WO2017062688A1 - Wnt signaling pathway inhibitors and therapeutic applications thereof - Google Patents

Wnt signaling pathway inhibitors and therapeutic applications thereof Download PDF

Info

Publication number
WO2017062688A1
WO2017062688A1 PCT/US2016/055851 US2016055851W WO2017062688A1 WO 2017062688 A1 WO2017062688 A1 WO 2017062688A1 US 2016055851 W US2016055851 W US 2016055851W WO 2017062688 A1 WO2017062688 A1 WO 2017062688A1
Authority
WO
WIPO (PCT)
Prior art keywords
substituted
unsubstituted
alkyl
independently selected
groups
Prior art date
Application number
PCT/US2016/055851
Other languages
French (fr)
Inventor
Xiaohu Zhang
Original Assignee
Suzhou Yunxuan Yiyao Keji Youxian Gongsi
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from CN201510645986.2A external-priority patent/CN105254613A/en
Priority claimed from CN201610670828.7A external-priority patent/CN107759584B/en
Priority claimed from CN201610850357.8A external-priority patent/CN107286135B/en
Priority claimed from CN201610850358.2A external-priority patent/CN107286136B/en
Application filed by Suzhou Yunxuan Yiyao Keji Youxian Gongsi filed Critical Suzhou Yunxuan Yiyao Keji Youxian Gongsi
Priority to EP16854369.2A priority Critical patent/EP3359154B1/en
Priority to US15/766,799 priority patent/US10450300B2/en
Priority to JP2018518629A priority patent/JP6853819B2/en
Priority to KR1020187013073A priority patent/KR20180061363A/en
Publication of WO2017062688A1 publication Critical patent/WO2017062688A1/en
Priority to US16/653,217 priority patent/US20200048223A1/en

Links

Classifications

    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/44Non condensed pyridines; Hydrogenated derivatives thereof
    • A61K31/4427Non condensed pyridines; Hydrogenated derivatives thereof containing further heterocyclic ring systems
    • A61K31/444Non condensed pyridines; Hydrogenated derivatives thereof containing further heterocyclic ring systems containing a six-membered ring with nitrogen as a ring heteroatom, e.g. amrinone
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/47Quinolines; Isoquinolines
    • A61K31/4709Non-condensed quinolines and containing further heterocyclic rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/47Quinolines; Isoquinolines
    • A61K31/472Non-condensed isoquinolines, e.g. papaverine
    • A61K31/4725Non-condensed isoquinolines, e.g. papaverine containing further heterocyclic rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/505Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim
    • A61K31/506Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim not condensed and containing further heterocyclic rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/505Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim
    • A61K31/517Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with carbocyclic ring systems, e.g. quinazoline, perimidine
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/53Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with three nitrogens as the only ring hetero atoms, e.g. chlorazanil, melamine
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/54Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and one sulfur as the ring hetero atoms, e.g. sulthiame
    • A61K31/541Non-condensed thiazines containing further heterocyclic rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K45/00Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
    • A61K45/06Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00

Definitions

  • the present invention generally relates to heterocyclic compounds and, more particularly, relates to novel heterocyclic compounds that are useful in therapies targeting the Wnt signaling pathway mediated diseases, such as cancer, in mammals.
  • the Wnt signaling pathway has critical roles in developmental pathways, including regulatory roles in cell proliferation, tissue patterning, and cell fate, migration,
  • the canonical Wnt signaling pathway is activated by Wnt proteins that interact with seven-pass transmembrane receptors of the Frizzled (Fzd) family and single-pass transmembrane co-receptors, such as lipoprotein receptor-related protein 5/6 (LRP5/6).
  • Wnt proteins that interact with seven-pass transmembrane receptors of the Frizzled (Fzd) family and single-pass transmembrane co-receptors, such as lipoprotein receptor-related protein 5/6 (LRP5/6).
  • Such interaction activates the Wnt signaling pathway by recruiting and activating the Dishevelled (Dvl) protein, which, in turn, silences glycogen synthase kinase 3 ⁇ (GSK3 ⁇ ) within a destructive complex formed by adenomatous polyposis coli (APC) protein, GSK3 ⁇ , Axin, and a priming kinase for ⁇ -catenin called casein kinase 1 ⁇ (CK1 ⁇ ).
  • the destructive complex can phosphorylate ⁇ -catenin for its degradation.
  • cytoplasmic ⁇ -catenin can be stabilized and accumulated in the presence of lymphoid enhancing factor/T-cell factor (LEF/TCF) transcription factors so that ⁇ -catenin can be
  • Cancer (2004) 109:106-111 decrease of neural precursor cells (Chenn and Walsh, Science (2002) 297:365-9), pathogenesis of sporadic medulloblastoma (Dahmen et al., Cancer Res. (2001) 61:7039-43), malignant proliferation of cancer cells due to disruption of Wnt signaling pathway in stem and progenitor cells (Reya and Clevers, Nature (2005) 434:843-850).
  • the present invention provides compounds of Formula I:
  • A is A1, A2, A3 or A4;
  • U is U1, U2, U3 or U4;
  • L is L1, L2, or L3;
  • Q is Q1, Q2, Q3 or Q4;
  • Z is Z1, Z2, Z3 or Z4;
  • X 1 to X 7 are independently selected from N and C ⁇ R 13 ;
  • X 13 and X 15 are independently O, N, S or
  • U1 is , wherein X 8 to X 10
  • G 1 and G 2 are independently selected from N and C; 3
  • V 1 and V 2 are independently selected from N, O, S and C ⁇ R 15 ;
  • V 5 connects with V 2 ;
  • U2 is C 6 -C 10 aryl, 5-12 membered heteroaryl, 11-13 membered heterocyclophenyl or 10-13 membered heterocycloheteroaryl, wherein heterocyclo and heteroaryl comprises 1 to 4 heteroatoms independently selected from N, O and S; and
  • C 6 -C 10 aryl, 5-12 membered heteroaryl, 11-13 membered heterocyclophenyl and 10- 13 membered heterocycloheteroaryl are unsubstituted or substituted with 1 to 4 R 6a groups;
  • U3 is ⁇ OR 14b , ⁇ NR 14b R 15b , C 6 -C 12 aryl unsubstituted or substituted with 1-6 R 13b group, 5-14 membered heteroaryl unsubstituted or substituted with 1-6 R 13b group, 11-13 membered heterocyclophenyl unsubstituted or substituted with 1-6 R 13b group, 10-13 membered heterocycloheteroaryl unsubstituted or substituted with 1-6 R 13b group, C 2 -C 8 alkenyl substituted with 5-6 membered aryl or heteroaryl, C 2 -C 8 alkynyl substituted with 5-6 membered aryl or
  • heteroaryl or unsubstituted or substituted with 1 to 2 R 13b groups, wherein heterocyclo and heteroaryl comprises 1 to 4 heteroatoms independently selected from N, O and S; and
  • X 11 is N or C ⁇ R 13b ;
  • X 10 are independently selected from N and C ⁇ R 15c ;
  • G 1 and G 2 are independently selected from N and C; 4
  • V 1 and V 2 are independently selected from N, O, S and C ⁇ R 16c ;
  • V 3 , V 4 ⁇ V 5 or V 4 V 5 , wherein V 3 to V 5 are independently selected from N, O, S and C ⁇ R 17c , wherein V 4 connects with V 1 ; and
  • V 5 connects with V 2 ;
  • Y 2 is blank, ⁇ O ⁇ , ⁇ S ⁇ , ⁇ N(R 18b ) ⁇ or ⁇ C(R 18b )(R 19b ) ⁇ ;
  • L3 is ⁇ C(R 2c )(R 3c ) ⁇ or ⁇ NHCH 2 CH 2 ⁇ ;
  • Q1 is C 6 -C 10 arylene or 5-12 membered heteroarylene, wherein 5-12 membered heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S; and
  • C 6 -C 10 aryl and 5-12 membered heteroarylene are unsubstituted or substituted with 1 to 4 R 17 groups;
  • Q2 is C 6 -C 10 arylene or 5-10 membered heteroarylene, wherein 5-10 membered heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S; and
  • C 6 -C 10 arylene and 5-10 membered heteroarylene are unsubstituted or substituted with 1 to 4 R 4a groups;
  • Q3 is C 6 -C 12 arylene unsubstituted or substituted with 1-6 R 6b group, 5-14 membered heteroarylene unsubstituted or substituted with 1-6 R 6b group, C 3 -C 6 cycloalkylene unsubstituted or substituted with 1-6 R 6b group, C 3 -C 6 heterocylene unsubstituted or
  • heterocyclene and heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S;
  • X 12 is N or C ⁇ R 6b ; 5
  • Q4 is C 6 -C 10 arylene or 5-12 membered heteroarylene, wherein 5-12 membered heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S; and
  • C 6 -C 10 arylene and 5-12 membered heteroarylene are unsubstituted or substituted with 1 to 4 R 5c groups;
  • Z1 is ⁇ CN, C 6 aryl, 5-6 membered heteroaryl, or , wherein 5-6 membered heteroaryl comprises 1 to 3 heteroatoms independently selected from N, O and S;
  • C 6 aryl and 5-6 membered heteroaryl are unsubstituted or substituted with 1 to 3 R 18 groups;
  • Y 1 is O or NR 20 ;
  • q 0, 1, 2, or 3;
  • Z2 is H, ⁇ CN, halide, ⁇ OH, C 1 -C 8 alkyl, C 3 -C 8 cycloalkyl, C 2 -C 8 alkenyl, C 2 -C 8 alkynyl, C 1 -C 8 alkylsulfonyl, C 1 -C 8 acyl, aminoacyl, C 1 -C 8 acylamino, C 1 -C 8 alkylcarbamoylamino, C1-C8 alkoxycarbamoyl, C1-C8 alkylsulfonamido, C1-C8 alkylaminosulphonyl, C 1 -C 8 alkoxy, C 2 -C 8 alkoxyacyl, phenyl, 5-6 membered heteroaryl, or 5-7 membered heterocyclo, wherein 5-6 membered heteroaryl and 5-7 membered heterocyclo comprise one or more hetero atoms independently selected from N, O and S; and
  • phenyl, 5-6 membered heteroaryl and 5-7 membered heterocycle are unsubstituted or substituted with 1 to 3 R 5a groups;
  • Z3 is H, ⁇ CN, halide, ⁇ OH, C 1 -C 8 alkyl unsubstituted or substituted with 1 to 3 R 12b groups, C 3 -C 8 cycloalkyl, C 2 -C 8 alkenyl, C 2 -C 8 alkynyl, C 1 -C 8 alkylsulfonyl, C 1 -C 8 acyl, aminoacyl, C 1 -C 8 acylamino, C 1 -C 8 alkylcarbamoylamino, C 1 -C 8
  • alkoxycarbamoyl C 1 -C 8 alkylsulfonamido, C 1 -C 8 alkylaminosulphonyl, C 1 -C 8 alkoxy, C 2 -C 8 alkoxyacyl, ⁇ N(R 7b )(R 8b ) unsubstituted or substituted with 1 to 3 R 12b groups, phenyl unsubstituted or substituted with 1 to 3 R 9b groups, 5-6 membered heteroaryl unsubstituted or substituted with 1 to 3 R 10b groups, or 5-7 membered heterocyclo unsubstituted or substituted with 1 to 3 R 11b groups, wherein 5-6 membered heteroaryl 6
  • 5-7 membered heterocyclo comprises 1-3 hetero atoms independently selected from N, O and S;
  • Z4 is ⁇ CN, C 6 aryl, 5-6 membered heteroaryl, or , wherein 5- 6 membered heteroaryl comprises 1 to 3 heteroatoms independently selected from N, O and S;
  • C 6 aryl and 5-6 membered heteroaryl are unsubstituted or substituted with 1 to 3 R 6c groups;
  • Y 3 is O or NR 8c ;
  • q 0, 1, 2, or 3;
  • R 1 to R 3 are independently selected from H and C 1 -C 6 alkyl, wherein C 1 -C 6 alkyl is unsubstituted or substituted with 1 to 3 halide, ⁇ CN, ⁇ OH, C 1 -C 3 alkyl, C 3 -C 5 cycloalkyl, or C 1 -C 3 alkoxy groups;
  • R 4 is H, halide, ⁇ CN, ⁇ OH, ⁇ NO 2 , C 1 -C 6 alkyl, C 3 -C 8 cycloalkyl, or C 1 -C 6 alkoxy, wherein C 1 -C 6 alkyl, C 3 -C 8 cycloalkyl and C 1 -C 6 alkoxy are unsubstituted or substituted with 1 to 3 halide;
  • R 5 and R 6 are independently selected from H, halide, ⁇ CN, ⁇ OH, amino, C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl and C 1 -C 6 alkoxy, wherein C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl and C 1 -C 6 alkoxy are unsubstituted or substituted with 1 to 3 halide;
  • R 9 to R 12 are independently selected from H, C 1 -C 6 alkyl
  • R 13 is H, halide, ⁇ CN, ⁇ OH, amino, ⁇ NO 2 , C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl, C 1 -C 6 alkoxy, C 1 -C 6 alkylthio or 1-pyrrolidino, wherein amino, C 1 -C 6 alkyl and C 1 -C 6 alkoxy are unsubstituted or substituted with 1 to 3 halide, C 1 -C 3 alkyl or C 3 -C 6 cycloalkyl groups;
  • R 14 to R 17 are independently selected from H, halide, ⁇ CN, ⁇ OH, amino, C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl, C 1 -C 6 alkoxy and C 1 -C 6 alkylthio, wherein amino, C 1 -C 6 alkyl and C 1 -C 6 alkoxy are unsubstituted or substituted with 1 to 3 halide, C 1 -C 3 alkyl or C 3 -C 6 cycloalkyl groups; 7
  • R 18 is H, halide, ⁇ CN, ⁇ OH, amino, C1-C6 alkyl, C3-C6 cycloalkyl or C1-C6 alkoxy, wherein amino, C 1 -C 6 alkyl and C 1 -C 6 alkoxy are unsubstituted or substituted with 1 to 3 halide, C 1 -C 3 alkyl or C 3 -C 6 cycloalkyl groups;
  • R 19 and R 20 are independently selected from H and C 1 -C 3 alkyl, or R 19 and R 20 together, with adjacent atoms they attached to, form a cyclic structure;
  • R 4a , R 5a and R 6a are independently selected from halide, ⁇ CN, and ⁇ OH, or R 4a , R 5a and R 6a are independently selected from C 1 -C 8 alkyl, C 3 -C 8 cycloalkyl, C 1 -C 8 alkoxy, C2-C8 alkenyl, C2-C8 alkynyl, C1-C8 alkylsulfonyl, C1-C8 acyl, aminoacyl, C1-C8 acylamino, C 1 -C 8 alkylcarbamoylamino, C 1 -C 8 alkoxycarbamoyl, C 1 -C 8
  • alkylsulfonamido C 1 -C 8 alkylaminosulphonyl, C 2 -C 8 alkoxyacyl, and 3-8 membered heterocycle, all of which are unsubstituted or substituted with 1-3 halide, ⁇ OH, ⁇ CN, C 1 -C 3 alkyl, C 1 -C 3 alkoxyl or C 3 -C 8 cycloalkyl groups, wherein 3-8 membered heterocycle comprises one or more hetero atoms from N, O or S;
  • R 2m is H, deuterium, tritium, halide, ⁇ OH, ⁇ CN, C 1 -C 8 alkyl, C 3 -C 8 cycloalkyl or C 1 - C 8 alkoxy;
  • R 2b and R 3b are independently selected from H, C 1 -C 6 alkyl unsubstituted or substituted with 1-3 groups selected from halide, ⁇ CN, ⁇ OH, C 1 -C 6 alkyl, C 3 -C 5 cycloalkyl and C 1 -C 3 alkoxy;
  • R 4b and R 5b are independently selected from H, halide, ⁇ CN, amino, C 1 -C 8 alkyl, C 3 - C 8 cycloalkyl, C 1 -C 8 alkoxy, and C 1 -C 3 alkylamino;
  • R 6b is H, halide, ⁇ CN or ⁇ OH, or R 6b is selected from amino, C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl, C 1 -C 6 alkoxy, and C 1 -C 3 alkylamino, all of which are unsubstituted or substituted with 1-3 halide, C 1 -C 3 alkyl, or C 3 -C 6 cycloalkyl groups;
  • R 7b and R 8b are independently selected from H, C 1 -C 8 alkyl and C 3 -C 8 cycloalkyl, the latter two of which are unsubstituted or substituted with 1-3 R 12b , or R 7 and R 8 together, with adjacent atoms they attached to, form a cyclic structure;
  • R 9b and R 10b are independently selected from H, halide, ⁇ CN and ⁇ OH, or R 9b and R 10b are independently selected from amino, C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl, and C 1 -C 6 alkoxy, all of which are unsubstituted or substituted with 1-3 halide, C 1 -C 3 alkyl, or C 3 -C 6 cycloalkyl groups;
  • R 11b is H, halide, ⁇ CN, ⁇ OH, amino, C 1 -C 6 alkyl unsubstituted or substituted with halide, C 3 -C 6 cycloalkyl, oxo, or C 1 -C 6 alkoxy;
  • R 12b is H, ⁇ CN, ⁇ OH, amino, C1-C6 alkyl unsubstituted or substituted with halide, C3- C 6 cycloalkyl, oxo, or C 1 -C 6 alkoxy;
  • R 13b is H, halide, ⁇ CN, ⁇ OH, amino, C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl, C 1 -C 6 alkoxy, C 2 - C 6 alkylcarbamoylamino, C 2 -C 6 alkoxycarbamoyl, C 1 -C 3 alkylsulphonyl,
  • R 14b and R 15b are independently selected from H, C 3 -C 6 cycloalkyl unsubstituted or substituted with 1 to 3 R 20b groups, C 1 -C 6 alkyl unsubstituted or substituted with 1 to 3 R 20b groups, 5-6 membered aryl unsubstituted or substituted with 1 to 3 R 20b groups, 5-6 membered heteroaryl unsubstituted or substituted with 1 to 3 R 20b groups, and 5-6 membered heterocyclo unsubstituted or substituted with 1 to 3 R 20b groups, wherein 5-6 membered heteroaryl and 5-7 membered heterocyclo comprise 1 to 3 hetero atoms independently selected from N, O and S, or R 14b and R 15b together, with adjacent atoms they attached to, form a cyclic structure;
  • R 16b to R 19b are independently selected from H and C 1 -C 6 alkyl unsubstituted or substituted with halide;
  • R 20b is H, ⁇ CN, ⁇ OH, amino, C 1 -C 6 alkyl, C 3 -C 6 cycloalkyl, C 1 -C 6 alkoxy, 5-6 membered aryl, or 5-6 membered heteroaryl, wherein 5-6 membered heteroaryl comprises 1 to 3 hetero atoms independently selected from N, O and S;
  • R 21b is H or C 1 -C 6 alkyl
  • R 2c and R 3c are independently selected from H and C 1 -C 6 alkyl unsubstituted or substituted with 1-3 halide;
  • R 4c is H, halide, C 1 -C 3 alkyl, C 3 -C 5 cycloalkyl, or C 1 -C 3 alkoxy;
  • R 5c and R 6c are independently selected from H, halide, ⁇ CN, ⁇ OH, amino, C 1 -C 6 alkyl unsubstituted or substituted with 1-3 halide, C 3 -C 5 cycloalkyl, and C 1 -C 6 alkoxy;
  • R 7c and R 8c are independently selected from H and C 1 -C 6 alkyl, or R 7c and R 8c together, with adjacent atoms they attached to, form a cyclic structure;
  • R 9c to R 14c are independently selected from H, C 1 -C 6 alkyl and ⁇ CF 3 ;
  • R 15c to R 17c are independently selected from H, halide, ⁇ CN, ⁇ OH, amino, C 1 -C 6 alkyl unsubstituted or substituted with 1-3 halide, C 3 -C 5 cycloalkyl, and C 1 -C 6 alkoxy.
  • the compound of Formula I comprises Q which is
  • Q 1 to Q 10 are independently N or C ⁇ R 17 .
  • the compound of Formula I comprises A which is
  • the compound of Formula I comprises U which is
  • the compound of Formula I comprises U which is selected from:
  • the compound of Formula I comprises Q which is selected
  • the compound of Formula I comprises Z which is selected from:
  • the compound of Formula I comprises Q which is selected from:
  • the compound of Formula I comprises Z which is selected from:
  • the compound of Formula I comprises U which is selected from:
  • the compound of Formula I comprises Z which is
  • O , or Z is selected from:
  • the compound of Formula I comprises A which is selected from:
  • herein provides a pharmaceutical composition
  • a pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 1 and a pharmaceutically acceptable carrier.
  • herein provides a method for regulating the Wnt signaling pathway and/or treating a Wnt- mediated disorder in a mammal suffering therefrom.
  • the method comprises administrating to a mammalian subject a therapeutically effective amount of at least one compound of formula I, or a pharmaceutical composition thereof, and optionally in combination with a second therapeutic agent.
  • the method can treat a cell proliferative disorder selected from the group consisting of systemic sclerosis, skin fibrosis, idiopathic pulmonary fibrosis, renal fibrosis, liver fibrosis, drug-induced fibrosis, radiation-induced fibrosis, colorectal cancer, breast cancer, head and neck squamous cell carcinoma, esophageal squamous cell carcinoma, non-small cell lung cancer, gastric cancer, pancreatic cancer, leukemia, lymphoma, neuroblastoma, retinoblastoma, sarcoma, osteosarcoma, chondosarcoma, Ewing's sarcoma, rhabdomysarcoma, brain tumor, Wilms’ tumor, basal cell carcinoma, melanoma, head and neck cancer, cervical cancer and prostate cancer.
  • a cell proliferative disorder selected from the group consisting of systemic sclerosis, skin fibrosis, idiopathic pulmonary fibro
  • FIG.1 depicts the IC50 curve of compound A-12 of the present invention in the primary assay
  • FIG.2 depicts the IC50 curve of compound A-36 of the present invention in the primary assay
  • FIG.3 depicts the IC50 curve of compound A-100 of the present invention in the primary assay
  • FIG.4 depicts the IC50 curve of compound A-103 of the present invention in the primary assay
  • FIG.5 depicts the IC50 curve of compound A-166 of the present invention in the primary assay
  • FIG.6 depicts the IC50 curve of compound A-168 of the present invention in the primary assay
  • FIG.7 depicts the IC50 curve of compound A-194 of the present invention in the primary assay.
  • FIG.8 depicts the IC50 curve of compound A-198 of the present invention in the primary assay.
  • alkyl refers to a straight or branched chain saturated aliphatic hydrocarbon.
  • Alkyl groups include groups having from 1 to 8 carbon atoms (C 1-8 alkyl), from 1 to 6 carbon atoms (C 1-6 alkyl) and from 1 to 4 carbon atoms (C 1-4 alkyl), including, for example, methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, tert-butyl, pentyl, 2-pentyl, isopentyl, neopentyl, hexyl, 2-hexyl, 3-hexyl and 3-methylpentyl.
  • a substituent of an alkyl group is specifically indicated.
  • “cyanoalkyl” refers to an alkyl group substituted with at least one cyano substituent.
  • Alkenyl refers to straight or branched chain alkene groups, which comprise at least one unsaturated carbon-carbon double bond. Alkenyl groups include C 2-8 alkenyl, C 2-6 alkenyl and C2-4 alkenyl groups, which have from 2 to 8, 2 to 6 or 2 to 4 carbon atoms, respectively, including, for example, ethenyl, allyl or isopropenyl. "Alkynyl” refers to straight or branched chain alkyne groups, which have one or more unsaturated carbon-carbon bonds, at least one of which is a triple bond. Alkynyl groups include C 2-8 alkynyl, C 2-6 alkynyl and C 2-4 alkynyl groups, which have from 2 to 8, 2 to 6 or 2 to 4 carbon atoms, respectively.
  • a "cycloalkyl” is a group that comprises one or more saturated rings in which all ring members are carbon, including, for example, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, adamantyl. Cycloalkyl groups do not comprise an aromatic ring or a heterocyclic ring. Certain cycloalkyl groups are C 3-7 cycloalkyl, in which the cycloalkyl group contains a single ring having from 3 to 7 ring members, all of which are carbon.
  • A“cycloalkenyl” is a group that comprises one or more unsaturated rings in which all ring members are carbon.
  • Alkoxy is meant an alkyl group as described above attached via an oxygen bridge.
  • Alkoxy groups include C 1-6 alkoxy and C 1-4 groups, which have from 1 to 6 or from 1 to 4 carbon atoms, respectively.
  • Methoxy, ethoxy, propoxy, isopropoxy, n-butoxy, sec-butoxy, tert-butoxy, n-pentoxy, 2-pentoxy, 3-pentoxy, isopentoxy, neopentoxy, hexoxy, 2-hexoxy, 3- hexoxy, and 3-methylpentoxy are representative alkoxy groups.
  • Alkylamino refers to a secondary or tertiary amine that has the general structure -NH-alkyl or -N(alkyl)(alkyl), wherein each alkyl is selected independently from alkyl, cycloalkyl and (cycloalkyl)alkyl groups.
  • groups include, for example, mono- and di- (C 1-6 alkyl)amino groups, in which each C 1-6 alkyl may be the same or different.
  • alkyl as used in the term “alkylamino” differs from the definition of "alkyl” used for all other alkyl-containing groups, in the inclusion of cycloalkyl and (cycloalkyl)alkyl groups.
  • Halogen means fluorine, chlorine, bromine, and iodine.
  • a "haloalkyl” is an alkyl group that is substituted with 1 or more independently chosen halogens (e.g., "C 1-6 haloalkyl” groups have from 1 to 6 carbon atoms and at least one halogen).
  • haloalkyl groups include, but are not limited to, mono-, di- or tri-fluoromethyl; mono-, di- or tri- chloromethyl; mono-, di-, tri-, tetra- or penta-fluoroethyl; mono-, di-, tri-, tetra- or penta- chloroethyl; and 1,2,2,2-tetrafluoro-l-trifluoromethyl-ethyl.
  • a "heteroaryl” is an aromatic group in which at least one aromatic ring comprises at least one heteroatom selected from N, O and S.
  • Heteroaryls include, for example, 5-12 membered heteroaryls. Examples included but are not limited to imidazole, furan, furazan, isothiazole, isoxazole, oxadiazole, oxazole, pyrazine, pyrazole, pyridazine, pyridine, pyrimidine, tetrazole, thiazole and thiophene.
  • heterocyclic refers to a ring structure containing 3-12 ring atoms, in which at least one ring atom is carbon and at least one ring atom is heteroatom selected from N, O, and S.
  • a heterocyclic group may be aromatic or non-aromatic.
  • Piperidine and oxetane are non-limiting examples of non-aromatic heterocycles.
  • Thiazole and pyridine are non- limiting examples of aromatic heterocycles.
  • a ring substituent may be a moiety such as a halogen, alkyl group, haloalkyl group or other group that is covalently bonded to an atom (preferably a carbon or nitrogen atom) that is a ring member.
  • Substituents of aromatic groups are generally covalently bonded to a ring carbon atom.
  • the term“pharmaceutically acceptable” when used with reference to a compound of formula I is intended to refer to a form of the compound that is safe for administration to a subject.
  • a free base, a salt form, a solvate, a hydrate, a prodrug or derivative form of a compound of formula I which has been approved for mammalian use, via oral ingestion or any other route of administration, by a governing authority or regulatory agency, 26
  • FDA Food and Drug Administration
  • salts Included in the compounds of formula I are the pharmaceutically acceptable salt forms of the free-base compounds.
  • pharmaceutically-acceptable salts embraces salts, commonly used to form alkali metal salts and to form addition salts of free acids or free bases, which have been approved by a regulatory agency. Salts are formed from ionic associations, charge-charge interactions, covalent bonding, complexation, coordination, etc. The nature of the salt is not critical, provided that it is pharmaceutically acceptable.
  • the compound(s) of formula I is used to treat a subject by administering the compound(s) as a pharmaceutical composition.
  • the compound(s) in one embodiment, is combined with one or more pharmaceutically acceptable excipients, including carriers, diluents or adjuvants, to form a suitable composition, which is described in more detail herein.
  • excipient denotes any pharmaceutically acceptable additive, carrier, adjuvant, or other suitable ingredient, other than the active pharmaceutical ingredient (API), which is typically included for formulation and/or administration purposes.
  • API active pharmaceutical ingredient
  • the terms“treat”, “treating,” “treatment,” and “therapy” as used herein refer to therapy, including without limitation, curative therapy, prophylactic therapy, and preventative therapy.
  • Prophylactic treatment generally constitutes either preventing the onset of disorders altogether or delaying the onset of a pre-clinically evident stage of disorders in individuals.
  • the phrase "effective amount" is intended to quantify the amount of each agent, which will achieve the goal of improvement in disorder severity and the frequency of incidence over treatment of each agent by itself, while avoiding adverse side effects typically associated with alternative therapies.
  • the effective amount in one embodiment, is administered in a single dosage form or in multiple dosage forms.
  • the compounds of the present invention which may be used in a suitable hydrated form, and/or the pharmaceutical compositions of the present invention, are formulated into pharmaceutically acceptable dosage forms or by other conventional methods known to those of skill in the art.
  • Actual dosage levels of the active ingredients in the pharmaceutical compositions of the present invention may be varied so as to obtain an effective amount of the active ingredient to achieve the desired therapeutic response for a particular patient, composition, and mode of administration, without being toxic to the patient.
  • the selected dosage level will depend upon a variety of factors including the activity of the particular compound of the present invention employed, the route of administration, the time of administration, the rate of excretion of the particular compound being employed, the duration of the treatment, other drugs, compounds and/or materials used in combination with the particular hedgehog inhibitor employed, the age, sex, weight, condition, general health and prior medical history of the patient being treated, and like factors well known in the medical arts.
  • a physician or veterinarian having ordinary skill in the art can readily determine and prescribe the effective amount of the pharmaceutical composition required.
  • the physician or veterinarian could start doses of the compounds of the invention employed in the pharmaceutical composition at levels lower than that required in order to achieve the desired therapeutic effect and gradually increase the dosage until the desired effect is achieved.
  • a suitable daily dose of a compound of the invention will be that amount of the compound which is the lowest dose effective to produce a therapeutic effect. Such an effective dose will generally depend upon the factors described above. Generally, intravenous, intracerebroventricular and subcutaneous doses of the compounds of this invention for a patient will range from about 0.0001 to about 100 mg per kilogram of body weight per day. The mode of administration can have a large effect on dosage. Higher doses may be used for localized routes of delivery.
  • the effective daily dose of the active compound may be administered as two, three, four, five, six or more sub-doses administered separately at appropriate intervals throughout the day, optionally, in unit dosage forms.
  • dose levels can vary as a function of the specific compound, the severity of the symptoms and the susceptibility of the subject to side effects. Dosages for a given compound disclosed herein are readily determinable by those of skill in the art by a variety of means.
  • One embodiment provides a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of formula I, or a stereoisomer, tautomer, hydrate, solvate or pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.
  • the present invention provides methods for regulating the Wnt signaling pathway and/or treating a Wnt- mediated disorder in a mammal suffering therefrom.
  • the method comprises administrating to a mammalian subject a therapeutically
  • the method comprises treating or preventing disorder is a cell proliferative disorder selected from the group consisting of systemic sclerosis, skin fibrosis, idiopathic pulmonary fibrosis, renal fibrosis, liver fibrosis, drug-induced fibrosis, radiation-induced fibrosis, colorectal cancer, breast cancer, head and neck squamous cell carcinoma, esophageal squamous cell carcinoma, non- small cell lung cancer, gastric cancer, pancreatic cancer, leukemia, lymphoma, neuroblastoma, retinoblastoma, sarcoma, osteosarcoma, chondosarcoma, Ewing's sarcoma, rhabdomysarcoma, brain tumor, WiIm' s tumor, basal cell carcinoma, melanoma, head and neck cancer, cervical cancer and prostate cancer.
  • disorder is a cell proliferative disorder selected from the group consisting of systemic sclerosis, skin fibrosis,
  • the compounds described herein are formulated into pharmaceutical compositions.
  • Pharmaceutical compositions are formulated in a conventional manner using one or more pharmaceutically acceptable inactive ingredients that facilitate processing of the active compounds into preparations that can be used pharmaceutically. Proper formulation is dependent upon the route of administration chosen.
  • a summary of pharmaceutical compositions described herein can be found, for example, in Remington: The Science and Practice of Pharmacy, Nineteenth Ed., Easton, Pa.: Mack Publishing Company (1995); Hoover, John E., Remington’s Pharmaceutical Sciences, Mack Publishing Co., Easton, Pennsylvania (1975); Liberman, H.A. and Lachman, L., Eds., Pharmaceutical Dosage Forms, Marcel Decker, New York, N.Y. (1980); and Pharmaceutical Dosage Forms and Drug Delivery Systems, Seventh Ed., Lippincott Williams & Wilkins (1999), herein incorporated by reference for such disclosure.
  • a pharmaceutical composition refers to a mixture of a compound of formula I with other chemical components (i.e. pharmaceutically acceptable inactive ingredients), such as carriers, excipients, binders, filling agents, suspending agents, flavoring agents, sweetening agents, disintegrating agents, dispersing agents, surfactants, lubricants, colorants, diluents, solubilizers, moistening agents, plasticizers, stabilizers, penetration enhancers, wetting agents, anti-foaming agents, antioxidants, preservatives, or one or more combination thereof.
  • the pharmaceutical composition facilitates administration of the compound to an organism.
  • therapeutically effective amounts of compounds described herein are administered in a pharmaceutical composition to a mammal having a disease, disorder, or condition to be treated.
  • the mammal is a human.
  • a therapeutically effective amount can vary widely depending on the severity of the disease, the age and relative health of the
  • the compounds can be used singly or in combination with one or more therapeutic agents as components of mixtures.
  • the pharmaceutical formulations described herein are administered to a subject by appropriate administration routes, including but not limited to, oral, parenteral (e.g., intravenous, subcutaneous, intramuscular), intranasal, buccal, topical, rectal, or transdermal administration routes.
  • the pharmaceutical formulations described herein include, but are not limited to, aqueous liquid dispersions, self-emulsifying dispersions, solid solutions, liposomal dispersions, aerosols, solid dosage forms, powders, immediate release formulations, controlled release formulations, fast melt formulations, tablets, capsules, pills, delayed release formulations, extended release formulations, pulsatile release formulations, multiparticulate formulations, and mixed immediate and controlled release formulations.
  • dosage units are tablets or capsules.
  • these contain an amount of active ingredient from about 1 to 2000 mg, advantageously from about 1 to 500 mg, and typically from about 5 to 150 mg.
  • a suitable daily dose for a human or other mammal vary widely depending on the condition of the patient and other factors, but, once again, can be determined using routine methods and practices.
  • Conventional formulation techniques include, e.g., one or a combination of methods: (1) dry mixing, (2) direct compression, (3) milling, (4) dry or non-aqueous granulation, (5) wet granulation, or (6) fusion.
  • Other methods include, e.g., spray drying, pan coating, melt granulation, granulation, fluidized bed spray drying or coating (e.g., wurster coating), tangential coating, top spraying, tableting, extruding and the like.
  • Methods of the present invention include the use of at least one compound of formula I, which inhibits hedgehog signaling in the regulation of repair and/or functional performance of a wide range of cells, tissues and organs, and have therapeutic and cosmetic applications ranging from regulation of neural tissues, bone and cartilage formation and repair, regulation of spermatogenesis, regulation of smooth muscle, regulation of lung, liver and other organs arising from the primitive gut, regulation of hematopoietic function, regulation of skin and hair growth, etc. Accordingly, the methods and compositions of the present invention include the use of the subject inhibitors for all such uses as inhibitors of hedgehog proteins may be implicated. Moreover, the subject methods can be performed on cells which are provided in culture (in vitro), or on cells in a whole animal (in vivo). 30
  • the compounds of the present invention can be prepared using various synthetic routes, including those described below, starting from commercially available materials.
  • Starting materials of the invention are either known, commercially available, or can be synthesized in analogy to or according to methods that are known in the art. Many starting materials may be prepared according to known processes and, in particular, can be prepared using processes described in the examples. In synthesizing starting materials, functional groups in some cases are protected with suitable protecting groups when necessary.
  • the invention further encompasses“intermediate” compounds, including structures produced from the synthetic procedures described, whether isolated or not, prior to obtaining the finally desired compound. Structures resulting from carrying out steps from a transient starting material, structures resulting from divergence from the described method(s) at any stage, and structures forming starting materials under the reaction conditions are all “intermediates” included in the invention. Further, structures produced by using starting materials in the form of a reactive derivative or salt, or produced by a compound obtainable by means of the process according to the invention and structures resulting from processing the compounds of the invention in situ are also within the scope of the invention.
  • New starting materials and/or intermediates, as well as processes for the preparation thereof, are likewise the subject of this invention.
  • such starting materials are used and reaction conditions so selected as to obtain the desired compound(s).
  • Starting materials of the invention are either known, commercially available, or can be synthesized in analogy to or according to methods that are known in the art. Many starting materials may be prepared according to known processes and, in particular, can be prepared using processes described in the examples. In synthesizing starting materials, functional groups in some cases are protected with suitable protecting groups when necessary. Protecting groups, their introduction and removal are described above.
  • Scheme 1 depicts a general synthetic route leading to the synthesis of compounds of Formula I.
  • Compounds of Formula I can be assembled from three components: M1, M2, and M4.
  • Component M1 can be formed from other precursors, as shown in examples vide infra.
  • Component M2 has two leaving groups (LG 1 and LG 2 ) which can undergo reactions with an amino group in component M1 and a chemical group (CG 1 ) in component M4 to form compounds of Formula I.
  • LG 1 and LG 2 can be selected from halide, CH 3 S(O) 2 ⁇ , triflate, tosylate, and mesylate.
  • CG 1 can be selected from borate, organotin, alkyne, amino, and amide groups.
  • Palladium catalyzed reactions of borate, organotin, alkyne, amide, or amino in CG 1 , or treating amino group in CG 1 with a base can form a covalent bond between A and U in M. Further modifications of A or U may be needed to complete the syntheses of compounds of Formula I. Alternatively, LG 2 can be converted to borate and CG 1 can be selected from Br, I, and triflate so that a palladium catalyzed reaction may form the covalent bond between A and U. Further, M1 may only contains shorter tails, such as Q-L- or L- to start with, and Z or Z-Q may be added later to complete the synthesis of compounds of Formula I.
  • Conditions for steps a and d can be: DIPEA, t-BuOH, 50-60 °C, overnight; DIPEA, i-PrOH, 60-80 °C overnight; Et 3 N, THF, rt, overnight; DIPEA, cyclohexanol, ZnCl 2 , 120 °C, 40 h; K 2 CO 3 , 32 DMSO, 120-135 °C, 10 h; Pd(AcO)2, BINAP, t-BuONa, dioxane, 100 °C, 12h; and DIPEA, THF, 50 °C, overnight.
  • Conditions for steps b and c can be: DIPEA, NMP, 120-130°C, overnight; DIPEA, THF, reflux, overnight; DIPEA, t-BuOH, 50 °C; NMP, 130 °C, 24 h; Pd(PPh 3 ) 4 , K 2 CO 3 , dioxane/H 2 O, 100-120 °C, overnight; Cs 2 CO 3 , Pd(PPh 3 ) 4 , dioxane/H 2 O, 100 °C, 12h; Pd(dppf)Cl 2 , dppf, K 3 PO 4 , dioxane, H 2 O, 100 °C, 12 h; Pd(dppf)Cl 2 , dioxane/H 2 O, 100 °C, 10h; and Pd(PPh 3 ) 4 , xantphos, Cs 2 CO 3 , dioxane, reflux, overnight.
  • Scheme 2 illustrates another general synthetic route leading the synthesis of compounds of Formula I.
  • LG 3 can be selected from halide, triflate, tosylate, and mesylate, while CG 2 can be a borate group.
  • LG 3 can be selected from halide, triflate, tosylate, and mesylate; and CG 2 can be a borate group.
  • Palladium catalyzed reaction can lead to the covalent bond formation between A and U in M8.
  • An ensuing reductive amination between M8 and M9 form the covalent bond between L and the amino group on A. Further alkylation of the amino group, if needed, may lead to compounds of Formula I.
  • Step e can be Na 2 CO 3 , Pd(PPh 3 ) 4 , EtOH, toluene, H 2 O, 90 °C, 12h; and K 2 CO 3 , Pd(PPh 3 ) 4 , dioxane/H 2 O, 80 °C, 10-12h.
  • Step f can be 1) EtOH, 90 °C, 12 h, 2) NaBH 4 ; and TFA, Et 3 SiH, MeCN, 80 °C.
  • Scheme 3 depicts a general synthetic route leading to the synthesis of compounds of Formula I.
  • Component M10 can be formed from other precursors, as shown in examples vide infra.
  • the OH group of M13 was converted to hydrogen in two steps to give M14.
  • the CG 3 group of M14 was converted to leaving group (LG 4 ) which can undergo reactions with an amino group in component M1 to form compounds of Formula I.
  • CG 3 can be selected from CH 3 S ⁇ and CH 3 O ⁇ groups.
  • LG 4 can be selected from CH 3 S(O) 2 ⁇ and HO ⁇ groups.
  • Conditions for steps l can be: LDA, THF, -60 °C, 1 h.
  • Conditions for steps m can be: NH 4 OAc, AcOH, 108 °C, 8 h.
  • Conditions for steps n can be: POCl 3 , 100 °C, 1 h.
  • Conditions for steps o can be: Pd(PPh 3 ) 4 , HCOOH, Et 3 N, DMSO, 100 °C, 1-3 h.
  • Conditions for steps p can be: HBr, H 2 O, 100 °C, 1 h; and Oxone, THF, H 2 O, r.t., 10 h.
  • Conditions for steps q can be: PyBOP, DIPEA, DMF, r.t., 12 h; and DIPEA, NMP, 135 °C, 16 h.
  • EXAMPLE 1 Preparation of 5-fluoro-N-(4-(2-methylpyridin-4-yl)benzyl)-6- (naphthalen-2-yl)pyrimidin-4-amine (A-1)
  • Method A-Step a 6-chloro-5-fluoro-N-(4-(2-methylpyridin-4-yl)benzyl)pyrimidin-4- amine
  • Method A-Step b 5-fluoro-N-(4-(2-methylpyridin-4-yl)benzyl)-6-(naphthalen-2- yl)pyrimidin-4- amine 35
  • EXAMPLE 2 Preparation of 5-fluoro-N-methyl-N-(4-(2-methylpyridin-4-yl)benzyl)- 6- (naphthalen-2-yl)pyrimidin-4-amine (A-27)
  • Method A-Step b 6-((5-fluoro-6-(quinolin-6-yl)pyrimidin-4-ylamino)methyl)-2- n
  • EXAMPLE 5 Preparation of 6-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-5- fluoro-N-((2- (2-methylpyridin-4-yl)pyrimidin-5-yl)methyl)pyrimidin-4-amine (A-61)
  • Method A-Step a 6-chloro-5-fluoro-N-((2-(2-methylpyridin-4-yl)pyrimidin-5- yl)methyl) pyrimidin-4-amine
  • Method A-Step b 6-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-5-fluoro-N-((2- (2-methylpyridin-4-yl)pyrimidin-5-yl)methyl)pyrimidin-4-amine
  • Method E-Step k 4-(4-((5-fluoro-6-(quinolin-6-yl)pyrimidin-4- ylamino)methyl)
  • Method A-Step a 6-chloro-5-fluoro-N-((3-fluoro-2'-methyl-2,4'-bipyridin-5- yl)methyl)pyrimi
  • Method A-Step b 5-fluoro-N-((3-fluoro-2'-methyl-2,4'-bipyridin-5- yl)methyl)-6-(pyridin-3- ylethynyl)pyrimidin-4-amine
  • EXAMPLE 8 Preparation of 5-fluoro-N-((3-fluoro-2'-methyl-2,4'-bipyridin-5- yl)methyl)-6-(1,7- naphthyridin-6-yl)pyrimidin-4-amine (A-85)
  • Method F-Step l N-(tert-butyl)-3-(2-(5-fluoro-6-methoxypyrimidin-4-yl)-2- oxoethyl) picolinamide
  • EXAMPLE 10 Preparation of 6-(6-(4-(2-methylpyridin-4- yl)benzylamino)pyrimidin-4-yl)-2-(methylthio)-7,8-dihydropyrido[4,3-d]pyrimidin-5(6H)- one (A-137)
  • Method A-Step b 6-(6-(4-(2-methylpyridin-4-yl)benzylamino)pyrimidin-4- yl)-2-(methylthio) -7,8-dihydropyrido[4,3-d]pyrimidin-5(6H)-one
  • EXAMPLE 11 Preparation of 2-(methylamino)-6-(6-(4-(2-methylpyridin-4- yl)benzylamino)pyrimidin-4-yl)-7,8-dihydropyrido[4,3-d]pyrimidin-5(6H)-one (A-138)
  • EXAMPLE 12 Preparation of N-(4-(2-methylpyridin-4-yl)benzyl)-4- (naphthalen-2-yl)pyridin-2-amine (A-163)
  • EXAMPLE 13 Preparation of 7-((4-(quinolin-6-yl)pyrimidin-2- ylamino)methyl)quinoline-3- carbonitrile (A-179)
  • EXAMPLE 14 Preparation of 2-((3-fluoro-2'-methyl-2,4'-bipyridin-5- yl)methylamino)-4- (1,5-naphthyridin-2-yl)pyridin-3-ol (A-176) [00179] Method A-Step c: 2-(2,3-difluoropyridin-4-yl)-1,5-naphthyridine
  • EXAMPLE 15 Preparation of 5-((4-(1,7-naphthyridin-6-yl)pyrimidin-2- ylamino)methyl)-2'-methyl-2,4'-bipyridine-3-carbonitrile (A-183)
  • Method F-Step l N-tert-butyl-3-(2-(2-(methylthio)pyrimidin-4-yl)-2- oxoethyl)picolinamide
  • EXAMPLE 16 Preparation of 3-((5-(quinolin-6-yl)-1,2,4-thiadiazol-3- ylamino)methyl)quinoline-7-carbonitrile (A-199) [00197] Preparation of 3-(bromomethyl)quinoline-7-carbonitrile
  • EXAMPLE 17 Preparation of N-((3-methoxy-2'-methyl-2,4'-bipyridin-5- yl)methyl)-5-(1,7-naphthyridin-6-yl)-1,2,4-thiadiazol-3-amine (A-196)
  • Method A-Step d N-((3-methoxy-2'-methyl-2,4'-bipyridin-5-yl)methyl)-5- (1,7-naphthyridin-6-yl) -1,2,4-thiadiazol-3-amine
  • Method A-Step c 3-chloro-5-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-1,2,4- thiadiazole
  • Method A-Step d 5-((5-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-1,2,4- thiadiazol-3-ylamino) methyl)-2'-methyl-2,4'-bipyridine-3-carbonitrile
  • EXAMPLE 19 Preparation of 4-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-3- fluoro-N-((3-fluoro-2'-methyl '-bipyridin-5-yl)methyl)pyridin-2-amine (A-202)
  • Method A-Step d 4-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-3-fluoro-N-((3- fluoro-2'-meth l-2 4'-bi ridin-5- l meth l ridin-2-amine
  • Table 2 shows a selection of compounds prepared according to the methods discussed above in detail and indicated in the Third column of the table:
  • the primary assay is based on Wnt pathway Super-top flash (STF) reporter gene assay:
  • HEK293 STF stable clones (HEK293 cells stably transfected with "Super-Top Flash" TCF-luciferase reporter plasmid) were kept in complete culture medium (DMEM with 4 mM L-Gln, 1.5 g/L sodium bicarbonate and 4.5 g/L glucose containing 6 ⁇ g/mL Blasticidin and 10% FBS).
  • L Wnt3A cells (CRL-2647, ATCC) were kept in DMEM (Gibico) containing 10% FBS (Hyclone).
  • HEK293 STF and L Wnt3A cells were harvested when 90% confluence and cell suspension was mixed with a fixed ratio of 1:1 (HEK293 STF: L Wnt3A).100 ⁇ L/well of mixed cells suspension was added to the 96-well-plate with final cell concentration of 12,000 cells/well and then cultured for an additional 24 hours before adding compounds.
  • luciferase solution (Bright-Glo, Promega) was added to each well during the 48 h incubation. The plates were incubated at room temperature for 5 min under gentle shaking. Luminescence signaling was measured with a plate reader (PHERAstar FS, BMG). The IC 50 (potency) of compounds was calculated based on the inhibition of luminescence signaling.

Abstract

Inhibitors of Wnt signaling pathway with structures of Formula I are disclosed, together with their pharmaceutical salts. Applications of compounds of Formula I in inhibiting or modulating the Wnt signaling pathway are also disclosed. Compounds of Formula I can treat disorders caused by aberrant activation of the Wnt signaling pathway.

Description

WNT SIGNALING PATHWAY INHIBITORS AND THERAPEUTIC APPLICATIONS THEREOF CROSS REFERENCE TO RELATED APPLICATIONS
[0001] This application claims the benefit of Chinese Patent Applications 201510645986.2, filed on October 8, 2015; 201610195733.4, filed on March 31, 2016; 201610195731.5, filed on March 31, 2016; 201610670828.7, filed on August 16, 2016; 201610850360.X, filed on September 26, 2016; 201610850358.2, filed on September 26, 2016; and 201610850357.8, filed on September 26, 2016; all of which are hereby incorporated by reference. FIELD OF INVENTION
[0002] The present invention generally relates to heterocyclic compounds and, more particularly, relates to novel heterocyclic compounds that are useful in therapies targeting the Wnt signaling pathway mediated diseases, such as cancer, in mammals. BACKGROUND OF THE INVENTION
[0003] The Wnt signaling pathway has critical roles in developmental pathways, including regulatory roles in cell proliferation, tissue patterning, and cell fate, migration,
morphogenesis and function, as well as cell survival and degeneration (Logan and Nusse, Annu. Rev. Cell Dev. Biol. (2004) 20:781-810). Recently during research on stem cells, Wnt signaling pathway has been found to regulate the maintenance of epidermal stem cells, intestinal stem cells, hematopoietic stem cells, neural stem cells, embryonic stem cells and tumor stem cells (Reya and Clevers, Nature (2005) 434:843-850).
[0004] The canonical Wnt signaling pathway is activated by Wnt proteins that interact with seven-pass transmembrane receptors of the Frizzled (Fzd) family and single-pass transmembrane co-receptors, such as lipoprotein receptor-related protein 5/6 (LRP5/6). Such interaction activates the Wnt signaling pathway by recruiting and activating the Dishevelled (Dvl) protein, which, in turn, silences glycogen synthase kinase 3β (GSK3β) within a destructive complex formed by adenomatous polyposis coli (APC) protein, GSK3β, Axin, and a priming kinase for β-catenin called casein kinase 1α (CK1α). The destructive complex can phosphorylate β-catenin for its degradation. By inhibiting the destructive complex, cytoplasmic β-catenin can be stabilized and accumulated in the presence of lymphoid enhancing factor/T-cell factor (LEF/TCF) transcription factors so that β-catenin can be
translocated into the nucleus to activate β-catenin mediated gene expressions of dease- causing products, including c-Myc、cyclin-D1、survivin、gastrin、VEGF、ASEF, etc., to increase cell proliferation (Boutros and Mlodzik, Mech. Dev. (1999) 83:27-37; and Perrimon, Cell (1994) 76:781-4).
[0005] Mutations or deregulated expression of components of the Wnt signaling pathway have been linked to the formation and metastasis of numerous tumors. For example, in patients with colon cancer, gene mutations have been observed in regulators of the Wnt cascade, including APC, β-catenin, Axin and TCF, leading to over-expression of genes associated with cell proliferation (Klaus and Birchmeier, Nat. Rev. Cancer (2008) 8:387-98). Aberrant activation of the Wnt signaling pathway is associated with a variety of diseases including various cancers (Hoang et al., Int. J. Cancer (2004) 109:106-111), decrease of neural precursor cells (Chenn and Walsh, Science (2002) 297:365-9), pathogenesis of sporadic medulloblastoma (Dahmen et al., Cancer Res. (2001) 61:7039-43), malignant proliferation of cancer cells due to disruption of Wnt signaling pathway in stem and progenitor cells (Reya and Clevers, Nature (2005) 434:843-850).
[0006] Thus, there is a need for agents and methods that modulate the Wnt signaling pathway, thereby treating, and/or ameliorating Wnt signaling-related disorders. SUMMARY OF THE INVENTION
[0007] In one aspect, the present invention provides compounds of Formula I:
Figure imgf000004_0001
or a pharmaceutically acceptable salt, solvate, stereoisomer or a tautomer thereof, wherein A is A1, A2, A3 or A4;
U is U1, U2, U3 or U4;
L is L1, L2, or L3;
Q is Q1, Q2, Q3 or Q4;
Z is Z1, Z2, Z3 or Z4;
2
Figure imgf000005_0001
wherein X1 to X7 are independently selected from N and C−R13;
Figure imgf000005_0002
wherein X13 and X15 are independently O, N, S or
Figure imgf000005_0003
U1 is , wherein X8 to X10
Figure imgf000005_0004
are independently selected from N and C−R14;
G1 and G2 are independently selected from N and C; 3
V1 and V2 are independently selected from N, O, S and C−R15;
W is V3, V4− V5 or V4 = V5, wherein V3 to V5 are independently selected from N, O, S and C−R16, wherein V4 connects with V1; and
V5 connects with V2;
U2 is C6-C10 aryl, 5-12 membered heteroaryl, 11-13 membered heterocyclophenyl or 10-13 membered heterocycloheteroaryl, wherein heterocyclo and heteroaryl comprises 1 to 4 heteroatoms independently selected from N, O and S; and
C6-C10 aryl, 5-12 membered heteroaryl, 11-13 membered heterocyclophenyl and 10- 13 membered heterocycloheteroaryl are unsubstituted or substituted with 1 to 4 R6a groups;
U3 is−OR14b,−NR14bR15b, C6-C12 aryl unsubstituted or substituted with 1-6 R13b group, 5-14 membered heteroaryl unsubstituted or substituted with 1-6 R13b group, 11-13 membered heterocyclophenyl unsubstituted or substituted with 1-6 R13b group, 10-13 membered heterocycloheteroaryl unsubstituted or substituted with 1-6 R13b group, C2-C8 alkenyl substituted with 5-6 membered aryl or heteroaryl, C2-C8 alkynyl substituted with 5-6 membered aryl or
Figure imgf000006_0001
heteroaryl, or unsubstituted or substituted with 1 to 2 R13b groups, wherein heterocyclo and heteroaryl comprises 1 to 4 heteroatoms independently selected from N, O and S; and
X11 is N or C−R13b;
U4 is
Figure imgf000006_0002
X10 are independently selected from N and C−R15c;
G1 and G2 are independently selected from N and C; 4
V1 and V2 are independently selected from N, O, S and C−R16c;
W is V3, V4− V5 or V4 = V5, wherein V3 to V5 are independently selected from N, O, S and C−R17c, wherein V4 connects with V1; and
V5 connects with V2;
Figure imgf000007_0001
, wherein Y2 is blank,−O−,−S−, −N(R18b)− or−C(R18b)(R19b)−;
L3 is−C(R2c)(R3c)− or−NHCH2CH2−;
Q1 is C6-C10 arylene or 5-12 membered heteroarylene, wherein 5-12 membered heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S; and
C6-C10 aryl and 5-12 membered heteroarylene are unsubstituted or substituted with 1 to 4 R17 groups;
Q2 is C6-C10 arylene or 5-10 membered heteroarylene, wherein 5-10 membered heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S; and
C6-C10 arylene and 5-10 membered heteroarylene are unsubstituted or substituted with 1 to 4 R4a groups;
Q3 is C6-C12 arylene unsubstituted or substituted with 1-6 R6b group, 5-14 membered heteroarylene unsubstituted or substituted with 1-6 R6b group, C3-C6 cycloalkylene unsubstituted or substituted with 1-6 R6b group, C3-C6 heterocylene unsubstituted or
Figure imgf000007_0002
substituted with 1-6 R6b group, or unsubstituted or substituted with 1 to 2 R6b groups, wherein heterocyclene and heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S; and
X12 is N or C−R6b; 5
Q4 is C6-C10 arylene or 5-12 membered heteroarylene, wherein 5-12 membered heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S; and
C6-C10 arylene and 5-12 membered heteroarylene are unsubstituted or substituted with 1 to 4 R5c groups;
Figure imgf000008_0001
Z1 is−CN, C6 aryl, 5-6 membered heteroaryl, or , wherein 5-6 membered heteroaryl comprises 1 to 3 heteroatoms independently selected from N, O and S;
C6 aryl and 5-6 membered heteroaryl are unsubstituted or substituted with 1 to 3 R18 groups;
Y1 is O or NR20; and
q is 0, 1, 2, or 3;
Z2 is H,−CN, halide,−OH, C1-C8 alkyl, C3-C8 cycloalkyl, C2-C8 alkenyl, C2-C8 alkynyl, C1-C8 alkylsulfonyl, C1-C8 acyl, aminoacyl, C1-C8 acylamino, C1-C8 alkylcarbamoylamino, C1-C8 alkoxycarbamoyl, C1-C8 alkylsulfonamido, C1-C8 alkylaminosulphonyl, C1-C8 alkoxy, C2-C8 alkoxyacyl, phenyl, 5-6 membered heteroaryl, or 5-7 membered heterocyclo, wherein 5-6 membered heteroaryl and 5-7 membered heterocyclo comprise one or more hetero atoms independently selected from N, O and S; and
phenyl, 5-6 membered heteroaryl and 5-7 membered heterocycle are unsubstituted or substituted with 1 to 3 R5a groups;
Z3 is H,−CN, halide,−OH, C1-C8 alkyl unsubstituted or substituted with 1 to 3 R12b groups, C3-C8 cycloalkyl, C2-C8 alkenyl, C2-C8 alkynyl, C1-C8 alkylsulfonyl, C1-C8 acyl, aminoacyl, C1-C8 acylamino, C1-C8 alkylcarbamoylamino, C1-C8
alkoxycarbamoyl, C1-C8 alkylsulfonamido, C1-C8 alkylaminosulphonyl, C1-C8 alkoxy, C2-C8 alkoxyacyl,−N(R7b)(R8b) unsubstituted or substituted with 1 to 3 R12b groups, phenyl unsubstituted or substituted with 1 to 3 R9b groups, 5-6 membered heteroaryl unsubstituted or substituted with 1 to 3 R10b groups, or 5-7 membered heterocyclo unsubstituted or substituted with 1 to 3 R11b groups, wherein 5-6 membered heteroaryl 6
and 5-7 membered heterocyclo comprises 1-3 hetero atoms independently selected from N, O and S;
Figure imgf000009_0001
Z4 is−CN, C6 aryl, 5-6 membered heteroaryl, or , wherein 5- 6 membered heteroaryl comprises 1 to 3 heteroatoms independently selected from N, O and S;
C6 aryl and 5-6 membered heteroaryl are unsubstituted or substituted with 1 to 3 R6c groups;
Y3 is O or NR8c; and
q is 0, 1, 2, or 3;
R1 to R3 are independently selected from H and C1-C6 alkyl, wherein C1-C6 alkyl is unsubstituted or substituted with 1 to 3 halide,−CN,−OH, C1-C3 alkyl, C3-C5 cycloalkyl, or C1-C3 alkoxy groups;
R4 is H, halide,−CN,−OH,−NO2, C1-C6 alkyl, C3-C8 cycloalkyl, or C1-C6 alkoxy, wherein C1-C6 alkyl, C3-C8 cycloalkyl and C1-C6 alkoxy are unsubstituted or substituted with 1 to 3 halide;
R5 and R6 are independently selected from H, halide,−CN,−OH, amino, C1-C6 alkyl, C3-C6 cycloalkyl and C1-C6 alkoxy, wherein C1-C6 alkyl, C3-C6 cycloalkyl and C1-C6 alkoxy are unsubstituted or substituted with 1 to 3 halide;
R7 and R8 are independently selected from H and C1-C6 alkyl, or R7 and R8 together are oxo (=O);
R9 to R12 are independently selected from H, C1-C6 alkyl;
R13 is H, halide,−CN,−OH, amino,−NO2, C1-C6 alkyl, C3-C6 cycloalkyl, C1-C6 alkoxy, C1-C6 alkylthio or 1-pyrrolidino, wherein amino, C1-C6 alkyl and C1-C6 alkoxy are unsubstituted or substituted with 1 to 3 halide, C1-C3 alkyl or C3-C6 cycloalkyl groups;
R14 to R17 are independently selected from H, halide,−CN,−OH, amino, C1-C6 alkyl, C3-C6 cycloalkyl, C1-C6 alkoxy and C1-C6 alkylthio, wherein amino, C1-C6 alkyl and C1-C6 alkoxy are unsubstituted or substituted with 1 to 3 halide, C1-C3 alkyl or C3-C6 cycloalkyl groups; 7
R18 is H, halide,−CN,−OH, amino, C1-C6 alkyl, C3-C6 cycloalkyl or C1-C6 alkoxy, wherein amino, C1-C6 alkyl and C1-C6 alkoxy are unsubstituted or substituted with 1 to 3 halide, C1-C3 alkyl or C3-C6 cycloalkyl groups;
R19 and R20 are independently selected from H and C1-C3 alkyl, or R19 and R20 together, with adjacent atoms they attached to, form a cyclic structure;
R4a, R5a and R6a are independently selected from halide,−CN, and−OH, or R4a, R5a and R6a are independently selected from C1-C8 alkyl, C3-C8 cycloalkyl, C1-C8 alkoxy, C2-C8 alkenyl, C2-C8 alkynyl, C1-C8 alkylsulfonyl, C1-C8 acyl, aminoacyl, C1-C8 acylamino, C1-C8 alkylcarbamoylamino, C1-C8 alkoxycarbamoyl, C1-C8
alkylsulfonamido, C1-C8 alkylaminosulphonyl, C2-C8 alkoxyacyl, and 3-8 membered heterocycle, all of which are unsubstituted or substituted with 1-3 halide,−OH,−CN, C1-C3 alkyl, C1-C3 alkoxyl or C3-C8 cycloalkyl groups, wherein 3-8 membered heterocycle comprises one or more hetero atoms from N, O or S;
R2m is H, deuterium, tritium, halide,−OH,−CN, C1-C8 alkyl, C3-C8 cycloalkyl or C1- C8 alkoxy;
R2b and R3b are independently selected from H, C1-C6 alkyl unsubstituted or substituted with 1-3 groups selected from halide,−CN,−OH, C1-C6 alkyl, C3-C5 cycloalkyl and C1-C3 alkoxy;
R4b and R5b are independently selected from H, halide,−CN, amino, C1-C8 alkyl, C3- C8 cycloalkyl, C1-C8 alkoxy, and C1-C3 alkylamino;
R6b is H, halide,−CN or−OH, or R6b is selected from amino, C1-C6 alkyl, C3-C6 cycloalkyl, C1-C6 alkoxy, and C1-C3 alkylamino, all of which are unsubstituted or substituted with 1-3 halide, C1-C3 alkyl, or C3-C6 cycloalkyl groups;
R7b and R8b are independently selected from H, C1-C8 alkyl and C3-C8 cycloalkyl, the latter two of which are unsubstituted or substituted with 1-3 R12b, or R7 and R8 together, with adjacent atoms they attached to, form a cyclic structure;
R9b and R10b are independently selected from H, halide,−CN and−OH, or R9b and R10b are independently selected from amino, C1-C6 alkyl, C3-C6 cycloalkyl, and C1-C6 alkoxy, all of which are unsubstituted or substituted with 1-3 halide, C1-C3 alkyl, or C3-C6 cycloalkyl groups;
R11b is H, halide,−CN,−OH, amino, C1-C6 alkyl unsubstituted or substituted with halide, C3-C6 cycloalkyl, oxo, or C1-C6 alkoxy;
8
R12b is H,−CN,−OH, amino, C1-C6 alkyl unsubstituted or substituted with halide, C3- C6 cycloalkyl, oxo, or C1-C6 alkoxy;
R13b is H, halide,−CN,−OH, amino, C1-C6 alkyl, C3-C6 cycloalkyl, C1-C6 alkoxy, C2- C6 alkylcarbamoylamino, C2-C6 alkoxycarbamoyl, C1-C3 alkylsulphonyl,
−N(R16b)S(O)2−C1-C3 alkyl, or−N(R16b)C(O)−C1-C3 alkyl;
R14b and R15b are independently selected from H, C3-C6 cycloalkyl unsubstituted or substituted with 1 to 3 R20b groups, C1-C6 alkyl unsubstituted or substituted with 1 to 3 R20b groups, 5-6 membered aryl unsubstituted or substituted with 1 to 3 R20b groups, 5-6 membered heteroaryl unsubstituted or substituted with 1 to 3 R20b groups, and 5-6 membered heterocyclo unsubstituted or substituted with 1 to 3 R20b groups, wherein 5-6 membered heteroaryl and 5-7 membered heterocyclo comprise 1 to 3 hetero atoms independently selected from N, O and S, or R14b and R15b together, with adjacent atoms they attached to, form a cyclic structure;
R16b to R 19b are independently selected from H and C1-C6 alkyl unsubstituted or substituted with halide;
R20b is H,−CN,−OH, amino, C1-C6 alkyl, C3-C6 cycloalkyl, C1-C6 alkoxy, 5-6 membered aryl, or 5-6 membered heteroaryl, wherein 5-6 membered heteroaryl comprises 1 to 3 hetero atoms independently selected from N, O and S;
R21b is H or C1-C6 alkyl;
R2c and R3c are independently selected from H and C1-C6 alkyl unsubstituted or substituted with 1-3 halide;
R4c is H, halide, C1-C3 alkyl, C3-C5 cycloalkyl, or C1-C3 alkoxy;
R5c and R6c are independently selected from H, halide,−CN,−OH, amino, C1-C6 alkyl unsubstituted or substituted with 1-3 halide, C3-C5 cycloalkyl, and C1-C6 alkoxy; R7c and R8c are independently selected from H and C1-C6 alkyl, or R7c and R8c together, with adjacent atoms they attached to, form a cyclic structure;
R9c to R14c are independently selected from H, C1-C6 alkyl and−CF3;
R15c to R17c are independently selected from H, halide,−CN,−OH, amino, C1-C6 alkyl unsubstituted or substituted with 1-3 halide, C3-C5 cycloalkyl, and C1-C6 alkoxy.
9
[0010] In one embodiment, the compound of Formula I comprises Q which is
Figure imgf000012_0001
or , wherein Q1 to Q10 are independently N or C−R17.
[0011] In another embodiment, the compound of Formula I comprises A which is
Figure imgf000012_0002
.
[0012] In one embodiment, the compound of Formula I comprises U which is
Figure imgf000012_0003
independently N or C−R15.
[0013] In another embodiment, the compound of Formula I comprises U which is selected from:
10
Figure imgf000013_0001
, unsubstituted or substituted with 1 to 3 R15 groups.
[0014] In one embodiment, the compound of Formula I comprises Q which is selected
Figure imgf000013_0002
, unsubstituted or substituted with 1 to 3 R4a groups.
[0015] In one embodiment, the compound of Formula I comprises Z which is selected from:
11
Figure imgf000014_0001
, unsubstituted or substituted with 1 to 3 R5a groups.
[0016] In another embodiment, the compound of Formula I comprises Q which is selected from:
Figure imgf000014_0002
, unsubstituted or substituted with 1 to 6 R6b groups.
[0017] In one embodiment, the compound of Formula I comprises Z which is selected from:
12
Figure imgf000015_0001
, unsubstituted or substituted with 1-2 R10b groups.
[0018] In another embodiment, the compound of Formula I comprises U which is selected from:
13
Figure imgf000016_0001
, unsubstituted or substituted with 1-6 R13c groups.
[0019] In another embodiment, the compound of Formula I comprises Z which is
HN O S
Figure imgf000016_0002
O , or Z is selected from:
Figure imgf000016_0003
unsubstituted or substituted with 1-3 R6c groups.
14 [0020] In one embodiment, the compound of Formula I comprises A which is selected from:
Figure imgf000017_0001
.
[0021] In another aspect, herein provides a pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 1 and a pharmaceutically acceptable carrier.
[0022] In another aspect, herein provides a method for regulating the Wnt signaling pathway and/or treating a Wnt- mediated disorder in a mammal suffering therefrom. The method comprises administrating to a mammalian subject a therapeutically effective amount of at least one compound of formula I, or a pharmaceutical composition thereof, and optionally in combination with a second therapeutic agent.
[0023] In one embodiment, the method can treat a cell proliferative disorder selected from the group consisting of systemic sclerosis, skin fibrosis, idiopathic pulmonary fibrosis, renal fibrosis, liver fibrosis, drug-induced fibrosis, radiation-induced fibrosis, colorectal cancer, breast cancer, head and neck squamous cell carcinoma, esophageal squamous cell carcinoma, non-small cell lung cancer, gastric cancer, pancreatic cancer, leukemia, lymphoma, neuroblastoma, retinoblastoma, sarcoma, osteosarcoma, chondosarcoma, Ewing's sarcoma, rhabdomysarcoma, brain tumor, Wilms’ tumor, basal cell carcinoma, melanoma, head and neck cancer, cervical cancer and prostate cancer.
[0024] In another aspect, herein provides compounds of formula I, wherein the compounds are the molecules shown in Table 1:
[0025] Table 1: Compounds of Formula I
15
Figure imgf000018_0001
Figure imgf000018_0002
Figure imgf000019_0001
Figure imgf000020_0001
18
Figure imgf000021_0001
19
Figure imgf000022_0001
20
Figure imgf000023_0001
21
Figure imgf000024_0001
22
Figure imgf000025_0001
23
Figure imgf000026_0001
BRIEF DESCRIPTION OF THE DRAWINGS
[0026] FIG.1 depicts the IC50 curve of compound A-12 of the present invention in the primary assay;
[0027] FIG.2 depicts the IC50 curve of compound A-36 of the present invention in the primary assay;
[0028] FIG.3 depicts the IC50 curve of compound A-100 of the present invention in the primary assay;
[0029] FIG.4 depicts the IC50 curve of compound A-103 of the present invention in the primary assay;
[0030] FIG.5 depicts the IC50 curve of compound A-166 of the present invention in the primary assay;
[0031] FIG.6 depicts the IC50 curve of compound A-168 of the present invention in the primary assay;
[0032] FIG.7 depicts the IC50 curve of compound A-194 of the present invention in the primary assay; and
[0033] FIG.8 depicts the IC50 curve of compound A-198 of the present invention in the primary assay.
[0034] Before proceeding with the detailed description, it is to be appreciated that the following detailed description is merely exemplary in nature and is not intended to limit the invention or the application and uses thereof. Hence, although the present disclosure is, for convenience of explanation, depicted and described as shown in certain illustrative embodiments, it will be appreciated that it can be implemented in various other types of embodiments and equivalents, and in various other systems and environments. Furthermore, there is no intention to be bound by any theory presented in the preceding background or the following detailed description. DETAILED DESCRIPTION OF THE INVENTION 24
DEFINITIONS
[0035] Compounds are generally described herein using standard nomenclature. For compounds having asymmetric centers, it should be understood that (unless otherwise specified) all of the optical isomers and mixtures thereof are encompassed. In addition, compounds with carbon-carbon double bonds may occur in Z- and E- forms, with all isomeric forms of the compounds being included in the present invention unless otherwise specified. Where a compound exists in various tautomeric forms, a recited compound is not limited to any one specific tautomer, but rather is intended to encompass all tautomeric forms.
[0036] As used herein, the term "alkyl" refers to a straight or branched chain saturated aliphatic hydrocarbon. Alkyl groups include groups having from 1 to 8 carbon atoms (C1-8 alkyl), from 1 to 6 carbon atoms (C1-6 alkyl) and from 1 to 4 carbon atoms (C1-4 alkyl), including, for example, methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, tert-butyl, pentyl, 2-pentyl, isopentyl, neopentyl, hexyl, 2-hexyl, 3-hexyl and 3-methylpentyl. In some instances, a substituent of an alkyl group is specifically indicated. For example,“cyanoalkyl” refers to an alkyl group substituted with at least one cyano substituent.
[0037] "Alkenyl" refers to straight or branched chain alkene groups, which comprise at least one unsaturated carbon-carbon double bond. Alkenyl groups include C2-8 alkenyl, C2-6 alkenyl and C2-4 alkenyl groups, which have from 2 to 8, 2 to 6 or 2 to 4 carbon atoms, respectively, including, for example, ethenyl, allyl or isopropenyl. "Alkynyl" refers to straight or branched chain alkyne groups, which have one or more unsaturated carbon-carbon bonds, at least one of which is a triple bond. Alkynyl groups include C2-8 alkynyl, C2-6 alkynyl and C2-4 alkynyl groups, which have from 2 to 8, 2 to 6 or 2 to 4 carbon atoms, respectively.
[0038] A "cycloalkyl" is a group that comprises one or more saturated rings in which all ring members are carbon, including, for example, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, adamantyl. Cycloalkyl groups do not comprise an aromatic ring or a heterocyclic ring. Certain cycloalkyl groups are C3-7 cycloalkyl, in which the cycloalkyl group contains a single ring having from 3 to 7 ring members, all of which are carbon. A“cycloalkenyl” is a group that comprises one or more unsaturated rings in which all ring members are carbon.
[0039] "Alkoxy" is meant an alkyl group as described above attached via an oxygen bridge. Alkoxy groups include C1-6 alkoxy and C1-4 groups, which have from 1 to 6 or from 1 to 4 carbon atoms, respectively. Methoxy, ethoxy, propoxy, isopropoxy, n-butoxy, sec-butoxy, tert-butoxy, n-pentoxy, 2-pentoxy, 3-pentoxy, isopentoxy, neopentoxy, hexoxy, 2-hexoxy, 3- hexoxy, and 3-methylpentoxy are representative alkoxy groups.
25
[0040] "Alkylamino" refers to a secondary or tertiary amine that has the general structure -NH-alkyl or -N(alkyl)(alkyl), wherein each alkyl is selected independently from alkyl, cycloalkyl and (cycloalkyl)alkyl groups. Such groups include, for example, mono- and di- (C1-6 alkyl)amino groups, in which each C1-6 alkyl may be the same or different. It will be apparent that the definition of "alkyl" as used in the term "alkylamino" differs from the definition of "alkyl" used for all other alkyl-containing groups, in the inclusion of cycloalkyl and (cycloalkyl)alkyl groups.
[0041] “Halogen” means fluorine, chlorine, bromine, and iodine. A "haloalkyl" is an alkyl group that is substituted with 1 or more independently chosen halogens (e.g., "C1-6 haloalkyl" groups have from 1 to 6 carbon atoms and at least one halogen). Examples of haloalkyl groups include, but are not limited to, mono-, di- or tri-fluoromethyl; mono-, di- or tri- chloromethyl; mono-, di-, tri-, tetra- or penta-fluoroethyl; mono-, di-, tri-, tetra- or penta- chloroethyl; and 1,2,2,2-tetrafluoro-l-trifluoromethyl-ethyl.
[0042] A "heteroaryl" is an aromatic group in which at least one aromatic ring comprises at least one heteroatom selected from N, O and S. Heteroaryls include, for example, 5-12 membered heteroaryls. Examples included but are not limited to imidazole, furan, furazan, isothiazole, isoxazole, oxadiazole, oxazole, pyrazine, pyrazole, pyridazine, pyridine, pyrimidine, tetrazole, thiazole and thiophene.
[0043] The term“heterocyclic” refers to a ring structure containing 3-12 ring atoms, in which at least one ring atom is carbon and at least one ring atom is heteroatom selected from N, O, and S. A heterocyclic group may be aromatic or non-aromatic. Piperidine and oxetane are non-limiting examples of non-aromatic heterocycles. Thiazole and pyridine are non- limiting examples of aromatic heterocycles.
[0044] A“substituent” and“substituted,” as used herein, denote that a molecular moiety is covalently bonded to an atom within a molecule of interest. For example, a ring substituent may be a moiety such as a halogen, alkyl group, haloalkyl group or other group that is covalently bonded to an atom (preferably a carbon or nitrogen atom) that is a ring member. Substituents of aromatic groups are generally covalently bonded to a ring carbon atom.
[0045] The term“pharmaceutically acceptable” when used with reference to a compound of formula I is intended to refer to a form of the compound that is safe for administration to a subject. For example, a free base, a salt form, a solvate, a hydrate, a prodrug or derivative form of a compound of formula I, which has been approved for mammalian use, via oral ingestion or any other route of administration, by a governing authority or regulatory agency, 26
such as the Food and Drug Administration (FDA) of the United States, is pharmaceutically acceptable.
[0046] Included in the compounds of formula I are the pharmaceutically acceptable salt forms of the free-base compounds. The term "pharmaceutically-acceptable salts" embraces salts, commonly used to form alkali metal salts and to form addition salts of free acids or free bases, which have been approved by a regulatory agency. Salts are formed from ionic associations, charge-charge interactions, covalent bonding, complexation, coordination, etc. The nature of the salt is not critical, provided that it is pharmaceutically acceptable.
[0047] In some embodiments, the compound(s) of formula I is used to treat a subject by administering the compound(s) as a pharmaceutical composition. To this end, the compound(s), in one embodiment, is combined with one or more pharmaceutically acceptable excipients, including carriers, diluents or adjuvants, to form a suitable composition, which is described in more detail herein.
[0048] The term“excipient”, as used herein, denotes any pharmaceutically acceptable additive, carrier, adjuvant, or other suitable ingredient, other than the active pharmaceutical ingredient (API), which is typically included for formulation and/or administration purposes. “Diluent” and“adjuvant” are defined hereinafter.
[0049] The terms“treat”, "treating," "treatment," and "therapy" as used herein refer to therapy, including without limitation, curative therapy, prophylactic therapy, and preventative therapy. Prophylactic treatment generally constitutes either preventing the onset of disorders altogether or delaying the onset of a pre-clinically evident stage of disorders in individuals.
[0050] The phrase "effective amount" is intended to quantify the amount of each agent, which will achieve the goal of improvement in disorder severity and the frequency of incidence over treatment of each agent by itself, while avoiding adverse side effects typically associated with alternative therapies. The effective amount, in one embodiment, is administered in a single dosage form or in multiple dosage forms.
[0051] Regardless of the route of administration selected, the compounds of the present invention, which may be used in a suitable hydrated form, and/or the pharmaceutical compositions of the present invention, are formulated into pharmaceutically acceptable dosage forms or by other conventional methods known to those of skill in the art.
[0052] Actual dosage levels of the active ingredients in the pharmaceutical compositions of the present invention may be varied so as to obtain an effective amount of the active ingredient to achieve the desired therapeutic response for a particular patient, composition, and mode of administration, without being toxic to the patient.
27
[0053] The selected dosage level will depend upon a variety of factors including the activity of the particular compound of the present invention employed, the route of administration, the time of administration, the rate of excretion of the particular compound being employed, the duration of the treatment, other drugs, compounds and/or materials used in combination with the particular hedgehog inhibitor employed, the age, sex, weight, condition, general health and prior medical history of the patient being treated, and like factors well known in the medical arts.
[0054] A physician or veterinarian having ordinary skill in the art can readily determine and prescribe the effective amount of the pharmaceutical composition required. For example, the physician or veterinarian could start doses of the compounds of the invention employed in the pharmaceutical composition at levels lower than that required in order to achieve the desired therapeutic effect and gradually increase the dosage until the desired effect is achieved.
[0055] In general, a suitable daily dose of a compound of the invention will be that amount of the compound which is the lowest dose effective to produce a therapeutic effect. Such an effective dose will generally depend upon the factors described above. Generally, intravenous, intracerebroventricular and subcutaneous doses of the compounds of this invention for a patient will range from about 0.0001 to about 100 mg per kilogram of body weight per day. The mode of administration can have a large effect on dosage. Higher doses may be used for localized routes of delivery.
[0056] If desired, the effective daily dose of the active compound may be administered as two, three, four, five, six or more sub-doses administered separately at appropriate intervals throughout the day, optionally, in unit dosage forms. Those of skill in the art will readily appreciate that dose levels can vary as a function of the specific compound, the severity of the symptoms and the susceptibility of the subject to side effects. Dosages for a given compound disclosed herein are readily determinable by those of skill in the art by a variety of means.
PHARMACEUTICAL COMPOSITIONS/FORMULATIONS
[0057] One embodiment provides a pharmaceutical composition comprising a compound of formula I, or a stereoisomer, tautomer, hydrate, solvate or pharmaceutically acceptable salt thereof, and at least one pharmaceutically acceptable excipient.
[0058] In some embodiments, the present invention provides methods for regulating the Wnt signaling pathway and/or treating a Wnt- mediated disorder in a mammal suffering therefrom. The method comprises administrating to a mammalian subject a therapeutically
28
effective amount of at least one compound of formula I, or a pharmaceutical composition thereof, and optionally in combination with a second therapeutic agent. The method comprises treating or preventing disorder is a cell proliferative disorder selected from the group consisting of systemic sclerosis, skin fibrosis, idiopathic pulmonary fibrosis, renal fibrosis, liver fibrosis, drug-induced fibrosis, radiation-induced fibrosis, colorectal cancer, breast cancer, head and neck squamous cell carcinoma, esophageal squamous cell carcinoma, non- small cell lung cancer, gastric cancer, pancreatic cancer, leukemia, lymphoma, neuroblastoma, retinoblastoma, sarcoma, osteosarcoma, chondosarcoma, Ewing's sarcoma, rhabdomysarcoma, brain tumor, WiIm' s tumor, basal cell carcinoma, melanoma, head and neck cancer, cervical cancer and prostate cancer.
[0059] In some embodiments, the compounds described herein are formulated into pharmaceutical compositions. Pharmaceutical compositions are formulated in a conventional manner using one or more pharmaceutically acceptable inactive ingredients that facilitate processing of the active compounds into preparations that can be used pharmaceutically. Proper formulation is dependent upon the route of administration chosen. A summary of pharmaceutical compositions described herein can be found, for example, in Remington: The Science and Practice of Pharmacy, Nineteenth Ed., Easton, Pa.: Mack Publishing Company (1995); Hoover, John E., Remington’s Pharmaceutical Sciences, Mack Publishing Co., Easton, Pennsylvania (1975); Liberman, H.A. and Lachman, L., Eds., Pharmaceutical Dosage Forms, Marcel Decker, New York, N.Y. (1980); and Pharmaceutical Dosage Forms and Drug Delivery Systems, Seventh Ed., Lippincott Williams & Wilkins (1999), herein incorporated by reference for such disclosure.
[0060] A pharmaceutical composition, as used herein, refers to a mixture of a compound of formula I with other chemical components (i.e. pharmaceutically acceptable inactive ingredients), such as carriers, excipients, binders, filling agents, suspending agents, flavoring agents, sweetening agents, disintegrating agents, dispersing agents, surfactants, lubricants, colorants, diluents, solubilizers, moistening agents, plasticizers, stabilizers, penetration enhancers, wetting agents, anti-foaming agents, antioxidants, preservatives, or one or more combination thereof. The pharmaceutical composition facilitates administration of the compound to an organism. In practicing the methods of treatment or use provided herein, therapeutically effective amounts of compounds described herein are administered in a pharmaceutical composition to a mammal having a disease, disorder, or condition to be treated. In some embodiments, the mammal is a human. A therapeutically effective amount can vary widely depending on the severity of the disease, the age and relative health of the
29
subject, the potency of the compound used and other factors. The compounds can be used singly or in combination with one or more therapeutic agents as components of mixtures.
[0061] The pharmaceutical formulations described herein are administered to a subject by appropriate administration routes, including but not limited to, oral, parenteral (e.g., intravenous, subcutaneous, intramuscular), intranasal, buccal, topical, rectal, or transdermal administration routes. The pharmaceutical formulations described herein include, but are not limited to, aqueous liquid dispersions, self-emulsifying dispersions, solid solutions, liposomal dispersions, aerosols, solid dosage forms, powders, immediate release formulations, controlled release formulations, fast melt formulations, tablets, capsules, pills, delayed release formulations, extended release formulations, pulsatile release formulations, multiparticulate formulations, and mixed immediate and controlled release formulations.
[0062] All formulations for oral administration are in dosages suitable for such
administration. Examples of such dosage units are tablets or capsules. In some embodiments, these contain an amount of active ingredient from about 1 to 2000 mg, advantageously from about 1 to 500 mg, and typically from about 5 to 150 mg. A suitable daily dose for a human or other mammal vary widely depending on the condition of the patient and other factors, but, once again, can be determined using routine methods and practices.
[0063] Conventional formulation techniques include, e.g., one or a combination of methods: (1) dry mixing, (2) direct compression, (3) milling, (4) dry or non-aqueous granulation, (5) wet granulation, or (6) fusion. Other methods include, e.g., spray drying, pan coating, melt granulation, granulation, fluidized bed spray drying or coating (e.g., wurster coating), tangential coating, top spraying, tableting, extruding and the like.
SYNTHETIC METHODS
[0064] Methods of the present invention include the use of at least one compound of formula I, which inhibits hedgehog signaling in the regulation of repair and/or functional performance of a wide range of cells, tissues and organs, and have therapeutic and cosmetic applications ranging from regulation of neural tissues, bone and cartilage formation and repair, regulation of spermatogenesis, regulation of smooth muscle, regulation of lung, liver and other organs arising from the primitive gut, regulation of hematopoietic function, regulation of skin and hair growth, etc. Accordingly, the methods and compositions of the present invention include the use of the subject inhibitors for all such uses as inhibitors of hedgehog proteins may be implicated. Moreover, the subject methods can be performed on cells which are provided in culture (in vitro), or on cells in a whole animal (in vivo). 30
[0065] The examples and preparations provided below illustrated and exemplify the compounds described herein and methods of preparing such compounds. In general, the compounds described herein may be prepared by processes known in the general chemical arts.
[0066] The compounds of the present invention can be prepared using various synthetic routes, including those described below, starting from commercially available materials. Starting materials of the invention, are either known, commercially available, or can be synthesized in analogy to or according to methods that are known in the art. Many starting materials may be prepared according to known processes and, in particular, can be prepared using processes described in the examples. In synthesizing starting materials, functional groups in some cases are protected with suitable protecting groups when necessary.
Functional groups may be removed according to known procedures in the art.
[0067] The protection of functional groups by protecting groups, the protecting groups themselves, and their removal reactions (commonly referred to as“deprotection”) are described, for example, in standard reference works, such as J.F.W. McOmie, Protective Groups in Organic Chemistry, Plenum Press, London and New York (1973), in T.W. Greene, Protective Groups in Organic Synthesis, Wiley, New York (1981), in The Peptides, Volume 3, E. Gross and J. Meienhofer editors, Academic Press, London and New York (1981).
[0068] All synthetic procedures described herein can be carried out under known reaction conditions, advantageously under those described herein, either in the absence or in the presence (usually) of solvents or diluents.
[0069] The invention further encompasses“intermediate” compounds, including structures produced from the synthetic procedures described, whether isolated or not, prior to obtaining the finally desired compound. Structures resulting from carrying out steps from a transient starting material, structures resulting from divergence from the described method(s) at any stage, and structures forming starting materials under the reaction conditions are all “intermediates” included in the invention. Further, structures produced by using starting materials in the form of a reactive derivative or salt, or produced by a compound obtainable by means of the process according to the invention and structures resulting from processing the compounds of the invention in situ are also within the scope of the invention.
[0070] New starting materials and/or intermediates, as well as processes for the preparation thereof, are likewise the subject of this invention. In select embodiments, such starting materials are used and reaction conditions so selected as to obtain the desired compound(s).
31 [0071] Starting materials of the invention, are either known, commercially available, or can be synthesized in analogy to or according to methods that are known in the art. Many starting materials may be prepared according to known processes and, in particular, can be prepared using processes described in the examples. In synthesizing starting materials, functional groups in some cases are protected with suitable protecting groups when necessary. Protecting groups, their introduction and removal are described above.
[0072] General Method A:
Figure imgf000034_0001
[0073] Scheme 1 depicts a general synthetic route leading to the synthesis of compounds of Formula I. Compounds of Formula I can be assembled from three components: M1, M2, and M4. Component M1 can be formed from other precursors, as shown in examples vide infra. Component M2 has two leaving groups (LG1 and LG2) which can undergo reactions with an amino group in component M1 and a chemical group (CG1) in component M4 to form compounds of Formula I. LG1 and LG2 can be selected from halide, CH3S(O)2−, triflate, tosylate, and mesylate. CG1 can be selected from borate, organotin, alkyne, amino, and amide groups. Palladium catalyzed reactions of borate, organotin, alkyne, amide, or amino in CG1, or treating amino group in CG1 with a base can form a covalent bond between A and U in M. Further modifications of A or U may be needed to complete the syntheses of compounds of Formula I. Alternatively, LG2 can be converted to borate and CG1 can be selected from Br, I, and triflate so that a palladium catalyzed reaction may form the covalent bond between A and U. Further, M1 may only contains shorter tails, such as Q-L- or L- to start with, and Z or Z-Q may be added later to complete the synthesis of compounds of Formula I. Conditions for steps a and d can be: DIPEA, t-BuOH, 50-60 °C, overnight; DIPEA, i-PrOH, 60-80 °C overnight; Et3N, THF, rt, overnight; DIPEA, cyclohexanol, ZnCl2, 120 °C, 40 h; K2CO3, 32 DMSO, 120-135 °C, 10 h; Pd(AcO)2, BINAP, t-BuONa, dioxane, 100 °C, 12h; and DIPEA, THF, 50 °C, overnight. Conditions for steps b and c can be: DIPEA, NMP, 120-130°C, overnight; DIPEA, THF, reflux, overnight; DIPEA, t-BuOH, 50 °C; NMP, 130 °C, 24 h; Pd(PPh3)4, K2CO3, dioxane/H2O, 100-120 °C, overnight; Cs2CO3, Pd(PPh3)4, dioxane/H2O, 100 °C, 12h; Pd(dppf)Cl2, dppf, K3PO4, dioxane, H2O, 100 °C, 12 h; Pd(dppf)Cl2, dioxane/H2O, 100 °C, 10h; and Pd(PPh3)4, xantphos, Cs2CO3, dioxane, reflux, overnight..
[0074] General Method B:
Figure imgf000035_0001
[0075] Scheme 2 illustrates another general synthetic route leading the synthesis of compounds of Formula I. LG3 can be selected from halide, triflate, tosylate, and mesylate, while CG2 can be a borate group. Alternatively, LG3 can be selected from halide, triflate, tosylate, and mesylate; and CG2 can be a borate group. Palladium catalyzed reaction can lead to the covalent bond formation between A and U in M8. An ensuing reductive amination between M8 and M9 form the covalent bond between L and the amino group on A. Further alkylation of the amino group, if needed, may lead to compounds of Formula I. Step e can be Na2CO3, Pd(PPh3)4, EtOH, toluene, H2O, 90 °C, 12h; and K2CO3, Pd(PPh3)4, dioxane/H2O, 80 °C, 10-12h. Step f can be 1) EtOH, 90 °C, 12 h, 2) NaBH4; and TFA, Et3SiH, MeCN, 80 °C.
[0076]
Figure imgf000035_0002
[007 M h D
Figure imgf000035_0003
[0078] Method E:
33
Figure imgf000036_0001
[0080] Scheme 3 depicts a general synthetic route leading to the synthesis of compounds of Formula I. Compounds of Formula I can be assembled from three components: M1, M10, and M11. Component M10 can be formed from other precursors, as shown in examples vide infra. Component M10 has a ester group (R = Me or Et) which can undergo reaction with the methyl group in component M11 to afford M12. Ring closure of M12 with loss of tert- butylamine afforded M13. The OH group of M13 was converted to hydrogen in two steps to give M14. The CG3 group of M14 was converted to leaving group (LG4) which can undergo reactions with an amino group in component M1 to form compounds of Formula I. CG3 can be selected from CH3S− and CH3O− groups. LG4 can be selected from CH3S(O)2− and HO− groups. Conditions for steps l can be: LDA, THF, -60 °C, 1 h. Conditions for steps m can be: NH4OAc, AcOH, 108 °C, 8 h. Conditions for steps n can be: POCl3, 100 °C, 1 h. Conditions for steps o can be: Pd(PPh3)4, HCOOH, Et3N, DMSO, 100 °C, 1-3 h. Conditions for steps p can be: HBr, H2O, 100 °C, 1 h; and Oxone, THF, H2O, r.t., 10 h. Conditions for steps q can be: PyBOP, DIPEA, DMF, r.t., 12 h; and DIPEA, NMP, 135 °C, 16 h.
[0081] Method G:
Figure imgf000036_0002
34
MATERIALS AND METHODS
[0082] All reagents and solvents were obtained commercially. When required, all reagents and solvents were purified by standard techniques: tetrahydrofuran was purified by distillation from sodium. All thin-layer chromatography (TLC, GF254) analyses and column purification (100-200 mesh) were performed on silica gel (Qingdao Haiyang Chemical Co.Ltd. or Yantai Chemical Co. Ltd.) and spots revealed by UV visualization at 254 nm and I2 vapor or phosphomolybdic acid. All nuclear magnetic resonance spectra were recorded using a Varian unity INOVA 400NB spectrometer at 400 MHz or a Varian Vnmrs spectrometer at 300 MHz as indicated. LC-MS was run using an Agilent 1100 system using an Agela Durashell C183.5 µm 4.6×50 mm column. Gradients were run using 0.1 NH4HCO3 aqueous solution and acetonitrile with gradient 5/95 to 95/5 in the run time indicated (for example, 5 min), flow rate at 1.8 mL/min. SYNTHESIS
[0083] EXAMPLE 1: Preparation of 5-fluoro-N-(4-(2-methylpyridin-4-yl)benzyl)-6- (naphthalen-2-yl)pyrimidin-4-amine (A-1)
[0084] Method A-Step a: 6-chloro-5-fluoro-N-(4-(2-methylpyridin-4-yl)benzyl)pyrimidin-4- amine
Figure imgf000037_0002
[0085] To a solution of (4-(2-methylpyridin-4-yl)phenyl)methanamine (100 mg, 0.51 mmol) in THF (10 mL), was added 4,6-dichloro-5-fluoropyrimidine (101 mg, 0.61 mmol) and N,N- diisopropylethylamine (260 mg, 2.0 mmol), and the reaction mixture was stirred at 50°C overnight. After cooling to room temperature, the mixture was concentrated and the resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 100:1) to give the title compound (140 mg, 84%) as a white solid.1H NMR (400 MHz, CDCl3) δ 8.54 (d, J = 5.2 Hz, 1H), 8.23 (s, 1H), 7.62 (d, J = 8.4 Hz, 2H), 7.45 (d, J = 8.4 Hz, 2H), 7.36 (s, 1H), 7.30 (d, J = 5.2 Hz, 1H), 5.60 (s, 1H), 4.79 (d, J = 6.0 Hz, 2H), 2.62 (s, 3H).
[0086] Method A-Step b: 5-fluoro-N-(4-(2-methylpyridin-4-yl)benzyl)-6-(naphthalen-2- yl)pyrimidin-4- amine 35
Figure imgf000038_0001
[0087] To a solution of 6-chloro-5-fluoro-N-(4-(2-methylpyridin-4-yl)benzyl)pyrimidin-4- amine (66 mg, 0.20 mmol), naphthalen-2-ylboronic acid (52 mg, 0.30 mmol) in dioxane (5 mL) and H2O (1 mL), was added K2CO3 (116 mg, 0.84 mmol) and Pd(PPh3)4 (12 mg, 0.01 mmol). The mixture was stirred at 100 °C overnight under N2 atmosphere. After cooling to room temperature, the mixture was filtered through Celite. The filtrate was diluted with EtOAc (15 mL), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 200:1-50:1) to give the title compound (45 mg, 54%) as a white solid.
[0088] EXAMPLE 2: Preparation of 5-fluoro-N-methyl-N-(4-(2-methylpyridin-4-yl)benzyl)- 6- (naphthalen-2-yl)pyrimidin-4-amine (A-27)
Figure imgf000038_0002
[0089] Method C-Step h: 5-fluoro-N-methyl-N-(4-(2-methylpyridin-4-yl)benzyl)-6- (naphthalen-2-yl) pyrimidin-4-amine
Figure imgf000038_0003
[0090] To a solution of 5-fluoro-N-(4-(2-methylpyridin-4-yl)benzyl)-6-(naphthalen-2- yl)pyrimidin-4- amine (30 mg, 0.07 mmol) in THF (3 mL) at 0°C, was added NaH (6 mg, 80%, 0.20 mmol). The mixture was stirred for 30 min before MeI (20 mg, 0.14 mmol) was added. After stirring for further 6 h, the mixture was concentrated and the resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 100:1) to give the title compound (30 mg, 97%) as a pale yellow oil.
[0091] EXAMPLE 3: Preparation of 6-((5-fluoro-6-(quinolin-6-yl)pyrimidin-4- ylamino)methyl)-2-naphthonitrile (A-42)
Figure imgf000038_0004
[0092] Preparation of 6-(aminomethyl)-2-naphthonitrile
Figure imgf000038_0005
36
[0093] A mixture of 6-cyanonaphthalen-2-yl trifluoromethanesulfonate (1.35 g, 4.49 mmol), K3PO4 (1.27 g, 5.99 mmol), Pd(dba)2 (114 mg, 0.20 mmol), and XPhos (143 mg, 0.30 mmol) in MeNO2 (4 mL) and 1,4-dioxane (25 mL) was heated to 80°C under N2 atmosphere for 18 h. After cooling to room temperature, AcOH (8 mL) was added, followed by Zn power (2.93 g, 45 mmol). The mixture was stirred at 35°C for another 3 h. After filtration, the filtrate was diluted with H2O (30 mL) and washed with EtOAc (20 mL x 2). The aqueous phase was treated with 1 N NaOH to adjust PH = 10, and extracted with EtOAc (50 mL x 3). The combined organic layers was washed with brine, dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 3:1-0:1) to give the title compound (280 mg, 34%) as a yellow solid.
[0094] Method A-Step a: 6-((6-chloro-5-fluoropyrimidin-4-ylamino)methyl)-2-naphthonitrile
Figure imgf000039_0001
[0095] To a solution of 6-(aminomethyl)-2-naphthonitrile (182 mg, 1.0 mmol) in THF (1 mL), was added 4,6-dichloro-5-fluoropyrimidine (167 mg, 1.0 mmol) and N,N- diisopropylethylamine (260 mg, 2.0 mmol), and the reaction mixture was stirred at 50°C overnight. After cooling to room temperature, the mixture was concentrated and the resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 5:1-3:1) to give the title compound (120 mg, 38%) as a pale yellow solid.
[0096] Method A-Step b: 6-((5-fluoro-6-(quinolin-6-yl)pyrimidin-4-ylamino)methyl)-2- n
Figure imgf000039_0002
[0097] To a solution of 6-((6-chloro-5-fluoropyrimidin-4-ylamino)methyl)-2-naphthonitrile (53 mg, 0.17 mmol), 6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)quinoline (66 mg, 0.26 mmol) in dioxane (5 mL) and H2O (1 mL), was added K2CO3 (96 mg, 0.69 mmol) and Pd(PPh3)4 (20 mg, 0.017 mmol). The mixture was stirred at 100 °C overnight under N2 atmosphere. After cooling to room temperature, the mixture was filtered through Celite. The filtrate was diluted with EtOAc (15 mL), dried over Na2SO4, and concentrated. The resulting
37 residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 100:1-50:1) to give the title compound (35 mg, 66%) as a pale yellow solid.
[0098] EXAMPLE 4: Preparation of 6-((5-fluoro-6-(quinolin-6-yl)pyrimidin-4- ylamino)methyl)-2-naphthamide (A-43)
Figure imgf000040_0001
[0099] Method D-Step i: 6-((5-fluoro-6-(quinolin-6-yl)pyrimidin-4-ylamino)methyl)-2- naphthamide
Figure imgf000040_0002
[00100] To a suspension of 6-((5-fluoro-6-(quinolin-6-yl)pyrimidin-4- ylamino)methyl)-2-naphthonitrile (17 mg, 0.04 mmol) and K2CO3 (2.8 mg, 0.02 mmol) in DMSO (1 mL), was added 30% H2O2 (6 mg, 0.05 mmol). The mixture was stirred at room temperature for 3 h, and then poured into H2O (5 mL). The resulting precipitate was filtered, washed with water followed by hexane, and dried in vacuum to give the title compound (14 mg, 83%) as a pale yellow solid.
[00101] EXAMPLE 5: Preparation of 6-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-5- fluoro-N-((2- (2-methylpyridin-4-yl)pyrimidin-5-yl)methyl)pyrimidin-4-amine (A-61)
Figure imgf000040_0003
[00102] Preparation of (2-(2-methylpyridin-4-yl)pyrimidin-5-yl)methanamine
Figure imgf000040_0004
[00103] To a solution of (2-chloropyrimidin-5-yl)methanamine (1.0 g, 7.0 mmol) in dioxane (30 mL) and H2O (6 mL) was added 2-methyl-4-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)pyridine (45%, 3.7 g, 7.7 mmol), K2CO3 (2.9 g, 21 mmol) and Pd(PPh3)4 (809 mg, 0.7 mmol). The mixture was stirred at 100°C under N2 atmosphere for 8 h. After cooling to room temperature, the mixture was filtered through Celite. The filtrate was diluted with H2O (10 mL), and extracted with EtOAc (50 mL x 3). The combined organic layers was washed with brine (15 mL x 3), dried over Na2SO4, and concentrated. The resulting residue
38 was purified by silica gel column chromatography (petroleum ether:EtOAc = 2:1-1:1) to give the title compound (1.3 g, 93%) as a gray solid.
[00104] Method A-Step a: 6-chloro-5-fluoro-N-((2-(2-methylpyridin-4-yl)pyrimidin-5- yl)methyl) pyrimidin-4-amine
Figure imgf000041_0001
[00105] To a solution of (2-(2-methylpyridin-4-yl)pyrimidin-5-yl)methanamine (300 mg, 1.51 mmol) in THF (6 mL) was added 4,6-dichloro-5-fluoropyrimidine (278 mg, 1.51 mmol) and N,N-diisopropylethylamine (580 mg, 4.53 mmol), and the reaction mixture was stirred at 50°C overnight. After cooling to room temperature, the mixture was concentrated and the resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 1:1-0:1) to give the title compound (200 mg, 40%) as a yellow solid.
[00106] Method A-Step b: 6-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-5-fluoro-N-((2- (2-methylpyridin-4-yl)pyrimidin-5-yl)methyl)pyrimidin-4-amine
Figure imgf000041_0002
[00107] A mixture of 6-chloro-5-fluoro-N-((2-(2-methylpyridin-4-yl)pyrimidin-5- yl)methyl)pyrimidin-4-amine (80 mg, 0.24 mmol), 5,6,7,8-tetrahydro-1,6-naphthyridine (129 mg, 0.97 mmol) and N,N-diisopropylethylamine (467 mg, 3.6 mmol) in NMP (2 mL) was stirred at 135°C for 8 h. After cooling to room temperature, the mixture was diluted with H2O (5 mL), and extracted with EtOAc (5 mL x 3). The combined organic layers was washed with brine (5 mL x 3), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 5:1-1:1) to give the title compound (30 mg, 50%) as a brown solid.
[00108] EXAMPLE 6: Preparation of 4-(4-((5-fluoro-6-(quinolin-6-yl)pyrimidin-4- ylamino)methyl)phenyl) -2-methylpyridine 1-oxide (A-64)
Figure imgf000041_0003
[00109] Method E-Step j: 4-(4-((6-chloro-5-fluoropyrimidin-4- ylamino)methyl)phenyl)-2-methylpyridine 1-oxide 39
Figure imgf000042_0001
[00110] To a solution of 6-chloro-5-fluoro-N-(4-(2-methylpyridin-4- yl)benzyl)pyrimidin-4-amine (133 mg, 0.404 mmol) in CH2Cl2 (5 mL) at room temperature, was added m-CPBA (174 mg, 1.01 mmol). The mixture was stirred at room temperature overnight, and then diluted with CH2Cl2 (15 mL). A mixture of sat. Na2S2O3 (5 mL) and sat. NaHCO3 (5 mL) was added, and the mixture was stirred for another 30 min. The organic layer was separated, washed with brine (5 mL), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography
Figure imgf000042_0002
= 100:1- 50:1) to give the title compound (130 mg, 96%) as a white solid.1H NMR (400 MHz, CDCl3) δ 8.25 (d, J = 6.8 Hz, 1H), 8.22 (s, 1H), 7.54 (d, J = 8.0 Hz, 2H), 7.43 (d, J = 8.0 Hz, 3H), 7.35– 7.29 (m, 1H), 5.91 (s, 1H), 4.79 (d, J = 6.0 Hz, 2H), 2.57 (s, 3H).
[00111] Method E-Step k: 4-(4-((5-fluoro-6-(quinolin-6-yl)pyrimidin-4- ylamino)methyl)
Figure imgf000042_0003
[00112] To a solution of 4-(4-((6-chloro-5-fluoropyrimidin-4-ylamino)methyl)phenyl)- 2-methylpyridine 1-oxide (67 mg, 0.19 mmol), 6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2- yl)quinoline (74 mg, 0.29 mmol) in dioxane (5 mL) and H2O (1 mL), was added K2CO3 (107 mg, 0.78 mmol) and Pd(PPh3)4 (22 mg, 0.02 mmol). The mixture was stirred at reflux overnight under N2 atmosphere. After cooling to room temperature, the mixture was filtered through Celite. The filtrate was diluted with EtOAc (15 mL), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 50:1-30:1) to give the title compound (65 mg, 77%) as a white solid.
[00113] EXAMPLE 7: Preparation of 5-fluoro-N-((3-fluoro-2'-methyl-2,4'-bipyridin-5-
Figure imgf000042_0004
[00114] Preparation of (3-fluoro-2'-methyl-2,4'-bipyridin-5-yl)methanamine
40
Figure imgf000043_0001
[00115] To a solution of (6-chloro-5-fluoropyridin-3-yl)methanamine (2.36 g, 14.6 mmol) in dioxane (50 mL) and H2O (10 mL) was added 2-methyl-4-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)pyridine (1.7 g, 16.1 mmol), K2CO3 (8.09 g, 58.6 mmol) and Pd(PPh3)4 (847 mg, 0.73 mmol). The mixture was stirred at 100°C under N2 atmosphere for 8 h. After cooling to room temperature, the mixture was filtered through Celite. The filtrate was diluted with H2O (100 mL), and extracted with CH2Cl2 (100 mL x 6). The combined organic layers was dried over Na2SO4 and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH:NH4OH = 50:1:0.1-20:1:0.1) to give the title compound (2.5 g, 79%) as a brown solid.1H NMR (400 MHz, CDCl3) δ 8.61 (d, J = 4.8 Hz, 1H), 8.50 (s, 1H), 7.77 (s, 1H), 7.69 (d, J = 4.0 Hz, 1H), 7.58 (d, J = 12.0 Hz, 1H), 4.01 (s, 2H), 2.65 (s, 3H).
[00116] Method A-Step a: 6-chloro-5-fluoro-N-((3-fluoro-2'-methyl-2,4'-bipyridin-5- yl)methyl)pyrimi
Figure imgf000043_0002
[00117] To a solution of (3-fluoro-2'-methyl-2,4'-bipyridin-5-yl)methanamine (200 mg, 0.92 mmol) in THF (10 mL), was added 4,6-dichloro-5-fluoropyrimidine (154 mg, 0.92 mmol) and N,N-diisopropylethylamine (357 mg, 2.77 mmol), and the reaction mixture was stirred at 50°C overnight. After cooling to room temperature, the mixture was concentrated and the resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 50:1) to give the title compound (200 mg, 62%) as a gray solid.1HNMR (400 MHz, CDCl3) δ 8.61 (d, J = 4.8 Hz, 1H), 8.56 (s, 1H), 8.24 (s, 1H), 7.76 (s, 1H), 7.69 (s, 1H), 7.55 (d, J = 11.6 Hz, 1H), 5.78 (s, 1H), 4.84 (d, J = 6.0 Hz, 2H), 2.65 (s, 3H).
[00118] Method A-Step b: 5-fluoro-N-((3-fluoro-2'-methyl-2,4'-bipyridin-5- yl)methyl)-6-(pyridin-3- ylethynyl)pyrimidin-4-amine
Figure imgf000043_0003
41 [00119] A mixture of 6-chloro-5-fluoro-N-((3-fluoro-2'-methyl-2,4'-bipyridin-5- yl)methyl)pyrimidin -4-amine (100 mg, 0.29 mmol), 3-ethynylpyridine (92 mg, 0.87 mmol), Pd(PPh3)2Cl2 (9 mg, 0.012 mmol), PPh3 (6.1 mg, 0.023 mmol), and CuI (0.55 mg, 0.023 mmol) in diisopropylanmine (2 mL) and NMP (2 mL) was heated at 100°C under N2 atmosphere for 24 h. After cooling to room temperature, the mixture was filtered through Celite. The filtrate was diluted with H2O (10 mL), and extracted with EtOAc (10 mL x 3). The combined organic layers was washed with brine (5 mL x 2), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 2:1-1:1) to give the title compound (17 mg, 14%) as a white solid.
[00120] EXAMPLE 8: Preparation of 5-fluoro-N-((3-fluoro-2'-methyl-2,4'-bipyridin-5- yl)methyl)-6-(1,7- naphthyridin-6-yl)pyrimidin-4-amine (A-85)
Figure imgf000044_0001
[00121] Preparation of ethyl 5-fluoro-6-hydroxypyrimidine-4-carboxylate
Figure imgf000044_0002
[00122] A solution of sodium (E)-1,4-diethoxy-3-fluoro-1,4-dioxobut-2-en-2-olate (45.6 g, 200 mmol), formamidine acetate (20.8 g, 200 mmol) and EtONa (13.6 g, 200 mmol) in anhydrous EtOH (200 mL) was heated at reflux overnight. After cooling to room temperature, the solvent was removed by vacuum. The residue was neutralized with 2 N HCl and extracted with ethyl acetate (100 mL x 3). The combined organic layers was dried over Na2SO4, and concentrated to give the title compound (22 g, 59%) as a brown solid, which was used directly in the next step without further purification.
[00123] Preparation of ethyl 6-chloro-5-fluoropyrimidine-4-carboxylate
Figure imgf000044_0003
[00124] To a stirred solution of ethyl 5-fluoro-6-hydroxypyrimidine-4-carboxylate (21.0 g, 113 mmol) and DMF (0.5 mL) in CH2Cl2 (200 mL) at room temperature, was added (COCl)2 (43.0 g, 339 mmol) dropwise. The reaction was heated at reflux overnight. After cooling to room temperature, the solvent was removed by vacuum. The residue was dissolved in ethyl acetate (300 mL) and washed with sat. NaHCO3 and brine successively. The organic layer was dried over Na2SO4, and concentrated. The resulting residue was purified by column 42
chromatography (petroleum ether:ethyl acetate = 10 :1) to give the title compound (17.8 g, 77%) as a colerless oil.1H NMR (400 MHz, CDCl3) δ 8.90 (s, 1H), 4.52 (q, J = 7.1 Hz, 2H), 1.44 (t, J = 7.2 Hz, 3H).
[00125] Preparation of ethyl 5-fluoro-6-methoxypyrimidine-4-carboxylate
Figure imgf000045_0001
[00126] A mixture of ethyl 6-chloro-5-fluoropyrimidine-4-carboxylate (6.14 g, 30.0 mmol) and triethylamine (3.03 g, 30.0 mmol) in methanol (50 mL) was stirred at room temperature overnight. After concentration, the residue was purified by column
chromatography (petroleum ether:ethyl acetate = 10 :1) to give the title compound (4.14 g, 74%) as a white solid.1H NMR (400 MHz, CDCl3) δ 8.59 (s, 1H), 4.11 (s, 3H), 4.01 (s, 3H).
[00127] Method F-Step l: N-(tert-butyl)-3-(2-(5-fluoro-6-methoxypyrimidin-4-yl)-2- oxoethyl) picolinamide
Figure imgf000045_0002
[00128] To a stirred solution of N-(tert-butyl)-3-methylpicolinamide (2.69 g, 14 mmol) in anhydrous tetrahydrofuran (50 mL) at -40°C, was added lithium diisopropylamide (2 M in THF, 28 mL, 56 mmol) dropwise. The mixture was stirred at this temperature for 30 min and then cooled to -60°C. Ethyl 5-fluoro-6-methoxypyrimidine-4-carboxylate (2.60 g, 14.0 mmol) in 5 mL anhydrous tetrahydrofuran was added and the reaction mixture was stirred at -60°C for another 1 h. The reaction was quenched with sat. NH4Cl (50 mL) and extracted with ethyl acetate (50 mL x 3). The combined organic layers dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:ethyl acetate = 3:1) to give the title compound (1.36 g, 28%) as a yellow solid.1H NMR (400 MHz, CDCl3) δ 8.61 (s, 1H), 8.48 (d, J = 4.4 Hz, 1H), 8.08 (s, 1H), 7.60 (d, J = 7.6 Hz, 1H), 7.41- 7.37 (m, 1H), 4.86 (s, 2H), 4.13 (s, 3H), 1.40 (s, 9H).
[00129] Method F-Step m: 6-(5-fluoro-6-methoxypyrimidin-4-yl)-1,7-naphthyridin-8- ol
Figure imgf000045_0003
43 [00130] A mixture of N-(tert-butyl)-3-(2-(5-fluoro-6-methoxypyrimidin-4-yl)-2- oxoethyl)picolinamide (1.36 g, 3.93 mmol) and NH4OAc (3.03 g, 39.3 mmol) in HOAc (20 mL) was heated to 108°C for 8 h. After concentration, the resulting residue was dissolved in ethyl acetate (30 mL) and washed with sat. NaHCO3 (5 mL). The organic layer was dried over Na2SO4 and concentrated to give the title compound (880 mg, 82%) as a yellow solid without further purification.
[00131] Method F-Step n: 8-chloro-6-(5-fluoro-6-methoxypyrimidin-4-yl)-1,7- naphthyridine
Figure imgf000046_0001
[00132] A mixture of 6-(5-fluoro-6-methoxypyrimidin-4-yl)-1,7-naphthyridin-8-ol (440 mg, 1.62 mmol) and triethylamine (327 mg, 3.24 mmol) in POCl3 (7.5 mL) and toluene (2.5 mL) was heated to 100°C for 1 h. After concentration, the residue was dissolved in ethyl acetate (20 mL) and washed with sat. NaHCO3 (5 mL). The organic layer was dried over Na2SO4 and concentrated. The resulting residue was purified by column chromatography (petroleum ether:ethyl acetate = 2:1) to give the title compound (440 mg, 100%) as a white solid.1H NMR (400 MHz, CDCl3) δ 9.22 (s, 1H), 8.68 (s, 1H), 8.47 (s, 1H), 8.34 (d, J = 8.2 Hz, 1H), 7.78-7.74( m, 1H), 4.16 (s, 3H).
[00133] Method F- Step o: 6-(5-fluoro-6-methoxypyrimidin-4-yl)-1,7-naphthyridine
Figure imgf000046_0002
[00134] A mixture of 8-chloro-6-(5-fluoro-6-methoxypyrimidin-4-yl)-1,7- naphthyridine (440 mg, 1.62 mmol), triethylamine (924 mg, 9.15 mmol), formic acid (253 mg, 5.50 mmol) and Pd(PPh3)4 (200 mg, 0.173 mmol) in DMSO (10 mL) was stirred at 100°C under N2 atmosphere for 1 h. After cooling to room temperature, the mixture was diluted with ethyl acetate (40 mL) and filtered. The filtrate was washed with brine (10 mL x 3), dried over Na2SO4, and concentrated. The residue was purified by column
chromatography (petroleum ether:ethyl acetate = 3:1) to give the title compound (400 mg, 96%) as a white solid.1H NMR(400 MHz, CDCl3) δ 9.70 (s, 1H), 9.12 (d, J = 3.6 Hz, 1H), 8.70 (s, 1H), 8.52 (s, 1H), 8.30 (d, J = 8.4 Hz, 1H), 7.56-7.53 (m, 1H), 4.16 (s, 3H).
[00135] Method F-Step p: 5-fluoro-6-(1,7-naphthyridin-6-yl)pyrimidin-4-ol 44
Figure imgf000047_0001
[00136] A mixture of 6-(5-fluoro-6-methoxypyrimidin-4-yl)-1,7-naphthyridine (400 mg, 1.56 mmol) in 37% HBr (10 mL) was heated at reflux for 1 h. After concentration, the resulting residue was suspended in isopropanol (10 mL). The precipitate was filtered and washed with ether (3 mL) to give the title compound (400 mg, quantitative) as a yellow solid.
[00137] Method F-Step q: 5-fluoro-N-((3-fluoro-2'-methyl-2,4'-bipyridin-5-yl)methyl)- 6- (1,7-naphthyridin-6-yl)pyrimidin-4-amine
Figure imgf000047_0002
[00138] To a stirred solution of 5-fluoro-6-(1,7-naphthyridin-6-yl)pyrimidin-4-ol (25 mg, 0.1 mmol), (3-fluoro-2'-methyl-2,4'-bipyridin-5-yl)methanamine (22 mg, 0.1 mmol), and N,N-diisopropylethylamine (26 mg, 0.2 mmol) in N,N-Dimethylformamide (1 mL) at room temperature, was added PyBOP (78 mg, 0.15 mmol) in portions. The mixture was stirred at room temperature for 12 h and then diluted with ethyl acetate (5 mL). The organic phase was washed with brine (2 mL), dried over Na2SO4, and concentrated. The residue was purified by column chromatography (CH2Cl2:MeOH = 100:4) to give the title compound (30 mg, 68%) as a white solid.
[00139] EXAMPLE 9: Preparation of 5-((3-fluoro-4-(1,7-naphthyridin-6-yl)pyridin-2- ylamino)methyl) -2'-methyl-2,4'-bipyridine-3-carbonitrile (A-121)
Figure imgf000047_0003
[00140] Preparatio of 2-bromo-5-(bromomethyl)nicotinonitrile
Figure imgf000047_0004
[00141] To a solution of 2-bromo-5-methylnicotinonitrile (5 g, 25.4 mmol) in MeCN (100 mL) was added NBS (6.8 g, 38 mmol) and BPO (100 mg, 0.41 mmol). The mixture was heated at reflux overnight, and then BPO (50 mg, 0.21 mmol) was added. The mixture was heated at reflux for another 12 h. After cooling to room temperature, the mixture was concentrated and purified by column chromatography (petroleum ether:ethyl acetate = 100:1- 50:1) to give the title compound (4.3 g, 61%) as a brown solid. 45
[00142] Preparation of 5-(aminomethyl)-2-bromonicotinonitrile
Figure imgf000048_0001
[00143] To a solution of 2-bromo-5-(bromomethyl)nicotinonitrile (2.3 g, 8.2 mmol) in DMSO (40 mL) in ice bath, was added NaN3 (637 mg, 9.8 mmol). The mixture was stirred at room temperature for 30 min before H2O (100 mL) was added. The mixture was extracted with EtOAc (100 mL x 3). The combined organic layers was washed with brine (50 mL x 3), dried over Na2SO4 and concentrated to give a white solid (940 mg). THF (15 mL) was added followed by PPh3 (1.14 g, 4.34 mmol) and H2O (3 mL) and the mixture was heated at reflux 10 h. After cooling to room temperature, the mixture was diluted with EtOAc (100 mL), and extracted with 0.2 N HCl (20 mL x 2). The combined aqueous layers was washed with EtOAc (20 mL) before sat. Na2CO3 was added to adjust PH = 9. The aqueous layer was extracted with CH2Cl2 (40 mL x 5). The combined organic layers was washed with brine (20 mL), dried over Na2SO4 and concentrated to give a yellow solid (570 mg, 33%).
[00144] Preparation of 5-(aminomethyl)-2-bromonicotinonitrile
Figure imgf000048_0002
[00145] To a solution of (6-chloro-5-fluoropyridin-3-yl)methanamine (570 mg, 2.69 mmol) in dioxane (15 mL) and H2O (3 mL) was added 2-methyl-4-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)pyridine (1.43 g, 45%, 2.96 mmol), K2CO3 (1.12 g, 8.07 mmol) and Pd(PPh3)4 (310 mg, 0.27 mmol). The mixture was stirred at 100°C under N2 atmosphere for 8 h. After cooling to room temperature, the mixture was filtered through Celite. The filtrate was diluted with H2O (10 mL), and extracted with EtOAc (50 mL x 6). The combined organic layers was dried over Na2SO4 and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:ethyl acetate = 2:1-1:1) to give the title compound (570 mg, 95%) as a gray solid.
[00146] Method A-Step c: 6-(2,3-difluoropyridin-4-yl)-1,7-naphthyridine
Figure imgf000048_0003
46 [00147] To a solution of 2,3-difluoropyridin-4-ylboronic acid (105 mg, 0.66 mmol) and 1,7-naphthyridin-6-yl trifluoromethanesulfonate (167 mg, 0.6 mmol) in dioxane (4 mL) and H2O (1 mL), was added Pd(dppf)Cl2 (39 mg, 0.048 mmol), dppf (26 mg, 0.048 mmol) and K3PO4 (254 mg, 1.2 mmol). The mixture was stirred at 100°C under N2 atmosphere for 8 h. After cooling to room temperature, the mixture was concentrated and purified by silica gel column chromatography (petroleum ether:EtOAc = 1:1) to give the title compound (80 mg, 47%) as a white solid.
[00148] Method A-Step d: 5-((3-fluoro-4-(1,7-naphthyridin-6-yl)pyridin-2- ylamino)methyl)-2'-methyl-2,4'-bipyridine-3-carbonitrile
Figure imgf000049_0001
[00149] To a solution of 5-(aminomethyl)-2'-methyl-2,4'-bipyridine-3-carbonitrile (89 mg, 0.4 mmol) and N,N-diisopropylethylamine (206 mg, 1.6 mmol) in NMP (1 mL), was added 6-(2,3-difluoropyridin-4-yl)-1,7-naphthyridine (49 mg, 0.2 mmol). The mixture was stirred at 135°C under N2 atmosphere for 18 h. After cooling to room temperature, the mixture was diluted with H2O (10 mL), and extracted with EtOAc (20 mL x 3). The combined organic layers was washed with brine (10 mL x 3), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 50:1) to give the title compound (42 mg, 48%) as a yellow solid.
[00150] EXAMPLE 10: Preparation of 6-(6-(4-(2-methylpyridin-4- yl)benzylamino)pyrimidin-4-yl)-2-(methylthio)-7,8-dihydropyrido[4,3-d]pyrimidin-5(6H)- one (A-137)
Figure imgf000049_0002
[00151] Method A-Step b: 6-(6-(4-(2-methylpyridin-4-yl)benzylamino)pyrimidin-4- yl)-2-(methylthio) -7,8-dihydropyrido[4,3-d]pyrimidin-5(6H)-one
Figure imgf000049_0003
47
[00152] To a solution of 6-chloro-N-(4-(2-methylpyridin-4-yl)benzyl)pyrimidin-4- amine (400 mg, 1.29 mmol) and 2-(methylthio)-7,8-dihydropyrido[4,3-d]pyrimidin-5(6H)- one (305 mg, 1.55 mmol) in dioxane (10 mL) was added Pd(PPh3)4 (60 mg, 0.05 mmol), Xantphos (60 mg, 0.11 mmol) and Cs2CO3 (1.0 g, 3.23 mmol). The mixture was stirred at reflux overnight. After cooling to room temperature, the mixture was diluted with EtOAc (20 mL), and washed with H2O (6 mL x 3). The organic layer was dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 1:2) to give the title compound (180 mg, 31%) as a white solid.
[00153] EXAMPLE 11: Preparation of 2-(methylamino)-6-(6-(4-(2-methylpyridin-4- yl)benzylamino)pyrimidin-4-yl)-7,8-dihydropyrido[4,3-d]pyrimidin-5(6H)-one (A-138)
Figure imgf000050_0001
[00154] Preparation of 6-(6-(4-(2-methylpyridin-4-yl)benzylamino)pyrimidin-4-yl)-2- (methylthio)-7,8-dihydropyrido[4,3-d]pyrimidin-5(6H)-one
Figure imgf000050_0002
[00155] To a solution of 6-(6-(4-(2-methylpyridin-4-yl)benzylamino)pyrimidin-4-yl)- 2-(methylthio)-7,8- dihydropyrido[4,3-d]pyrimidin-5(6H)-one (50 mg, 0.11 mmol) in THF (3 mL) and H2O (1 mL) was added oxone (69 mg, 0.22 mmol), and the mixture was stirred at room temperature for 4 h. After concentration, the title compound (120 mg, crude) was obtained as a yellow solid, which was used directly in the next step without further purification.
[00156] Preparation of 2-(methylamino)-6-(6-(4-(2-methylpyridin-4- yl)benzylamino)pyrimidin-4-yl) -7,8-dihydropyrido[4,3-d]pyrimidin-5(6H)-one
Figure imgf000050_0003
[00157] A mixture of 6-(6-(4-(2-methylpyridin-4-yl)benzylamino)pyrimidin-4-yl)-2- (methylthio)-7,8- dihydropyrido[4,3-d]pyrimidin-5(6H)-one (50 mg, 0.1 mmol),
methanamine hydrochloride (68 mg, 1.0 mmol), and N,N-diisopropylethylamine (194 mg, 1.5 mmol) in t-BuOH (3 mL) was stirred at 120°C overnight. After cooling to room temperature, the mixture was diluted with EtOAc (40 mL) and washed with H2O (8 mL x 3). The organic layer was dried over Na2SO4 and concentrated. The resulting residue was purified by silica 48
gel column chromatography
Figure imgf000051_0001
= 60:1) to give the title compound (31 mg, 68%) as a white solid.
[00158] EXAMPLE 12: Preparation of N-(4-(2-methylpyridin-4-yl)benzyl)-4- (naphthalen-2-yl)pyridin-2-amine (A-163)
Figure imgf000051_0002
[00159] Method B-Step e: 4-(naphthalen-2-yl)pyridin-2-amine
Figure imgf000051_0003
[00160] To a solution of naphthalen-2-ylboronic acid (206 mg, 1.20 mmol) and 4- chloropyridin-2-amine (128 mg, 1.00 mmol) in dioxane (16 mL) and H2O (4 mL), was added Pd(PPh3)4 (115 mg, 0.10 mmol) and K2CO3 (276 mg, 2.00 mmol). The mixture was stirred at 80°C under N2 atmosphere for 12 h. After cooling to room temperature, the mixture was filtered through Celite. The filtrate was diluted with EtOAc (40 mL), washed with brine (20 mL), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 100:3) to give the title compound (120 mg, 55%) as a yellow solid.
[00161] Method B-Step f: N-(4-bromobenzyl)-4-(naphthalen-2-yl)pyridin-2-amine
Figure imgf000051_0004
[00162] To a solution of 4-(naphthalen-2-yl)pyridin-2-amine (110 mg, 0.50 mmol) and 4-bromobenzaldehyde (95 mg, 0.50 mmol) in MeCN (10 mL), was added trifluoroacetic acid (574 mg, 5.00 mmol) and triethylsilane (580 mg, 5.00 mmol). The mixture was stirred at 80°C for 12 h. After cooling to room temperature, the mixture was diluted with EtOAc (40 mL), washed with sat. NaHCO3 (10 mL x 3), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 5:1) to give the title compound (80 mg, 41%) as a yellow solid.
[00163] Method B-Step g: N-(4-(2-methylpyridin-4-yl)benzyl)-4-(naphthalen-2- yl)pyridin-2-amine
49
Figure imgf000052_0001
[00164] To a solution of N-(4-bromobenzyl)-4-(naphthalen-2-yl)pyridin-2-amine (130 mg, 0.33 mmol) and 2-methyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine (27%, 406 mg, 0.50 mmol) in dioxane (20 mL), was added 1M aqueous Na2CO3 (1 mL) and Pd(dppf)Cl2 (28 mg, 0.034 mmol). The mixture was stirred at 100°C under N2 atmosphere for 12 h. After cooling to room temperature, the mixture was filtered through Celite. The filtrate was diluted with EtOAc (40 mL), washed with brine (10 mL x 3), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 100:3) to give the title compound (50 mg, 37%) as a yellow solid.
[00165] EXAMPLE 13: Preparation of 7-((4-(quinolin-6-yl)pyrimidin-2- ylamino)methyl)quinoline-3- carbonitrile (A-179)
Figure imgf000052_0002
[00166] Preparation of 7-(bromomethyl)quinoline-3-carbonitrile
Figure imgf000052_0003
[00167] To a solution of 7-methylquinoline-3-carbonitrile (1.5 g, 8.9 mmol) in MeCN (50 mL) was added NBS (2.1 g, 11.8 mmol) and BPO (216 mg, 0.9 mmol). The mixture was heated at reflux overnight. After cooling to room temperature, H2O (100 mL) and EtOAc (100 mL) was added. The aqueous layer was extracted with EtOAc (40 mL x 3). The combined organic layers was dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:petroleum ether = 3:2) to give the title compound (743 g, 34%) as a white solid.
[00168] Preparation of 7-(azidomethyl)quinoline-3-carbonitrile
Figure imgf000052_0004
[00169] To a solution of 7-(bromomethyl)quinoline-3-carbonitrile (743 mg, 3 mmol) in DMSO (15 mL), was added NaN3 (293 mg, 4.5 mmol). The mixture was stirred at 50°C for 1 h. After cooling to room temperature, H2O (75 mL) and EtOAc (75 mL) was added. The organic layer was dried over Na2SO4, and concentrated. The resulting residue was purified by 50
silica gel column chromatography (petroleum ether:EtOAc = 10:1-5:1) to give the title compound (392 mg, 62%) as a white solid.
[00170] Preparation of 7-(aminomethyl)quinoline-3-carbonitrile
Figure imgf000053_0001
[00171] To a solution of 7-(azidomethyl)quinoline-3-carbonitrile (392 mg, 1.87 mmol) in THF (10 mL) was added PPh3 (541 mg, 2.1 mmol). The mixture was heated at reflux for 5 min before H2O (1 mL) was added. The mixture was heated at reflux for another 1 h. After cooling to room temperature, the mixture was diluted with EtOAc (100 mL), and extracted with 1 N HCl (100 mL). To the aqueous layer was added NH4OH to adjust PH = 8. The mixture was extracted with EtOAc (100 mL). The organic layer was dried over Na2SO4 and concentrated to give the title compound (340 mg, 99%) as a pale yellow solid.
[00172] Method A-Step c: 6-(2-(methylthio)pyrimidin-4-yl)quinoline
Figure imgf000053_0002
[00173] To a solution of 4-chloro-2-(methylthio)pyrimidine (1.6 g, 10 mmol) and 6- (4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)quinoline (3.06 g, 12 mmol) in dioxane (50 mL) and H2O (12.5 mL), was added Pd(dppf)Cl2 (653 mg, 0.80 mmol), dppf (443 mg, 0.80 mmol) and K3PO4 (4.24 g, 20 mmol). The mixture was stirred at 100°C under N2 atmosphere for 12 h. After cooling to room temperature, the mixture was concentrated and purified by silica gel column chromatography (CH2Cl2:MeOH = 25:1) to give the title compound (2.0 g, 80%) as a yellow solid.
[00174] Prep line
Figure imgf000053_0003
[00175] To a solution of 6-(2-(methylthio)pyrimidin-4-yl)quinoline (1.24 g, 4.9 mmol) in CH2Cl2 (50 mL) was added m-CPBA (1.79 g, 85%, 8.82 mmol). The mixture was stirred at room temperature for 2 h and sat. Na2S2O3 (15 mL) and sat. NaHCO3 (15 mL) was added to quench the reaction. The mixture was extacted with CH2Cl2 (100 mL x 3), dried over Na2SO4, and concentrated to give the title compound (1.1 g, 78%) as a yellow solid.
[00176] Method A-Step d: N-((3-fluoro-2'-methyl-2,4'-bipyridin-5-yl)methyl)-4- (quinolin-6-yl)pyrimidin -2-amine
51
Figure imgf000054_0001
[00177] To a solution of 7-(aminomethyl)quinoline-3-carbonitrile (39 mg, 0.21 mmol) in NMP (1.5 mL) was added 6-(2-(methylsulfonyl)pyrimidin-4-yl)quinoline (50 mg, 0.18 mmol) and N,N-diisopropylethylamine (190 mg, 1.4 mmol). The mixture was stirred at 130°C overnight. After cooling to room temperature, the mixture was diluted with H2O (50 mL) and EtOAc (50 mL). The aqueous layer was separated and extracted with EtOAc (30 mL x 3). The combined organic layers was dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 100:1-20:1) to give the title compound (25 mg, 36%) as a yellow solid.
[00178] EXAMPLE 14: Preparation of 2-((3-fluoro-2'-methyl-2,4'-bipyridin-5- yl)methylamino)-4- (1,5-naphthyridin-2-yl)pyridin-3-ol (A-176)
Figure imgf000054_0002
[00179] Method A-Step c: 2-(2,3-difluoropyridin-4-yl)-1,5-naphthyridine
Figure imgf000054_0003
[00180] To a solution of 2,3-difluoropyridin-4-ylboronic acid (175 mg, 1.1 mmol) and 2-chloro-1,5-naphthyridine (164 mg, 1.0 mmol) in dioxane (4 mL) and H2O (1 mL), was added Pd(dppf)Cl2 (65 mg, 0.08 mmol), dppf (44 mg, 0.08 mmol) and K3PO4 (424 mg, 2.0 mmol). The mixture was stirred at 100°C under N2 atmosphere for 12 h. After cooling to room temperature, the mixture was concentrated and purified by silica gel column chromatography (petroleum ether:EtOAc = 1:1) to give the title compound (130 mg, 53%) as a white solid.
[00181] Method G-Step r: 2-((3-fluoro-2'-methyl-2,4'-bipyridin-5-yl)methylamino)-4- (1,5-naphthyridin -2-yl)pyridin-3-ol
Figure imgf000054_0004
52 [00182] To a solution of 2-(2,3-difluoropyridin-4-yl)-1,5-naphthyridine (70 mg, 0.29 mmol) in DMSO (2 mL) was added (3-fluoro-2'-methyl-2,4'-bipyridin-5-yl)methanamine (93 mg, 0.43 mmol) and K2CO3 (80 mg, 0.58 mmol). The mixture was stirred at 135°C for 18 h. After cooling to room temperature, the mixture was diluted with H2O (30 mL), and extracted with EtOAc (30 mL x 3). The combined organic layers was washed with brine (30 mL x 3), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography
Figure imgf000055_0001
= 30:1) to give the title compound (10 mg, 8%) as a yellow solid.
[00183] EXAMPLE 15: Preparation of 5-((4-(1,7-naphthyridin-6-yl)pyrimidin-2- ylamino)methyl)-2'-methyl-2,4'-bipyridine-3-carbonitrile (A-183)
Figure imgf000055_0002
[00184] Method F-Step l: N-tert-butyl-3-(2-(2-(methylthio)pyrimidin-4-yl)-2- oxoethyl)picolinamide
Figure imgf000055_0003
[00185] To a stirred solution of N-(tert-butyl)-3-methylpicolinamide (2.0 g, 10 mmol) in anhydrous tetrahydrofuran (100 mL) at -40°C, was added lithium diisopropylamide (2 M in THF, 12.5 mL, 25 mmol) dropwise. The mixture was stirred at this temperature for 30 min and then cooled to -60°C. Ethyl 2-(methylthio)pyrimidine-4-carboxylate (2.0 g, 10 mmol) in anhydrous THF (10 mL) was added and the reaction mixture was stirred at -60°C for another 1 h. The reaction was quenched with sat. NH4Cl (50 mL) and extracted with ethyl acetate (80 mL x 3). The combined organic layers dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:ethyl acetate = 5:1) to give the title compound (1.2 g, 35%) as a yellow solid.
[00186] Method F-Step m: 6-(2-(methylthio)pyrimidin-4-yl)-1,7-naphthyridin-8-ol
Figure imgf000055_0004
[00187] A mixture of N-tert-butyl-3-(2-(2-(methylthio)pyrimidin-4-yl)-2- oxoethyl)picolinamide (500 mg, 1.45 mmol) and NH4OAc (1.11 g, 14.5 mmol) in HOAc (10 mL) was heated to 108°C for 8 h. After concentration, the resulting residue was dissolved in
53
ethyl acetate (30 mL) and washed with sat. NaHCO3 (5 mL). The organic layer was dried over Na2SO4 and concentrated to give the title compound (350 mg, 89%) as a yellow solid without further purification.
[00188] Method F-Step n: 8-chloro-6-(2-(methylthio)pyrimidin-4-yl)-1,7- naphthyridine
Figure imgf000056_0001
[00189] A solution of 6-(2-(methylthio)pyrimidin-4-yl)-1,7-naphthyridin-8-ol (350 mg, 1.3 mmol) in POCl3 (6 mL) was heated to 100°C for 1 h. After concentration, the residue was dissolved in ethyl acetate (20 mL) and washed with sat. NaHCO3 (5 mL). The organic layer was dried over Na2SO4 and concentrated. The resulting residue was purified by column chromatography (petroleum ether:ethyl acetate = 5:1) to give the title compound (350 mg, 93%) as a pale yellow solid.
[00190] Method F-Step o: 6-(2-(methylthio)pyrimidin-4-yl)-1,7-naphthyridine
Figure imgf000056_0002
[00191] A mixture of 8-chloro-6-(2-(methylthio)pyrimidin-4-yl)-1,7-naphthyridine (350 mg, 1.2 mmol), triethylamine (924 mg, 9.15 mmol), formic acid (253 mg, 5.50 mmol) and Pd(PPh3)4 (138 mg, 0.12 mmol) in DMSO (5 mL) was stirred at 100°C under N2 atmosphere for 3 h. After cooling to room temperature, the mixture was diluted with ethyl acetate (40 mL) and filtered. The filtrate was washed with brine (10 mL x 3), dried over Na2SO4, and concentrated. The residue was purified by column chromatography (petroleum ether:ethyl acetate = 5:1) to give the title compound (180 mg, 59%) as a pale yellow solid.
[00192] Method F-Step p: 6-(2-(methylsulfonyl)pyrimidin-4-yl)-1,7-naphthyridine
Figure imgf000056_0003
[00193] To a solution of 6-(2-(methylthio)pyrimidin-4-yl)-1,7-naphthyridine (180 mg, 0.71 mmol) in THF (5 mL) and H2O (0.5 mL) was added oxone (497 mg, 1.56 mmol), and the mixture was stirred at room temperature for 10 h. After concentration, the title compound (680 mg, crude) was obtained as a yellow solid, which was used directly in the next step without further purification. 54 [00194] Method F-Step q: 5-((4-(1,7-naphthyridin-6-yl)pyrimidin-2-ylamino)methyl)- 2'-methyl-2,4'- bipyridine-3-carbonitrile
Figure imgf000057_0001
[00195] To a solution of 5-(aminomethyl)-2'-methyl-2,4'-bipyridine-3-carbonitrile (68 mg, 0.3 mmol) and N,N-diisopropylethylamine (194 mg, 1.5 mmol) in NMP (1 mL), was added 6-(2-(methylsulfonyl)pyrimidin-4-yl)-1,7-naphthyridine (140 mg, 30%, 0.15 mmol). The mixture was stirred at 135°C under N2 atmosphere for 16 h. After cooling to room temperature, the mixture was diluted with H2O (10 mL), and extracted with EtOAc (20 mL x 3). The combined organic layers was washed with brine (10 mL x 3), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 50:1) to give the title compound (12 mg, 19%) as a pale yellow solid.
[00196] EXAMPLE 16: Preparation of 3-((5-(quinolin-6-yl)-1,2,4-thiadiazol-3- ylamino)methyl)quinoline-7-carbonitrile (A-199)
Figure imgf000057_0002
[00197] Preparation of 3-(bromomethyl)quinoline-7-carbonitrile
Figure imgf000057_0003
[00198] To a solution of 3-methylquinoline-7-carbonitrile (1.5 g, 8.9 mmol) in MeCN (80 mL) was added NBS (1.9 g, 10.7 mmol) and BPO (216 mg, 0.9 mmol). The mixture was heated at reflux overnight. After cooling to room temperature, H2O (100 mL) and EtOAc (100 mL) was added. The aqueous layer was extracted with EtOAc (40 mL x 3). The combined organic layers was dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:petroleum ether = 8:1) to give the title compound (1.0 g, 45%) as a pale yellow solid.
[00199] Preparation of 3-(azidomethyl)quinoline-7-carbonitrile
Figure imgf000057_0004
[00200] To a solution of 3-(bromomethyl)quinoline-7-carbonitrile (1 g, 4.1 mmol) in DMSO (20 mL), was added NaN3 (395 mg, 6.2 mmol). The mixture was stirred at 50°C for 1 h. After cooling to room temperature, H2O (100 mL) and EtOAc (100 mL) was added. The 55 aqueous layer was extracted with EtOAc (40 mL x 3). The combined organic layers was dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 10:1-5:1) to give the title compound (800 mg, 93%) as a yellow solid.
[00201] Preparation of 3-(aminomethyl)quinoline-7-carbonitrile
Figure imgf000058_0001
[00202] To a solution of 3-(azidomethyl)quinoline-7-carbonitrile (800 mg, 3.8 mmol) in THF (20 mL) was added PPh3 (1.1 g, 4.2 mmol). The mixture was heated at reflux for 5 min before H2O (2 mL) was added. The mixture was heated at reflux for another 1 h. After cooling to room temperature, the mixture was diluted with EtOAc (100 mL), and extracted with 1 N HCl (100 mL). To the aqueous layer was added NH4OH to adjust PH = 8. The mixture was extracted with EtOAc (30 mL x 3). The combined organic layers was washed with brine (30 mL x 3), dried over Na2SO4 and concentrated to give the title compound (400 mg, 56%) as a pale yellow solid.
[00203] Method A-Step c: 3-chloro-5-(quinolin-6-yl)-1,2,4-thiadiazole
Figure imgf000058_0002
[00204] To a solution of 6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)quinoline (280 mg, 1.1 mmol) and 3,5-dichloro-1,2,4-thiadiazole (155 mg, 1.0 mmol) in dioxane (6 mL) and H2O (1.5 mL), was added Pd(dppf)Cl2 (65 mg, 0.08 mmol), dppf (44 mg, 0.08 mmol) and K3PO4 (420 mg, 2.0 mmol). The mixture was stirred at 100°C under N2 atmosphere for 12 h. After cooling to room temperature, the mixture was concentrated and purified by silica gel column chromatography (petroleum ether:EtOAc = 3:1) to give the title compound (200 mg, 81%) as a gray solid.1H NMR (400 MHz, CDCl3) δ 9.03 (d, J = 3.2 Hz, 1H), 8.53 (s, 1H), 8.29 (d, J = 8.0 Hz, 1H), 8.24 (d, J = 8.8 Hz, 1H), 8.18 (d, J = 8.8 Hz, 1H), 7.53 (dd, J = 8.0, 4.0 Hz, 1H).
[00205] Method A-Step d: 3-((5-(quinolin-6-yl)-1,2,4-thiadiazol-3- ylamino)methyl)quinoline-7-carbonitrile
Figure imgf000058_0003
56
[00206] To a solution of 3-(aminomethyl)quinoline-7-carbonitrile (59 mg, 0.32 mmol) in NMP (1.5 mL) was added 3-chloro-5-(quinolin-6-yl)-1,2,4-thiadiazole (40 mg, 0.16 mmol) and N,N-diisopropylethylamine (165 mg, 1.28 mmol). The mixture was stirred at 135°C for 40 h. After cooling to room temperature, the mixture was diluted with H2O (30 mL), and extracted with EtOAc (30 mL x 3). The combined organic layers was washed with brine (30 mL x 3), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 30:1) to give the title compound (12 mg, 19%) as an orange solid.
[00207] EXAMPLE 17: Preparation of N-((3-methoxy-2'-methyl-2,4'-bipyridin-5- yl)methyl)-5-(1,7-naphthyridin-6-yl)-1,2,4-thiadiazol-3-amine (A-196)
Figure imgf000059_0001
[00208] Preparation of (6-iodo-5-methoxypyridin-3-yl)methanol
Figure imgf000059_0002
[00209] To a suspension of NaBH4 (1.65 g, 43.3 mmol) in EtOH (100 mL) at 0°C was added a solution of methyl 6-iodo-5-methoxynicotinate (2.54 g, 8.67 mmol) in EtOH (30 mL) dropwise. The mxiture was stirred at room temperature for 20 h. After concentration, H2O (100 mL) was added and the mixture was extracted with CH2Cl2 (100 mL x 3). The combined organic layers was dried over Na2SO4, and concentrated to give the title compound (2.0 g, 87%) as a colorless oil.1HNMR (400 MHz, CDCl3) δ 8.18 (d, J = 2.0 Hz, 1H), 8.13 (s, 1H), 7.94 (s, 1H), 7.09 (s, 1H), 4.71 (s, 2H), 3.92 (s, 3H).
[00210] Preparation of 5-(azidomethyl)-2-iodo-3-methoxypyridine
Figure imgf000059_0003
[00211] To a solution of (6-iodo-5-methoxypyridin-3-yl)methanol (2.0 g, 7.55 mmol) and Et3N (3.05 g, 30.2 mmol), was added MsCl (1.72 g, 15.1 mmol). The mixture was stirred at room temperature overnight and then washed with brine (50 mL x 2). The combined organic layers was dried over Na2SO4, and concentrated. The resulting residue was dissolved in DMSO (40 mL), and NaN3 (873 mg, 13.4 mmol) was added. After stirring at room temperature for 8 h, H2O (50 mL) was added and the mixture was extracted with EtOAc (50 mL x 3). The combined organic layers was washed with brine (100 mL x 3), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column
57 chromatography (petroleum ether:EtOAc = 10:1) to give the title compound (1.35 g, 61%) as a yellow oil.1H NMR (400 MHz, CDCl3) δ 7.96 (d, J = 1.6 Hz, 1H), 6.96 (d, J = 1.6 Hz, 1H), 4.38 (s, 2H), 3.94 (s, 3H).
[00212] Preparation of (6-iodo-5-methoxypyridin-3-yl)methanamine
Figure imgf000060_0001
[00213] To a solution of 5-(azidomethyl)-2-iodo-3-methoxypyridine (1.35 g, 4.66 mmol) in THF (20 mL) was added PPh3 (1.14 g, 4.34 mmol). The mixture was heated at reflux and H2O (3 mL) was added. The mixture was heated at reflux for 8 h. After cooling to room temperature, the mixture was diluted with EtOAc (40 mL), and extracted with 0.2 N HCl (50 mL). The aqueous layer was washed with EtOAc (50 mL) before NaOH was added to adjust PH = 10. The aqueous layer was extracted with CH2Cl2 (50 mL x 6). The combined organic layers was dried over Na2SO4 and concentrated to give the title compound (1.18 g, 96%) as a yellow solid.1H NMR (400 MHz, CDCl3) δ 7.95 (s, 1H), 7.07 (s, 1H), 3.92 (s, 3H), 3.89 (s, 2H).
[00214] Preparation of (3-methoxy-2'-methyl-2,4'-bipyridin-5-yl)methanamine
Figure imgf000060_0002
[00215] To a solution of (6-iodo-5-methoxypyridin-3-yl)methanamine (1.12 g, 4.24 mmol) in dioxane (20 mL) and H2O (4 mL) was added 2-methyl-4-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)pyridine (1.51 g, 50%, 5.52 mmol), K2CO3 (2.34 g, 17.0 mmol) and Pd(PPh3)4 (245 mg, 0.21 mmol). The mixture was stirred at reflux under N2 atmosphere overnight. After cooling to room temperature, the mixture was filtered through Celite. The filtrate was diluted with EtOAc (100 mL). The organic layer was separated, dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 100:1-50:1) to give the title compound (730 mg, 75%) as a brown oil.1H NMR (400 MHz, CDCl3) δ 8.55 (d, J = 5.2 Hz, 1H), 8.27 (s, 1H), 7.71 (s, 1H), 7.67 (d, J = 5.2 Hz, 1H), 7.38 (s, 1H), 3.99 (s, 2H), 3.93 (s, 3H), 2.62 (s, 3H).
[00216] Preparation of 6-(trimethylstannyl)-1,7-naphthyridine
Figure imgf000060_0003
58
[00217] A mixture of 1,7-naphthyridin-6-yl trifluoromethanesulfonate (1.3 g, 4.76 mmol), 1,1,1,2,2,2-hexamethyldistannane (2.3 g, 7.0 mmol), LiCl (590 mg, 14.0 mmol), and Pd(PPh3)4 (270 mg, 0.23 mmol) in dioxane (20 mL) was heated at reflux under N2 atmosphere for 3 h. After cooling to room temperature, the mixture was concentrated. The residue was dissolved in EtOAc (30 mL) and washed with brine (30 mL). The organic layer was dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 10:1) to give the title compound (600 mg, 43%) as an colorless oil.
[00218] Method A-Step c: 3-chloro-5-(1,7-naphthyridin-6-yl)-1,2,4-thiadiazole
Figure imgf000061_0001
[00219] To a solution of 6-(trimethylstannyl)-1,7-naphthyridine (29 mg, 0.1 mmol) and 3,5-dichloro-1,2,4-thiadiazole (21 mg, 0.17 mmol) in toluene (1 mL) was added
Pd(PPh3)4 (12 mg, 0.01 mmol) and CuI (2 mg, 0.01 mmol). The mixture was stirred at 110°C under N2 atmosphere overnight. After cooling to room temperature, the mixture was concentrated and purified by silica gel column chromatography (CH2Cl2:MeOH = 80:1) to give the title compound (17 mg, 70%) as a white solid.1H NMR (400 MHz, CDCl3) δ 9.52 (s, 1H), 9.14 (d, J = 3.6 Hz, 1H), 8.60 (s, 1H), 8.33 (d, J = 8.4 Hz, 1H), 7.73 (dd, J = 8.0, 4.0 Hz, 1H).
[00220] Method A-Step d: N-((3-methoxy-2'-methyl-2,4'-bipyridin-5-yl)methyl)-5- (1,7-naphthyridin-6-yl) -1,2,4-thiadiazol-3-amine
Figure imgf000061_0002
[00221] To a solution of (3-methoxy-2'-methyl-2,4'-bipyridin-5-yl)methanamine (37 mg, 0.16 mmol) in NMP (1.5 mL) was added 3-chloro-5-(1,7-naphthyridin-6-yl)-1,2,4- thiadiazole (20 mg, 0.08 mmol) and N,N-diisopropylethylamine (83 mg, 0.64 mmol). The mixture was stirred at 135°C for 40 h. After cooling to room temperature, the mixture was diluted with H2O (30 mL), and extracted with EtOAc (30 mL x 3). The combined organic layers was washed with brine (30 mL x 3), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (CH2Cl2:MeOH = 30:1) to give the title compound (8 mg, 23%) as a pale yellow solid. 59 [00222] EXAMPLE 18: Preparation of 5-((5-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)- 1,2,4-thiadiazol-3- ylamino)methyl)-2'-methyl-2,4'-bipyridine-3-carbonitrile (A-198)
Figure imgf000062_0001
[00223] Method A-Step c: 3-chloro-5-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-1,2,4- thiadiazole
Figure imgf000062_0002
[00224] To a solution of 3,5-dichloro-1,2,4-thiadiazole (155 mg, 1.0 mmol) in i-PrOH (10 mL) was added 5,6,7,8-tetrahydro-1,6-naphthyridine (134 mg, 1.0 mmol) and N,N- diisopropylethylamine (645 mg, 5.0 mmol), and the mixture was stirred at room temperature overnight. The mixture was diluted with H2O (30 mL), and extracted with EtOAc (30 mL x 3). The combined organic layers was washed with brine (30 mL x 3), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 2:1) to give the title compound (180 mg, 71%) as a gray solid.
[00225] Method A-Step d: 5-((5-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-1,2,4- thiadiazol-3-ylamino) methyl)-2'-methyl-2,4'-bipyridine-3-carbonitrile
Figure imgf000062_0003
[00226] To a solution of 5-(aminomethyl)-2'-methyl-2,4'-bipyridine-3-carbonitrile (185 mg, 0.83 mmol) and N,N-diisopropylethylamine (213 mg, 1.65 mmol) in cyclohexanol (3 mL) in sealed tube was added 3-chloro-5-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-1,2,4- thiadiazole (140 mg, 0.55 mmol) and ZnCl2 (83 mg, 0.61 mmol). The mixture was stirred at 120°C for 40 h. After cooling to room temperature, the mixture was purified by silica gel column chromatography (petroleum ether:EtOAc = 5:1-CH2Cl2:MeOH = 30:1) to give the title compound (12 mg, 5%) as a yellow solid.
[00227] EXAMPLE 19: Preparation of 4-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-3- fluoro-N-((3-fluoro-2'-methyl '-bipyridin-5-yl)methyl)pyridin-2-amine (A-202)
Figure imgf000062_0004
60 [00228] Method A-Step c: 6-(2,3-difluoropyridin-4-yl)-5,6,7,8-tetrahydro-1,6- naphthyridine
Figure imgf000063_0001
[00229] A mixture of 5,6,7,8-tetrahydro-1,6-naphthyridine hydrochloride (1.7 g, 10 mmol), 2,3-difluoro-4-iodopyridine (4.8 g, 20 mmol), Cs2CO3 (16.3 g, 50 mmol), Pd2(dba)3 (460 mg, 0.5 mmol) in toluene (20 mL) was heated at reflux under N2 atmosphere for 12 h. After cooling to room temperature, the mixture was filtered through Celite and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 4:1-1:1) to give the title compound (2.3 g, 88%) as a yellow solid.1H NMR (400 MHz, CDCl3) δ 8.48 (d, J = 4.2 Hz, 1H), 7.72 (d, J = 5.6 Hz, 1H), 7.45 (d, J = 7.6 Hz, 1H), 7.17 (m, 1H), 6.69 (m, 1H), 4.57 (s, 2H), 3.81 (m, 2H), 3.18 (m, 2H).
[00230] Method A-Step d: 4-(7,8-dihydro-1,6-naphthyridin-6(5H)-yl)-3-fluoro-N-((3- fluoro-2'-meth l-2 4'-bi ridin-5- l meth l ridin-2-amine
Figure imgf000063_0002
[00231] To a solution of 6-(2,3-difluoropyridin-4-yl)-5,6,7,8-tetrahydro-1,6- naphthyridine (50 mg, 0.21 mmol) and (3-fluoro-2'-methyl-2,4'-bipyridin-5-yl)methanamine (66 mg, 0.3 mmol) in NMP (1 mL), was added K2CO3 (131 mg, 1.0 mmol). The mixture was stirred at 160°C for 12 h. After cooling to room temperature, the mixture was diluted with H2O (5 mL), and extracted with EtOAc (10 mL x 3). The combined organic layers was washed with brine (10 mL x 3), dried over Na2SO4, and concentrated. The resulting residue was purified by silica gel column chromatography (petroleum ether:EtOAc = 1:1-0:1) to give the title compound (4 mg, 5%) as a yellow solid.
[00232] Table 2 shows a selection of compounds prepared according to the methods discussed above in detail and indicated in the Third column of the table:
[00233] Table 2. Selected compounds (A-1 to A-202) of the present invention.
Figure imgf000063_0003
61
Figure imgf000064_0001
62
Figure imgf000065_0001
63
Figure imgf000066_0001
64
Figure imgf000067_0001
65
Figure imgf000068_0001
66
Figure imgf000069_0001
67
Figure imgf000070_0001
68
Figure imgf000071_0001
69
Figure imgf000072_0001
70
Figure imgf000073_0001
71
Figure imgf000074_0001
72
Figure imgf000075_0001
73
Figure imgf000076_0001
74
Figure imgf000077_0001
75
Figure imgf000078_0001
76
Figure imgf000079_0001
77
Figure imgf000080_0001
BIOLOGICAL ACTIVITIES:
[0234] The primary assay is based on Wnt pathway Super-top flash (STF) reporter gene assay:
[0235] HEK293 STF stable clones (HEK293 cells stably transfected with "Super-Top Flash" TCF-luciferase reporter plasmid) were kept in complete culture medium (DMEM with 4 mM L-Gln, 1.5 g/L sodium bicarbonate and 4.5 g/L glucose containing 6 µg/mL Blasticidin and 10% FBS). L Wnt3A cells (CRL-2647, ATCC) were kept in DMEM (Gibico) containing 10% FBS (Hyclone). HEK293 STF and L Wnt3A cells were harvested when 90% confluence and cell suspension was mixed with a fixed ratio of 1:1 (HEK293 STF: L Wnt3A).100 µL/well of mixed cells suspension was added to the 96-well-plate with final cell concentration of 12,000 cells/well and then cultured for an additional 24 hours before adding compounds.
[0236] Compounds were diluted in DMSO in sequence and then diluted with DMEM medium.20 µL medium containing compound was added to the cells according to the pre- setting dose. Cell plates were incubated at 37°C for an additional 48 hours.
78 [0237] 50 µL luciferase solution (Bright-Glo, Promega) was added to each well during the 48 h incubation. The plates were incubated at room temperature for 5 min under gentle shaking. Luminescence signaling was measured with a plate reader (PHERAstar FS, BMG). The IC50 (potency) of compounds was calculated based on the inhibition of luminescence signaling.
[0238] The above mentioned compounds were tested in the primary assay described above and the data were summarized in Table 3. In particular, IC50 curves for compounds A-12, A- 36, A-100, A-103, A-166, A-168, A-194, and A-198 are shown in FIGs.1-8, respectively.
[0239] Table 3. Results of selected compounds (A-1 to A-202) of the present invention when tested in the primary assay.
Figure imgf000081_0001
79
Figure imgf000082_0001
80

Claims

What is claimed is:
1. A compound of Formula I:
Figure imgf000083_0001
or a pharmaceutically acceptable salt, solvate, stereoisomer or a tautomer thereof, wherein A is A1, A2, A3 or A4;
U is U1, U2, U3 or U4;
L is L1, L2, or L3;
Q is Q1, Q2, Q3 or Q4;
Z is Z1, Z2, Z3 or Z4;
Figure imgf000083_0002
, wherein X1 to X7 are independently selected from N and C−R13;
Figure imgf000083_0003
81
Figure imgf000084_0001
A4 is , wherein X13 and X15 are independently O, N, S or C−R4c, and X14 is N or C;
Figure imgf000084_0002
U1 is or , wherein X8 to X10 are independently selected from N and C−R14;
G1 and G2 are independently selected from N and C;
V1 and V2 are independently selected from N, O, S and C−R15;
W is V3, V4− V5 or V4 = V5, wherein V3 to V5 are independently selected from N, O, S and C−R16, wherein V4 connects with V1; and
V5 connects with V2;
U2 is C6-C10 aryl, 5-12 membered heteroaryl, 11-13 membered heterocyclophenyl or 10-13 membered heterocycloheteroaryl, wherein heterocyclo and heteroaryl comprises 1 to 4 heteroatoms independently selected from N, O and S; and
C6-C10 aryl, 5-12 membered heteroaryl, 11-13 membered heterocyclophenyl and 10- 13 membered heterocycloheteroaryl are unsubstituted or substituted with 1 to 4 R6a groups;
U3 is−OR14b,−NR14bR15b, C6-C12 aryl unsubstituted or substituted with 1-6 R13b group, 5-14 membered heteroaryl unsubstituted or substituted with 1-6 R13b group, 11-13 membered heterocyclophenyl unsubstituted or substituted with 1-6 R13b group, 10-13 membered heterocycloheteroaryl unsubstituted or substituted with 1-6 R13b group, C2-C8 alkenyl substituted with 5-6 membered aryl or heteroaryl, C2-C8 alkynyl
Figure imgf000084_0003
substituted with 5-6 membered aryl or heteroaryl, or 82
unsubstituted or substituted with 1 to 2 R13b groups, wherein heterocyclo and heteroaryl comprises 1 to 4 heteroatoms independently selected from N, O and S; and X11 is N or C−R13b;
U4 is
Figure imgf000085_0001
X10 are independently selected from N and C−R15c;
G1 and G2 are independently selected from N and C;
V1 and V2 are independently selected from N, O, S and C−R16c;
W is V3, V4− V5 or V4 = V5, wherein V3 to V5 are independently selected from N, O, S and C−R17c, wherein V4 connects with V1; and
V5 connects with V2;
Figure imgf000085_0002
, wherein Y2 is blank,−O−,−S−, −N(R18b)− or−C(R18b)(R19b)−;
L3 is−C(R2c)(R3c)− or−NHCH2CH2−;
Q1 is C6-C10 arylene or 5-12 membered heteroarylene, wherein 5-12 membered heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S; and
C6-C10 aryl and 5-12 membered heteroarylene are unsubstituted or substituted with 1 to 4 R17 groups;
Q2 is C6-C10 arylene or 5-10 membered heteroarylene, wherein 5-10 membered heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S; and
83
C6-C10 arylene and 5-10 membered heteroarylene are unsubstituted or substituted with 1 to 4 R4a groups;
Q3 is C6-C12 arylene unsubstituted or substituted with 1-6 R6b group, 5-14 membered heteroarylene unsubstituted or substituted with 1-6 R6b group, C3-C6 cycloalkylene unsubstituted or substituted with 1-6 R6b group, C3-C6 heterocylene unsubstituted or
Figure imgf000086_0001
substituted with 1-6 R6b group, or unsubstituted or substituted with 1 to 2 R6b groups, wherein heterocyclene and heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S; and
X12 is N or C−R6b;
Q4 is C6-C10 arylene or 5-12 membered heteroarylene, wherein 5-12 membered heteroarylene comprises 1 to 4 heteroatoms independently selected from N, O and S; and
C6-C10 arylene and 5-12 membered heteroarylene are unsubstituted or substituted with 1 to 4 R5c groups;
Figure imgf000086_0002
Z1 is−CN, C6 aryl, 5-6 membered heteroaryl, or , wherein 5- 6 membered heteroaryl comprises 1 to 3 heteroatoms independently selected from N, O and S;
C6 aryl and 5-6 membered heteroaryl are unsubstituted or substituted with 1 to 3 R18 groups;
Y1 is O or NR20; and
q is 0, 1, 2, or 3;
Z2 is H,−CN, halide,−OH, C1-C8 alkyl, C3-C8 cycloalkyl, C2-C8 alkenyl, C2-C8 alkynyl, C1-C8 alkylsulfonyl, C1-C8 acyl, aminoacyl, C1-C8 acylamino, C1-C8 alkylcarbamoylamino, C1-C8 alkoxycarbamoyl, C1-C8 alkylsulfonamido, C1-C8 alkylaminosulphonyl, C1-C8 alkoxy, C2-C8 alkoxyacyl, phenyl, 5-6 membered heteroaryl, or 5-7 membered heterocyclo, wherein 5-6 membered heteroaryl and 5-7 84
membered heterocyclo comprise one or more hetero atoms independently selected from N, O and S; and
phenyl, 5-6 membered heteroaryl and 5-7 membered heterocycle are unsubstituted or substituted with 1 to 3 R5a groups;
Z3 is H,−CN, halide,−OH, C1-C8 alkyl unsubstituted or substituted with 1 to 3 R12b groups, C3-C8 cycloalkyl, C2-C8 alkenyl, C2-C8 alkynyl, C1-C8 alkylsulfonyl, C1-C8 acyl, aminoacyl, C1-C8 acylamino, C1-C8 alkylcarbamoylamino, C1-C8
alkoxycarbamoyl, C1-C8 alkylsulfonamido, C1-C8 alkylaminosulphonyl, C1-C8 alkoxy, C2-C8 alkoxyacyl,−N(R7b)(R8b) unsubstituted or substituted with 1 to 3 R12b groups, phenyl unsubstituted or substituted with 1 to 3 R9b groups, 5-6 membered heteroaryl unsubstituted or substituted with 1 to 3 R10b groups, or 5-7 membered heterocyclo unsubstituted or substituted with 1 to 3 R11b groups, wherein 5-6 membered heteroaryl and 5-7 membered heterocyclo comprises 1-3 hetero atoms independently selected from N, O and S;
Figure imgf000087_0001
Z4 is−CN, C6 aryl, 5-6 membered heteroaryl, or , wherein 5- 6 membered heteroaryl comprises 1 to 3 heteroatoms independently selected from N, O and S;
C6 aryl and 5-6 membered heteroaryl are unsubstituted or substituted with 1 to 3 R6c groups;
Y3 is O or NR8c; and
q is 0, 1, 2, or 3;
R1 to R3 are independently selected from H and C1-C6 alkyl, wherein C1-C6 alkyl is unsubstituted or substituted with 1 to 3 halide,−CN,−OH, C1-C3 alkyl, C3-C5 cycloalkyl, or C1-C3 alkoxy groups;
R4 is H, halide,−CN,−OH,−NO2, C1-C6 alkyl, C3-C8 cycloalkyl, or C1-C6 alkoxy, wherein C1-C6 alkyl, C3-C8 cycloalkyl and C1-C6 alkoxy are unsubstituted or substituted with 1 to 3 halide;
85
R5 and R6 are independently selected from H, halide,−CN,−OH, amino, C1-C6 alkyl, C3-C6 cycloalkyl and C1-C6 alkoxy, wherein C1-C6 alkyl, C3-C6 cycloalkyl and C1-C6 alkoxy are unsubstituted or substituted with 1 to 3 halide;
R7 and R8 are independently selected from H and C1-C6 alkyl, or R7 and R8 together are oxo (=O);
R9 to R12 are independently selected from H, C1-C6 alkyl;
R13 is H, halide,−CN,−OH, amino,−NO2, C1-C6 alkyl, C3-C6 cycloalkyl, C1-C6 alkoxy, C1-C6 alkylthio or 1-pyrrolidino, wherein amino, C1-C6 alkyl and C1-C6 alkoxy are unsubstituted or substituted with 1 to 3 halide, C1-C3 alkyl or C3-C6 cycloalkyl groups;
R14 to R17 are independently selected from H, halide,−CN,−OH, amino, C1-C6 alkyl, C3-C6 cycloalkyl, C1-C6 alkoxy and C1-C6 alkylthio, wherein amino, C1-C6 alkyl and C1-C6 alkoxy are unsubstituted or substituted with 1 to 3 halide, C1-C3 alkyl or C3-C6 cycloalkyl groups;
R18 is H, halide,−CN,−OH, amino, C1-C6 alkyl, C3-C6 cycloalkyl or C1-C6 alkoxy, wherein amino, C1-C6 alkyl and C1-C6 alkoxy are unsubstituted or substituted with 1 to 3 halide, C1-C3 alkyl or C3-C6 cycloalkyl groups;
R19 and R20 are independently selected from H and C1-C3 alkyl, or R19 and R20 together, with adjacent atoms they attached to, form a cyclic structure;
R4a, R5a and R6a are independently selected from halide,−CN, and−OH, or R4a, R5a and R6a are independently selected from C1-C8 alkyl, C3-C8 cycloalkyl, C1-C8 alkoxy, C2-C8 alkenyl, C2-C8 alkynyl, C1-C8 alkylsulfonyl, C1-C8 acyl, aminoacyl, C1-C8 acylamino, C1-C8 alkylcarbamoylamino, C1-C8 alkoxycarbamoyl, C1-C8
alkylsulfonamido, C1-C8 alkylaminosulphonyl, C2-C8 alkoxyacyl, and 3-8 membered heterocycle, all of which are unsubstituted or substituted with 1-3 halide,−OH,−CN, C1-C3 alkyl, C1-C3 alkoxyl or C3-C8 cycloalkyl groups, wherein 3-8 membered heterocycle comprises one or more hetero atoms from N, O or S;
R2m is H, deuterium, tritium, halide,−OH,−CN, C1-C8 alkyl, C3-C8 cycloalkyl or C1- C8 alkoxy;
R2b and R3b are independently selected from H, C1-C6 alkyl unsubstituted or substituted with 1-3 groups selected from halide,−CN,−OH, C1-C6 alkyl, C3-C5 cycloalkyl and C1-C3 alkoxy;
86
R4b and R5b are independently selected from H, halide,−CN, amino, C1-C8 alkyl, C3- C8 cycloalkyl, C1-C8 alkoxy, and C1-C3 alkylamino;
R6b is H, halide,−CN or−OH, or R6b is selected from amino, C1-C6 alkyl, C3-C6 cycloalkyl, C1-C6 alkoxy, and C1-C3 alkylamino, all of which are unsubstituted or substituted with 1-3 halide, C1-C3 alkyl, or C3-C6 cycloalkyl groups;
R7b and R8b are independently selected from H, C1-C8 alkyl and C3-C8 cycloalkyl, the latter two of which are unsubstituted or substituted with 1-3 R12b, or R7 and R8 together, with adjacent atoms they attached to, form a cyclic structure;
R9b and R10b are independently selected from H, halide,−CN and−OH, or R9b and R10b are independently selected from amino, C1-C6 alkyl, C3-C6 cycloalkyl, and C1-C6 alkoxy, all of which are unsubstituted or substituted with 1-3 halide, C1-C3 alkyl, or C3-C6 cycloalkyl groups;
R11b is H, halide,−CN,−OH, amino, C1-C6 alkyl unsubstituted or substituted with halide, C3-C6 cycloalkyl, oxo, or C1-C6 alkoxy;
R12b is H,−CN,−OH, amino, C1-C6 alkyl unsubstituted or substituted with halide, C3- C6 cycloalkyl, oxo, or C1-C6 alkoxy;
R13b is H, halide,−CN,−OH, amino, C1-C6 alkyl, C3-C6 cycloalkyl, C1-C6 alkoxy, C2- C6 alkylcarbamoylamino, C2-C6 alkoxycarbamoyl, C1-C3 alkylsulphonyl,
−N(R16b)S(O)2−C1-C3 alkyl, or−N(R16b)C(O)−C1-C3 alkyl;
R14b and R15b are independently selected from H, C3-C6 cycloalkyl unsubstituted or substituted with 1 to 3 R20b groups, C1-C6 alkyl unsubstituted or substituted with 1 to 3 R20b groups, 5-6 membered aryl unsubstituted or substituted with 1 to 3 R20b groups, 5-6 membered heteroaryl unsubstituted or substituted with 1 to 3 R20b groups, and 5-6 membered heterocyclo unsubstituted or substituted with 1 to 3 R20b groups, wherein 5-6 membered heteroaryl and 5-7 membered heterocyclo comprise 1 to 3 hetero atoms independently selected from N, O and S, or R14b and R15b together, with adjacent atoms they attached to, form a cyclic structure;
R16b to R 19b are independently selected from H and C1-C6 alkyl unsubstituted or substituted with halide;
R20b is H,−CN,−OH, amino, C1-C6 alkyl, C3-C6 cycloalkyl, C1-C6 alkoxy, 5-6 membered aryl, or 5-6 membered heteroaryl, wherein 5-6 membered heteroaryl comprises 1 to 3 hetero atoms independently selected from N, O and S;
R21b is H or C1-C6 alkyl; 87
R2c and R3c are independently selected from H and C1-C6 alkyl unsubstituted or substituted with 1-3 halide;
R4c is H, halide, C1-C3 alkyl, C3-C5 cycloalkyl, or C1-C3 alkoxy;
R5c and R6c are independently selected from H, halide,−CN,−OH, amino, C1-C6 alkyl unsubstituted or substituted with 1-3 halide, C3-C5 cycloalkyl, and C1-C6 alkoxy; R7c and R8c are independently selected from H and C1-C6 alkyl, or R7c and R8c together, with adjacent atoms they attached to, form a cyclic structure;
R9c to R14c are independently selected from H, C1-C6 alkyl and−CF3;
R15c to R17c are independently selected from H, halide,−CN,−OH, amino, C1-C6 alkyl unsubstituted or substituted with 1-3 halide, C3-C5 cycloalkyl, and C1-C6 alkoxy.
Figure imgf000090_0001
2. The compound of claim 1, wherein Q is or
Figure imgf000090_0002
, wherein Q1 to Q10 are independently N or C−R17.
3. The compound of claim 1, wherein A is
Figure imgf000090_0003
.
88
4. The compound of claim 1, wherein U is
Figure imgf000091_0001
or
Figure imgf000091_0002
, wherein X20 to X23 are independently N or C−R15.
5. The compound of claim 1, wherein U is selected from:
Figure imgf000091_0003
, unsubstituted or substituted with 1 to 3 R15 groups.
6. The compound of claim 1, wherein Q is selected from:
89
Figure imgf000092_0001
, unsubstituted or substituted with 1 to 3 R4a groups.
7. The compound of claim 1, wherein Z is selected from:
Figure imgf000092_0002
, unsubstituted or substituted with 1 to 3 R5a groups.
8. The compound of claim 1, wherein Q is selected from:
90
Figure imgf000093_0001
, unsubstituted or substituted with 1 to 6 R6b groups.
9. The compound of claim 1, wherein Z is selected from:
91
Figure imgf000094_0001
, unsubstituted or substituted with 1-2 R10b groups.
10. The compound of claim 1, wherein U is selected from:
92
Figure imgf000095_0001
, unsubstituted or substituted with 1-6 R13c groups.
11. The compound of claim 1, wherein Z is
Figure imgf000095_0002
, or Z is selected from:
Figure imgf000095_0003
, unsubstituted or substituted with 1-3 R6c groups. 93
12. The compound of claim 1, wherein A is selected from:
Figure imgf000096_0001
13. The compound of claim 1, wherein the compound is selected from Table 1. 14. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 1 and a pharmaceutically acceptable carrier. 15. A method for treating a Wnt- mediated disorder in a mammal suffering therefrom, comprising administering to the mammal a therapeutically effective amount of at least one compound of claim 1, or a pharmaceutical composition thereof, and optionally in
combination with a second therapeutic agent. 16. The method of claim 15, wherein the disorder is a cell proliferative disorder selected from the group consisting of systemic sclerosis, skin fibrosis, idiopathic pulmonary fibrosis, renal fibrosis, liver fibrosis, drug-induced fibrosis, radiation-induced fibrosis, colorectal cancer, breast cancer, head and neck squamous cell carcinoma, esophageal squamous cell carcinoma, non-small cell lung cancer, gastric cancer, pancreatic cancer, leukemia, lymphoma, neuroblastoma, retinoblastoma, sarcoma, osteosarcoma, chondosarcoma, Ewing's sarcoma, rhabdomysarcoma, brain tumor, Wilms’ tumor, basal cell carcinoma, melanoma, head and neck cancer, cervical cancer and prostate cancer.
94
PCT/US2016/055851 2015-10-08 2016-10-06 Wnt signaling pathway inhibitors and therapeutic applications thereof WO2017062688A1 (en)

Priority Applications (5)

Application Number Priority Date Filing Date Title
EP16854369.2A EP3359154B1 (en) 2015-10-08 2016-10-06 Wnt signaling pathway inhibitors and therapeutic applications thereof
US15/766,799 US10450300B2 (en) 2015-10-08 2016-10-06 Wnt signaling pathway inhibitors and therapeutic applications thereof
JP2018518629A JP6853819B2 (en) 2015-10-08 2016-10-06 WNT signaling pathway inhibitors and their therapeutic uses
KR1020187013073A KR20180061363A (en) 2015-10-08 2016-10-06 WNT signaling pathway inhibitor and its therapeutic application
US16/653,217 US20200048223A1 (en) 2015-10-08 2019-10-15 Wnt signaling pathway inhibitors and therapeutic applications thereof

Applications Claiming Priority (14)

Application Number Priority Date Filing Date Title
CN201510645986.2A CN105254613A (en) 2015-10-08 2015-10-08 Heterocyclic compound with Wnt signal path inhibitory activity and application thereof
CN201510645986.2 2015-10-08
CN201610195733.4 2016-03-31
CN201610195731 2016-03-31
CN201610195731.5 2016-03-31
CN201610195733 2016-03-31
CN201610670828.7A CN107759584B (en) 2016-08-16 2016-08-16 Amino five-membered heterocyclic compound with Wnt signal channel inhibition activity and application thereof
CN201610670828.7 2016-08-16
CN201610850357.8A CN107286135B (en) 2016-03-31 2016-09-26 Heterocyclic compound with Wnt signal channel inhibition activity and application thereof
CN201610850360.XA CN106565673B (en) 2015-10-08 2016-09-26 5-fluoropyrimidine heterocyclic compound with Wnt signal channel inhibition activity and application thereof
CN201610850358.2 2016-09-26
CN201610850360.X 2016-09-26
CN201610850358.2A CN107286136B (en) 2016-03-31 2016-09-26 3-fluoropyridine heterocyclic compound and application thereof
CN201610850357.8 2016-09-26

Related Child Applications (2)

Application Number Title Priority Date Filing Date
US15/766,799 A-371-Of-International US10450300B2 (en) 2015-10-08 2016-10-06 Wnt signaling pathway inhibitors and therapeutic applications thereof
US16/653,217 Continuation US20200048223A1 (en) 2015-10-08 2019-10-15 Wnt signaling pathway inhibitors and therapeutic applications thereof

Publications (1)

Publication Number Publication Date
WO2017062688A1 true WO2017062688A1 (en) 2017-04-13

Family

ID=58488508

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2016/055851 WO2017062688A1 (en) 2015-10-08 2016-10-06 Wnt signaling pathway inhibitors and therapeutic applications thereof

Country Status (1)

Country Link
WO (1) WO2017062688A1 (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2023064585A1 (en) * 2021-10-14 2023-04-20 Vanderbilt University 7,8-dihydro-5h-1,6-naphthyridine derivatives as positive allosteric modulators of the muscarinic acetylcholine receptor m4 for treating neurological and psychiatric disorders

Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20110189097A1 (en) * 2009-11-09 2011-08-04 Dritan Agalliu Use of WNT inhibitor to inhibit angiogenesis in the CNS
WO2013110433A1 (en) 2012-01-28 2013-08-01 Merck Patent Gmbh Azaheterocyclic compounds
US20140179696A1 (en) * 2012-04-04 2014-06-26 Samumed, Llc Indazole inhibitors of the wnt signal pathway and therapeutic uses thereof
WO2014159733A1 (en) * 2013-03-14 2014-10-02 Curegenix, Inc. Compounds for treatment of fibrosis diseases
WO2014165232A1 (en) * 2013-03-12 2014-10-09 Curegenix, Inc. Compounds for treatment of cancer

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20110189097A1 (en) * 2009-11-09 2011-08-04 Dritan Agalliu Use of WNT inhibitor to inhibit angiogenesis in the CNS
WO2013110433A1 (en) 2012-01-28 2013-08-01 Merck Patent Gmbh Azaheterocyclic compounds
US20140179696A1 (en) * 2012-04-04 2014-06-26 Samumed, Llc Indazole inhibitors of the wnt signal pathway and therapeutic uses thereof
WO2014165232A1 (en) * 2013-03-12 2014-10-09 Curegenix, Inc. Compounds for treatment of cancer
WO2014159733A1 (en) * 2013-03-14 2014-10-02 Curegenix, Inc. Compounds for treatment of fibrosis diseases

Non-Patent Citations (14)

* Cited by examiner, † Cited by third party
Title
"Pharmaceutical Dosage Forms and Drug Delivery Systems", 1999, LIPPINCOTT WILLIAMS & WILKINS
"Pharmaceutical Dosage Forms", 1980, MARCEL DECKER
"Remington: The Science and Practice of Pharmacy", 1995, MACK PUBLISHING COMPANY
BOUTROSMLODZIK, MECH. DEV., vol. 83, 1999, pages 27 - 37
CHENNWALSH, SCIENCE, vol. 297, 2002, pages 365 - 9
DAHMEN ET AL., CANCER RES., vol. 61, 2001, pages 7039 - 43
HOANG ET AL., INT. J. CANCER, vol. 109, 2004, pages 106 - 111
HOOVERJOHN E.: "Remington's Pharmaceutical Sciences", 1975, MACK PUBLISHING CO.
J.F.W. MCOMIE: "Protective Groups in Organic Chemistry", 1973, PLENUM PRESS
KLAUSBIRCHMEIER, NAT. REV. CANCER, vol. 8, 2008, pages 387 - 98
LOGANNUSSE, ANNU. REV. CELL DEV. BIOL., vol. 20, 2004, pages 781 - 810
PERRIMON, CELL, vol. 76, 1994, pages 781 - 4
REYACLEVERS, NATURE, vol. 434, 2005, pages 843 - 850
T.W. GREENE: "Protective Groups in Organic Synthesis", vol. 3, 1981, ACADEMIC PRESS

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2023064585A1 (en) * 2021-10-14 2023-04-20 Vanderbilt University 7,8-dihydro-5h-1,6-naphthyridine derivatives as positive allosteric modulators of the muscarinic acetylcholine receptor m4 for treating neurological and psychiatric disorders

Similar Documents

Publication Publication Date Title
US10774070B2 (en) 2-(pyridin-3-yl)-pyrimidine derivatives as RET inhibitors
ES2445526T3 (en) Acetamides with N- (hetero) aryl, 2- (hetero) aryl substitution for use as Wnt signaling modulators
WO2015057963A1 (en) Fgfr4 inhibitors
EP2861590B1 (en) Compound as wnt signaling inhibitor, composition, and use thereof
JP5415403B2 (en) 9- (pyrazol-3-yl) -9H-purin-2-amine and 3- (pyrazol-3-yl) -3H-imidazo [4,5-B] pyridin-5-amine derivatives and for the treatment of cancer Their use of
RU2741000C2 (en) 1,4-disubstituted imidazole derivative
WO2018017435A1 (en) Heteroaryl compounds as inhibitors of necrosis, composition and application thereof
JP2022549274A (en) Phosphodiesterase inhibitors and uses
JP7025359B2 (en) Heteroaryl compounds that are necrosis inhibitors, their compositions and uses
JP2024505732A (en) Pyridopyrimidinone derivatives and their production methods and uses
EP4163278A1 (en) Pyrimidine compound as axl inhibitor
TW202204351A (en) Compounds having a macrocyclic structure and uses thereof
CN109942556A (en) Pyrimidinone compound and its application
US20200048223A1 (en) Wnt signaling pathway inhibitors and therapeutic applications thereof
CA3196676A1 (en) Pyrimidine compounds, compositions, and medicinal applications thereof
JP2007502298A (en) Compound
WO2017062688A1 (en) Wnt signaling pathway inhibitors and therapeutic applications thereof
CA3103879A1 (en) 1,2,4-triazole derivatives as tankyrase inhibitors
WO2019136093A1 (en) Inhibitors of low molecular weight protein tyrosine phosphatase (lmptp) and uses thereof
CN110734436A (en) Pyrimidine or pyrazine ring compounds and application thereof
CN111377873B (en) Aminopyrimidine compounds, their preparation and use
AU2018337138B2 (en) 2-substituted pyrazole amino-4-substituted amino-5-pyrimidine formamide compound, composition, and application thereof
CN114728998A (en) Sulfonamide compounds targeting CD73 and adenosine receptors
KR20150105302A (en) Cyclic sulfonamide containing derivatives as inhibitors of hedgehog signaling pathway
CN108148058B (en) 4- (2-mercaptothiadiazole) substituted pyrimidine derivative, and preparation method and application thereof

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 16854369

Country of ref document: EP

Kind code of ref document: A1

WWE Wipo information: entry into national phase

Ref document number: 2018518629

Country of ref document: JP

NENP Non-entry into the national phase

Ref country code: DE

ENP Entry into the national phase

Ref document number: 20187013073

Country of ref document: KR

Kind code of ref document: A

WWE Wipo information: entry into national phase

Ref document number: 2016854369

Country of ref document: EP