WO2019169011A1 - Chemotherapeutic oligopeptide mimetics - Google Patents

Chemotherapeutic oligopeptide mimetics Download PDF

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Publication number
WO2019169011A1
WO2019169011A1 PCT/US2019/019868 US2019019868W WO2019169011A1 WO 2019169011 A1 WO2019169011 A1 WO 2019169011A1 US 2019019868 W US2019019868 W US 2019019868W WO 2019169011 A1 WO2019169011 A1 WO 2019169011A1
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substituted
alkyl
amino
group
optionally substituted
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PCT/US2019/019868
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French (fr)
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Gerald F. SWISS
Mansour Bassiri
Richard D. Gless
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Bioxiness Pharmaceuticals, Inc.
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Publication of WO2019169011A1 publication Critical patent/WO2019169011A1/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • A61K38/04Peptides having up to 20 amino acids in a fully defined sequence; Derivatives thereof
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/06Dipeptides
    • C07K5/06008Dipeptides with the first amino acid being neutral
    • C07K5/06078Dipeptides with the first amino acid being neutral and aromatic or cycloaliphatic
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/08Tripeptides
    • C07K5/0802Tripeptides with the first amino acid being neutral
    • C07K5/0804Tripeptides with the first amino acid being neutral and aliphatic
    • C07K5/0806Tripeptides with the first amino acid being neutral and aliphatic the side chain containing 0 or 1 carbon atoms, i.e. Gly, Ala
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/08Tripeptides
    • C07K5/0802Tripeptides with the first amino acid being neutral
    • C07K5/0812Tripeptides with the first amino acid being neutral and aromatic or cycloaliphatic
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/10Tetrapeptides
    • C07K5/1002Tetrapeptides with the first amino acid being neutral
    • C07K5/1005Tetrapeptides with the first amino acid being neutral and aliphatic
    • C07K5/1008Tetrapeptides with the first amino acid being neutral and aliphatic the side chain containing 0 or 1 carbon atoms, i.e. Gly, Ala
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/10Tetrapeptides
    • C07K5/1002Tetrapeptides with the first amino acid being neutral
    • C07K5/1005Tetrapeptides with the first amino acid being neutral and aliphatic
    • C07K5/101Tetrapeptides with the first amino acid being neutral and aliphatic the side chain containing 2 to 4 carbon atoms, e.g. Val, Ile, Leu
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/10Tetrapeptides
    • C07K5/1002Tetrapeptides with the first amino acid being neutral
    • C07K5/1005Tetrapeptides with the first amino acid being neutral and aliphatic
    • C07K5/1013Tetrapeptides with the first amino acid being neutral and aliphatic the side chain containing O or S as heteroatoms, e.g. Cys, Ser
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/10Tetrapeptides
    • C07K5/1002Tetrapeptides with the first amino acid being neutral
    • C07K5/1016Tetrapeptides with the first amino acid being neutral and aromatic or cycloaliphatic
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/10Tetrapeptides
    • C07K5/1021Tetrapeptides with the first amino acid being acidic
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/10Tetrapeptides
    • C07K5/1024Tetrapeptides with the first amino acid being heterocyclic

Definitions

  • This invention is directed to oligopeptides containing one or more amino acid mimetics.
  • the amino acid mimetics employed with said oligopeptides possess
  • chemotherapeutic properties against cancer cells as well as antibacterial properties for those cancer cells that harbor intracellular bacteria.
  • These mimetics are coupled to one or more optionally substituted amino acids preferably containting one or more amino acids selected from the group consisting of optionally substituted phenylglycine, histidine, tryptophan, phenylalanine or tyrosine. Accordingly, disclosed are compounds, compositions and methods for treating a cancer in a mammal as well as prodrugs for such compounds.
  • This invention is based, in part, on the discovery amino acid mimetics, particularly those incorporated into oligopeptides are absorbed preferentially by cancer cells through their amino acid transporters. Once internalized, these oligopeptides are converted to their corresponding single amino acid(s) and the amino acid mimetic by, for example, enzymatic processes. The mimetic then binds with high specificity to the tRNA AA synthesase thereby inhibiting the natural amino acid from being incorporated into the protein being synthesized by the cancer cell. Such inhibition leads to cell death. In addition, any bacterial population found within the cancer cells will likewise absorb such mimetics that will lead to bacterial death.
  • this invention provides for a method for treating cancer in a patient which method comprises administering one or more oligopeptide mimetics to said patient wherein each oligopeptide mimetic has from 1 to 8 optionally substituted amino acids and a C-terminal amino acid mimetic of formula I:
  • R is selected from hydrogen, optionally substituted aryl, or optionally substituted Ci-C 6 alkyl wherein said optional substitution is with from 1 to 3 substituents selected from the group consisting of C 1 -C 4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, C 1 -C 4 alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C 4 thioalkyl, amidino, amido, carboxyl, Ci-C 4 alkoxy, C 3 -C 7 cycloalkyl, oxo, and C 4 -C 4 alkyl-Ci-C 4 alkoxy;
  • R 1 is hydrogen or together with R forms an optionally substituted pyrrolidinyl ring wherein said optional substitution is with from 1 to 3 substituents selected from the group consisting of C 4 -C 4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci- C 4 alkylamino, di(Ci-C 4 alkyl)amino, cyano, halo, C 4 -C 4 haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C thioalkyl, amidino, amido, carboxyl, Ci-C alkoxy, C 3 -C 7 cycloalkyl, oxo, and Ci-C alkyl-Ci-C alkoxy; and
  • (L) indicates an L isomer at that stereochemical center
  • this invention provides for a method for treating cancer in a patient which method comprises administering one or more oligopeptide mimetics to said patient wherein each oligopeptide mimetic has from 1 to 9 optionally substituted amino acids and a C-terminal amino acid mimetic of formula II:
  • Ar is an optionally substituted phenyl, napthyl, imidazolyl or indolyl group
  • t is zero or one
  • said optional substitution on said phenyl, napthyl, imidazolyl, or indolyl groups is from 1 to 3 substituents selected from the group consisting of C 1 -C 4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, C 1 -C 4 alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, C 4 -C 4 thioalkyl, amidino, amido, carboxyl, C 4 -C 4 alkoxy, C 3 - C 7 cycloalkyl, oxo, and C 4 -C 4 alkyl-Ci-C 4 alkoxy; and
  • (L) indicates an L isomer at that stereochemical center
  • this invention provides for a method for treating cancer in a patient which method comprises administering one or more oligopeptide mimetics to said patient wherein each oligopeptide mimetic has from 1 to 9 optionally substituted amino acids and a C-terminal amino acid mimetic of formula III:
  • n and p are independently 0 or 1;
  • X, Y and Z are each independently an L-isomer of an optionally substituted amino acid provided that at least one of X, Y and Z is an optionally substituted aromatic amino acid selected from the group consisting of optionally substituted phenylglycine, optionally substituted phenylalanine, optionally substituted tyrosine, optionally substituted histidine, and optionally substituted tryptophan;
  • said optional substitution on said amino acids is from 1 to 3 substituents selected from the group consisting of C 1 -C 4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci-C 4 alkylamino, di(Ci-C 4 alkyl)amino, cyano, halo, C 4 -C 4 haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci- C thioalkyl, amidino, amido, carboxyl, Ci-C alkoxy, C 3 -C 7 cycloalkyl, oxo, and Ci-C alkyl-Ci-C 4 alkoxy;
  • (L) indicates an L isomer at that stereochemical center
  • this invention provides for a method for treating cancer in a patient which method comprises administering one or more oligopeptide mimetics to said patient wherein each oligopeptide mimetic has from 1 to 9 optionally substituted amino acids and a C-terminal amino acid mimetic of formula IV:
  • R 10 , R 11 , and R 12 are independently an optionally substituted side chain of a non proline amino acid
  • any one of R 10 and R 1 , R 11 and R 2 and/or R 12 and R 3 forms an optionally substituted pyrrolidinyl group
  • Ar is optionally substituted phenyl, optionally substituted histidyl, or optionally substituted indolyl;
  • t is 0 or 1; and y and z are independently 0, 1, 2, 3, 4, 5, 6 or 7 provided that the total of plus z is no greater than 8;
  • said optional substitution on said amino acids is from 1 to 3 substituents selected from the group consisting of C 1 -C 4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci-C 4 alkylamino, di(Ci-C 4 alkyl)amino, cyano, halo, C 4 -C 4 haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci- C thioalkyl, amidino, amido, carboxyl, Ci-C alkoxy, C 3 -C 7 cycloalkyl, oxo, and Ci-C alkyl-Ci-C 4 alkoxy;
  • R is selected from the group consisting of hydrogen, phenyl, (R 20 ) a -phenyl, Ci-C 6 alkyl, and (R 21 ) t ,-(Ci-C 6 alkyl) where R 20 is selected from the group consisting of hydroxyl, Ci-C alkyl, Ci-C alkoxy, halo, thiol, amino, nitro, cyano, and carboxy;
  • R 21 is selected from the group consisting of hydroxyl, C 4 -C 4 alkyl, C 4 -C 4 alkoxy, halo, thiol, amino, amido, nitro, cyano, carboxy, aryl, substituted aryl, heteroaryl, substituted heteroaryl, guanidino, substituted guanidino, and Ci-C alkylthiol; and
  • a and b are integers of from 1 to 3.
  • the cancer cells so treated by the methods of this invention also contain intracellular bacteria that are likewise killed by the compounds described herein.
  • Representative compounds for use in the methods of this invention include the following as provided in Table I below as well as their salts and/or solvates:
  • This invention provides for compounds and methods for killing prokaryotic cells and, in particular, pathogenic bacterial cells.
  • prokaryotic cells and, in particular, pathogenic bacterial cells.
  • references to a certain element such as hydrogen or H is meant to include all isotopes of that element.
  • an R group is defined to include hydrogen or H, it also includes deuterium and tritium.
  • Compounds comprising radioisotopes such as tritium, C 14 , P 32 and S 35 are thus within the scope of this invention. Procedures for inserting such labels into the compounds of this invention will be readily apparent to those skilled in the art based on the disclosure herein.
  • oligomeric refers to peptides having from 1-8 amino acids inclusive of the methionine mimetic of Formula I. In one embodiment, the oligomeric peptides are from 2 to 4 amino acids inclusive of the methionine mimetic of Formula I. In one preferred embodiment, the amino acids in the oligopeptide do not include methionine.
  • amino acid refers to L-amino acids inclusive of all natural amino acids including 4-hydroxyproline, 5-hydroxylysine, and phenyl glycine.
  • Aromatic amino acids include phenylglycine, tryptophan, tyrosine, phenylalanine and the like.
  • substituted amino acids preferably refers to L-amino acids having 1 to 3 substituents on the amino acid side chain which substituents are selected from the group consisting hydroxyl, oxo, nitro, acyl, acylamino, aryl, substituted aryl, amino, C 1 -C 4 alkylamino, di(Ci-C 4 alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substi-tuted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C thioalkyl, sulfonyl, amidino, amido, carboxyl, Ci-C alkoxy, C 3 -C 7 cycloalkyl, and Ci-C alkyl-Ci-C alkoxy.
  • Alkyl refers to monovalent saturated aliphatic hydrocarbyl groups having from 1 to 4 carbon atoms and preferably 1 to 2 carbon atoms. This term includes, by way of example, linear and branched alkyl groups such as methyl (CH 3 -), ethyl (CH 3 CH 2 -), n-propyl (CH 3 CH 2 CH 2 -), isopropyl ((CH 3 ) 2 CH-), «-butyl (CH 3 CH 2 CH 2 CH 2 -), /.so -butyl
  • Substituted alkyl refers to an alkyl group substituted with 1 to 3 substituents selected from the group consisting of hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci-C alkylamino, di(Ci-C alkyl)amino, cyano, halo, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C thioalkyl, amidino, amido, carboxyl, Ci-C 4 alkoxy, oxo, and C 3 -C 7 cycloalkyl.
  • the substituted alkyl is a Ci-C 4 haloalkyl having from 1 to 3 halo groups.
  • Alkoxy refers to the group -O-alkyl wherein alkyl is defined herein. Alkoxy includes, by way of example, methoxy, ethoxy, n-propoxy, /so-propoxy, n-butoxy, t-butoxy, sec-butoxy and the like.
  • Substituted alkoxy refers to the group -O-substituted alkyl wherein substituted alkyl is defined herein.
  • Acyl refers to the groups H-C(O)-, alkyl-C(O)- aryl-C(O)-, substituted aiyl-C(O)-, heteroaiyl-C(O)-, substituted heteroaryl-C(O)-, heterocyclic-C(O)-, and substituted heterocyclic-C(O)-.
  • Acyl includes the“acetyl” group CHsCfO)-.
  • Acylamino refers to the groups -NR 10 C(O)alkyl, -NR 10 C(O)-substituted alkyl; -NR 10 C(O)aryl, -NR 10 C(O)substituted aryl, -NR 10 (CO)heteroaryl,
  • NR 10 C(O)substituted heteroaryl -NR 10 C(O)cycloalkyl, -NR 10 C(O)substituted cycloalkyl, -NR 10 C(O)heterocycloalkyl, and -NR 10 C(O)substituted heterocycloalkyl, where R 10 is hydrogen or alkyl.
  • Amino refers to the group -NH 2 .
  • “Amido” refers to the group -C(0)NR 1:L R 12 where R 11 and R 12 are independently selected from the group consisting of hydrogen, alkyl, substituted alkyl, aryl, substituted aiyl, cycloalkyl, substituted cycloalkyl, heteroaiyl, substituted heteroaiyl, heterocyclic, and substituted heterocyclic and where R 11 and R 12 are optionally joined together with the nitrogen bound thereto to form a heterocyclic or substituted heterocyclic group.
  • Aryl or“Ar” refers to a monovalent aromatic carbocyclic group of from
  • Preferred aryl groups include phenyl and naphthyl.
  • Substituted aiyl refers to aiyl groups which are substituted with 1 to 5, preferably 1 to 3, or more preferably 1 to 2 substituents selected from the group consisting of C 1 -C 4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, amino, C 1 -C 4 alkylamino, di(Ci-C 4 alkyl)amino, cyano, halo, Ci-C 4 haloalkyl, heteroaiyl, substituted heteroaiyl, heterocyclic, substituted heterocyclic, thiol, Ci-C 4 thioalkyl, amidino, amido, carboxyl, Ci-C 4 alkoxy, C 3 -C 7 cycloalkyl, and C 1 -C 4 alkoxy-Ci-C 4 alkyl.
  • Carboxyl or“carboxy” refers to -COOH or salts thereof.
  • Cyano refers to the group -CN.
  • Cycloalkyl refers to cyclic alkyl groups of from 3 to 10 and preferably 3 to 7 carbon atoms having single or multiple cyclic rings including fused, bridged, and spiro ring systems.
  • suitable cycloalkyl groups include, for instance, adamantyl, cyclopropyl, cyclobutyl, cyclopentyl, and cyclooctyl.
  • Halo or“halogen” refers to fluoro, chloro, bromo and iodo.
  • Heteroaiyl refers to a heteroaromatic group of from 1 to 10 carbon atoms and 1 to 4 heteroatoms selected from the group consisting of oxygen, nitrogen and sulfur within the ring.
  • Such heteroaryl groups can have a single ring ( e.g ., pyridinyl or furyl) or multiple condensed rings [e.g., indolizinyl or benzothienyl) wherein the condensed rings may or may not be aromatic and/or contain a heteroatom provided that the point of attachment is through an atom of the aromatic heteroaryl group ln
  • the nitrogen and/or the sulfur ring atom(s) of the heteroaiyl group are optionally oxidized to provide for the N-oxide (N®0), sulfinyl, or sulfonyl moieties.
  • N®0 N-oxide
  • sulfinyl or sulfonyl moieties.
  • Certain non-limiting examples include pyri
  • Substituted heteroaryl refers to heteroaiyl groups that are substituted with from 1 to 5, preferably 1 to 3, or more preferably 1 to 2 substituents selected from the group consisting of the same group of substituents defined for substituted aryl.
  • Heterocycle or“heterocyclic” or“heterocycloalkyl” or“heterocyclyl” refers to a saturated or partially saturated, but not aromatic, group having from 1 to 10 ring carbon atoms and from 1 to 4 ring heteroatoms selected from the group consisting of nitrogen, sulfur, or oxygen.
  • Heterocycle encompasses single ring or multiple condensed rings, including fused bridged and spiro ring systems ln fused ring systems, one or more the rings can be cycloalkyl, aiyl, or heteroaiyl provided that the point of attachment is through a non-aromatic ring ln one embodiment, the nitrogen and/or sulfur atom(s) of the heterocyclic group are optionally oxidized to provide for the N-oxide, sulfinyl, or sulfonyl moieties.
  • Substituted heterocyclic refers to heterocylic groups substituted with 1 to 3 and preferably 1 to 2 substituents selected from the group consisting of hydroxyl, nitro, acyl, acylamino, aiyl, substituted aryl, amino, C1-C4 alkylamino, di(Ci-C 4 alkyl)amino, cyano, halo, heteroaryl, substituted heteroaiyl, thiol, C 1 -C 4 thioalkyl, amidino, amido, carboxyl, C 1 -C 4 alkoxy, oxo, and C 3 -C 7 cycloalkyl.
  • heterocycle and heteroaiyls include, but are not limited to, azetidine, pyrrole, furan, thiophene, imidazole, pyrazole, pyridine, pyrazine, pyrimidine, pyridazine, indolizine, isoindole, indole, dihydroindole, indazole, purine, quinolizine, isoquinoline, quinoline, phthalazine, naphthylpyridine, quinoxaline, quinazoline, cinnoline, pteridine, carbazole, carboline, phenanthridine, acridine, phenanthroline, isothiazole, phenazine, isoxazole, phenoxazine, phenothiazine, imidazolidine, imidazoline, piperidine, piperazine, indoline, phthalimide,
  • Niro refers to the group -NO2.
  • Thiol refers to the group -SH.
  • Alkylthio refers to the group -S-alkyl wherein alkyl is as defined herein.
  • lt is understood that in all substituted groups defined above, polymers arrived at by defining substituents with further substituents to themselves (e.g., substituted aiyl having a substituted aryl group as a substituent which is itself substituted with a substituted aiyl group, etc.) are not intended for inclusion herein ln such cases, the maximum number of such substituents is three. That is to say that each of the above definitions is constrained by a limitation that, for example, substituted aiyl groups are limited to -substituted aiyl-(substituted aryl) -substituted aryl. [0048] lt is understood that the above definitions are not intended to include impermissible substitution patterns (e.g., methyl substituted with 5 fluoro groups).
  • Subject refers to a mammal.
  • the mammal can be a human or non-human animal mammalian organism.
  • Treating” or“treatment” of a disease or disorder in a subject refers to 1) preventing the disease or disorder from occurring in a subject that is predisposed or does not yet display symptoms of the disease or disorder; 2) inhibiting the disease or disorder or arresting its development; or 3) ameliorating or causing regression of the disease or disorder.
  • “Pharmaceutically acceptable” refers to a material that is not biologically or otherwise undesirable, e.g., the material may be incorporated into a pharmaceutical formulation administered to a subject without causing and significant undesirable biological effects or interfering in a deleterious manner with any of the other
  • “Pharmaceutically acceptable carrier” refers to materials such as solvents, stabilizers, pH-modifiers, tonicity modifiers, adjuvants, binders, diluents and other materials well known to the skilled artisan that are suitable for administration to a subject in combination with the compound or compounds of this invention.
  • the specific carrier selected is predicated in part on the intended route of administration such as rectal, oral, intravenous, parenteral, topical, inhalation, and the like. Such is well within purview of the skilled artisan.
  • an“effective amount” refers to that amount that results in a desired pharmacological or physiological effect for a specific condition such as an infection ln some cases, an effective amount is that amount sufficient to treat the symptoms of the disease or condition ln some cases, an effective amount is that amount sufficient to partially or completely cure the subject of the disease or condition ln reference to bacterial infections, an effective amount is preferably that amount that reduces the number of bacterial cells, inhibit bacterial growth, and/or kill existing bacteria ln some cases, an effective amount is that amount that is provided to a subject to prevent a bacterial infection when the subject is at risk of such an infection.
  • the compounds used in the methods of this invention utilize oligopeptide mimetics having from 1 to 8 optionally substituted amino acids and a C-terminal amino acid mimetic of formula I:
  • R is selected from hydrogen, optionally substituted aryl, or optionally substituted Ci-C 6 alkyl wherein said optional substitution is with from 1 to 3 substituents selected from the group consisting of C 1 -C 4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci-C 4 alkylamino, di(Ci-C 4 alkyl)amino, cyano, halo, C 4 -C 4 haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C 4 thioalkyl, amidino, amido, carboxyl, Ci-C alkoxy, C 3 -C 7 cycloalkyl, oxo, and Ci-C alkyl-Ci-C alkoxy;
  • R 1 is hydrogen or together with R forms an optionally substituted pyrrolidinyl ring wherein said optional substitution is with from 1 to 3 substituents selected from the group consisting of C 4 -C 4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci- C alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C thioalkyl, amidino, amido, carboxyl, C 4 -C 4 alkoxy, C 3 -C 7 cycloalkyl, oxo, and Ci-C 4 alkyl-Ci-C 4 alkoxy;
  • the methods of this invention utilize oligopeptide mimetic having from 1 to 8 optionally substituted amino acids and a C-terminal amino acid mimetic of formula II:
  • R is selected from hydrogen, optionally substituted optionally substituted aryl, or Ci-C 6 alkyl optionally substituted with from 1 to 3 substituents selected from the group consisting of C 1 -C 4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci- C 4 alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, C 4 -C 4 thioalkyl, amidino, amido, carboxyl, C 4 -C 4 alkoxy, C 3 -C 7 cycloalkyl, oxo, and C 4 -C 4 alkyl-Ci-C 4 alkoxy;
  • (L) indicates an L isomer at that stereochemical center
  • the methods of this invention utilize an oligopeptide of formula III:
  • R and R 1 are as defined above;
  • n and n are independently 0 or 1 ;
  • X, Y and Z are each independently an L-isomer of an optionally substituted amino acid provided that at least one of R, X, Y and Z is an optionally substituted aromatic amino acid selected from the group consisting of optionally substituted phenylglycine, phenylalanine, optionally substituted histidine, optionally substituted tyrosine, and optionally substituted tryptophan;
  • aromatic amino acids is from 1 to 3 substituents selected from the group consisting of C 4 -C 4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci-C alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted
  • (L) indicates an L isomer at that stereochemical center
  • the methods of this invention utilize a compound of formula IV:
  • R 10 , R 11 , and R 12 are independently an optionally substituted side chain of a non proline amino acid
  • any one of R 10 and R 1 , R 11 and R 2 and/or R 12 and R 3 forms an optionally substituted pyrrolidinyl group
  • Ar is optionally substituted phenyl, optionally substituted histidyl, or optionally substituted indolyl;
  • t is 0 or 1
  • y and z are independently 0, 1, 2, 3, 4, 5, or 6 provided that the total of plus z is no greater than 7
  • said optional substitution on said amino acids is from 1 to 3 substituents selected from the group consisting of C 1 -C 4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, C 1 -C 4 alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci- C 4 thioalkyl, amidino, amido, carboxyl, C1-C4 alkoxy, C 3 -C 7 cycloalkyl, oxo, and C1-C4 alkyl-Ci-C4alkoxy;
  • the amino acids in the oligopeptides described herein do not include methionine as such would be compete with the methionine mimetics described herein with the tRNA Met synthesase.
  • the compounds of this invention can be prepared from readily available starting materials using the following general methods and procedures. It will be appreciated that where typical or preferred process conditions (i.e., reaction temperatures, times, mole ratios of reactants, solvents, pressures, etc.) are given, other process conditions can also be used unless otherwise stated. Optimum reaction conditions may vary with the particular reactants or solvent used, but such conditions can be determined by one skilled in the art by routine optimization procedures.
  • protecting groups may be necessary to prevent certain functional groups from undergoing undesired reactions.
  • Suitable protecting groups for various functional groups as well as suitable conditions for protecting and deprotecting particular functional groups are well known in the art. For example, numerous protecting groups are described in T. W. Greene and P. G. M. Wuts, Protecting Groups in Organic Synthesis , Third Edition, Wiley, New York, 1999, and references cited therein.
  • the compounds of this invention contain one or more chiral centers, such compounds can be prepared or isolated as pure stereoisomers, i.e., as individual enantiomers or d(l) stereomers, or as stereoisomer-enriched mixtures. All such stereoisomers (and enriched mixtures) are included within the scope of this invention, unless otherwise indicated. Pure stereoisomers (or enriched mixtures) may be prepared using, for example, optically active starting materials or stereoselective reagents well-known in the art. Alternatively, racemic mixtures of such compounds can be separated using, for example, chiral column chromatography, chiral resolving agents and the like.
  • the starting materials for the following reactions are generally known compounds or can be prepared by known procedures or obvious modifications thereof.
  • many of the starting materials are available from commercial suppliers such as Sigma-Aldrich (Milwaukee, Wisconsin, USA), Bachem (Torrance, California, USA), Emka- Chemce or others).
  • Others may be prepared by procedures, or obvious modifications thereof, described in standard reference texts such as Fieser and Fieser’s Reagents for Organic Synthesis, Volumes 1-15 (John Wiley, and Sons, 1991), Rodd’s Chemistry of Carbon Compounds, Volumes 1-5, and Supplemental (Elsevier Science Publishers, 1989), Organic Reactions, Volumes 1-40 (John Wiley, and Sons, 1991), March’s Advanced Organic
  • the compounds comprise a methionine mimetic coupled to one to seven optionally substituted amino acids wherein at least one of the amino acids is an aromatic amino acid.
  • the methionine mimetics employed in the oligopeptides of formula 1 are readily prepared from the N-protected methyl ester of methionine as shown below:
  • the N-Boc protected methyl ester of amino acid (1) is treated with hydroxylamine in a solvent mixture of dioxane and water so as to provide for compound (2).
  • That compound can be isolated or purified by conventional conditions such as chromatography, precipitation, crystallization and the like or, alternatively, used in the next step without isolation and/or purification.
  • the Boc protecting group is removed by conventional conditions such as the addition of an acid such as HC1 so as to provide for compound (3).
  • that compound can be isolated or purified by conventional conditions such as chromatography, precipitation, crystallization and the like.
  • protection of functional groups such as amino or carboxyl groups will be necessary.
  • side chain carboxyl group protection such protection should be orthogonal to that of the methyl carboxylate. Suitable orthogonal protecting groups are well known in the art.
  • Compound (3) is then coupled to an amino acid chain of from 1 to 7 amino acids using conventional amino acid coupling conditions well known in the art as shown in the following reaction scheme:
  • m, n, R, X, Y and Z are as defined above and Pg is an amino protecting group such as a Cbz group.
  • Pg is an amino protecting group such as a Cbz group.
  • the compounds and compositions of this invention are useful in killing cancer cells.
  • these compounds and compositions are capable of treating cancer in subjects when administered thereto in an effective amount.
  • Exemplary cancers that are treatable in the claimed methods include breast, prostate, ovarian, cervical, colorectal, renal, pancreatic, non-small cell lung, epithelial, brain, liver, skin (including melanoma), and the like.
  • the compounds and compositions of this invention are also capable of inhibiting bacterial growth and, accordingly, are useful as bactericidal, antibacterial, and anti -infective agents and are particularly useful in treating cancers wherein bacteria populate the intracellular domain of the cancer cells such as in certain phenotypes of pancreatic cancer.
  • the compounds and compositions of this invention are capable of inhibiting intracellular protein synthesis in cancer cells by at least 20%, or by at least 50%, or by at least 75%, or by at least 90%, or by at least 95% or 100% when compared to intracellular protein synthesis in the absence of the compounds and compositions described herein.
  • the compounds and compositions of this invention are capable of intracellular inhibition of methionyl-tRNA synthetase by at least 20%, or by at least 50%, or by at least 75%, or by at least 90%, or by at least 95% or 100% when compared to the enzymatic activity in the absence of the compounds and compositions described herein.
  • the compounds of this invention are effective when administered to a subject in a therapeutically effective amount.
  • such amounts range from about 0.1 pg/kg to about 300 mg/kg when administered orally, intravenously, intra-arterially, intraperitoneally, intramuscularly, subcutaneously, intraocularly, rectally, transdermally, intrapulmonarily, and the like.
  • the amounts so administered more preferably range from about 1 pg/kg to about 40 mg/kg.
  • the compounds and compositions are administered topically such as cream, ointment, lotion, and the like, particularly when treating skin cancer.
  • the amount of compound employed in such topical formulations ranges from 0.1 mg/mL to about 100 mg/mL.
  • the amount of compound administered to the subject depends upon the weight, age, sex, severity of the condition to be treated and other factors well known to the skilled clinician.
  • the compounds of this invention can be administered at least once a day, preferably once or twice a day, and in some cases, three or more times a day.
  • Veegum K (Vanderbilt Co.) 1.0 g
  • a suppository of total weight 2.5 g is prepared by mixing the compound of this invention with Witepsol® H-15 (triglycerides of saturated vegetable fatty acid; Riches- Nelson, Inc., New York), and has the following composition:
  • each range discussed herein can be readily broken down into a lower third, middle third and upper third, etc.
  • all language such as“up to,”“at least,”“greater than,”“less than,” and the like include the number recited and refer to ranges which can be subsequently broken down into subranges as discussed above.
  • a range includes each individual member.

Abstract

Disclosed are amino acid mimetics that possess chemotherapeutic properties against cancer cells. These mimetics are coupled to one or more optionally substituted amino acids provided that at least one of the amino acids is an optionally substituted amino acid selected from the group consisting of phenylglycine, tryptophan, phenylalanine, histidine, and tyrosine.

Description

CHEMOTHERAPEUTIC OLIGOPEPTIDE MIMETICS
Field of the Invention.
[0001] This invention is directed to oligopeptides containing one or more amino acid mimetics. The amino acid mimetics employed with said oligopeptides possess
chemotherapeutic properties against cancer cells as well as antibacterial properties for those cancer cells that harbor intracellular bacteria. These mimetics are coupled to one or more optionally substituted amino acids preferably containting one or more amino acids selected from the group consisting of optionally substituted phenylglycine, histidine, tryptophan, phenylalanine or tyrosine. Accordingly, disclosed are compounds, compositions and methods for treating a cancer in a mammal as well as prodrugs for such compounds.
State of the Art
[0002] Rapidly dividing cancer cells consume disproportionate amounts of the sugar glucose and the amino acid glutamine. However, when the total carbon generated by new cancer cells was evaluated, only about 10 to 15 percent of the carbon found in these cells was associated with glucose whereas only about 10% was associated with glutamine. The remaining carbon found in these cells arose from amino acids absorbed disproportionally by the cancer cells. M1T News, March 7, 2016,
http:/7news.mit.edu/2()16/how-cancer-ceiis-fuei-their-growth-0307
[0003] While the treatment of cancer has evolved from small molecule chemotherapy to immunotherapy, the use of chemotherapy as a frontline defense against cancer remains a critical part of any treatment regimen whether used alone or in combination with immunotherapy.
[0004] Thus, there remains an ongoing need to define new chemotherapeutic agents ln particular, there is an ongoing need to define such agents that are
preferentially absorbed by cancer cells in a target specific manner.
SUMMARY OF THE INVENTION
[0005] This invention is based, in part, on the discovery amino acid mimetics, particularly those incorporated into oligopeptides are absorbed preferentially by cancer cells through their amino acid transporters. Once internalized, these oligopeptides are converted to their corresponding single amino acid(s) and the amino acid mimetic by, for example, enzymatic processes. The mimetic then binds with high specificity to the tRNAAA synthesase thereby inhibiting the natural amino acid from being incorporated into the protein being synthesized by the cancer cell. Such inhibition leads to cell death. In addition, any bacterial population found within the cancer cells will likewise absorb such mimetics that will lead to bacterial death.
[0006] In one of its method aspects, this invention provides for a method for treating cancer in a patient which method comprises administering one or more oligopeptide mimetics to said patient wherein each oligopeptide mimetic has from 1 to 8 optionally substituted amino acids and a C-terminal amino acid mimetic of formula I:
Figure imgf000003_0001
I
where:
R is selected from hydrogen, optionally substituted aryl, or optionally substituted Ci-C6 alkyl wherein said optional substitution is with from 1 to 3 substituents selected from the group consisting of C1-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, C1-C4 alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C4 thioalkyl, amidino, amido, carboxyl, Ci-C4 alkoxy, C3-C7 cycloalkyl, oxo, and C4-C4 alkyl-Ci-C4 alkoxy;
R1 is hydrogen or together with R forms an optionally substituted pyrrolidinyl ring wherein said optional substitution is with from 1 to 3 substituents selected from the group consisting of C4-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci- C4 alkylamino, di(Ci-C4 alkyl)amino, cyano, halo, C4-C4 haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C thioalkyl, amidino, amido, carboxyl, Ci-C alkoxy, C3-C7 cycloalkyl, oxo, and Ci-C alkyl-Ci-C alkoxy; and
(L) indicates an L isomer at that stereochemical center;
including pharmaceutically acceptable salts and/or solvates thereof. [0007] In one embodiment, this invention provides for a method for treating cancer in a patient which method comprises administering one or more oligopeptide mimetics to said patient wherein each oligopeptide mimetic has from 1 to 9 optionally substituted amino acids and a C-terminal amino acid mimetic of formula II:
Figure imgf000004_0001
II where:
Ar is an optionally substituted phenyl, napthyl, imidazolyl or indolyl group;
t is zero or one;
wherein said optional substitution on said phenyl, napthyl, imidazolyl, or indolyl groups is from 1 to 3 substituents selected from the group consisting of C1-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, C1-C4 alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, C4-C4 thioalkyl, amidino, amido, carboxyl, C4-C4 alkoxy, C3- C7 cycloalkyl, oxo, and C4-C4 alkyl-Ci-C4 alkoxy; and
(L) indicates an L isomer at that stereochemical center;
including pharmaceutically acceptable salts and/or solvates thereof.
[0008] In one embodiment, this invention provides for a method for treating cancer in a patient which method comprises administering one or more oligopeptide mimetics to said patient wherein each oligopeptide mimetic has from 1 to 9 optionally substituted amino acids and a C-terminal amino acid mimetic of formula III:
Figure imgf000004_0002
III
m, n and p are independently 0 or 1;
X, Y and Z are each independently an L-isomer of an optionally substituted amino acid provided that at least one of X, Y and Z is an optionally substituted aromatic amino acid selected from the group consisting of optionally substituted phenylglycine, optionally substituted phenylalanine, optionally substituted tyrosine, optionally substituted histidine, and optionally substituted tryptophan;
wherein said optional substitution on said amino acids is from 1 to 3 substituents selected from the group consisting of C1-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci-C4 alkylamino, di(Ci-C4 alkyl)amino, cyano, halo, C4-C4 haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci- C thioalkyl, amidino, amido, carboxyl, Ci-C alkoxy, C3-C7 cycloalkyl, oxo, and Ci-C alkyl-Ci-C4alkoxy;
(L) indicates an L isomer at that stereochemical center;
including pharmaceutically acceptable salts and/or solvates thereof.
[0009] In one embodiment, this invention provides for a method for treating cancer in a patient which method comprises administering one or more oligopeptide mimetics to said patient wherein each oligopeptide mimetic has from 1 to 9 optionally substituted amino acids and a C-terminal amino acid mimetic of formula IV:
Figure imgf000005_0001
wherein:
R10, R11, and R12 are independently an optionally substituted side chain of a non proline amino acid;
alternatively any one of R10 and R1, R11 and R2 and/or R12 and R3 forms an optionally substituted pyrrolidinyl group;
Ar is optionally substituted phenyl, optionally substituted histidyl, or optionally substituted indolyl;
t is 0 or 1; and y and z are independently 0, 1, 2, 3, 4, 5, 6 or 7 provided that the total of plus z is no greater than 8;
wherein said optional substitution on said amino acids is from 1 to 3 substituents selected from the group consisting of C1-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci-C4 alkylamino, di(Ci-C4 alkyl)amino, cyano, halo, C4-C4 haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci- C thioalkyl, amidino, amido, carboxyl, Ci-C alkoxy, C3-C7 cycloalkyl, oxo, and Ci-C alkyl-Ci-C4alkoxy;
including pharmaceutically acceptable salts and/or solvates thereof.
[0010] In one embodiment, R is selected from the group consisting of hydrogen, phenyl, (R20)a-phenyl, Ci-C6 alkyl, and (R21)t,-(Ci-C6 alkyl) where R20 is selected from the group consisting of hydroxyl, Ci-C alkyl, Ci-C alkoxy, halo, thiol, amino, nitro, cyano, and carboxy;
R21 is selected from the group consisting of hydroxyl, C4-C4 alkyl, C4-C4 alkoxy, halo, thiol, amino, amido, nitro, cyano, carboxy, aryl, substituted aryl, heteroaryl, substituted heteroaryl, guanidino, substituted guanidino, and Ci-C alkylthiol; and
a and b are integers of from 1 to 3.
[0011] In one embodiment, the cancer cells so treated by the methods of this invention also contain intracellular bacteria that are likewise killed by the compounds described herein.
[0012] Representative compounds for use in the methods of this invention include the following as provided in Table I below as well as their salts and/or solvates:
Figure imgf000006_0001
II
Figure imgf000006_0002
Figure imgf000007_0001
DETAILED DESCRIPTION OF THE INVENTION
[0013] This invention provides for compounds and methods for killing prokaryotic cells and, in particular, pathogenic bacterial cells. However, prior to addressing this invention in more detail, the following terms will be defined.
1. Definitions
[0014] As used herein, the following definitions shall apply unless otherwise indicated. Further, if any term or symbol used herein is not defined as set forth below, it shall have its ordinary meaning in the art. [0015] As used herein and in the appended claims, singular articles such as“a” and
“an” and“the” and similar referents in the context of describing the elements (especially in the context of the following claims) are to be construed to cover both the singular and the plural, unless otherwise indicated herein or clearly contradicted by context. Recitation of ranges of values herein are merely intended to serve as a shorthand method of referring individually to each separate value falling within the range, unless otherwise indicated herein, and each separate value is incorporated into the specification as if it were individually recited herein. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language ( e.g .,“such as”) provided herein, is intended merely to better illuminate the embodiments and does not pose a limitation on the scope of the claims unless otherwise stated. No language in the specification should be construed as indicating any non-claimed element as essential.
[0016] As used herein,“about” will be understood by persons of ordinary skill in the art and will vary to some extent depending upon the context in which it is used. If there are uses of the term which are not clear to persons of ordinary skill in the art, given the context in which it is used,“about” will mean up to plus or minus 10% of the particular term.
[0017] Generally, reference to a certain element such as hydrogen or H is meant to include all isotopes of that element. For example, if an R group is defined to include hydrogen or H, it also includes deuterium and tritium. Compounds comprising radioisotopes such as tritium, C14, P32 and S35 are thus within the scope of this invention. Procedures for inserting such labels into the compounds of this invention will be readily apparent to those skilled in the art based on the disclosure herein.
[0018] The term“oligomeric” refers to peptides having from 1-8 amino acids inclusive of the methionine mimetic of Formula I. In one embodiment, the oligomeric peptides are from 2 to 4 amino acids inclusive of the methionine mimetic of Formula I. In one preferred embodiment, the amino acids in the oligopeptide do not include methionine.
[0019] The term“amino acid” refers to L-amino acids inclusive of all natural amino acids including 4-hydroxyproline, 5-hydroxylysine, and phenyl glycine. Aromatic amino acids include phenylglycine, tryptophan, tyrosine, phenylalanine and the like. [0020] The term“substituted amino acids” preferably refers to L-amino acids having 1 to 3 substituents on the amino acid side chain which substituents are selected from the group consisting hydroxyl, oxo, nitro, acyl, acylamino, aryl, substituted aryl, amino, C1-C4 alkylamino, di(Ci-C4 alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substi-tuted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C thioalkyl, sulfonyl, amidino, amido, carboxyl, Ci-C alkoxy, C3-C7 cycloalkyl, and Ci-C alkyl-Ci-C alkoxy.
[0021] “Alkyl” refers to monovalent saturated aliphatic hydrocarbyl groups having from 1 to 4 carbon atoms and preferably 1 to 2 carbon atoms. This term includes, by way of example, linear and branched alkyl groups such as methyl (CH3-), ethyl (CH3CH2-), n-propyl (CH3CH2CH2-), isopropyl ((CH3)2CH-), «-butyl (CH3CH2CH2CH2-), /.so -butyl
((CH3)2CHCH2-), sec-butyl ((CH3)(CH3CH2)CH-), /-butyl ((CH3)3C.
[0022] Substituted alkyl” refers to an alkyl group substituted with 1 to 3 substituents selected from the group consisting of hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci-C alkylamino, di(Ci-C alkyl)amino, cyano, halo, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C thioalkyl, amidino, amido, carboxyl, Ci-C4 alkoxy, oxo, and C3-C7 cycloalkyl. In one embodiment, the substituted alkyl is a Ci-C4 haloalkyl having from 1 to 3 halo groups.
[0023] “Alkoxy” refers to the group -O-alkyl wherein alkyl is defined herein. Alkoxy includes, by way of example, methoxy, ethoxy, n-propoxy, /so-propoxy, n-butoxy, t-butoxy, sec-butoxy and the like.
[0024] “Substituted alkoxy” refers to the group -O-substituted alkyl wherein substituted alkyl is defined herein.
[0025] “Acyl" refers to the groups H-C(O)-, alkyl-C(O)- aryl-C(O)-, substituted aiyl-C(O)-, heteroaiyl-C(O)-, substituted heteroaryl-C(O)-, heterocyclic-C(O)-, and substituted heterocyclic-C(O)-. Acyl includes the“acetyl” group CHsCfO)-.
[0026] “Acylamino” refers to the groups -NR10C(O)alkyl, -NR10C(O)-substituted alkyl; -NR10C(O)aryl, -NR10C(O)substituted aryl, -NR10(CO)heteroaryl,
NR10C(O)substituted heteroaryl, -NR10C(O)cycloalkyl, -NR10C(O)substituted cycloalkyl, -NR10C(O)heterocycloalkyl, and -NR10C(O)substituted heterocycloalkyl, where R10 is hydrogen or alkyl. [0027] “Amino” refers to the group -NH2.
[0028] “Amido” refers to the group -C(0)NR1:LR12 where R11 and R12 are independently selected from the group consisting of hydrogen, alkyl, substituted alkyl, aryl, substituted aiyl, cycloalkyl, substituted cycloalkyl, heteroaiyl, substituted heteroaiyl, heterocyclic, and substituted heterocyclic and where R11 and R12 are optionally joined together with the nitrogen bound thereto to form a heterocyclic or substituted heterocyclic group.
[0029] “Amidino” refers to the group -C(=NR13)NRnR12 where R11, R12, and R13 are independently selected from the group consisting of hydrogen, alkyl, substituted alkyl, aryl, substituted aiyl, cycloalkyl, substituted cycloalkyl, heteroaiyl, substituted heteroaiyl, heterocyclic, and substituted heterocyclic and where R11 and R12 are optionally joined together with the nitrogen bound thereto to form a heterocyclic or substituted heterocyclic group ln one embodiment, the amidino group is -C(=NH)NH2.
[0030] “Aryl" or“Ar” refers to a monovalent aromatic carbocyclic group of from
6 to 14 carbon atoms having a single ring ( e.g ., phenyl) or multiple condensed rings ( e.g ., naphthyl or anthiyl) which condensed rings may or may not be aromatic [e.g.,
2-benzoxazolinone, 2H-l,4-benzoxazin-3(4H)-one-7-yl, and the like) provided that the point of attachment is at an aromatic carbon atom. Preferred aryl groups include phenyl and naphthyl.
[0031] “Substituted aiyl” refers to aiyl groups which are substituted with 1 to 5, preferably 1 to 3, or more preferably 1 to 2 substituents selected from the group consisting of C1-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, amino, C1-C4 alkylamino, di(Ci-C4 alkyl)amino, cyano, halo, Ci-C4 haloalkyl, heteroaiyl, substituted heteroaiyl, heterocyclic, substituted heterocyclic, thiol, Ci-C4 thioalkyl, amidino, amido, carboxyl, Ci-C4 alkoxy, C3-C7 cycloalkyl, and C1-C4 alkoxy-Ci-C4alkyl.
[0032] “Carboxyl” or“carboxy” refers to -COOH or salts thereof.
[0033] “Cyano” refers to the group -CN.
[0034] “Cycloalkyl” refers to cyclic alkyl groups of from 3 to 10 and preferably 3 to 7 carbon atoms having single or multiple cyclic rings including fused, bridged, and spiro ring systems. Examples of suitable cycloalkyl groups include, for instance, adamantyl, cyclopropyl, cyclobutyl, cyclopentyl, and cyclooctyl.
[0035] “Halo” or“halogen” refers to fluoro, chloro, bromo and iodo.
[0036] “Hydroxy” or“hydroxyl” refers to the group -OH.
[0037] “Heteroaiyl” refers to a heteroaromatic group of from 1 to 10 carbon atoms and 1 to 4 heteroatoms selected from the group consisting of oxygen, nitrogen and sulfur within the ring. Such heteroaryl groups can have a single ring ( e.g ., pyridinyl or furyl) or multiple condensed rings [e.g., indolizinyl or benzothienyl) wherein the condensed rings may or may not be aromatic and/or contain a heteroatom provided that the point of attachment is through an atom of the aromatic heteroaryl group ln one embodiment, the nitrogen and/or the sulfur ring atom(s) of the heteroaiyl group are optionally oxidized to provide for the N-oxide (N®0), sulfinyl, or sulfonyl moieties. Certain non-limiting examples include pyridinyl, pyrrolyl, indolyl, thiophenyl, oxazolyl, thizolyl, and furanyl.
[0038] “Substituted heteroaryl” refers to heteroaiyl groups that are substituted with from 1 to 5, preferably 1 to 3, or more preferably 1 to 2 substituents selected from the group consisting of the same group of substituents defined for substituted aryl.
[0039] “Heterocycle” or“heterocyclic” or“heterocycloalkyl” or“heterocyclyl” refers to a saturated or partially saturated, but not aromatic, group having from 1 to 10 ring carbon atoms and from 1 to 4 ring heteroatoms selected from the group consisting of nitrogen, sulfur, or oxygen. Heterocycle encompasses single ring or multiple condensed rings, including fused bridged and spiro ring systems ln fused ring systems, one or more the rings can be cycloalkyl, aiyl, or heteroaiyl provided that the point of attachment is through a non-aromatic ring ln one embodiment, the nitrogen and/or sulfur atom(s) of the heterocyclic group are optionally oxidized to provide for the N-oxide, sulfinyl, or sulfonyl moieties.
[0040] “Substituted heterocyclic” refers to heterocylic groups substituted with 1 to 3 and preferably 1 to 2 substituents selected from the group consisting of hydroxyl, nitro, acyl, acylamino, aiyl, substituted aryl, amino, C1-C4 alkylamino, di(Ci-C4 alkyl)amino, cyano, halo, heteroaryl, substituted heteroaiyl, thiol, C1-C4 thioalkyl, amidino, amido, carboxyl, C1-C4 alkoxy, oxo, and C3-C7 cycloalkyl.
[0041] Examples of heterocycle and heteroaiyls include, but are not limited to, azetidine, pyrrole, furan, thiophene, imidazole, pyrazole, pyridine, pyrazine, pyrimidine, pyridazine, indolizine, isoindole, indole, dihydroindole, indazole, purine, quinolizine, isoquinoline, quinoline, phthalazine, naphthylpyridine, quinoxaline, quinazoline, cinnoline, pteridine, carbazole, carboline, phenanthridine, acridine, phenanthroline, isothiazole, phenazine, isoxazole, phenoxazine, phenothiazine, imidazolidine, imidazoline, piperidine, piperazine, indoline, phthalimide,
1,2,3,4-tetrahydroisoquinoline, 4,5,6,7-tetrahydrobenzo[b]thiophene, thiazole, thiazolidine, thiophene, benzo[b]thiophene, morpholinyl, thiomorpholinyl (also referred to as thiamorpholinyl), 1,1-dioxothiomorpholinyl, piperidinyl, pyrrolidine, and tetrahydrofuranyl.
[0042] “Nitro” refers to the group -NO2.
[0043] “Oxo” refers to the atom (=0).
[0044] “Thiol” refers to the group -SH.
[0045] “Alkylthio" refers to the group -S-alkyl wherein alkyl is as defined herein.
[0046] Unless indicated otherwise, the nomenclature of substituents that are not explicitly defined herein are arrived at by naming the terminal portion of the
functionality followed by the adjacent functionality toward the point of attachment.
[0047] lt is understood that in all substituted groups defined above, polymers arrived at by defining substituents with further substituents to themselves (e.g., substituted aiyl having a substituted aryl group as a substituent which is itself substituted with a substituted aiyl group, etc.) are not intended for inclusion herein ln such cases, the maximum number of such substituents is three. That is to say that each of the above definitions is constrained by a limitation that, for example, substituted aiyl groups are limited to -substituted aiyl-(substituted aryl) -substituted aryl. [0048] lt is understood that the above definitions are not intended to include impermissible substitution patterns (e.g., methyl substituted with 5 fluoro groups).
Such impermissible substitution patterns are well known to the skilled artisan.
“Subject” refers to a mammal. The mammal can be a human or non-human animal mammalian organism.
[0049] “Tautomer” refers to alternate forms of a compound that differ in the position of a proton, such as enol-keto and imine-enamine tautomers, or the tautomeric forms of heteroaiyl groups containing a ring atom attached to both a ring -NH- moiety and a ring =N- moiety such as pyrazoles, imidazoles, benzimidazoles, triazoles, and tetrazoles.
[0050] “Treating” or“treatment” of a disease or disorder in a subject refers to 1) preventing the disease or disorder from occurring in a subject that is predisposed or does not yet display symptoms of the disease or disorder; 2) inhibiting the disease or disorder or arresting its development; or 3) ameliorating or causing regression of the disease or disorder.
[0051] “Pharmaceutically acceptable” refers to a material that is not biologically or otherwise undesirable, e.g., the material may be incorporated into a pharmaceutical formulation administered to a subject without causing and significant undesirable biological effects or interfering in a deleterious manner with any of the other
components of the formulation in which it is contained.
[0052] “Pharmaceutically acceptable carrier” refers to materials such as solvents, stabilizers, pH-modifiers, tonicity modifiers, adjuvants, binders, diluents and other materials well known to the skilled artisan that are suitable for administration to a subject in combination with the compound or compounds of this invention. The specific carrier selected is predicated in part on the intended route of administration such as rectal, oral, intravenous, parenteral, topical, inhalation, and the like. Such is well within purview of the skilled artisan.
[0053] An“effective amount” refers to that amount that results in a desired pharmacological or physiological effect for a specific condition such as an infection ln some cases, an effective amount is that amount sufficient to treat the symptoms of the disease or condition ln some cases, an effective amount is that amount sufficient to partially or completely cure the subject of the disease or condition ln reference to bacterial infections, an effective amount is preferably that amount that reduces the number of bacterial cells, inhibit bacterial growth, and/or kill existing bacteria ln some cases, an effective amount is that amount that is provided to a subject to prevent a bacterial infection when the subject is at risk of such an infection.
2. Compounds for use in the methods of the Invention
[0054] The compounds used in the methods of this invention utilize oligopeptide mimetics having from 1 to 8 optionally substituted amino acids and a C-terminal amino acid mimetic of formula I:
Figure imgf000014_0001
where:
R is selected from hydrogen, optionally substituted aryl, or optionally substituted Ci-C6 alkyl wherein said optional substitution is with from 1 to 3 substituents selected from the group consisting of C1-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci-C4 alkylamino, di(Ci-C4 alkyl)amino, cyano, halo, C4-C4 haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C4 thioalkyl, amidino, amido, carboxyl, Ci-C alkoxy, C3-C7 cycloalkyl, oxo, and Ci-C alkyl-Ci-C alkoxy;
R1 is hydrogen or together with R forms an optionally substituted pyrrolidinyl ring wherein said optional substitution is with from 1 to 3 substituents selected from the group consisting of C4-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci- C alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C thioalkyl, amidino, amido, carboxyl, C4-C4 alkoxy, C3-C7 cycloalkyl, oxo, and Ci-C4 alkyl-Ci-C4 alkoxy;
(L) indicates an L isomer at that stereochemical center. [0055] In one embodiment, the methods of this invention utilize oligopeptide mimetic having from 1 to 8 optionally substituted amino acids and a C-terminal amino acid mimetic of formula II:
Figure imgf000015_0001
where:
R is selected from hydrogen, optionally substituted optionally substituted aryl, or Ci-C6 alkyl optionally substituted with from 1 to 3 substituents selected from the group consisting of C1-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci- C4 alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, C4-C4 thioalkyl, amidino, amido, carboxyl, C4-C4 alkoxy, C3-C7 cycloalkyl, oxo, and C4-C4 alkyl-Ci-C4 alkoxy;
(L) indicates an L isomer at that stereochemical center;
including pharmaceutically acceptable salts and/or solvates thereof.
[0056] In one embodiment, the methods of this invention utilize an oligopeptide of formula III:
Figure imgf000015_0002
III where:
R and R1 are as defined above;
m and n are independently 0 or 1 ;
X, Y and Z are each independently an L-isomer of an optionally substituted amino acid provided that at least one of R, X, Y and Z is an optionally substituted aromatic amino acid selected from the group consisting of optionally substituted phenylglycine, phenylalanine, optionally substituted histidine, optionally substituted tyrosine, and optionally substituted tryptophan;
wherein said optional substitution on said aromatic amino acids is from 1 to 3 substituents selected from the group consisting of C4-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci-C alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted
heterocyclic, thiol, C4-C4 thioalkyl, amidino, amido, carboxyl, C4-C4 alkoxy, C3-C7 cycloalkyl, oxo, and C4-C4 alkyl-Ci-C4alkoxy;
(L) indicates an L isomer at that stereochemical center;
including pharmaceutically acceptable salts and/or solvates thereof.
[0057] In one embodiment, the methods of this invention utilize a compound of formula IV:
Figure imgf000016_0001
wherein:
R10, R11, and R12 are independently an optionally substituted side chain of a non proline amino acid;
alternatively any one of R10 and R1, R11 and R2 and/or R12 and R3 forms an optionally substituted pyrrolidinyl group;
Ar is optionally substituted phenyl, optionally substituted histidyl, or optionally substituted indolyl;
t is 0 or 1; and
y and z are independently 0, 1, 2, 3, 4, 5, or 6 provided that the total of plus z is no greater than 7
wherein said optional substitution on said amino acids is from 1 to 3 substituents selected from the group consisting of C1-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, C1-C4 alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci- C4 thioalkyl, amidino, amido, carboxyl, C1-C4 alkoxy, C3-C7 cycloalkyl, oxo, and C1-C4 alkyl-Ci-C4alkoxy;
including pharmaceutically acceptable salts and/or solvates thereof.
[0058] In one preferred embodiment, the amino acids in the oligopeptides described herein do not include methionine as such would be compete with the methionine mimetics described herein with the tRNAMet synthesase.
3. Synthesis
[0059] The compounds of this invention can be prepared from readily available starting materials using the following general methods and procedures. It will be appreciated that where typical or preferred process conditions (i.e., reaction temperatures, times, mole ratios of reactants, solvents, pressures, etc.) are given, other process conditions can also be used unless otherwise stated. Optimum reaction conditions may vary with the particular reactants or solvent used, but such conditions can be determined by one skilled in the art by routine optimization procedures.
[0060] Additionally, as will be apparent to those skilled in the art, conventional protecting groups may be necessary to prevent certain functional groups from undergoing undesired reactions. Suitable protecting groups for various functional groups as well as suitable conditions for protecting and deprotecting particular functional groups are well known in the art. For example, numerous protecting groups are described in T. W. Greene and P. G. M. Wuts, Protecting Groups in Organic Synthesis , Third Edition, Wiley, New York, 1999, and references cited therein.
[0061] If the compounds of this invention contain one or more chiral centers, such compounds can be prepared or isolated as pure stereoisomers, i.e., as individual enantiomers or d(l) stereomers, or as stereoisomer-enriched mixtures. All such stereoisomers (and enriched mixtures) are included within the scope of this invention, unless otherwise indicated. Pure stereoisomers (or enriched mixtures) may be prepared using, for example, optically active starting materials or stereoselective reagents well-known in the art. Alternatively, racemic mixtures of such compounds can be separated using, for example, chiral column chromatography, chiral resolving agents and the like.
[0062] The starting materials for the following reactions are generally known compounds or can be prepared by known procedures or obvious modifications thereof. For example, many of the starting materials are available from commercial suppliers such as Sigma-Aldrich (Milwaukee, Wisconsin, USA), Bachem (Torrance, California, USA), Emka- Chemce or others). Others may be prepared by procedures, or obvious modifications thereof, described in standard reference texts such as Fieser and Fieser’s Reagents for Organic Synthesis, Volumes 1-15 (John Wiley, and Sons, 1991), Rodd’s Chemistry of Carbon Compounds, Volumes 1-5, and Supplemental (Elsevier Science Publishers, 1989), Organic Reactions, Volumes 1-40 (John Wiley, and Sons, 1991), March’s Advanced Organic
Chemistry, (John Wiley, and Sons, 5th Edition, 2001), and Larock’s Comprehensive Organic Transformations (VCH Publishers Inc., 1989).
SYNTHESIS OF REPRESENTATIVE COMPOUNDS OF THE INVENTION
[0063] ln one general embodiment, the compounds comprise a methionine mimetic coupled to one to seven optionally substituted amino acids wherein at least one of the amino acids is an aromatic amino acid. Specifically, the methionine mimetics employed in the oligopeptides of formula 1 are readily prepared from the N-protected methyl ester of methionine as shown below:
Figure imgf000018_0001
Specifically, the N-Boc protected methyl ester of amino acid (1) is treated with hydroxylamine in a solvent mixture of dioxane and water so as to provide for compound (2). That compound can be isolated or purified by conventional conditions such as chromatography, precipitation, crystallization and the like or, alternatively, used in the next step without isolation and/or purification. Subsequently, the Boc protecting group is removed by conventional conditions such as the addition of an acid such as HC1 so as to provide for compound (3). Again, that compound can be isolated or purified by conventional conditions such as chromatography, precipitation, crystallization and the like. Depending upon the side chain of the amino acid used, protection of functional groups such as amino or carboxyl groups will be necessary. As to side chain carboxyl group protection, such protection should be orthogonal to that of the methyl carboxylate. Suitable orthogonal protecting groups are well known in the art.
[0064] Compound (3) is then coupled to an amino acid chain of from 1 to 7 amino acids using conventional amino acid coupling conditions well known in the art as shown in the following reaction scheme:
Figure imgf000019_0001
where m, n, R, X, Y and Z are as defined above and Pg is an amino protecting group such as a Cbz group.. Upon coupling completion, the resulting compound is isolated and purified as described above. Removal of the amino protecting group provides for the desired oligopeptide.
4. Formulations and Methods of Use
[0065] In general, the compounds and compositions of this invention are useful in killing cancer cells. As such, these compounds and compositions are capable of treating cancer in subjects when administered thereto in an effective amount. Exemplary cancers that are treatable in the claimed methods include breast, prostate, ovarian, cervical, colorectal, renal, pancreatic, non-small cell lung, epithelial, brain, liver, skin (including melanoma), and the like.
[0066] In some embodiments, the compounds and compositions of this invention are also capable of inhibiting bacterial growth and, accordingly, are useful as bactericidal, antibacterial, and anti -infective agents and are particularly useful in treating cancers wherein bacteria populate the intracellular domain of the cancer cells such as in certain phenotypes of pancreatic cancer.
[0067] In some embodiments, the compounds and compositions of this invention are capable of inhibiting intracellular protein synthesis in cancer cells by at least 20%, or by at least 50%, or by at least 75%, or by at least 90%, or by at least 95% or 100% when compared to intracellular protein synthesis in the absence of the compounds and compositions described herein.
[0068] In some embodiments, the compounds and compositions of this invention are capable of intracellular inhibition of methionyl-tRNA synthetase by at least 20%, or by at least 50%, or by at least 75%, or by at least 90%, or by at least 95% or 100% when compared to the enzymatic activity in the absence of the compounds and compositions described herein.
[0069] In some embodiments, the compounds of this invention are effective when administered to a subject in a therapeutically effective amount. Preferably such amounts range from about 0.1 pg/kg to about 300 mg/kg when administered orally, intravenously, intra-arterially, intraperitoneally, intramuscularly, subcutaneously, intraocularly, rectally, transdermally, intrapulmonarily, and the like. In some embodiments, the amounts so administered more preferably range from about 1 pg/kg to about 40 mg/kg.
[0070] In some embodiments, the compounds and compositions are administered topically such as cream, ointment, lotion, and the like, particularly when treating skin cancer. When so applied, the amount of compound employed in such topical formulations ranges from 0.1 mg/mL to about 100 mg/mL.
[0071] In all cases, the amount of compound administered to the subject depends upon the weight, age, sex, severity of the condition to be treated and other factors well known to the skilled clinician. In some embodiments, the compounds of this invention can be administered at least once a day, preferably once or twice a day, and in some cases, three or more times a day.
FORMULATION EXAMPLES
[0072] The following are representative pharmaceutical formulations containing a compounds of this invention.
Formulation Example 1— Tablet formulation
[0073] The following ingredients are mixed intimately and pressed into single scored tablets. Quantity per
Ingredient _ tablet, mg
compound of this invention 400
Cornstarch 50
croscarmellose sodium 25
Lactose 120
magnesium stearate_ 5
Formulation Example 2— Capsule formulation
[0074] The following ingredients are mixed intimately and loaded into a hard-shell gelatin capsule.
Quantity per
Ingredient_ capsule, mg compound of this invention 200
lactose, spray-dried 148
magnesium stearate_ 2
Formulation Example 3— Suspension formulation
[0075] The following ingredients are mixed to form a suspension for oral administration.
Ingredient_ Amount compound of this invention 1.0 g
fumaric acid 0.5 g
sodium chloride 2.0 g
methyl paraben 0.15 g
propyl paraben 0.05 g
granulated sugar 25.0 g
sorbitol (70% solution) 13.00 g
Veegum K (Vanderbilt Co.) 1.0 g
Flavoring 0.035 mL
Colorings 0.5 mg
distilled water_ q.s. to 100 mL
Formulation Example 4— Injectable formulation
[0076] The following ingredients are mixed to form an injectable formulation. lngredient Amount compound of this invention 0.2 mg-20 mg
sodium acetate buffer solution, 0.4 M 2.0 mL
HC1 (IN) or NaOH (IN) q.s. to suitable pH water [distilled, sterile]
Figure imgf000022_0001
.s. to 20 mL
Formulation Example 5— Suppository Formulation
[0077] A suppository of total weight 2.5 g is prepared by mixing the compound of this invention with Witepsol® H-15 (triglycerides of saturated vegetable fatty acid; Riches- Nelson, Inc., New York), and has the following composition:
Ingredient_ Amount
Compound of this invention 500 mg
Witepsol® H-15_ Balance
[0078] The following synthetic and biological examples are offered to illustrate this invention and are not to be construed in any way as limiting the scope of this invention. Unless otherwise stated, all temperatures are in degrees Celsius.
5. EXAMPLES
[0079] This invention is further understood by reference to the following examples, which are intended to be purely exemplary of this invention. This invention is not limited in scope by the exemplified embodiments, which are intended as illustrations of single aspects of this invention only. Any methods that are functionally equivalent are within the scope of this invention. Various modifications of this invention in addition to those described herein will become apparent to those skilled in the art from the foregoing description and accompanying figures. Such modifications fall within the scope of the appended claims.
[0080] In the examples below, the following abbreviations have the following meanings. If an abbreviation is not defined, it has its generally accepted meaning. calcd = calculated
g = gram M + H molecular mass plus proton
mL milliliter
mmol millimol
MS Mass Spectroscopy
N Normal
microgram
A. Chemistry
Example 1: Synthesis of (S)-2-amino-N-hydroxy-4-(methylthio)propanamide hydrochloride (HC1 salt. S-enantioner of I-AA)
Figure imgf000023_0001
[0081] To a solution of (S)-methyl 2-amino-propanoate (30.7 mmol) in dioxane
(50 mL) and water (20 mL) at room temperature is added sodium carbonate (5.3 g, 50 mmol) and Boc anhydride (7.96 g, 36.8 mmol). The mixture is stirred overnight at room temperature and then followed by dioxane removal under vacuum. The aqueous layer is extracted with ethyl acetate (3x). The combined organic layers are washed with IN HC1, brine, and dried over anhydrous sodium sulfate, filtered and concentrated to give a residue. That residue is purified on a silica gel column to give (S)-methyl 2-(2-tert- butoxycarbonylamino)propanoate.
[0082] A solution of (S)-methyl-2-(tert-butoxycarbonylamino)propanoate (3.8 mmol) in dioxane (10 mL)and hydroxylamine (50% in water, 10 mL) is stirred at room temperature for 2 days. The solution is diluted with ethyl acetate (200 mL). The organic layer is washed with 1 N HC1, brine, and dried over anhydrous sodium sulfate, filtered and concentrated to give a residue, which is purified on a silica gel column (hexane:ethyl acetate, 1:1 to pure ethyl acetate) to give (S)-tert-butyl 1- (hydroxyamino)- l-oxopropan-2-ylcarbamate. [0083] To solid (S)-tert-butyl l-(hydroxyamino)- l-oxopropan-2-ylcarbamate (1.25 mmol) is added 4 N HC1 in dioxane (2 mL, 8 mmol). The mixture is stirred at room temperature for one hour, and concentrated. The residue is titrated with ether, and dried to provide the title compound.
Example 2: Synthesis of (S)-2-amino-N-hydroxy-4-(methylthio)butanamide hydrochloride (HC1 salt. S-enantioner of I-AA)
Figure imgf000024_0001
[0084] To a solution of (S) -methyl 2-amino-4-(methylthio)butanoate (5 g, 30.7 mmol) in dioxane (50 mL) and water (20 mL) at room temperature was added sodium carbonate (5.3 g, 50 mmol) and Boc anhydride (7.96 g, 36.8 mmol). The mixture was stirred overnight at room temperature followed by dioxane removal under vacuum.
The aqueous layer was extracted with ethyl acetate (3x). The combined organic layers were washed with IN HC1, brine, and dried over anhydrous sodium sulfate, filtered and concentrated to give a residue. That residue was purified on a silica gel column to give (S)-methyl 2-(2-tert-butoxycarbonylamino)-4-(methylthio)butanoate (5.1 g, 63%). MS calcd for (C11H21NO4S + H)+: 264.1; MS found: (M+H)+ = 264.1, 164.1 (minus the t-Boc group).
[0085] A solution of (S)-methyl-2-(tert-butoxycarbonylamino)-4- (methylthio)butanoate (1 g, 3.8 mmol) in dioxane (10 mL)and hydroxylamine (50% in water, 10 mL) was stireed at room temperature for 2 days. The solution was diluted with ethyl acetate (200 mL). The organic layer was washed with 1 N HC1, brine, and dried over anhydrous sodium sulfate, filtered and concentrated to give a residue, which was purified on a silica gel column (hexane:ethyl acetate, 1:1 to pure ethyl acetate) to give (S)-tert-butyl l-(hydroxyamino)-4-(methylthio)-l-oxobutan-2-ylcarbamate (0.33 g, 33%). MS calcd for (C10H20N2O4S + H)+: 265.1; MS found: (M+H)+ =266.2, 166.2 (minus the t-Boc group).
[0086] To solid (S)-tert-butyl l-(hydroxyamino)-4-(methylthio)-l-oxobutan-2- ylcarbamate (0.33 g, 1.25 mmol) was added 4 N HC1 in dioxane (2 mL, 8 mmol). The mixture was stirred at room temperature for one hour, and concentrated. The residue was titrated with ether, and dried to provide the title compound (S)-2-amino-N- hydroxy-4-(methylthio)butanamide hydrochloride (0.18 g, 80%). MS calcd for
(C5H12N2O2S - H)+: 163.1; MS found: (M - H)+ = 163.0; !NMR (MeOH-d) d: 3.82, m, 1H; 2.55, m, 2H; 2.12, s, 3H; 1; 2.1, m, 2H.
Example 3: Synthesis of L-Tryptophan- (S)-2-amino-N-hydroxy-4- (methylthio)butanamide hydrochloride (HC1 salt. S-enantioner)
Figure imgf000025_0001
[0087] To a solution of (S) -methyl 2-amino-4-(methylthio)butanoate and approximately 1.2 equivalents of Boc-tryptophan in dichloromethane at room temperature was added approximately 1.2 equivalents of diisopropylcarbodiimide and approximately 1.2 equivalents of diisopropylethylamine. The mixture was stirred at room temperature until the reaction was substantially complete, wahed with IN HC1, brine and dried over sodium sulfate, filtered and concentrated. The title compound was recovered by silica gel chromatography. !NMR (MeOH-dJ d: 9.72, m, 1H; 7.68, m, 1H; 7.40, m, 1H; 7.12, m, 4 H; 4.44, m, 1H; 4.18, m, 1H; 3.4, m, 1H; .3.18, m, 1H; 2.52, m, 2H; 2.1, s, 3H; 2.0, m, 2H; Example 4: Synthesis of L-phenylalanine- (S)-2-amino-N-hydroxy-4- (methylthio)butanamide hydrochloride (HC1 salt. S-enantioner)
Figure imgf000026_0001
[0088] To a solution of (S) -methyl 2-amino-4-(methylthio)butanoate and approximately 1.2 equivalents of Boc-phenylalanine in dichloromethane at room temperature was added approximately 1.2 equivalents of diisopropylcarbodiimide and approximately 1.2 equivalents of diisopropylethylamine. The mixture was stirred at room temperature until the reaction was substantially complete, washed with IN HC1, brine and dried over sodium sulfate, filtered and concentrated. The title compound was recovered by silica gel chromatography. !NMR (MeOH-dJ d: 7.32, bm, 5H; 4.44, m, 1H;
4.15, m, 1H; 3.25, m, 1H; 3.0, m, 1H; 2.52, m, 2H; 2.1, s, 3H; 2.0, m, 2H;
Example 5: Synthesis of L-tyrosine- (S)-2-amino-N-hydroxy-4- (methylthio)butanamide hydrochloride (HC1 salt. S-enantioner)
Figure imgf000026_0002
[0089] To a solution of (S) -methyl 2-amino-4-(methylthio)butanoate and approximately 1.2 equivalents of Boc-tyrosine in dichloromethane at room temperature was added approximately 1.2 equivalents of diisopropylcarbodiimide and
approximately 1.2 equivalents of diisopropylethylamine. The mixture was stirred at room temperature until the reaction was substantially complete, washed with IN HC1, brine and dried over sodium sulfate, filtered and concentrated. The title compound was recovered by silica gel chromatography. !NMR (MeOH-cQ d: 7.1, d, 2H; 6.89, d, 2H; 4.43, m, 1H; 4.07, m, 1H; 3.19, m, 1H; 2.92, m, 1H; 2.52, m, 2H; 2.1, s, 3H; 2.0, m, 2H;
B. Biology
[0090] While some embodiments have been illustrated and described, a person with ordinary skill in the art, after reading the foregoing specification, can effect changes, substitutions of equivalents and other types of alterations to the compounds of this invention or salts, pharmaceutical compositions, derivatives, prodrugs, metabolites, tautomers or racemic mixtures thereof as set forth herein. Each aspect and
embodiment described above can also have included or incorporated therewith such variations or aspects as disclosed in regard to any or all of the other aspects and embodiments.
[0091] This invention is also not to be limited in terms of the particular aspects described herein, which are intended as single illustrations of individual aspects of this invention. Many modifications and variations of this invention can be made without departing from its spirit and scope, as will be apparent to those skilled in the art.
Functionally equivalent methods within the scope of this invention, in addition to those enumerated herein, will be apparent to those skilled in the art from the foregoing descriptions. Such modifications and variations are intended to fall within the scope of the appended claims lt is to be understood that this invention is not limited to particular methods, reagents, compounds, compositions, labeled compounds or biological systems, which can, of course, vary lt is also to be understood that the terminology used herein is for the purpose of describing particular aspects only, and is not intended to be limiting. Thus, it is intended that the specification be considered as exemplary only with the breadth, scope and spirit of this invention indicated only by the appended claims, definitions therein and any equivalents thereof.
[0092] The embodiments, illustratively described herein, may suitably be practiced in the absence of any element or elements, limitation or limitations, not specifically disclosed herein. Thus, for example, the terms“comprising,”“including,” “containing,” etc. shall be read expansively and without limitation. Additionally, the terms and expressions employed herein have been used as terms of description and not of limitation, and there is no intention in the use of such terms and expressions of excluding any equivalents of the features shown and described or portions thereof, but it is recognized that various modifications are possible within the scope of the claimed technology. Additionally, the phrase“consisting essentially of will be understood to include those elements specifically recited and those additional elements that do not materially affect the basic and novel characteristics of the claimed technology. The phrase“consisting of” excludes any element not specified.
[0093] ln addition, where features or aspects of the disclosure are described in terms of Markush groups, those skilled in the art will recognize that the disclosure is also thereby described in terms of any individual member or subgroup of members of the Markush group. Each of the narrower species and subgeneric groupings falling within the generic disclosure also form part of this invention. This includes the generic description of this invention with a proviso or negative limitation removing any subject matter from the genus, regardless of whether or not the excised material is specifically recited herein.
[0094] As will be understood by one skilled in the art, for any and all purposes, particularly in terms of providing a written description, all ranges disclosed herein also encompass any and all possible subranges and combinations of subranges thereof. Any listed range can be easily recognized as sufficiently describing and enabling the same range being broken down into at least equal halves, thirds, quarters, fifths, tenths, etc.
As a non-limiting example, each range discussed herein can be readily broken down into a lower third, middle third and upper third, etc. As will also be understood by one skilled in the art all language such as“up to,”“at least,”“greater than,”“less than,” and the like, include the number recited and refer to ranges which can be subsequently broken down into subranges as discussed above. Finally, as will be understood by one skilled in the art, a range includes each individual member.
[0095] All publications, patent applications, issued patents, and other documents (for example, journals, articles and/or textbooks) referred to in this specification are herein incorporated by reference as if each individual publication, patent application, issued patent, or other document was specifically and individually indicated to be incorporated by reference in its entirety. Definitions that are contained in text incorporated by reference are excluded to the extent that they contradict definitions in this disclosure.
[0096] Other embodiments are set forth in the following claims, along with the full scope of equivalents to which such claims are entitled.

Claims

WO 2019/169011 Attorney Dockepcx/uS2019/019868O WHAT 1S CLA1MED 1S:
1. A method for treating cancer in a patient which method comprises administering to said patient an oligopeptide mimetic having from 1 to 8 optionally substituted amino acids and a C-terminal amino acid mimetic of formula I:
Figure imgf000030_0001
I
where:
R is selected from hydrogen, optionally substituted aryl, or optionally substituted Ci-C6 alkyl wherein said optional substitution is with from 1 to 3 substituents selected from the group consisting of C1-C4 alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci-C4 alkylamino, di(Ci-C4 alkyl)amino, cyano, halo, C4-C4 haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, Ci-C thioalkyl, amidino, amido, carboxyl, Ci-C alkoxy, C3-C7 cycloalkyl, oxo, and Ci-C alkyl-Ci-C alkoxy;
R1 is hydrogen or together with R forms an optionally substituted pyrrolidinyl ring wherein said optional substitution is with from 1 to 3 substituents selected from the group consisting of Ci-C alkyl, hydroxyl, nitro, acyl, acylamino, aryl, substituted aryl, amino, Ci- C alkylamino, di(Ci-C alkyl)amino, cyano, halo, Ci-C haloalkyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic, thiol, C4-C4 thioalkyl, amidino, amido, carboxyl, C4-C4 alkoxy, C3-C7 cycloalkyl, oxo, and C4-C4 alkylene-Ci-C4 alkoxy.
(L) indicates an L isomer at that stereochemical center;
including pharmaceutically acceptable salts and/or solvates thereof.
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