in an amount of about 50-1000 mg as a single dose given not more than once every 14 days or once every 30 days.
36. The IL-33 inhibitor of claim 34 for administration to the patient in an amount of about 100-300 mg as a single dose given not more than once every 14 days or once every 30 days.
37. The IL-33 inhibitor of claim 34 for administration to the patient in an amount of about 150 mg as a single dose given not more than once every 14 days or once every 30 days.
38. The IL-33 inhibitor of any of claims 28-37, wherein the IL-33 inhibitor is formulated for administration intravenously or subcutaneously.
39. The IL-33 inhibitor of any of claims 28-38, wherein, prior to administration of the IL-33 inhibitor, the patient exhibits a moderate to severe allergic reaction within 24 hours after oral administration of a dose of peanut protein, and within 30 days after administration of the IL-33 inhibitor, the patient does not exhibit a moderate to severe allergic reaction after oral administration of peanut protein in the same amount that caused a moderate to severe allergic reaction in the patient prior to administration of the IL-33 inhibitor.
40. The IL-33 inhibitor of any of claims 28-39, wherein the allergic reaction is asthma, atopic dermatitis, or a combination thereof.
40. The IL-33 inhibitor of any of claims 28-40, wherein the IL-33 inhibitor is an anti -IL-33 antibody or antibody fragment.
41. The IL-33 inhibitor of claim 40, wherein the IL-33 -inhibitor is an F(ab’)2,
Fab’, Fab, Fv, scFv, dsFv, dAb, or a single chain binding polypeptide.
42. The IL-33 inhibitor of claim 40 or 41, wherein the anti-IL-33 antibody or antibody fragment comprises: (a) an immunoglobulin heavy chain amino acid sequence of any one of SEQ ID NO:
1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217, (b) an immunoglobulin heavy chain amino acid sequence that is at least 90% identical to any one of SEQ ID NO: 1, SEQ ID NO:
2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217; or (c) an immunoglobulin heavy chain polypeptide which binds to the same IL-33 epitope as the immunoglobulin heavy chain polypeptide of (a) or (b); and/or
(a) an immunoglobulin light chain amino acid sequence of any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231, (b) an immunoglobulin light chain amino acid sequence that is at least 90% identical to any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231; or (c) an
immunoglobulin light chain amino acid sequence which binds to the same IL-33 epitope as the immunoglobulin light chain polypeptide of (a) or (b).
43. The IL-33 inhibitor of claim 40 or 41, wherein the IL-33 inhibitor comprises the complementarity determining regions (CDRs) of the immunoglobulin heavy chain variable region of any of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, or SEQ ID NOs: 206- 217; and/or the CDRs of the immunoglobulin light chain variable region of any of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, or SEQ ID NOs: 218-231.
44. The IL-33 inhibitor of claim 40 or 41, wherein the IL-33 inhibitor comprises the CDRs of the immunoglobulin heavy chain variable region of SEQ ID NO: 136, and the CDRs of the immunoglobulin light chain variable region of SEQ ID NO: 171.
45. The IL-33 inhibitor of claim 40 or 41, wherein the IL-33 inhibitor comprises the immunoglobulin heavy chain variable region of SEQ ID NO: 136 and the
immunoglobulin light chain variable region of SEQ ID NO: 171.
46. The IL-33 inhibitor of any of claims 28-45, wherein the half-life of the IL-33 inhibitor in the patient is between 30 minutes and 45 days.
47. The IL-33 inhibitor of any of claims 28-46, wherein the IL-33 inhibitor binds to IL-33 with a KD between about 1 femtomolar (fM) and about 100 micromolar (mM).
48. The IL-33 inhibitor of any of claims 28-47, wherein the IL-33 inhibitor is for administration to the patient not more than once every 30 days.
49. The IL-33 inhibitor of any of claims 28-47, wherein the IL-33 inhibitor is for administration to the patient not more than once every 60 days.
50. The IL-33 inhibitor of any of claims 28-47, wherein the IL-33 inhibitor is for administration to the patient not more than once every 90 days.
51. A method of inhibiting or preventing an allergic reaction to peanut allergen in a patient, the method comprising administering to the patient about 50-1000 mg of an IL-33 inhibitor not more than once every 14 days or once every 30 days.
52. The method of claim 51, wherein the method comprises administering to the patient about 100-300 mg of an IL-33 inhibitor as a single dose given not more than once every 14 days or once every 30 days.
53. The method of claim 51, wherein the method comprises administering to the patient about 150 mg of an IL-33 inhibitor as a single dose given not more than once every 14 days or once every 30 days.
54. The method of any of claims 51-53, wherein the IL-33 inhibitor is
administered intravenously or subcutaneously.
55. The method of any of claims 51-54, wherein the patient exhibits a moderate to severe allergic reaction within 24 hours after oral administration of peanut protein in the absence of treatment with an IL-33 inhibitor.
56. The method of any of claims 51-55, wherein the method further comprises, prior to administration of the IL-33 inhibitor, orally administering peanut protein to the patient and selecting the patient for administration of the IL-33 inhibitor if the patient exhibits a moderate to severe allergic reaction within 24 hours.
57. The method of claim 55 or 56, wherein the peanut protein is administered in an amount of about 25-2000 mg.
58. A method of inhibiting or preventing an allergic reaction to peanut allergen in a patient who exhibits a moderate to severe allergic reaction within 24 hours of oral administration of 2000 mg or less of peanut protein in the absence of treatment, the method comprising administering to the patient an IL-33 inhibitor.
59. The method of claim 58, wherein the method comprises, prior to
administration of the IL-33 inhibitor, orally administering up to 2000 mg of peanut protein to the patient and selecting the patient for administration of the IL-33 inhibitor if the patient exhibits a moderate to severe allergic reaction within 24 hours.
60. The method of claim 58 or 59, wherein about 50-1000 mg of the IL-33 inhibitor is administered to the patient as a single dose given not more than once every 14 days or once every 30 days.
61. The method of claim 58 or 59, wherein about 100-300 mg of the IL-33 inhibitor is administered to the patient as a single dose given not more than once every 14 days or once every 30 days.
62. The method of claim 58 or 59, wherein about 150 mg of the IL-33 inhibitor is administered to the patient as a single dose given not more than once every 14 days or once every 30 days.
63. The method of any of claims 51-62, wherein the IL-33 inhibitor is administered intravenously or subcutaneously.
64. The method of any of claims 51-63, wherein, prior to administration of the IL- 33 inhibitor, the patient exhibits a moderate to severe allergic reaction within 24 hours after oral administration of a dose of peanut protein, and within 30 days after administration of the IL-33 inhibitor, the patient does not exhibit a moderate to severe allergic reaction after oral administration of peanut protein in the same amount that caused a moderate to severe allergic reaction in the patient prior to administration of the IL-33 inhibitor.
65. The method of any of claims 51-64, wherein the allergic reaction is asthma, atopic dermatitis, or a combination thereof.
66. The method of any of claims 51-65, wherein the IL-33 inhibitor is an anti-IL- 33 antibody or antibody fragment.
67. The method of claim 66, wherein the IL-33-inhibitor is an F(ab’)2, Fab’, Fab, Fv, scFv, dsFv, dAb, or a single chain binding polypeptide.
68. The method of claim 66 or 67, wherein the anti-IL-33 antibody or antibody fragment comprises:
(a) an immunoglobulin heavy chain amino acid sequence of any one of SEQ ID NO:
1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217, (b) an immunoglobulin heavy chain amino acid sequence that is at least 90% identical to any one of SEQ ID NO: 1, SEQ ID NO:
2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, and SEQ ID NOs: 206-217; or (c) an immunoglobulin heavy chain polypeptide which binds to the same IL-33 epitope as the immunoglobulin heavy chain polypeptide of (a) or (b); and/or
(a) an immunoglobulin light chain amino acid sequence of any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231, (b) an immunoglobulin light chain amino acid sequence that is at least 90% identical to any one of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, and SEQ ID NOs: 218-231; or (c) an
immunoglobulin light chain amino acid sequence which binds to the same IL-33 epitope as the immunoglobulin light chain polypeptide of (a) or (b).
69. The method of claim 66 or 67, wherein the IL-33 inhibitor comprises the complementarity determining regions (CDRs) of the immunoglobulin heavy chain variable region of any of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NOs: 5-50, SEQ ID NOs: 67-140, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NOs: 178-188, or SEQ ID NOs: 206-217; and/or the CDRs of the immunoglobulin light chain variable region of any of SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NOs: 51-66, SEQ ID NOs: 141-175, SEQ ID NOs: 189-205, or SEQ ID NOs: 218-231.
70. The method of any of any of claims 66 or 67, wherein the IL-33 inhibitor comprises the CDRs of the immunoglobulin heavy chain variable region of SEQ ID NO: 136, and the CDRs of the immunoglobulin light chain variable region of SEQ ID NO: 171.
71. The method of any of claim 70, wherein the IL-33 inhibitor comprises the immunoglobulin heavy chain variable region of SEQ ID NO: 136 and the immunoglobulin light chain variable region of SEQ ID NO: 171.
72. The method of any one of claims 51-71, wherein the half-life of the IL-33 inhibitor in the patient is between 30 minutes and 45 days.
73. The method of any one of claims 51-72, wherein the IL-33 inhibitor binds to IL-33 with a KD between about 1 femtomolar (fM) and about 100 micromolar (mM).
74. A pharmaceutical composition comprising an IL-33 inhibitor for the treatment of an allergic reaction according to any of claims 51-73.
75. The method of any of claims 51-74, wherein the method comprises administering to the patient the IL-33 inhibitor not more than once every 30 days.
76. The method of any of claims 51-74, wherein the method comprises administering to the patient the IL-33 inhibitor not more than once every 60 days.
77. The method of any of claims 51-74, wherein the method comprises administering to the patient the IL-33 inhibitor not more than once every 90 days.
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