WO2018112128A1 - Arbidol analogs with improved influenza hemagglutinin potency - Google Patents

Arbidol analogs with improved influenza hemagglutinin potency Download PDF

Info

Publication number
WO2018112128A1
WO2018112128A1 PCT/US2017/066275 US2017066275W WO2018112128A1 WO 2018112128 A1 WO2018112128 A1 WO 2018112128A1 US 2017066275 W US2017066275 W US 2017066275W WO 2018112128 A1 WO2018112128 A1 WO 2018112128A1
Authority
WO
WIPO (PCT)
Prior art keywords
mhz
compound
arbidoi
mmoi
binding
Prior art date
Application number
PCT/US2017/066275
Other languages
French (fr)
Inventor
Ian A. Wilson
Dennis W. WOLAN
Zoë V .F. WRIGHT
Rameshwar U. KADAM
Nicholas C. WU
Original Assignee
The Scripps Research Institute
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by The Scripps Research Institute filed Critical The Scripps Research Institute
Publication of WO2018112128A1 publication Critical patent/WO2018112128A1/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/02Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
    • C12Q1/18Testing for antimicrobial activity of a material
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/569Immunoassay; Biospecific binding assay; Materials therefor for microorganisms, e.g. protozoa, bacteria, viruses
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/395Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum
    • A61K39/42Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum viral
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53Immunoassay; Biospecific binding assay; Materials therefor
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/569Immunoassay; Biospecific binding assay; Materials therefor for microorganisms, e.g. protozoa, bacteria, viruses
    • G01N33/56983Viruses
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/005Assays involving biological materials from specific organisms or of a specific nature from viruses
    • G01N2333/08RNA viruses
    • G01N2333/11Orthomyxoviridae, e.g. influenza virus

Definitions

  • the 2008 pandemic demonstrated the speed with which the infection can spread across the globe and highlighted the eonsiderable limitations on current protection strategies. Whilst vaccines have produced. Some control over the risk of Infection, rapid antigenic drift makes the selection of strains an annual challenge.
  • Arbidoi (Umifenovir) is a broad-spectrum antiviral against a number of viruses, including influenza, Ebola and hepatitis B & C, Despite the lack of a m . echani . sm-of-action against any target virus, Arbidoi is clinically used- in Russia and China and is. currently in phase IV US clinical trials ⁇ clinicaitriais.gov/ct27show/NC-T01651663 ⁇ .
  • One major drawback to the use of Arbidoi is. the large dose required to achieve therapeutic efficiency.
  • Several groups have tried to improve the therapeutic potential by changing the substituents decorating the indole core ( Figure 1).
  • the invention provides, in various embodiments, a method of inhibiting the bioactivily of a virai hemagglutinin (HA) molecule that is displayed on the susface of the influenza virus, comprising contacting the hemagglutinin molecule -with an effective concentration of a virai hemagglutinin (HA) molecule that is displayed on the susface of the influenza virus, comprising contacting the hemagglutinin molecule -with an effective concentration of a virai hemagglutinin (HA) molecule that is displayed on the susface of the influenza virus, comprising contacting the hemagglutinin molecule -with an effective concentration of a virai hemagglutinin (HA) molecule that is displayed on the susface of the influenza virus, comprising contacting the hemagglutinin molecule -with an effective concentration of a virai hemagglutinin (HA) molecule that is displayed on the susface of the influenza virus, comprising contacting the hemagglut
  • the compound of formula (A) can be the compound of formula 11
  • the invention provides a method of treating or preventing an influenza viral infection in a patient, comprising administering to the patient an rmula (A)
  • the compound of formula (A) can be the compound of formula 11
  • FIG. 2 Synthesis of Arbidoi and Analogues. Reagents and Conditions: ⁇ ! acetic anhydride, pyridine (il) Mel, NaH, D F (iii) 8r 2 , CC (iv) thiophehbi, OH, MeOH (v) ' ⁇ , ⁇ , ⁇ ',- ⁇ '- tetramethyidiaminomethane, 1 ,4-dioxane (yi) mine, 1 ,4-dioxane (vfi) R"SH, KOH, MeOH Figure 3: Analogues of Arbidoi
  • Figure 5 Additional Analogues of Arbidoi based on 11. Compound 20 could not be synihesised using the synthetic route described as amine addition to the phenol was observed as well as amine addition to the indole.
  • Crystaiiographic data highlighted the importance of a water molecule in the binding pocket in the .meta position with respect to the thiophenoi group.
  • these analogues were synthesized with and without the presence of the amine- in position 4 on the indole, as well as replacing the amine with a piperazine to see if any further interactions towards the back of the binding pocket could be beneficial.
  • Ka was determined by bioiayerinterferomeiry (BLI) using an Octet Red instrument (ForteBio),
  • Biotinylated HAs purified as- described previously, were, used for these measurements-.
  • HAs at -10-50 ⁇ -sg ml "1 in 1 ⁇ kinetics buffer (1 ⁇ PBS, pH 7.4, 0.01% BSA and 0.002% Tween 20) were loaded onto streptavidin-eoated biosensors and incubated with varying concentrations of small molecule in solution.
  • the ratio- of fcn to k determines the % reported here.
  • Arbidoi I is a broad-spectrum antiviral which can be used, to treat influenza infection from both group 1 and group 2 viruses.
  • each compound was assessed for binding against one HA from group 1 (PR8; A/Puerto Rico/8/1934) and one from group 2 (HK68: A/Hong Kong/1 /68).
  • the mechanism-of-action of Arbidol is to prevent the low pH induced conformational change in HA through stabilization of the pre-fusipn conformation of HA. .
  • Trypsin susceptibilit (IS) assay ' was perf ormed on compound 11 to see if binding to HA woufd have a similar effect to Arbidol.
  • HA is readily converted into a protease-susceptible post-fusion form ⁇ Figure 6, Lanes 1 and 2)
  • Arbidol has been shown to prevent conversion of P ' ' 8 HA at pH 5 and thereby prevent ' trypsin digestion.
  • Compound 11 was found to show the -same effect (Figure 6, Lane 4), which ' was consistent with the result observed for the fusion-inhibiting stem targeting antibody GR911 Fab ( Figure 6, Lane 3).
  • the Trypsin susceptibility assay confirmed that compound 11 acted in the same way as ArbidoL namely by -stabilizing the pre-fusion complex and thus preventing fusion from occurring.
  • TS Trypsin susceptibility assay
  • the only treatments for influenza involv either inhibiting the M2 Ion channel inhibitors or neuraminidase. These mechanisms have been shown to be prone to antigenic drift and indeed resistance to these drugs has already been reported in th clinic.
  • Arbidoi has been shown to have both a novel mechanism of action and a novel binding site but needs to be admiriistered in fairly high doses to achieve therapeutic concentrations in blood plasma.
  • compound 11 shows a much higher binding affinity in the BLi assay, it is possible that the dosage required to reach peak therapeutic efficiency would be far less with respect to the parent compound.
  • Sodium bicarbonate refers to a saturated solution of sodium hydrogen carbonate in water. All water used was either distilled using a Miliipore Mil HQ® water purifier with Q-Gard® 2 column and 0,22 ⁇ filter from mif!ipore or used directly from a bottle of HPLC-grade water. Ail reactions were carried out in closed systems under Argon.
  • NM.R spectra were recorded using a Bruker AVili HD-600, DRX-500, AVI 11-400 and DPX-40G spectrometer (600 MHz, 500 MHz, 400 ' MHz and 400 MHz, respectively) and ail samples were dissolved in deuiera ted chloroform unless otherwise stated.
  • Offline data processing was carried put using the Mest ' reN.ova software " . Chemical shifts (5) are given in; ppm units- relative to tetramethylsilane and coupling constants (J) are measured in Hertz.
  • Proton (1 H) NMR multiplicities are shown as s (singlet), d (doublet), t (triplet), q (quartet), m (mu!tiplet) ' , dd (double doublet), dt ⁇ double triplet), dq (doublet of quartets), dt (doublet of triplets), ti (triplet of triplets), br s (broad singlet), br d (broad doublet).
  • MS refers to low resolution mass spectrometry and H RMS. refers to high resolution mass spectrometry.
  • Eiectrospray ionization (ESI) accurate mass was determined using a ThermoFinnigan LTQ Ion Trap, Flash column chromatography was carried out using silica gel with particle, size ⁇ 60 rn- and reverse phase column .chromatography was carried out using silica gel 60 silanized (53-200 ⁇ ). Thin layer chromatography (TLC) was performed on aluminium backed ' Sigma-Aldrich TLC plates with. FIM fluorescent indicator: Developed plates were air dried and analysed under a. UV light or by staining with the appropriate indicator.
  • NM ⁇ » (40Q MHz, CDCls) 8.34 (1 H, s; H), 7.75 (1H, s, «» ⁇ , 7.21 (1 H , d, J 8.5, He), 6.89 (1 H, d, J 8.5, 7 ⁇ 4.38 (2H, q, J 7.1 , C0 2 CH 2 CH 3 ), 2.71 (3H, e, CiCH 3 ), 2.34 (3H, s, Cq a CH 3 ), 1.43 (3H, t, J 7.1 , CO 2 0H 2 C « 3 ).
  • ArbidoS [EthyH 6 ⁇ bromo-4 ⁇ (dimeihyiamino)metliyl) ⁇ S ⁇ hydr xy ⁇ 1 ⁇ m3 ⁇ 4thyl-2- ⁇ pheny!thio)methyl -1 f/-indole-3-carboxylate] 4: ; Indole 3 (200 mg, 0,476 mmof, 1.0 eq.) and N, N, N' f W ? etramethyldi.amtnometha.ne (1-95 pL, 1.43 mmol, 3,0 eq.) were dissolved in 1 ,4- dsoxane (2 mi.). The reaction was.
  • carboxy ate 8a 3-hydrpxy htophenol. (117 pL, 1 , 15 mmol, 1.0 eq.) was added to a solution of sodium carbonate (367 mg, 3.46 mmoi, 3.0: eq.) and bromo indole 2 (500 mg, 1.15 mmol, 1.0 eq.) in dry ethyl acetate (10 mL). The reaction was heated to TOO °C and stirred for 5 h before cooling, filtering and removing the solvent in vacuo. The compound was purified by column chromatography (40% EtOAc in Hexanes) to produce the title product as a pale yellow solid (240 mg, 44%). HMR: ⁇ « (500 MHz,.
  • carboxyiate 8 Sodium carbonate (106 mg. 1.00 mmoi-, 2.0 eq.) was -added to a stirred solution of meta-hydfoxy indole 8a (240 mg, 0.502 mmoi, 1.0 eq.) in methanol (40 ml) and left to stir for 2h, The solution was then filtered and the solvent removed in vacuo, The product was re- dissolved in ethyl acetate (10 ml..) and washed once with water (40
  • methyM ff-irs o!e-S-carfeoxyiate 12 eia-amino Indole 14 104 mg, 0.238. mmot, 1.0 eq.) and V, ⁇ /, ⁇ , A/' eti3 ⁇ 4rnethyidfami omethane (1.95 ⁇ , 1 ,43 mmoi, 3.0 eq.) were dissolved in 1 ,4- dioxane (1.5 ml). The reaction was heaied to reflux for 3.5 h before removing the solvent in vacuo. The product was purified using preparative TIC to yield a paie yellow solid ⁇ 13 mg, 11 %).
  • Maphthatenyl indole 10 (1 12 mg, 0.238 mmoi, 1.0 eq.) and ⁇ /V ⁇ A/'-tetramethyidraminornethane (195 ⁇ _, 1 .43. mmoi, 3.0 eq.) were dissolved in 1 ,4-dioxane ( 1.5 mL). The reaction was heated, to reflux for 3.5 h .before removing the solvent in vacuo. The product was purified using preparative TIC to yield a pale yellow solid (26 mg, 20%).
  • car boxy ate 18 2-hydroxythiophenol (26.0 ⁇ , 0.256 mmoi, 1.0 eq.) was added to a solution of sodium carbonate (81 ,0 mg, 0.767 mmoi, 3.0 eq.) and promo indole 2 (1 00 mg, 0.256 mmoi, 1 .0 eq.) in ethyl acetate ⁇ 2 mL). The reaction was heated to 50 °C and stirred for 2 h before cooling and removing the solvent in vacuo. The product was then re-dissolved in methanol (2 ml.) and potassium hydroxide (21 ,5 mg, 0.384 mmoi, 1.5 eq , ⁇ was added.
  • carboxylase 17 4 iydroxythiophenol (26.0 pL, 0.256 mmoi, 1 .0 eq.) was added to a solution of .sodium carbonate (81.0 mg, 0,767 mmoi, 3.0 eq.) and bromo indole 2 (100 mg, 0.256 mmoi, 1.0 eq.) in ethyl acetate (2 mL). The reaction was heated to 50 °C. and stirred for 2 h before cooling and removing the solvent . in vacuo. The product was then re-dissolved in methanol ⁇ 2 mL) and potassium hydroxide (21 ,5 mg, 0,384 mmo!, 1,5 eq.) was added.
  • carboxyf ate 18a 3 ⁇ methpxythiophenoi (14.6 ⁇ ' !_, 0.118 mmo!, 1.0 eg.) was added to a solution of sodium carbonate (37.4 mg, 0.353 rrtmoi, 3.Q eq.) and bromo indoles 2 (46.0 mg, 0.118 rornoi, .0 eq.) in dry ethyl acetate (20 ml). The reaction was heated to 50 °C and stirred for 2 h before addition of water. The organic layer was separated, dried (Na ⁇ O ) and concentrated .in vacuo.
  • carboxyla e 18 Sodium carbonate (41.3 mg, 0.390 mmol, 2.0 eq.) was added to a stirred solution of meta-methoxy indole 18a (96,0 mg, 0.195 mmot, 1.0 eq.) in methanol (10 mL) and left to stir for 2h, The solution was then filtered and the solvent removed in vacuo.
  • HMR 3 ⁇ 4 H (500 MHz, MeOD) 7.53 (s, 1 ⁇ , H 7 ), 7.19 - 7,11 (m, 1H, 7.6, .7 Hz, 1H, # «), 6 -86 - 6.78 (m, TH, H ), 6.63 (dt, J - 13.7, 7.6 Hz, 1H, H f5 ), 4.48 (s, 2H, C1 ⁇ 2Sph), 4.34 (s, 2H, CM>NMe 2 ), 4.22 (dq, J * 10.8, 7,1, 6.3 Hz, 2H, C0 2 GH 2 CHs), 3.56 (s, 3H, HCH 3 ), 2.49 (d, J* 11.4 Hz, 6H, CH 2 N(CW 3 ) 2 ), 1.42 ⁇ 1.37 (m, 3H, COzCH ⁇ CHs.
  • methyi-1 f -indoie-S-car oxyiaie 21 Sodium carbonate (17,5 mg, 0165 mmoi, 3.0 eq.) was added to a stirred solution of meta-rnethoxy indole 18 (27.0 mg, 0.055 mmoi, 1.0 eq.) in- ethyl acetate (8 mi.. ⁇ and methanol (1 mL). The solution was left to stir for 3h before filtering and removing the solvent in vacuo.
  • OCTET Bio-Layer fnierferomelry Data and Testing ⁇ was determined by BLJ using an Octet Red instrument (ForteBio). Biofinylated HAs, purified as described previously", were used for these measurements. HAs at -10-60 pg m! "1 m i x kinetics buffer (1 * PBS, pH 7.4, 0.01 % BSA and 0.002% Tween 20). ere loaded onto streptavid in- coated biosensors and incubated with varying concentrations of small molecule in solution.. All binding data were collected -at 30. °C.
  • the experiments comprised five steps: (1 ) baseline acquisition ⁇ 60 s); (2) HA loading onto sensor (1800 s); (3) second baseline acquisition (120 s); (4). association of small molecule for the measurement of fen (180 s); and (5) dissociation of small molecule for the. measurement of feff (18Q s). Baseline and dissociation steps were carried out in. buffer only. The ratio of f w - to fe « determines the % reported here.

Landscapes

  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Urology & Nephrology (AREA)
  • Biomedical Technology (AREA)
  • Hematology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Biotechnology (AREA)
  • Physics & Mathematics (AREA)
  • Analytical Chemistry (AREA)
  • Virology (AREA)
  • Organic Chemistry (AREA)
  • Food Science & Technology (AREA)
  • Cell Biology (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Zoology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Wood Science & Technology (AREA)
  • General Engineering & Computer Science (AREA)
  • Toxicology (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Mycology (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Epidemiology (AREA)
  • Animal Behavior & Ethology (AREA)
  • Public Health (AREA)
  • Veterinary Medicine (AREA)
  • Indole Compounds (AREA)

Abstract

The invention provides a series of analogs of arbidol having enhanced binding activity with respect to influenza hemagglutinin. Accordingly, the invention can provide a method of inhibiting the bioactivity of viral hemagglutinin activity, which is an essential step in the entry of infectious viral particles into host cells. The invention also can provide a method of treatment of influence, comprising administering an effective amount of a compound of formula (A), wherein X is S or O, to a patient afflicted therewith.

Description

Arbidoi Analogs with improved irtfiuenza Hemagglutinin Potency
CROSS-REFERENCE TO RELATED APPLICATION
This application claims the priority of U.S. provisional application serial number 62/435,232, filed Dec 16,. 2016,. the disclosure of which is incorporated by reference, herein in its entirety.
STATEMENT OF GOVERNMENT SUPPORT
This invention was made with government support under 1 R56 Al 1.17675-01 awarded by the National institute of Allergy and infectious Diseases. The government has certain rights in the. invention.
BACKGROUND influenza-is a highly-contagious respiratory viral infection which annually affects -5-20% of the US population leading to nearly 200,000 influenza-related hospitalizations per year and approximately 3,000-49,000 deaths per annum. The 2008 pandemic demonstrated the speed with which the infection can spread across the globe and highlighted the eonsiderable limitations on current protection strategies. Whilst vaccines have produced. some control over the risk of Infection, rapid antigenic drift makes the selection of strains an annual challenge. There, are currently four licensed drugs available for treatment use in the US once, infection occurs; the 2 ion channel inhibitors- Amantadine (Symmetrel®) and Rimantadine (Fiumadine®), and the neuraminidase (NA) inhibitors Osetlamivir (Tamiflu®) and Zanamivir (Reienza¾¾. However, as new strains emerge showing resistance to these drugs, the quest for small molecule therapeutics with novel modes of action becomes more urgent. We herein describe our efforts towards the optimization of the antiviral drug Arbidoi against influenza with the hope of
developing a new drug capable of treating; the infection.
Arbidoi (Umifenovir) is a broad-spectrum antiviral against a number of viruses, including influenza, Ebola and hepatitis B & C, Despite the lack of a m.echani.sm-of-action against any target virus, Arbidoi is clinically used- in Russia and China and is. currently in phase IV US clinical trials {clinicaitriais.gov/ct27show/NC-T01651663}. One major drawback to the use of Arbidoi is. the large dose required to achieve therapeutic efficiency. Several groups have tried to improve the therapeutic potential by changing the substituents decorating the indole core (Figure 1). These have included changes to the nitrogen substltueni, hydroxy grou in position 5, the bromo grou in position 6, and changes to the thiophenol in position 2. However, despite the large number of structure-activity relationship studies carried out to date, none of the compounds have shown a vast improvement in efficacy over their parent compound Arbidoi. We recently published structures of Arbidoi in complex wit the influenza viral fusion protein hemagglutinin (HA) from pandemic 1968: H3N2 and the recent 2013 H7N9 viruses. Our data shows that Arbidoi binds a conserved hydrophobic cavity at the interface of the HA protomers within the upper stem region. The structures demonstrate the. molecular mechanism of antiviral activity, as non-covalent interactions to Arbidoi stabilize the pre-fusicn conformation of HA and prevent the conformational rearrangement required fo membrane fusion and subsequent infection of the host cell Using our structural data, we: observed that. Arbidoi binds tightly to the pocket along the edge of the indole core at positions 1 , 5 and 6 (Figure 1.) and explains why altering groups at these positions had a deleterious effect on the antiviral efficacy of those molecules. Our data aiso. showed that there was additional space within the pocket not fully- optimized for binding to the protein by the amino group in position 4 and the thiophenol group at position 2. Using our structural data, we designed and synihesiseti several molecules to take advantage of 'this, to improve Arbidoi binding. We herein report the first Arbidoi analogue with significantly- improved binding to HA in comparison to the parent compound. We then compared this compound to Arbidoi in a fusion assay and demonstrated both molecules exhibit the same inhibitory effect on membrane fusion, Our study provides new insights into how to manipulate compounds to bind to the influenza virus and presents excising evidence for a possible new influenza therapeutic.
S U !A ,!R
The invention provides, in various embodiments, a method of inhibiting the bioactivily of a virai hemagglutinin (HA) molecule that is displayed on the susface of the influenza virus, comprising contacting the hemagglutinin molecule -with an effective concentration of a
Figure imgf000003_0001
wherein X is S or O. For instance, the compound of formula (A) can be the compound of formula 11
Figure imgf000004_0001
Further, in various em odiments, the invention provides a method of treating or preventing an influenza viral infection in a patient, comprising administering to the patient an rmula (A)
Figure imgf000004_0002
wherein X is S or O. For instance, the compound of formula (A) can be the compound of formula 11
Figure imgf000004_0003
BRIEF DESCRIPTION OF THE FIGURES
Figure 1 : Structure of Arbidoi.
Figure 2: Synthesis of Arbidoi and Analogues. Reagents and Conditions: {!) acetic anhydride, pyridine (il) Mel, NaH, D F (iii) 8r2, CC (iv) thiophehbi, OH, MeOH (v) 'Ν,Ν,Ν',- Ν'- tetramethyidiaminomethane, 1 ,4-dioxane (yi) mine, 1 ,4-dioxane (vfi) R"SH, KOH, MeOH Figure 3: Analogues of Arbidoi
Figure 4: BLi measurements of Arbidoi Analogues
Figure 5: Additional Analogues of Arbidoi based on 11. Compound 20 could not be synihesised using the synthetic route described as amine addition to the phenol was observed as well as amine addition to the indole.
Figure 6: Trypsin susceptibiisiy (TS) assay performed on compound 11 to determine if binding to. HA would have a similar effect to that of Arbidoi DETAILED DESCRIPTION
Synthesis of Arbidoi Analogues:
Our structural data showed that there was space. In .the -binding pocket to accommodate changes to both the thiophenoi group at position 2 and the amine group at position 4. To investigate the SAR, we optimised the original route to synthesize Arbidoi to allow multiple analogues to be made from the common dibrominated intermediate (2) (Figure 2).
Crystaiiographic data highlighted the importance of a water molecule in the binding pocket in the .meta position with respect to the thiophenoi group. To. exploit this potential interaction with HA, we added either an amino or hydroxy -group at the meta position, as well as extending the size of the ring to investigate the effect of increased conjugation.. To investigate the importance of the amino group, these analogues were synthesized with and without the presence of the amine- in position 4 on the indole, as well as replacing the amine with a piperazine to see if any further interactions towards the back of the binding pocket could be beneficial.
The synthesis began with the orthogonal protection and double bromination of the commercially available indole core (1 ) to give 2. Here the synthesis diverged to provide two separate sets of analogues; in route 1, thiophenoi is added to give intermediate 3, followed 'by reaction with /V.^ A/'^W'-t'etramethyidiaminomethane to give Arbidoi (4). Reaction with two piperazine analogues gave compound's 14 and 15. in route 2, various thiols were reacted to give intermediates 8 ~ 10. These were again reacted with N,N,N!..N'~
tetramethyidiamtnometh-an-e to generate analogues 11 - 13 (Figure 3),
Evaluation of Kinetics using Βίο-tayer Interferometry:
To investigate the binding affinity of the compounds to hemagglutinin, Ka was determined by bioiayerinterferomeiry (BLI) using an Octet Red instrument (ForteBio),
Biotinylated HAs, purified as- described previously, were, used for these measurements-. HAs at -10-50 ί-sg ml"1 in 1 χ kinetics buffer (1 χ PBS, pH 7.4, 0.01% BSA and 0.002% Tween 20) were loaded onto streptavidin-eoated biosensors and incubated with varying concentrations of small molecule in solution. The ratio- of fcn to k determines the % reported here.
Arbidoi Is a broad-spectrum antiviral which can be used, to treat influenza infection from both group 1 and group 2 viruses. To test the efficacy of our Arbidoi analogues, each compound was assessed for binding against one HA from group 1 (PR8; A/Puerto Rico/8/1934) and one from group 2 (HK68: A/Hong Kong/1 /68).
As with previous Arbidol-based compounds, many of our analogues did not show an improved affinity for HA over the parent compound; increasing the size of the group at indole position 4 from an amine to a piperaztne did not improve binding to H3 and indeed showed a decreased Kd fo Hl (Figure 4, Entries 9 and 10). Similarly, increasing the size -of the' aromatic ring did not generate improved interactions, nor did the addition of a meta-NHs with respect to the thiol (Figure 4, Entries 4, 5, 7, and 8). Of particular interest was the observation that the binding affinity appeared to improve slightly when the amino group at indole position 4 on
Arbido! was removed, which was not predicted by the structural data (Figure 4, Entries 1 and 2), The most interesting analogue of all was compound 11 (Figure 4, Entry 6) which showed a 100- fold increase in binding with respect to Arbsdoi against HI and a 1000-fold increase in binding again&t H3. it is Interesting to note, that contrary to- compounds 3 and 4, here removal of the amine at position 4 decreases binding, with compound 8 showing only a threefold increase in binding against HI and a fivefold increase in binding against H3 (Figure 4, Entry 3).
Evaluation of the Structure-Based Drug Design Strategy:
Ou crystallography data predicted that b putting a hydroxy group in the meta-po.sillon, it would be possible to increase the binding by displacing a water molecule in the binding pocket. To show that our -approach to structure-based drug design was correct, the next compounds to be synthesised were the.orthor- and: para-hydroxy analogues (Figure 5). It was predicted that these would have a decrease in binding affinity with respect to the meta analogue as the compounds would, not be able to: form the hydrogen bond with Leu-98..
i was also decided. to test the efficacy of the meia-rnethoxy compound, which has shown promise in the treatment of Hepatitis B. To further investigate the effect of the amine substitution in. position 4, analogues, were . synthesised with and without this moiety. Compound 20 could not be synthesised using the designed route as double addition with the amine adding to both the indole and the para-hydroxy ring was observed {Figure 5).
The compounds were again tested in the HA assay using bio-layer interferometry with HI and H3. representing group 1 and group 2 viruses. As predicted by our crystal structure, no binding was observed with eithe the ortho- or para-hydroxy substituted rings. The most interesting result is that replacing the meta-hydroxy group- ith a roethoxy substituent also did not exhibit any binding. Investigation into the Mechanism of Action;
The mechanism-of-action of Arbidol is to prevent the low pH induced conformational change in HA through stabilization of the pre-fusipn conformation of HA.. Trypsin susceptibilit (IS) assay 'was perf ormed on compound 11 to see if binding to HA woufd have a similar effect to Arbidol. At pH 5, HA is readily converted into a protease-susceptible post-fusion form {Figure 6, Lanes 1 and 2), Arbidol has been shown to prevent conversion of P' '8 HA at pH 5 and thereby prevent' trypsin digestion. Compound 11 was found to show the -same effect (Figure 6, Lane 4), which 'was consistent with the result observed for the fusion-inhibiting stem targeting antibody GR911 Fab (Figure 6, Lane 3).
With the assistance of structure- based drug design, we have been able to further probe the structure-activity relationship of the binding site of Arbidol on the influenza HA. fusion protein. Previous work by other groups has shown that many substitutions do not lead to increased binding affinity of analogues with respect to Arbidol. A com arison of the previous structural changes- with our crystal -data showed that ail previous attem ts, at. improvement interfered with key: interactions the molecule makes within the hydrophobic binding pocket, in particular,, substitutions at indole positions 5 and 6 interfered with the binding to Y9 and K310, Our work aimed to take advantage of a structured water molecule bound next to Arbidol within our HA co- complex structures, with the hope that exploiting these key interactions would increase the binding of Arbidol analogues. Replacement of the thiophenoj ri g with a meta- hydroxythiophenol to form 11, generated an impressive 100-fold and 1000-fold increase in affinity against H1 and H3, respectively. To see if the initial prediction based on the structure was correct, subsequently synthesized ortho- and para-substituted miophenois had no detectable binding capacity, as measured by bio-layer interferometry assay. The meta-methoxy compounds 20 and.21, which showed -promise against Hepatitis B were also assessed and lacked ability to. interact with HAs H1 and H3, Our highly improved Arbidol analogue and results clearly show that the replacement of the structured wafer molecule with a hydrogen bond donating moiety that interacts directly with, the HA binding pocket vastly - increases binding affinity and broadly to H I and- H3 HAs. Our optimized Arbidol represents the first compound with such a dramatic increase: in affinity.
The Trypsin susceptibility assay (TS) confirmed that compound 11 acted in the same way as ArbidoL namely by -stabilizing the pre-fusion complex and thus preventing fusion from occurring. Currently, the only treatments for influenza involv either inhibiting the M2 Ion channel inhibitors or neuraminidase. These mechanisms have been shown to be prone to antigenic drift and indeed resistance to these drugs has already been reported in th clinic. Arbidoi has been shown to have both a novel mechanism of action and a novel binding site but needs to be admiriistered in fairly high doses to achieve therapeutic concentrations in blood plasma. As compound 11 shows a much higher binding affinity in the BLi assay, it is possible that the dosage required to reach peak therapeutic efficiency would be far less with respect to the parent compound.
Documents cited
Beige! J & Bray M {2008} Current; and future antiviral therapy of severe seasonal and avian influenza. Antiviral Res, 78{1J:91-102.
De Clereq E {2006} Antiviral agents active against influenza A viruses, Nat Rev. Drug Discov. 5(12}:1015·1025
Pec.heur .Ei, etal. {2016) The Synthetic antiviral drug arbidoi inhibits giobaiiy prevalent pathogenic viruses. J. Virol. 90{δ):308δ~3092.
Blaising J, Polyak SJ, & Pecheur El. (2014) Arbidoi as a broad-spectrum- antiviral: art update. Antiviral Res. 107:84-94.
Branca.to, V., et al. {2013} Design of Inhibitors of influenza virus membrane fusion: Synthesis, structure-activity relationship and in vitro antiviral activity of a novel indole series. Antiviral Res. 99:125-135.
Balzarini, J., et ai: (2014) Structural Analogs of Uniifenovir. 1 « Synthesis and .biological activity of ethyl S-hydrpxy-1 -methyS-2~(/f ar;s-2-phersylcyclopropyl)-1 H~indole-3~carboxyiate. Chemistry of
Heterocyclic Compounds, 50 4):489-495,
Zofova, S. A,, et at (1995) Synthesis and antiviral activity of indole and benzofura sulfides. Pharmaceutical Chemistry Journal, 29(1 ):57-59.
Ghai, H„ et ai. (2006) Synthesis and in vitro anti-hepatitis B virus activities of. some, ethyl 6- bromo-5.-hydroxy-1 H-lndofer3~carboxyiates. Bioorg. Med. Cham., 14:911-917,
Kadsm, R, U. & Wi!son, I. A. (2016) Structural, basis of influenza virus fusion inhibition by the antiviral drug arbidoi, in press. Ekieri, D. C; Kashyap, A. K.; Steel, J.: Rubrum, A,; Bhabha, G.; Khayat, R.; Lee, J, H.: Dillon, . A.; O'Neii, . E.; Faynboym A. .; Horowitz, M,; 'Horowitz, L.;- Ward,. A. B.; Paiese, P.; Webby, R.; Lerrser, R. A.; Bhatt, R. R.; Wilson, I. A., Nature, 489, 526-532 (20/12)
Ekiert DC, et a!. (2009) Antibody recognition of a highly conserved influenza virus epitope. Science 324(5924): 46-251 ,
Dreyfus C, et al. (20 2) Highly conserved protective epitopes on influenza B viruses. Science 337(6100): 1343-1348.
Chai, H.; Zhao, Y.: Zhao, C.; Gong, P., Bioorg. Med. Chem., 14, 911-917 (20D6)
Brancato, V,; Peduto, A.; Wharton, S.; Martin, S.; More, V.; Di ola, A.; SV assa, A.; Perfetto, B.; Dorinarumrrsa, G.; Schlraldi, C; Tufa no, M. A.; de Rosa, .; Fiiosa, R.; Hay, A,., Antiviral Research, 99, 125-135 (2013)
Trofimov, F. A.; Tsyshkova, . G.; Zotova, S. A.; Grinev, A. N., Khirniko-far'matsevticheskii Zhumai, 27, 1 , 70-71 (1993)
Ekiert, D. G.: Kashyap, A. K.; Steel, J„; Rubrum, A.; Bhabha, G.; Khayat R.; Lee, J. H.: Dillon, M. A.; O'Neii. R. £.; Faynboym A, ,; Horowitz.,. .;· Horowitz, L; Ward, A. B.; Patese, P..;. Webby. .; Lefner,. R, A.; Bhatt, R. R.: Wilson, I. A., Nature.. 489, 528-532 (2012)
All patents and publications referred to herein are Incorporated by reference herein to the same extent as if each individual publication was specifically and Individ uaiiy indicated to be incorporated by ref rence in Its entirety.
EXAMPLES
c
Original Synthesis
Figure imgf000010_0001
internfsediate 8 Afbki ;i (soW as the HGi salt)
Intermediate A Com ound 5 Co!Tspoisf¾d 6 fVfatersals and Methods:
General Experimenta : Unless otherwise, indicated, all reagents were obtained from chemical suppliers with no further purification. Sodium bicarbonate refers to a saturated solution of sodium hydrogen carbonate in water. All water used was either distilled using a Miliipore Mil HQ® water purifier with Q-Gard® 2 column and 0,22 μΜ filter from mif!ipore or used directly from a bottle of HPLC-grade water. Ail reactions were carried out in closed systems under Argon. NM.R spectra were recorded using a Bruker AVili HD-600, DRX-500, AVI 11-400 and DPX-40G spectrometer (600 MHz, 500 MHz, 400' MHz and 400 MHz, respectively) and ail samples were dissolved in deuiera ted chloroform unless otherwise stated. Offline data processing was carried put using the Mest'reN.ova software". Chemical shifts (5) are given in; ppm units- relative to tetramethylsilane and coupling constants (J) are measured in Hertz.
Proton (1 H) NMR multiplicities are shown as s (singlet), d (doublet), t (triplet), q (quartet), m (mu!tiplet)', dd (double doublet), dt {double triplet), dq (doublet of quartets), dt (doublet of triplets), ti (triplet of triplets), br s (broad singlet), br d (broad doublet). MS refers to low resolution mass spectrometry and H RMS. refers to high resolution mass spectrometry.
Eiectrospray ionization (ESI) accurate mass was determined using a ThermoFinnigan LTQ Ion Trap, Flash column chromatography was carried out using silica gel with particle, size <60 rn- and reverse phase column .chromatography was carried out using silica gel 60 silanized (53-200 μηι). Thin layer chromatography (TLC) was performed on aluminium backed ' Sigma-Aldrich TLC plates with. FIM fluorescent indicator: Developed plates were air dried and analysed under a. UV light or by staining with the appropriate indicator.
Arfojdel Core Synthesis
Ethyl' 5-aceioxy-2-methyM tf-indo¼»3«earboxylate 1a: Acetic anhydride (25,9 ml, 274 mmc- 20 eq.) was added to a stirred solution of ethyl 5-hydroxy-2-methy|-1 W-lndole-3-carbo ylate 1 (3.00 g, 13.6 mmoi, 1 ,0 eq.) in pyridine (3,32 mL, 41 .1 mmoi, 3.0 eq,) and the reaction heated to reflux. After 1 h, the reaction was allowed to cool back to rt before pouring- the mixture into a solution of aqueous saturated sodium bicarbonate (40 mL). The product .was. extracted with ethyl acetate (3 x 40 ml) and the combined organic layers, were washed with wate (40 mL),
Figure imgf000011_0001
to yield the product as a white solid which was used without. further purification (3.4 g, 96%). NM : δ» (40Q MHz, CDCls) 8.34 (1 H, s; H), 7.75 (1H, s, «»}, 7.21 (1 H , d, J 8.5, He), 6.89 (1 H, d, J 8.5, 7\ 4.38 (2H, q, J 7.1 , C02CH2CH3), 2.71 (3H, e, CiCH3), 2.34 (3H, s, CqaCH3), 1.43 (3H, t, J 7.1 , CO20H23). «c (100 MHz, CQCb) 170.8 (CG2CH3}, 165.8 (COaEt), 1.45.9 (Gs), 145.3 (G2), 132.4 (C8). 127,9 {C3), 116.3 (C6), 113.8 (C<>, 111.2 <G7), 99,8 (C), 59.7 (Ρρ2ΡΗ2ΡΗ3), 21.4 {CiCH3). 14,8 {PQ2PH2CB3}, 14.4 (CO2CH3). Rf: 0,31 (40% ethyl aceiaie in hexane), HR S. (ESI-TGF):
Figure imgf000012_0001
found 262.1074.
Ethyl 5-acetoxy-132-dimethyi-1H-m iofe-3-carboxy at® 1b: Protected indole 1b (1.35 g, 5.17 mmoi, 1 eq.) was dissolved in DMF (15 mL). To this solution, methyl iodide (.0.965 ml, 15.5 mmoi, 3.0 eq.) was added and the resulting mixture was cooled on ice. Sodium hydride {0.186 g, 7.75 mmoi, 1.5 eq.) was added and the reaction was left to stir on ice for 1.5 h. After this time, a small amount of water (5,0 n l.) as added to the reaction and the solvents removed in vacuo. The resultant brown oil was then purified directly by column chromatography (30% ethyl acetate in petrol) to yield the title compound as a pale yel ow solid (1.50 g, 95%}. HWH: ¾ (500 MHz.. CDCI3) 7.79 (s, 1 H, H4)> 7.26 (m, 1 H, H6), 6.96 (ddd, J = .8.8, 2.4, 0.8 Hz, 1H, H7), 4,38 (f, * 7.1 Hz, 2H, COZCWJCHS),. 3.69 (s, 3H, NCH.j), 2.77 {d, J = 1.3 Hz, 3H, ΑΐβΗ3), 2.33 (s, 3H, COaC s), 1.43 (ts J-~ 7.1 Hz, 3H, C02CH2C,¾). 5C (150 MHz, CDCi3) 170.5 (CO2CH3), 166.0 (COaEt), 146.5 (C5)t 146.0 (<½>, 134.5 (C8), 127.2 (C3), 116.2 (Ce), 114.0 {€«}, 109.6 (C7), 104.4 (Cf), 59.6 {COsCHaCHa), 29.9 (NCH3}, 21.3 (C CH3), 14.8 (C02CH2CH3), 12.1 (C02CH3). fi 0.4 {30% ethyi acetate in hex-arse),. HR S (ESt-TGF):
Figure imgf000012_0002
276,1230, found 276.1229.
Ethyi 8-bromo-2»(bromome hyS)-5~hydroxy-1-met.hy ~1 ^Mndole-S-carbox late 2: Bromine (558 p.L, 10.9 mmoi, 3.0 eq.) was. added to a stirred solution of protected indole {1b, 1 ,00 g, 3,63 mmoi, 1.0 eq.) in carbon tetrachloride (100 mL). After refluxing for 16 h, the reaction was cooled and aqueous sodium thlosuiphate (10%. w/v, -100 mL) was added and left to stir for 20 mfrv until the orange colour disappeared. After this time, the organic layer was separated, washed with water (2 x 100 mL), dried (Na2S0 and concentrated in vacuo to yield a pale yellow solid, which was used without further purification {1 ,40 g, 99%). UMR δΗ (400 MHz, PDCb) 7.86 {1 H, s, b l 7,54 (1 H, s, H , 5.05- (2H, s, C½Br), 4.41 {2H, q, J 7.1 , COaCHaCHg), .3.69 (3H, .s, HCH3), 2.39 (3H, s, GO2CW3), 1.45 (3H, t J 7,1 , C02CH2CH-i), 5C {100 MHz, CDCi3)
169.4 (GQ2CH-3), 164.3 (C02Ei), 143.4 (C5), 142.6 (C2), 35.5 (C3), 125.7 {G8}, 116.3 (C4), 1 13.9 (G?), 1 12.0 (C6), 05.6 (C,), 60,3 (Ρ02ΡΒ2ΡΗ3), 30.1 (NPHs), 20.9 (C02CH3), 20.6 (CiCHaBr),
1.4.5 <PQ2pH2PH3), Rf: 0.75 CH2PI2). HRMS (ESI-TOF): ΡΗι· 503ΝΒΓ .([ +H]+) requires 431.944 , found 43 .9441 , Ethyl 6-bromo-5~h droxy~i -methy!-2-({phenylt io)methyi)-1 W ndole»3«carboxy1aie 3: Thiophenoi (99.8 pL, 0.972 rnol, 1 .0 eq.) was added to a solution of potassium hydroxide (164 mg, 2,92 -mmol, 3.0 eq.) in methanol {2 ml) and left to stir at room temperature for 15 min. Afte this time, the solution was cooled on ice and bromo indole 2 (880 nig, 0,972 mmol, 10 eq.) in CH2.CJ2 (5 mL) was added. The reaction was left to stir for 3 h before neutralisation with acetic acid. The solvent was removed in vacuo and columned directly (20% EiOAc in petrol) to yield the title product as a pale yellow solid {362 mg, 86%). UUR δΗ (600 MHz, CDCb) 7.74 (s, 1 H , Hr), 7.43 (s, 1H, H4), 7.36 (dq, J - 5.2, 3.4, 2.4 Hz, 2H, Hw), 7.25 <dd, J ~ 5.2, 1.9 Hz, 3H, H„ and 5.33 (s, 2Ή, SCH2), 4,29 (q, J ~ 7.3 Hz, 2H, COaCHaCHs), 3.60.(d, J * 18,1 Hz, 3H, NGH3), 1 ,38 (t, * 7.3 Hz, 3H, CQjCHzCHs), 6c (150 MHz, CDCb) 165.1 , 147.7, 144,2, 134.1 , 132.9, 129.0, 1.27.9, 127.1 , 1 12.5, 107.5, 106.9, 105.8, 59.9, 31.1 , 30.3, 29.8, 14.7. f: 0.35 {20%". EiOAc in petrol). HRMS (ES1-TOF)-:. C^H^BrNOaS ([M÷H}+) requires 420.0263, found 420.0260.
ArbidoS [EthyH 6~bromo-4^(dimeihyiamino)metliyl)~S~hydr xy~1 ~m¾thyl-2- {{pheny!thio)methyl -1 f/-indole-3-carboxylate] 4:; Indole 3 (200 mg, 0,476 mmof, 1.0 eq.) and N, N, N'f W? etramethyldi.amtnometha.ne (1-95 pL, 1.43 mmol, 3,0 eq.) were dissolved in 1 ,4- dsoxane (2 mi.). The reaction was. heated to reflux for 3,5 h before removing the solvent in vacuo. The reaction was then re-dissolved in ethyl acetate and 1 M HCI.was added to the solution causing the title product to crash .out as a pale yellow solid (1 17 mg, 51%). NMR-: δ» (500 MHz, MeOD) 7.87 (s, I N, H7), 7.39 (dd, J ~ 7.4, 2.2 Hz, 2H, Hw), 7.35 ~ 7.31 (m, 3H, Hu and ««). 4,87 (s, 2H , SCtf*), 4.71 (s, 2H, C^N e?), 4.33 (q, J = 7.1 Hz, 2H, C02C¾CB3), 3,63 (s, 3H, HCHs), 2.97 (s, 6H, U(CH3 )> 1.39 (t, J - 7.1 Hz, 3H, C02C:H2C¾}, Sc (150 MHz, MeOD) 169,7 C02Et), 152.7 (<¾}, 149.0 (C), 13.7.7 (Cf0), 136,4 (<¾), 136.0 (<¾, 132.3 (C».}), 131.3 (CH), 129.3 (C?2), 11.9.8 (C>-),. 11:3.1 (C2), 111.3 (Cs), 108.3 (0,), 64.2. (CO2CH2CH3), 57.4 (CH2NMe2), 45.4 {CH2N(CR3)2); 33.7 (CHjSPh), 32,9 (NCH3), 16.6 (CO2CH2CH3). Rf: 0.25
(EtOAc). HR S .(ESI-TOF): G22H2sBrN203S ({M+H]*) requires 477.0842, found 477,0844.
Figure imgf000013_0001
Ethyl 5»aceiGxy«8 ro o«2^((3«hydr0xyph
carboxy ate 8a: 3-hydrpxy htophenol. (117 pL, 1 , 15 mmol, 1.0 eq.) was added to a solution of sodium carbonate (367 mg, 3.46 mmoi, 3.0: eq.) and bromo indole 2 (500 mg, 1.15 mmol, 1.0 eq.) in dry ethyl acetate (10 mL).. The reaction was heated to TOO °C and stirred for 5 h before cooling, filtering and removing the solvent in vacuo. The compound was purified by column chromatography (40% EtOAc in Hexanes) to produce the title product as a pale yellow solid (240 mg, 44%). HMR: δ« (500 MHz,. CDC ) 7.85 (s, 1H, Hi), 7.56 (s, 1 H, H4), 7.12 (t, J ~ 7.9 Η-ζ,. ΙΗ, ml 6.95 - 6.90. (m, . 1 H, μ 6-78 (s, 1 H, Hw)f 6.75-6.71 (m, 1H,.H,2}, 4.69 (s, 2H, SCH2), 4.30 {q, J == 7.4 Hz, 3H, CO-aCHaCHs), -3.66 (s, 3H. NG?¾}, 2.4Q (s, 3H, CGCHs), 1.38 (t, J = 7.4 Hz, 3H, C02CH2CH3). 6C (150 MHz, CDCta) 169,8, 65,0, 156,1 , 144.6, 143,3, 135.6, 135.1 , 130.1, 126. : 124.8, 119,3, 116.2, 115.3, 113.9, 11 1.1, 105.8, 60.1 , 30.4, 29.9, 21.0, 14.6. Rf OAS (30% EtOAc in Hexane). HRMS' (ESS-TOF): C2iHa0Sr OsS ( +Hf) requires 473,0318, found 478.0317.
Ethyl 6-bromo<"S~h droxy- (^^
carboxyiate 8: Sodium carbonate (106 mg. 1.00 mmoi-, 2.0 eq.) was -added to a stirred solution of meta-hydfoxy indole 8a (240 mg, 0.502 mmoi, 1.0 eq.) in methanol (40 ml) and left to stir for 2h, The solution was then filtered and the solvent removed in vacuo, The product was re- dissolved in ethyl acetate (10 ml..) and washed once with water (40
Figure imgf000014_0001
and concentrating in vacuo to give the title product as a white soltd, which could be used without further purification (160 mg, 67%), NMR-: ©H (600 MHz, MeOD) 7.60 (s, 1H, Hi), 7.58 (s, 1 H, H4), 7.07 (dd, J * 8.2, 7,7 Hz, 1H, H13), 6.83 - 6.81 (m, ίΗ,, Η,*), 6.79 (ddd, J ~ 7.7, 1.8, 0.9, 1 H, H ), 6,7.0 (dd. - 8.2, 1.8, 0.9 Hz, 1 H, ½), 4.70 (s, 2H, SCH2), 4,26 (q, J « 7.1 Hz, 2H,
COaCHzCHs), 3.64 (s, 3H, NCHj), 1.39 (t, J = 7.1 Hz, 3H, COaCHaCHj). δς (150 MHz, MeOD) 166,9, 158.9, 150.6, 145.5, 136.4, 133.6, 131.0,. 130.7, 128.0, 1.24.9, 120.5, 116.0, 1 14.8, 107.9, 104.8, 60.8, 30.5, 30.4, 14.8. f 0.45 (1 %
Figure imgf000014_0002
([M÷H]+) requires 436.0213, found 436.0215.
Ethyl 2»{{{3«amtnophenyi)thio}m8thyl)«6«bromo*.5^^
carboxyiate. 9: 3-aminoihiophenol (54.3 yL,.0.51 mmoi, 1 ,0 eq.) was. added to a solution of potassium hydroxide (86 mg, 1.53 mmoi, 3.0 eq .) in methanol (2 ml) and left to stir at room temperature for 15 min. After this time, the solution was cooled on ice and bromo indole 2 (200 mg, 0,511 mmoi, 1.0 eq.) in CH2CI2 (5 ml) was added- The reaction was left 'to- stir for 3 before neutralisation with acetic-acid. The solvent was removed in vacuo and purified directly fay preparative TLC (1% MeOH in CH2Ci2) to yield the title product as a pale yellow solid (138 mg, 62%), NMR: « (500 MHz, CDCI3) 7.74 (d, J = 1.8 Hz, 1H, Hi), .7.42 (d, J = 1.8 Hz., 1H, H4% 7.03 (t, J =. 8.1 Hz, I K, Hia), 6,75 (d, J ~ 7.7 Hz, 1H, H ), 6.68 (s, 1 H, Hu), 6.55 (d, J = 6.1 Hz, 1 H, Hii), 4,68 (d, J - 1.9 Hz, 2H, SCW2), 4.35™ 4.30 (m, 2H, GOC¾GH3),. 3,60 (d, J = 1.9 Hz, 3H, HCHa), 1.40 (id, J - ? .1 , 1.8 Hz, 3H, 'COCH2CH3>'.-5c (150 MHz, CDCb) 1-66.9, 150.6, 149.6, 146.0, 136.0, 133.5, 1.30.5, 128.1 , 123.1 , 120.2, 117.6, 115.8, 114.8, 07.9, 104.6, 68.1 , 60.8, 30.4, 1 .8. f: 0.85 {1% MeOH in CH2CI2), HRMS (ESI-TOF):
Figure imgf000015_0001
requires 435.0372, found 435.0370,
Ethyl 2~({{3~armnQphenyi}thio}methy }-6^^
carboxy^aie 10: 2-napthaleneihiol (82.0 mg, 0,511 mmot, 1.0 eq.) was added to a solution of potassium hydroxide {86 mg, 1.53 mmol, 3.0 eq.) in methanol (2 mL.) and left to stir at room temperature for 15 m.in. After this time, the solution was cooled on ice and bromo indole .2 (200 mg, 0.51 mmo!, 1.0 eq.) in CH2Ci2 (5 mL}'was added. The reaction was left to stir for 3 h oefore neutralisation with acetic acid. The solvent was removed .in vacuo and purified directly by preparative TLC (1% MeOH in CH2CI2) to yield the title product as a pale yellow solid (118 mg, 50%). N R: δκ (6QQ MHz, DMSO) 9.77 (s, 1 H, 0,% 7.83 (d, J ~ 1.8 Hz, 1H, Ar), 7.81 - 7.79 (m, 1 H, Ar), 7,75 (d, J 8.6 Hz, 1Ή, Ar), 7.72 - 7,70 {m, 1H, Ar), 7,66 (s, 1 H, Hz), 7.46 (s, 1 K, ¾}, 7.45 - 7,40 (m, 2H, Ar), 7.34 (dd, J ~ 8.5, 1.9 Hz, 1H, Ar), 4.82 s, 2H, QH&Ph), 4.04 (q, J » 7.1 Hz, 2H, CC¾C½CH3), 3.63 (s, 3H, NC.%), 1.14 ({, J ~ 7.1 Hz, 3H, CO¾CH2CH3). 5c (150 MHz, DMSO) 164.3, 149.3, 143.4, 133,2, 132.0, 131.7, 131,6, 128.9, 128.4, 128,4, 127.7, 127,2, 126.8, 126,3, 1:26.0, 114.3, 106.5, 1.06.3, 103.3, 59.2, 30.3, 28.1 , 14.3. Rf: 0.75 (1% MeOH in CH2Cf2). HR.MS (ESI-TGP): CasHaBr QsS (fM+Hf) requires 470.0420, found 470.0420.
Ethyl 0-br©mo*4«{(d$methy am
methyl- W-indofe~3~carboxy!3te 11 ; Meta-hydroxy indole 8 (30.0 mg, 0.069 mmoi, 1 ,0 eq,) and N, N,N\ Λ/'-tetramethyidtaminomethane (47.0 μΐ, 0.344 mmol, 5.0 eq.) were dissolved in CHaCia (30 mL). The reaction was heated to reflux for 3.5 h before removing the solvent in vacuo to, yield the iifie product as a pale yellow solid (34 mg. 99%). R; 5H (500 MHz, CDC ) 7.47 (s, 1H, 7), 7.12 (t, J » 7.9 Hz, 1H, H13), 6.90 (d, J = 7,9 Hz, 1 H, Ht4), 6.90 (d, J ~ 7.9 Hz, 1 H, Hi2), 6.66 (s, 1 H, Hip), 4.41 (s, 2H, CH2NMe2), 4.34 (s, 2H, C.H2SPh), 4.15 (q, J * 7.1 Hz, 2H, CO2CH2CH3), 3.60 {s, 3H. NC.W3), 2.55 (s, 6H, CHaN^CH^z),. 1.33 - 1.21 (m, 3H,
C02CH CW3). 6.c (.150 MHz, CDC¾) 165.9, 156.7, 150.9, 142,6, 135,1, 132.2, 131.0, 130,0, 128.9, 124.6, 124.3, 19.3, 115.5, 113.4, 108.6, 106.3, 60.8, 58.7, 44,0, 30.4, 29.9, 14.3, Rf: 0.15 (10% MeOH in CH2CI2). HRMS (ESS-TOF): C22H2sBr 204S ([M+H } requires 493,0791 , found 493.0792,
Ethyl 2~({{3~amm©phenyf)iW^^
methyM ff-irs o!e-S-carfeoxyiate 12: eia-amino Indole 14 104 mg, 0.238. mmot, 1.0 eq.) and V, Α/,ΛΓ, A/' eti¾rnethyidfami omethane (1.95 μΐ, 1 ,43 mmoi, 3.0 eq.) were dissolved in 1 ,4- dioxane (1.5 ml). The reaction was heaied to reflux for 3.5 h before removing the solvent in vacuo. The product was purified using preparative TIC to yield a paie yellow solid {13 mg, 11 %). NMR: δΒ (500 MHz, MeOD.) 7.61 s, 1H, H?), 7,00 (t, J « 7.8 Hz, 1 H, H13), 8,69 (t, J « .2.0 Hz, i.H, Hio), 6.61 ~ 6,66 (m, 2H, H and HM), 4.57 (s, 2H, CWiS'P ), 4.40 (s, 2H, CWzNMez}, 4.24 (q. J - 7.2 Hz, 2H, CQ2CH2CH3), 3.61 (s, 3H, NCH3), 2.55 (s, 6H, CH2N{CH3}2X 1.36 (t, J * 7.1 Hz, 3H, C02GHgCH3}. 5C (150 MHz.. eOD) 167.6, 149.7, 144.5, 136.0, 132.6, 130.6, 129.8, 126.1, 123.0, 120.2, 115.9, 114,8, 112.5, 111.4, 1 10.7, 61.5, 59.8, 43.5, 31.2, 30,5, 14,6. R*: 0.35 (10% MeOH in CH2C!2}. H MS (ESi-TOF): C?2H2eBrN30aS ([M+H]*) requires 492.0951 , found 492.0951.
Ethyl S^romo-4~({d1methyla inQ)m
yifh¾}iTiethyl}-lW-indoie-3--Garbox late 13: Maphthatenyl indole 10 (1 12 mg, 0.238 mmoi, 1.0 eq.) and ^ /V^A/'-tetramethyidraminornethane (195 μί_, 1 .43. mmoi, 3.0 eq.) were dissolved in 1 ,4-dioxane ( 1.5 mL). The reaction was heated, to reflux for 3.5 h .before removing the solvent in vacuo. The product was purified using preparative TIC to yield a pale yellow solid (26 mg, 20%). .NMR: 5H (600 MHz, MeOD) 7.83 ~ 7.60 (m, 1H, Ar), 7.74 (d, J ~ 7.8 Hz, 2H, Ar), 7.68 - 7.65 (m, 1H, Ar), 7.60 (s, 1 H, r), 7.49 -7.43 (m, 2H, Ar), 7,34 (dd. J * 8.6, 1 ,7 Hz, IH. Ar), 4.69 (s, 2H, C½SPh), 4,27 {s, 2H, C½ Me2), 4.04 ~ 3,98 (m, 2H, CQzOHiC z), 3.65 (s, 3H, NCW3), 2,45 (s, 6H, Ο^ ίΟΗ, ), 1.21 - 1.15 (m, 3H, COzCR^Cfk)-. 5c (150 MHz, .MeOD) 167.3, 154.9, 143.8, 135.0, 134.1, 133.2, 132.6, 132.6, 131.3, 129.5, 128.7, 128.5, 127.6, 127.6, 125.9, 1 14.6, 1.12.6, 110.8, 106.6, 61.4, 60,0, 43.5, 31,0, 30.8, 30,6, 14.5. Rf: 0.65 {10% MeOH in CH2C¾), H MS (ESI-TOF): Caj /BrNaOaS ([M+H}+} requires 527.0998» found 527.0996.
Boc piparaxinyl arbidoi fEthyS S-acetoxy»6-bronTO-4-{(4-iefi-butoxycarbonyi)pipera2in-1» yl)methyl}-1-methyl-2-((phenylth^^ 14; Arbidoi 4 (20 mg,
0.0419 mmol, 1.0 eq.) and 1-boc~plperazlne (2 q, 0.126 mrrsol, 3.0 eq. ) were dissolved In 1 ,4- dioxane. (2 mL) and ref!uxed overnight. The solvent was then removed in vacuo and the reaction columned directly to yield the title product as a yellow solid (20 mg, 77%). MMR: 5H (400 MHz, MeOD) 7.55 (s, 1 H, Hi), 7.30 - 7,20 (m, 5H, SPh), 4.54 (s, 2H, CHaSPh), 4,25 - 4.07 (m, 4HS CH2NR2 and CQ2CH2CH3), 3.58 (d( J - 8.2 Hz, 3H, HCH3), 3.47 (br s, 4H, BocN(CH2)2), 2.53 (brs, 4H, BoeN(CH22)2). 1.44 (s, 9B, Boc), 1.30 - 1.26 (m, 3H, CO2CH2CH3). 6C (150 MHz, MeOD) 167.2, 156.2, 151.3, 144.0, 1.35.4, 134.3, 134.1 , 133.6,. 130.1 , 129.9,. 129.0, 128.9, 125,6, 114.8, 114.3, 1 3.8, 108.7, 107.9, 167.1 , 81 ,5, 61 ,5, 60.7, 58.6, 53.0, 30.9, 30.6, 28.6, 14.8, 14.6. Hfi 0.5 (30% EtQAo in petrol). HUMS (ESI-TOF):
Figure imgf000017_0001
{(M + H ) requires 618.1632, found 618.1631.
A!ko y piperazmyl Arbido! [Ethyl 5~ac©t0xy»6»bromQ~4-{{4-(2~hydro
l}met yi)-1- ethyl-2-i(pheF^lths0}^^ 15; Arfaidoi 4 (20 mg,
0,0419 mmoi, 1.0 eq.) and 1-(2-{(trimethyisiiyr)oxy)ethy!)piperazine (25 mg, 0.126 moi, 3.0 eq.) were dissolved in 1 ,4-dioxane (2 mL) and refluxed overnight. The solvent was then removed in vacuo and the reaction columned directly to. yield the title product as a yellow solid (12 mg, 51 %). HMR δΗ (400 MHz, MeOD) 7,56 (s, 1.H, H?), 7.22 - 7.30 (mf SH, SPh), 4.57 (s, 2H, CHzSPh), 4.14 - 4.19 (m, 4H, CH2NR2 and 0Ο2Ο/¾0Η3), 3.68 (t, J ~ 5.9 Hz, 2 ,. CH£>H), 3,60 (s, 3H( NCWs), 2.53 - 2.70 (m, 10H, piperazine ring and - e.HzCH?OH),. 134 - 1.30 (rn, 3H, C02CH2C,¾). «c (150 MHz, eOD) 167.2, 151.7. 143.9, 135.4, 134.2, 1 33.4, 130.1 , 129.0, 125.5, 1 14.1 , 1 13.6, 108,9, 107.0, 61.5, 61.1 , 59.8, 59.1 , 54.3, 52.9, 30.9, 30.5, 14,7. Rf: 0.15 (S% MeOH in CH2CI2),
Figure imgf000017_0002
found 562.1368,
Ethyl 6"^ro 0»5-hydrG y"2«{ (2 iydroxy
car boxy ate 18: 2-hydroxythiophenol (26.0 μΐ, 0.256 mmoi, 1.0 eq.) was added to a solution of sodium carbonate (81 ,0 mg, 0.767 mmoi, 3.0 eq.) and promo indole 2 (1 00 mg, 0.256 mmoi, 1 .0 eq.) in ethyl acetate {2 mL). The reaction was heated to 50 °C and stirred for 2 h before cooling and removing the solvent in vacuo. The product was then re-dissolved in methanol (2 ml.) and potassium hydroxide (21 ,5 mg, 0.384 mmoi, 1.5 eq ,} was added. The reaction was stirred at room temperature for 3 h before direct purification by preparative TLC (2% MeOH in CH2CI2) to yield the title product as. a white solid (20,5 mg, 1.8%), HMR δ» (500 MHz,. MeOD) 7.69 (s, 1 H„ Hr), 7.54 (s, I N, Η4), 7Λ7 {Χ, J - 7.7 Hz, 1 , H12), 7.08 (d, J - 7,7 Hz, 1H, Η»), 6,85 (d, -7.7 Hz, 1H, Mi3), 6.66 (t, J - 7.7 Hz, 1 H, Hi5), 4.58 (s, 2H, SCH?), 4.24 (q, J - 7.1 Hz, 2H,
GQ2CW2CH3), 3.59 {s, 3H, NCH3), . 1.40 {!, J - 7.1 Hz, 3H,. C02CH2C¾). Sc ( 150 MHz, MeOD) 161.3, 146.4, 143.3, 134.8, 132,0, 130.4, 129.4, 123.7, 23,0, 121,8, 12Q.S, 1 14.4, 113.6, 110.0, 102.7, 60.4, 30.0, 29,2, 15.0. Rf: 0.6 (2% MeOH in CHyC ). HUMS (ESI-TOF): CnjHieBrN04S ([M+Hf) requires 436.0213, found 436.0212.
Ethyl 6-bromo-5-hydrpxy-2-(({4-hydr xyphen l)thio}methyi)
carboxylase 17; 4 iydroxythiophenol (26.0 pL, 0.256 mmoi, 1 .0 eq.) was added to a solution of .sodium carbonate (81.0 mg, 0,767 mmoi, 3.0 eq.) and bromo indole 2 (100 mg, 0.256 mmoi, 1.0 eq.) in ethyl acetate (2 mL). The reaction was heated to 50 °C. and stirred for 2 h before cooling and removing the solvent . in vacuo. The product was then re-dissolved in methanol {2 mL) and potassium hydroxide (21 ,5 mg, 0,384 mmo!, 1,5 eq.) was added. The reaction was stirred at room temperature for 3 h before direct purification by preparative TLC (2% MeOH in CH2CI2) to yield the title product as a white solid (2.5 mg, 2%). R: δΗ (600 MHz, DMSO) 7.65 (s, i H, Hi), 7,49 (s, 1 H, H4), 7.03 (d, J » 8,7 Hz, 2H , H12), 6.58 (d, J - 8.7 Hz, 2.H H13), 4,52 (s, 2H, SC ½), 4.08 (q, J * 7.2 Hz, 2H, CO2CH2CH3), 3.51 (s, 3H, NGW3), 1 ,23 <ts J * 7.1 Hz, 3H, C02CH2C¾). Sc (150 MHz, DMSO) 164.2, 157.9, 49.2, 144.3, 135,7, 131.4, 126.1 , 1214, 15.9, 1 14.1 , 106.3, 102.9, 79.2, 59.0, 55.4, 30.0, 14.3, Rf; 0,5 (2% MeOH in CHsCfa). HRMS- {ESI-TOF): Ci?H,8BrN04S: ([ + ) requires 436.0213, found 436.0213.
Ethyl 5*acetoxy-6-brQffio-2~f{C3-m©thD he^^
carboxyf ate 18a: 3~methpxythiophenoi (14.6 μ'!_, 0.118 mmo!, 1.0 eg.) was added to a solution of sodium carbonate (37.4 mg, 0.353 rrtmoi, 3.Q eq.) and bromo indoles 2 (46.0 mg, 0.118 rornoi, .0 eq.) in dry ethyl acetate (20 ml). The reaction was heated to 50 °C and stirred for 2 h before addition of water. The organic layer was separated, dried (Na^O ) and concentrated .in vacuo. The compound was purified by column chromatography (20% EtOAc in Hexanes) to produce the title product as a white solid (34 mg, 59%). UMR; δΗ (600 MHz, DMSO) 7,92 (s, 1 H, Hi), 7.6.6 (s, 1 H, ¾), 7.13 (t, J = 7.9 Hz, 1H, /½), 6.8.7 - 6.84 (m, 1 H, Hi4, 6.79■- 6.74 (m, 2H, Hw and' /½), 4.77 (s, 2H, SCffe), 4,13 (q, J ^ 7.1 Hz, 2H, C02CW2CHs}, 3,70 (s, 3H, NCHj), 3.58 {s, 3H, SPhOCH}), 2,27 {s, 3H, COCH3),- 1.20 (t, J ~ 7.1 Hz, 3H, CO2CH2CW3). ¾ (150 MHz, DMSO) 169.1 , 163.9, 159.4, 144.9, 142.6, 135.1 , 135.Q, 129,9, 125,2, 123,3, 116.2, 115,1 , 114.7, 113.5, 110.3, 104,3, 59.5, 55.1 , 30.6, 28.1 , 20.7, 14,3. Rf: 0.4 (20% EtOAc in Hexane). HR S (ESI- OF): C22H22BrNOsS ([ +H]*} requires 492.0475, found 492.0472.
Ethyl 6-brGmo-5~hy r0xy«2~{¾^
carboxyla e 18: Sodium carbonate (41.3 mg, 0.390 mmol, 2.0 eq.) was added to a stirred solution of meta-methoxy indole 18a (96,0 mg, 0.195 mmot, 1.0 eq.) in methanol (10 mL) and left to stir for 2h, The solution was then filtered and the solvent removed in vacuo. The product- was re-dissolved in ethyl acetate (10 mL) and washed once with water (10 ml) before drying (NazSC ) a d concentrating in vacuo to give the title product as a white solid, which could he used without further purification (80 mg, 91%}, NMR: δΗ (600 MHz, GDCis) 7.73 (s, 1H, Ηή, 7,41 (s, 1 H, ¾), 7.17 - 7.13 (m, ½), 7.07 (irn, . 1 H, . H )t 6,96 (dt, J ~ 7.7, 1.3, I H, i0)x 6.85 (m, 1H, Wi2), 4.71 (s, 2H, SC fc), 4.30 \ - J = 7.1 Hz, 2H, G02CH2CH3)( 3,63 (s, 3H, NCHs), 1.41 (t, J - 7.1 Hz, 3H GOsCH2G ¾). 5c (150 MHz, CDCfe) 165,2, 159,8, 147.7, 135.4, 132.6, 129.8, 12.7.2, 124.6, 119.7, 1 17,3, 114.1 , 112.5, 107.5, 107.3, 105.0, 59.9, 55.4, 29.9, 29.6, 14,7 Rf:. 0.55 (1% MeOH in CH2C!2}. HR S ESl-TOF): C20H?oBrN:04S <[M*Hf) requires 450.0369, found 450,0367.
Ethyl 6-brorno^{(dimethySam o)meihy)^
meetyMW-in'iioIe-3-ca'rbox iiate 19? Ortho-hydroxy indqie:16 (13.5 mg, 0,0309 rnmol, 1,0 eq.) and N, , AJ, W-tetramethyldiaminomethane (12.7 μί, 0.0928 mmoi, 3,0 eq.) were dissolved in 1,4-dioxane (2.0 mL). The reaction was heated io reflux for 3,5 h before removing the solvent in vacuo to yield the title product as a white solid (13 mg, 85 %). HMR: ¾H (500 MHz, MeOD) 7.53 (s, 1Ή, H7), 7.19 - 7,11 (m, 1H,
Figure imgf000019_0001
7.6, .7 Hz, 1H, #«), 6 -86 - 6.78 (m, TH, H ), 6.63 (dt, J - 13.7, 7.6 Hz, 1H, Hf5), 4.48 (s, 2H, C½Sph), 4.34 (s, 2H, CM>NMe2), 4.22 (dq, J * 10.8, 7,1, 6.3 Hz, 2H, C02GH2CHs), 3.56 (s, 3H, HCH3), 2.49 (d, J* 11.4 Hz, 6H, CH2N(CW3)2), 1.42 ~ 1.37 (m, 3H, COzCH^CHs. Sc (I SO MHz, MeOD) 167.5, 160.4, 155.0, 144,6, 137.0, 136.6, 132.5, 131.6, 130.6, 126.1, 120,3, 116.8, 114.5, 112.6, 110.6, 106.0, 68.1, 61 ,4, 60.1, 43.5, 29.9, 14.6. Rf: 0.4 (5% MeOH in CH2CI2), HRMS (ES1-TOF): CaHasB NzO-iS ([M+Hj+) requires 493,0791, found 493.0793.
Ethyl 63rom0-4"{{d!m@thyiamifiO)met^^
methyi-1 f -indoie-S-car oxyiaie 21 : Sodium carbonate (17,5 mg, 0165 mmoi, 3.0 eq.) was added to a stirred solution of meta-rnethoxy indole 18 (27.0 mg, 0.055 mmoi, 1.0 eq.) in- ethyl acetate (8 mi..} and methanol (1 mL). The solution was left to stir for 3h before filtering and removing the solvent in vacuo. The compound was then re-dissoived in 1 ,4-dioxane (5 mL) and W,MW', VHeramethy!diaminOfn'ethane (5.5 ,uL, 0.04 mmoi, 3.0 eq.) as added. The reaction was heated to reflux overnight before removing the solvent in vacuo. Purification by preparative TLC (5% MeOH In CH2CI2) yielded the title product as a pale yellow solid (7 mg, 24%). NMR: δΜ (600 MHz, GD<¾) 7.44 <s, 1H, tt7), 7.19 (t, J =7.9 Hz, 1H, Hi5), 6.96 (rn, 1H, Hi4), 6.82 (m, 1H, W10), 6.77 (m, 1H, 12), 4.52 (s, 2H, C½SPh), 4.21 (qd, J = 7.2, 0,8 Hz, 2H, CO2CH2CH3), 4.1? (s, 2H, CftNMej), 3.66 (s, 3H, HQH3), 3.58 (s, 3H, OC fc), 2.38 (s, 6H, G 2H{GH3k)..1.34 (m, 3H, CO2CH2CH3).5c (150 MHz, CDCis) 165.6, 159.9, 151.7, 141.7, 135.5,131.9, 129.9, 124.7, 11 .5,: 114.2, 113.1, 1 2.6, 108.6.106.2, 60.5, 59.9, 55.3, 44.2, 30.5, 29.9, 14.5. f¾: 0.35 (5% MeOH in CM2CI2). HUMS
Figure imgf000019_0002
((M+H ) requires 523.0897, found 523.0894. Biological Procedures
OCTET Bio-Layer fnierferomelry Data and Testing: Κ was determined by BLJ using an Octet Red instrument (ForteBio). Biofinylated HAs, purified as described previously", were used for these measurements. HAs at -10-60 pg m!"1 m i x kinetics buffer (1 * PBS, pH 7.4, 0.01 % BSA and 0.002% Tween 20). ere loaded onto streptavid in- coated biosensors and incubated with varying concentrations of small molecule in solution.. All binding data were collected -at 30. °C. The experiments comprised five steps: (1 ) baseline acquisition {60 s); (2) HA loading onto sensor (1800 s); (3) second baseline acquisition (120 s); (4). association of small molecule for the measurement of fen (180 s); and (5) dissociation of small molecule for the. measurement of feff (18Q s). Baseline and dissociation steps were carried out in. buffer only. The ratio of f w- to fe« determines the % reported here.
Results of OCTET Biolayer Inierferometry Test
See Figure 4.

Claims

CLAIMS What, is claimed is:
1. A method of inhibiting the bioactivity of a v!rai hemagglutinin (HA) molecule that is displayed on the surface of the Influenza virus, comprising contacting the hemagglutinin molecule with an effective- concentration of a compound of formula (A)
Figure imgf000021_0001
wherein X is S or 0.
The method of claim 1. wherein .the compound of formula (A) is the compound of formula
Figure imgf000021_0002
3. A method of treating or preventing an influenza viral infection in a patient, comprising administering to the patient an effective: dose: of a compound of formula (A)
Figure imgf000021_0003
The method of claim 3, wherein the compound of formula (A) is the compound of formula
Figure imgf000022_0001
PCT/US2017/066275 2016-12-16 2017-12-14 Arbidol analogs with improved influenza hemagglutinin potency WO2018112128A1 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201662435232P 2016-12-16 2016-12-16
US62/435,232 2016-12-16

Publications (1)

Publication Number Publication Date
WO2018112128A1 true WO2018112128A1 (en) 2018-06-21

Family

ID=62559809

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2017/066275 WO2018112128A1 (en) 2016-12-16 2017-12-14 Arbidol analogs with improved influenza hemagglutinin potency

Country Status (1)

Country Link
WO (1) WO2018112128A1 (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN116003308A (en) * 2022-12-27 2023-04-25 石家庄中硕制药有限公司 Abidol crystallization process

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20090326037A1 (en) * 2005-12-28 2009-12-31 Irina Anatolievna Leneva Medicinal Agent For Treating Viral Infections
US7960427B2 (en) * 2004-03-12 2011-06-14 Shenyang Pharmaceutical University 5-hydroxyindole-3-carboxylate derivatives and uses thereof
WO2014075618A1 (en) * 2012-11-15 2014-05-22 沈阳药科大学 Heterocyclic ring-containing 5-hydroxy indole derivative and use thereof

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7960427B2 (en) * 2004-03-12 2011-06-14 Shenyang Pharmaceutical University 5-hydroxyindole-3-carboxylate derivatives and uses thereof
US20090326037A1 (en) * 2005-12-28 2009-12-31 Irina Anatolievna Leneva Medicinal Agent For Treating Viral Infections
WO2014075618A1 (en) * 2012-11-15 2014-05-22 沈阳药科大学 Heterocyclic ring-containing 5-hydroxy indole derivative and use thereof

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
SHEN ET AL.: "New small-molecule drug design strategies for fighting resistant influenza A", ACTA PHARMACEUTICA SINICA B, vol. 5, 6 September 2015 (2015-09-06), pages 419 - 430, XP055510214 *
WRIGHT ET AL.: "Structure-based optimization and synthesis of antiviral drug Arbidol analogues with significantly improved affinity to influenza hemagglutinin", BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, vol. 27, 15 August 2017 (2017-08-15), pages 3744 - 3748, XP085144487 *

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN116003308A (en) * 2022-12-27 2023-04-25 石家庄中硕制药有限公司 Abidol crystallization process
CN116003308B (en) * 2022-12-27 2023-09-29 石家庄中硕制药有限公司 Abidol crystallization process

Similar Documents

Publication Publication Date Title
Wright et al. Structure-based optimization and synthesis of antiviral drug Arbidol analogues with significantly improved affinity to influenza hemagglutinin
JP6806413B2 (en) Polycyclic pyridone derivatives and their prodrugs
He et al. 1, 2, 3-Triazole-containing derivatives of rupestonic acid: click-chemical synthesis and antiviral activities against influenza viruses
HUE030685T2 (en) Macrocyclic purines for the treatment of viral infections
EA020374B1 (en) Benzosulfonamide derivatives, pharmaceutical compositions based thereon and use thereof
RU2769050C1 (en) Crystalline form and salt form of a pyridoimidazole compound and a corresponding method of producing
Artyushin et al. Synthesis of camphecene and cytisine conjugates using click chemistry methodology and study of their antiviral activity
Khan et al. A facile synthesis of novel indole derivatives as potential antitubercular agents
Harfenist et al. 2-(Alkoxyaryl)-2-imidazoline monoamine oxidase inhibitors with antidepressant activity
Marvadi et al. 5-Chloro-2-thiophenyl-1, 2, 3-triazolylmethyldihydroquinolines as dual inhibitors of Mycobacterium tuberculosis and influenza virus: Synthesis and evaluation
WO2018112128A1 (en) Arbidol analogs with improved influenza hemagglutinin potency
Wu et al. Synthesis of Pyrazine‐1, 3‐thiazine Hybrid Analogues as Antiviral Agent Against HIV‐1, Influenza A (H1N1), Enterovirus 71 (EV 71), and Coxsackievirus B3 (CVB 3)
WO2013036766A1 (en) Small molecule naphthoquinone- and phthalimide-based lipocations as anti-parasitic agents
CA3140767A1 (en) Benzo[h][1,6] naphthyridin-2(1h)-ones as bmx inhibitors, for use against cancer
Vembu et al. Synthesis, in vitro antifungal and antitubercular evaluation of novel amino pyrimidines based tetrazole derivatives
Goto et al. Synthesis and biological evaluation of triazole analogues of antillatoxin
Matsuya et al. Synthesis and anti-influenza virus activity of dihydrofuran-fused perhydrophenanthrenes with a benzyloxy-type side-chain
Maether et al. Synthesis and antiplasmodial activity of streptocyanine/peroxide and streptocyanine/4-aminoquinoline hybrid dyes
Wang et al. Amidation–Ketonization–Selenation of Terminal Alkynes Using TEMPO and Elemental Selenium
Kumar et al. Synthesis, molecular docking studies and antibacterial evaluation of Baylis-Hillman adducts of coumarin and pyran derivatives using ionic liquid under microwave irradiation
El‐Nezhawy et al. Design, Synthesis, and Molecular Docking of Novel Pyrrolooxazepinediol Derivatives with Anti‐Influenza Neuraminidase Activity
RU2330018C2 (en) Derivative 4-aminomethyl-6-bromine-5-hydroxyindole-3-carboxylate, methods of their obtaining (versions) and their application
JP6710376B2 (en) HIV infection inhibitor
Baranov et al. Ring-expanding rearrangement of 2-acyl-5-arylidene-3, 5-dihydro-4H-imidazol-4-ones in synthesis of flutimide analogs
Zhang et al. Design, Synthesis, and Structure–Activity Relationship Study of Epoxysuccinyl–Peptide Derivatives as Cathepsin B Inhibitors

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 17879831

Country of ref document: EP

Kind code of ref document: A1

NENP Non-entry into the national phase

Ref country code: DE

122 Ep: pct application non-entry in european phase

Ref document number: 17879831

Country of ref document: EP

Kind code of ref document: A1