WO2016005992A1 - SUBSTITUTED NAPHTHO[2,1-b][1,10]PHENANTHROLINE BASED FLUORESCENT DYES AND APPLICATION THEREOF - Google Patents

SUBSTITUTED NAPHTHO[2,1-b][1,10]PHENANTHROLINE BASED FLUORESCENT DYES AND APPLICATION THEREOF Download PDF

Info

Publication number
WO2016005992A1
WO2016005992A1 PCT/IN2015/000076 IN2015000076W WO2016005992A1 WO 2016005992 A1 WO2016005992 A1 WO 2016005992A1 IN 2015000076 W IN2015000076 W IN 2015000076W WO 2016005992 A1 WO2016005992 A1 WO 2016005992A1
Authority
WO
WIPO (PCT)
Prior art keywords
heteroatoms
phenanthroline
carbonitrile
piperidin
preferably selected
Prior art date
Application number
PCT/IN2015/000076
Other languages
French (fr)
Inventor
Atul Goel
Shahida Umar
Pankaj Nag
Aamir Nazir
Lalit Kumar
Shamsuzzama
Jiaur Rahaman GAYEN
Zakir Hossain
Original Assignee
Council Of Scientific And Industrial Research
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Council Of Scientific And Industrial Research filed Critical Council Of Scientific And Industrial Research
Publication of WO2016005992A1 publication Critical patent/WO2016005992A1/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04Ortho-condensed systems

Definitions

  • the present invention relates to novel substituted dihydronaphtho[2,l- 6][l ,10]phenanthrolines and naphtho[2,l-6][l,10]phenanthrolines their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction, and processes of preparing said novel compounds.
  • the present invention relates to a compound of formula I their ion chelators and salts thereof:
  • R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , R 9 , R 10 , R 11 , R 12 are independently selected from the groups consisting of . hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, C ⁇ -Cg alkyl, C 2 -C 8 alkenyl, C ⁇ -C» alkoxyl, C 6 -C 20 aryl, C 5 -C 8 cyclo, C 6 -C 20 aryl, C 3 -C 8 cycloalkyl, C 3 -C 20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C 3 -C 20 cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C ⁇ -C& alkyl esters,
  • the present invention relates to 12,13 -dihydronaphtho [2,1 - Z > ][l,10]phenanthrolines and naphtho[2,l-6][l ,10]phenanthrolines, processes for preparing the said compounds and their applications as fluorescent probes in chemical and biological sciences such as cell imaging applications, diagnostics, fluorescent tags, ion sensors, pharmaceuticals.
  • the present invention relates to the compounds having the general formula I as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction.
  • Iron is ubiquitously found in nature, from the earth's crust to the biological systems. It is an essential trace element in all living organisms possessing indispensable physiological as well as pathophysiological functions. By virtue of its interesting oxygen affinity and facile redox chemistry it is efficiently involved in an array of biological pathways including oxygen uptake and metabolism, regulation of cell growth and differentiation, electron transfer and transcriptional regulation. Therefore highly sophisticated regulatory approaches are required to balance the demands of cells as well as to avoid its deficiency/excess accumulation (Hentze, M. W.; Muckenthaler, M. U.; Andrews, N. C. Cell 2004, 117, 285). The bulk of the iron present in biological systems is tightly bound to various enzymes, storage and regulatory proteins.
  • LIP cytosolic nonprotein bound labile iron pool
  • Fenton reaction involves the generation of hydroxyl radicals from hydrogen peroxide and the formation of aldehydes and lipid peroxy radicals from lipid hydroperoxides.
  • ROS reactive oxygen species
  • iron selective fluorescence probes are Calcein (Epsztejn, S.; Kakhlon, O.; Glickstein, H.; Breuer, W.; Cabantchik Z. I. Anal. Biochem. 1997, 248, 31), phenanthroline-fluorescein hybrids Phen green SK and Phen green FL (Petrat, F.; Rauen, U.; Groot H. D. Hepatology, 1999, 29, 1171), and siderophore-fluorescein hybrid FL-DFO (Petrat, F.; Rauen, U.; Groot H. D. Hepatology, 1999, 29, 1171).
  • Calcein (excitation maximum, 494 nm; emission maximum, 517nm), most commonly used for quantification of LIP undergoes intracellular fluorescence quenching on binding to iron in a manner proportional with the concentration of labile iron present. Since the experimental systems reach steady state levels of fluorescence within minutes, it is assumed that the LIP determination per se does not perturb short-term intracellular iron distribution. Determination of the cell-associated CAL-Fe is based on dequenching of the fluorescence signal by addition of a highly permeant chelator (mostly 2,2'-Dipyridyl) that displays a high binding affinity for the metal.
  • a highly permeant chelator mostly 2,2'-Dipyridyl
  • Calcein undergoes fluorescence quenching on binding to both the ionic forms of iron present in the LIP (Tenopoulou, M.; KURZ, T.; Doulias, P.T.; Galaris, D.; Brunk, U.T. Biochem. J. 2007, 403, 261). It is suggested in many reports that it binds (quenches) more effectively to Fe(III) rather than Fe(II) ( Thomas, F.; Serratrice, G.; Be ' guin, C; Aman, E. S.; Pierre, J. L.; Fontecave, M.; Laulhe're, J. P. J. Biol. Chem. 1999, 274, 13375).
  • iron chelators derived/inspired from siderophores are explored by tagging them with different fluorophores like fluorescein (as FL-DFO; excitation maximum, 493 nm; emission maximum, 515 nm;), coumarin and nitrobenzoxadiazole.
  • fluorescein as FL-DFO; excitation maximum, 493 nm; emission maximum, 515 nm;
  • 1,10-Phenanthroline is characterized by a weak fluorescence quantum yield due to close lying ⁇ - ⁇ * and n- ⁇ * singlet excited states.
  • Substantial efforts have been made to improve its emission efficiency as novel chelating ligands by introducing aromatic substituents at various positions.
  • novel Dihydronaphtho[2,l-b][l,10]phenanthrolines and Naphtho[2,l- 6][l,10]phenanthrolines have been synthesized and investigated as Fe (III) selective dual (colorimetric and ratiometric) fluorescent probes for cell imaging applications and quantification of ROS in Fenton reaction.
  • the present invention also relates to a highly rapid synthesis of novel 12,13-dihydronaphtho[2,l-6][l,10]phenanthrolines and naphtho[2,l- b] [ 1 , 10]phenanthrolines.
  • Main object of the present invention is to provide novel dihydronaphtho[2,l- b][l,10]phenanthroline and Naphtho[2,l-6][l,10]phenanthrolines, having the general formula I their ion chelators and salts thereof;
  • Another object of the invention is to provide processes for the preparation of the novel dihydronaphtho [2, 1 -b] [ 1 , 1 OJphenanthroline and naphtho[2, 1 -b] [ 1 , 10]-phenanthrolines, having the general formula I;
  • a further object of the invention is to provide the compounds having the general formula I their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction;
  • Another object of the present invention is to provide a method for fluorescence-based imaging or analysis of cells and/or cellular components using the compound of general formula I;
  • a yet another object of the present invention is to provide a method of detecting and estimating peroxides using the compound of general formula I their ion chelators and salts thereof in the chemical mixture, biological fluid, or in the cellular system;
  • a further object of the present invention is to provide a method of detecting and estimating reactive oxygen species using the compound of general formula I their ion chelators and salts thereof through measuring changes in fluorescence in the chemical mixture, biological fluid, or in the cellular system;
  • Another object of the present invention is to provide the compounds of general formula I their ion chelators and salts thereof for the treatment of diabetes, osteoporosis, cancer, central nervous system disorders, cardiovascular disorders, tuberculosis, reproductive health disorders, Alzheimer, Parkinson's, reactive oxygen species (ROS)-induced disorders and disorders associated with iron-imbalance.
  • ROS reactive oxygen species
  • the present invention relates to novel substituted dihydronaphtho[2,l- b][l,10]phenanthrolines and naphtho[2,l-b][l,10]phenanthrolines of the general formula I their ion chelators and salts thereof as fluorescent probes, and processes of preparing said novel compounds;
  • the present invention more particularly relates to novel 12,13 -dmydronaphtho [2,1 - 6][l,10]phenanthroline and naphtho[2,l-b][l,10]phenanthrolines, their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometnc fluorescent probes for cell imaging applications, as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction 3 ⁇ 4nd processes of preparing said novel compounds;
  • the present invention more particularly relates to a compound of formula I:
  • R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , R 9 , R 10 , R 11 , R 12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, Ci-C 8 alkyl, C 2 -C 8 alkenyl, d-Cg alkoxyl, C 6 -C 2 o aryl, C 5 -C 8 cyclo C 6 -C 2 o aryl, C3-C8 cycloalkyl, C3-C20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C3-C 2 o cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), Q-Cg alkyl esters, C 6 -C 20 ary
  • the representative compounds of the general formula I are selected from the group comprising; i. 11 -phenyl-9-(piperidin- 1 -yl)- 12, 13 -dihydronaphtho[2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (1). ii. 11 -(naphthalen- 1 -yl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b] [1 , 10]phenanthroline-8-carbonitrile (2). iii.
  • the compounds are useful for Fe(III) selective dual colorimetric and ratiometnc fluorescent sensing for cell imaging applications/analysis and quantification of ROS in Fenton reaction;
  • the compounds are having excitation maxima in the range of 330-700 nm and emission maxima in the range of 450-900 nm;
  • the present invention provides compounds having the general formula I their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, and useful biological applications as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction;
  • the present invention provides processes for the preparation of novel 12,13-dihydronaphtho[2,l-b][l,10]phenanthroline-8-carbonitrile and naphtho[2,l- 6][l,10]phenanthrolines, having the general formula I, as shown in drawing accompanying the specification wherein the said processes comprise:
  • R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , R 9 , R 10 , R 11 , R 12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, Cj-Cg alkyl, C 2 -C 8 alkenyl, Ci-C 8 alkoxyl, C 6 -C 20 aryl, C 5 -C cyclo C 6 -C 2 o aryl, C 3 -C 8 cycloalkyl, C 3 -C 20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C 3 - C 2 o cycloheteroaryl containing 1 to 3
  • the present invention provides a method for fluorescence-based imaging or analysis of cells and/or cellular components with the compound of general formula I, their ion chelators and salts thereof;
  • the present invention provides a method of detecting and estimating peroxides using the compound of general formula I, their ion chelators and salts thereof in the chemical mixture, biological fluid, or in the cellular system; In a yet another embodiment, the present invention provides a method of detecting and estimating reactive oxygen species using the compound of general formula I, their ion chelators and salts thereof through measuring changes in fluorescence in the chemical mixture, biological fluid, or in the cellular system;
  • the present invention is to provide the compounds of general formula I their ion chelators and salts thereof for the treatment of diabetes, osteoporosis, cancer, central nervous system disorders, cardiovascular disorders, tuberculosis, reproductive health disorders, Alzheimer, Parkinson's, reactive oxygen species (ROS)-induced disorders and disorders associated with iron-imbalance;
  • ROS reactive oxygen species
  • Table 1 represents the photophysical properties of the compounds of the invention.
  • Figure 1 illustrates the reaction sequences resulting in the preparation of various phenanthroline derivatives.
  • Figure 2 illustrates absorption and emission spectra of compounds 1-9 in TDW.DMSO, 9:1 (v/v).
  • Figure 4 Absorbance spectra of 10 towards increasing concentration of Fe 3+ ions (0-6.25 x lO ⁇ M).
  • Figure 14 Probable complex structure of the salt of chelator 11 and Fe 3+ .
  • Figure 16 Increase in the fluorescence intensity ratio ( ⁇ 605 / ⁇ 544 ) of 11 upon addition of different metal ions.
  • Figure 21 Changes in emission intensity of 11 (2.5x 10 " M) in the presence of Fe and hydroxylamine hydrochloride (5X 10 " M, sodium acetate (6.0 lO “4 M)).
  • Figure 22 Ratiometric fluorescence response of 11 in the presence of Fe with increasing H 2 0 2 .
  • FIG. 23 Confocal fluorescence images of HepG2 cells incubated with dye 11 only (a, ) and cells preincubated with Fe 3+ then with dye 11 (c, d).
  • Figure 24 shows cell viability assessment of dye 11 in Human HepG2 cells.
  • Figure 26 The expression of C. elegans gene ftn-1 when treated with dye 11.
  • the present invention relates to novel dihydronaphtho[2,l- 6][l,10]phenanthrolines and naphtho[2,l-b][l,10]phenanthrolines of the general formula I, their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, and useful biological applications as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction and processes of preparing said novel compounds;
  • the term 'fluorescent probe' refers to a fluorophore, suitable to localize within a specific region of a biological specimen or to respond to a specific analyte/substance;
  • the present invention more particularly relates to a compound of formula I:
  • R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , R 9 , R 10 , R 11 , R 12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, Ct-C 8 alkyl, C 2 -C8 alkenyl, Cj-Cs alkoxyl, C6-C 20 aryl, C 5 -C 8 cyclo C 6 -C 20 aryl, C 3 -C 8 cycloalkyl, C 3 -C 20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C 3 -C 20 cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), Ci-C 8 alkyl esters, C 6 -C 20 aryl esters, C
  • the representative compounds of the general formula I are selected from the group comprising; 11 -phenyl-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (1).
  • the compounds of the present invention having the general formula I, their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, and useful biological applications as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction;
  • the compounds of the present invention are as fluorescent probes, tags, markers, diagnostics, ion sensor, pharmaceuticals for detecting/trapping iron III in fluorescence-based imaging and/or analysis of cells, biological fluids, chemical mixture and/or as cellular components in fixed or live cell imaging applications;
  • the present invention relates to the processes for the preparation of novel 12,13-Dihydronaphtho[2,l-&][l,10]phenanthroline-8-carbonitrile and Naphtho[2,l-6][l,10]phenanthrolines, having the general formula I as shown in drawing accompanying the specification wherein the said processes comprises:
  • R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , R 9 , R 10 , R 1 1 , R 12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, Ci-C 8 alkyl, C 2 -C 8 alkenyl, C C 8 alkoxyl, C 6 -C 20 aryl, C 5 -C 8 cyclo C 6 -C 20 aryl, C 3 -C 8 cycloalkyl, C 3 -C 20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C 3 - C 2 o cycloheteroaryl containing 1 to 3 heteroatom
  • R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , R 9 , R 10 , R 11 , R 12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, C ⁇ -C& alkyl, C 2 -C 8 alkenyl, d-C 8 alkoxyl, C 6 -C 20 aryl, C 5 -C 8 cyclo C6-C 20 aryl, C 3 -C 8 cycloalkyl, C 3 -C 20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C 3 - C 2 o cycloheteroaryl containing 1 to
  • the present invention provides a method for fluorescence-based imaging or analysis of cells and/or cellular components using the compound of general formula I, their ion chelators and salts thereof, wherein the said method comprises the following steps: a) trapping cation in bound or free state in cellular components with a dye/compound of general formula I; ⁇ b) exciting the dye-cation complex of step a) with laser light in the wave length range c) detecting the light emitted by the dyes or complex used in step a) and step b); d) optionally generating images with the emission data obtained in step c); e) optionally performing an analysis with the data obtained in step c) or the images obtained in step d).
  • the present invention relates to a method for fluorescence-based imaging or analysis of cells and/or cellular components, the cellular matrix/components are stained with the dye/compound of the general formula I.
  • the present invention relates to a method of detecting and estimating peroxides using the compound of general formula I, their ion chelators and salts thereof in the chemical mixture, biological fluid, or in the cellular system.
  • the present invention relates to a method of detecting and estimating reactive oxygen species using the compound of general formula I, their ion chelators and salts thereof through measuring changes in fluorescence in the chemical mixture, biological fluid, or in the cellular system.
  • the present invention provides compounds of general formula I, their ion chelators and salts thereof for the treatment of diabetes, osteoporosis, cancer, central nervous system disorders, cardiovascular disorders, tuberculosis, reproductive health disorders, Alzheimer, Parkinson's, reactive oxygen species (ROS)-induced disorders and disorders associated with iron- imbalance;
  • ROS reactive oxygen species
  • EXAMPLE-7 ll-(4-chlorophenyl)-9-(piperidin-l-yl)-12,13-dihydronaphtho[2,l- b] [l,10]phenanthroline-8-carbonitrile (7)
  • EXAMPLE-8 ll-(4-methoxyphenyl)-9-(piperidin-l-yl)-12,13-dihydronaphtho[2,l- b] [l,10]phenanthroline-8-carbonitrile (8)
  • the ll'Fe 3+ complex ( ⁇ / ⁇ 561/605 nm) was prepared using ferric perchlorate (10 eq) and 11 (2.5x l0 "J M) in TDW-DMSO. The solvent was removed and analyzed by mass spectrometry suggesting a 2:1 complex formation as perchlorate salt between 11 and Fe 3+ ( Figure 14). The excitation and emisssion spectra of the complex is given in figure 15.
  • Haber-Weiss Cycle The rapid interconversion between the two spin states of iron (Fe and Fe ) associated with Fenton reaction results in the generation of ROS via a catalytic cycle called as Haber Weiss cycle.
  • the high selectivity of 11 for trapping Fe in situ generated during Fenton reaction causes the removal of the catalytic iron thereby attenuating the hazardous ROS cycle.
  • Human HepG2 cells (Origin- derived from the liver tissue of a 15 -year-old Caucasian American male with a well-differentiated hepatocellular carcinoma, Source- ATCC, USA) were cultured in Phenol Red free Low Glucose Dulbecco's Modified Eagle Medium (LG DMEM, Invitrogen) supplemented with 10% fetal bovine serum, 100 units/ml penicillin, 100 ug/ml streptomycin, 2mM 1-glutamine (Sigma,USA), and incubated at 37°C in a humidified atmosphere of 5% C0 2 in air. For experiments, cells were seeded and treated with compounds after 24 hours or when 70% confluence is reached. Confocal microscopic analysis
  • the cells were seeded in a 24-well plate at 1 *10 5 cells/ml and incubated under 5% C0 2 and 95% humidity at 37°C. When 70% confluence was reached, it was treated with Ferric citrate dissolved in Phenol Red free LG DMEM media. After 24 h, 3 ⁇ / 1 ⁇ of dye was added to the wells for 24h and the images of the phase contrast and fluorescence were obtained under a laser scanning microscope LSM 510 META (Carl Zeiss, Jena, Germany). Images were acquired with a 63x Plan Apochromat Oil Phase II 1.4 objective. Lasers used were Diode 405 nm and DPSS 561 nm.
  • control group containing dye was excited at 405 nm and emissions collected within band pass 505-550 nm.
  • the iron loaded group containing dye + Iron were excited at 561 nm and emissions collected with a long pass of 575 nm. Further, florescence intensity was quantified using image J software (Image J, National Institute of Health, Bethesda, MD). Analysis
  • Human HepG2 cells were seeded into 96-well plates at a density of 2> ⁇ 10 cells/well and cultured for 24h. After incubation of the cells with compounds at different concentrations for 48h, the cytotoxicity of the isolated compounds was determined by the MTT assay. Percent cell viability was calculated based on the absorbance measured relative to the absorbance of control cells exposed to the vehicle alone.
  • the wild type strain of nematode C. elegans N2 (var. Bristol), obtained from Caenorhabditis Genetics Center (University of Minnesota, USA), was employed for the studies.
  • the nematodes were maintained in the laboratory on Nutrient Growth Medium (NGM) Agar plates seeded with bacteria E. coli strain OP50 as the food for nematodes. Plates were maintained at 22 °C and each experiment was carried out in synchronized nematode populations for nullifying any effects caused as a result of difference in age/ developmental stages of the nematodes.
  • the synchronization was achieved by isolating embryos from gravid nematodes employing standard axenisation method.
  • NGM plates seeded with E. coli strain OP50 served as culture plates for the control group. The seeded plates were incubated overnight at 22 ° C for culturing of bacteria into a fine lawn. Isolated embryos were added onto these plates and the nematodes were raised on these plates for 48 h in order to obtain an age synchronized population of early-adult worms for further analysis.
  • RNAi induced silencing of gene ftn-l Silencing of ftn-l was achieved by employing RNAi induced gene silencing approach via standard feeding protocol as described previously.
  • the freshly cultured clones were seeded onto NGM plates containing ImM isopropyl ⁇ -D- 1- thiogalactopyranoside (IPTG; Sigma, Cat. No. 16758) and 25mg/L carbenicillin (Sigma; Cat. No. CI 389) and incubated overnight at 22°C for successful induction.
  • IPTG ImM isopropyl ⁇ -D- 1- thiogalactopyranoside
  • carbenicillin Sigma; Cat. No. CI 389
  • Age synchronized worms under study were washed 2 to 3 times using M9 buffer, to remove adhering bacteria and transferred onto 2% agarose padded slides carrying a drop of mounting medium and sealed with a cover slip.
  • the mounting medium was pre-mixed with 100 mM sodium azide (Sigma, Cat no. 71289) which aids in immobilization of the worms without killing them.
  • Imaging of these live immobilized worms was performed using confocal microscope LSM 510 META (Carl Zeiss, Jena, Germany). Images were acquired with a 63x Plan Apochromat Oil Phase II 1 .4 objective.
  • the analysis of unbound/ free dye 11 was carried out with an excitation of 405 ran and emissions collected within band pass 505-550 nm.
  • RNAzol® RT method Sigma, Cat. No. R4533
  • NanoDrop Thermo, Quawell, UV-Vis Spectrophotometer, Q5000.
  • About 5ug of total RNA was used for the synthesis of cDNA using RevertAid First Strand cDNA synthesis kit (Thermo Scientific, Cat. No. #K1622). Quantification of mRNA levels was carried out using SYBR Green (Thermo Scientific Cat. No. #K0251) chemistry.
  • cDNA equivalent to 125ng was amplified in 25ul maxima using Stratagene MX3005P detection system (Agilent Technologies).
  • the program for amplification was, 50°C for 2 minutes 95°C for 10 minutes (1 cycle), followed by 95°C for 30 seconds, 55°C for 30 seconds and 60°C for 30 seconds (40 cycle) and melting curve detection (95°C for 5 sec, 65°C for 1 min).
  • Example of each sample was carried out in duplicate sets. Fold change of all samples were analyzed using comparative 2 " ⁇ 0 ⁇ .
  • Integrated DNA Technologies (IDT) software was used for designing of primers of desired genes, act-1 mRNA was used as endogenous control for normalization.
  • Dye 11 binds to Fe 3+ present in LIP in both wild type and ftn-1 silenced C. elegans
  • dye 11 responded to the elevated levels of endogenous iron after silencing of iron regulatory gene ftn-1 providing a tool to fathom the secrets of LIP.
  • C. elegans gene ftn-1 plays an important role in handling of iron within the system. We, hence, endeavored to study the effect of compound 11 on the expression of ftn-1.

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Nitrogen Condensed Heterocyclic Rings (AREA)

Abstract

The present invention relates to novel dihydronaphtho[2,l-b][l,10]phenanthrolines and naphtho[2,l-b][l,10]phenanthrolines of the general formula I which can be used potentially as fluorescent probes in chemical and biological sciences such as cell imaging applications, diagnostics, fluorescent tags, ion sensor, pharmaceuticals and other useful applications, and a process of preparing said novel compounds and quantification of reactive oxygen species. The compounds are prepared by reacting lactones in isolated or rigid conformations with methylene carbonyl moiety in the presence of a base in an organic solvent.

Description

SUBSTITUTED NAPHTHO[2,1-6][1,10]PHENANTHROLINE BASED
FLUORESCENT DYES AND APPLICATION THEREOF
FIELD OF THE INVENTION
The present invention relates to novel substituted dihydronaphtho[2,l- 6][l ,10]phenanthrolines and naphtho[2,l-6][l,10]phenanthrolines their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction, and processes of preparing said novel compounds.
Particularly, the present invention relates to a compound of formula I their ion chelators and salts thereof:
Figure imgf000002_0001
I wherein R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12 are independently selected from the groups consisting of . hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, C\-Cg alkyl, C2-C8 alkenyl, C\-C» alkoxyl, C6-C20 aryl, C5-C8 cyclo, C6-C20 aryl, C3-C8 cycloalkyl, C3-C20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C3-C20 cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C\-C& alkyl esters, C6- C2o aryl esters, C]-C8 alkylthio, Cj-C8 alkyl amino, C6-C20 aryl amino, Q-Cg cycloalkyl amino, C6-C2o cycloaryl amino, Q-Cg acylamino, Q-Cg acylthio, d-Cg acyl, C6-C20 aroyl, C Cg acyloxy, amido, thioamido, C5-C20 arylamido, C3-C20 arylheteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C2o heteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C -C2o arylthioamido, C3-C20 arylheterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3- C2o heterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S). More particularly, the present invention relates to 12,13 -dihydronaphtho [2,1 - Z>][l,10]phenanthrolines and naphtho[2,l-6][l ,10]phenanthrolines, processes for preparing the said compounds and their applications as fluorescent probes in chemical and biological sciences such as cell imaging applications, diagnostics, fluorescent tags, ion sensors, pharmaceuticals.
More particularly, the present invention relates to the compounds having the general formula I as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction.
BACKGROUND OF THE INVENTION Iron is ubiquitously found in nature, from the earth's crust to the biological systems. It is an essential trace element in all living organisms possessing indispensable physiological as well as pathophysiological functions. By virtue of its interesting oxygen affinity and facile redox chemistry it is efficiently involved in an array of biological pathways including oxygen uptake and metabolism, regulation of cell growth and differentiation, electron transfer and transcriptional regulation. Therefore highly sophisticated regulatory approaches are required to balance the demands of cells as well as to avoid its deficiency/excess accumulation (Hentze, M. W.; Muckenthaler, M. U.; Andrews, N. C. Cell 2004, 117, 285). The bulk of the iron present in biological systems is tightly bound to various enzymes, storage and regulatory proteins. Only a fraction of iron is free and exists as cytosolic nonprotein bound labile iron pool (LIP). Transient changes in the LIP status can either be caused locally due to ischaemia or systematically as in case of genetic haemochromatosis or transfusion-induced iron overload. Prooxidant-mediated intracellular reductive stress can also result in reductive iron release from intracellular stores, including ferritin. If the cellular homeostasis of iron gets disturbed its catalytically active labile form triggers Fenton reaction leading to various diseases, such as diabetes, osteoporosis, cancer, central nervous system disorders, cardiovascular disorders, tuberculosis, reproductive health disorders, Alzheimer, Parkinson's, reactive oxygen species (ROS)-induced disorders and disorders associated with iron- imbalance (Kell, D.B. BMC Medical Genomics, 2009, 2, 1). Fenton reaction involves the generation of hydroxyl radicals from hydrogen peroxide and the formation of aldehydes and lipid peroxy radicals from lipid hydroperoxides. These reactive oxygen species (ROS) interacts with various biological macromolecules such as lipids, proteins, nucleic acids etc causing peroxidative tissue damage (Dixon, S. J.; Stockwell, B. R. Nat. Chem. Biol. 2014, 10, 9).
Commercially available iron selective fluorescence probes are Calcein (Epsztejn, S.; Kakhlon, O.; Glickstein, H.; Breuer, W.; Cabantchik Z. I. Anal. Biochem. 1997, 248, 31), phenanthroline-fluorescein hybrids Phen green SK and Phen green FL (Petrat, F.; Rauen, U.; Groot H. D. Hepatology, 1999, 29, 1171), and siderophore-fluorescein hybrid FL-DFO (Petrat, F.; Rauen, U.; Groot H. D. Hepatology, 1999, 29, 1171). Calcein (excitation maximum, 494 nm; emission maximum, 517nm), most commonly used for quantification of LIP undergoes intracellular fluorescence quenching on binding to iron in a manner proportional with the concentration of labile iron present. Since the experimental systems reach steady state levels of fluorescence within minutes, it is assumed that the LIP determination per se does not perturb short-term intracellular iron distribution. Determination of the cell-associated CAL-Fe is based on dequenching of the fluorescence signal by addition of a highly permeant chelator (mostly 2,2'-Dipyridyl) that displays a high binding affinity for the metal. Calcein undergoes fluorescence quenching on binding to both the ionic forms of iron present in the LIP (Tenopoulou, M.; KURZ, T.; Doulias, P.T.; Galaris, D.; Brunk, U.T. Biochem. J. 2007, 403, 261). It is suggested in many reports that it binds (quenches) more effectively to Fe(III) rather than Fe(II) ( Thomas, F.; Serratrice, G.; Be'guin, C; Aman, E. S.; Pierre, J. L.; Fontecave, M.; Laulhe're, J. P. J. Biol. Chem. 1999, 274, 13375). Further, apart from quenching issues, calcein also suffers from selectivity problems not only between the two ionic forms of Fe but also shows significant interference from other divalent metal ions. Similarly other iron probes, Phen green SK (excitation maximum, 507 nm; emission maximum, 532 nm) and Phen green FL (excitation maximum, 492 nm; emission maximum, 517 nm) also respond to both major spin states of iron. Once again, selectivity is a major issue associated with these probes as other metal ions can exhibit a nonspecific turn-off quenching response. To obtain a better selectivity, naturally occurring iron chelators derived/inspired from siderophores are explored by tagging them with different fluorophores like fluorescein (as FL-DFO; excitation maximum, 493 nm; emission maximum, 515 nm;), coumarin and nitrobenzoxadiazole. 1,10-Phenanthroline is characterized by a weak fluorescence quantum yield due to close lying π- π * and n- π* singlet excited states. Substantial efforts have been made to improve its emission efficiency as novel chelating ligands by introducing aromatic substituents at various positions. We aimed to introduce donor-acceptor and chromophore groups to develop fluorescent dihydronaphtho[2,l-i>][l,10]phenanthrolines and naphtho[2,l- 6][l,10]phenanthrolines operating on the classical push-pull system.
In the present invention novel Dihydronaphtho[2,l-b][l,10]phenanthrolines and Naphtho[2,l- 6][l,10]phenanthrolines have been synthesized and investigated as Fe (III) selective dual (colorimetric and ratiometric) fluorescent probes for cell imaging applications and quantification of ROS in Fenton reaction. The present invention also relates to a highly rapid synthesis of novel 12,13-dihydronaphtho[2,l-6][l,10]phenanthrolines and naphtho[2,l- b] [ 1 , 10]phenanthrolines. OBJECT OF THE INVENTION
Main object of the present invention is to provide novel dihydronaphtho[2,l- b][l,10]phenanthroline and Naphtho[2,l-6][l,10]phenanthrolines, having the general formula I their ion chelators and salts thereof;
Another object of the invention is to provide processes for the preparation of the novel dihydronaphtho [2, 1 -b] [ 1 , 1 OJphenanthroline and naphtho[2, 1 -b] [ 1 , 10]-phenanthrolines, having the general formula I; A further object of the invention is to provide the compounds having the general formula I their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction; Another object of the present invention is to provide a method for fluorescence-based imaging or analysis of cells and/or cellular components using the compound of general formula I;
A yet another object of the present invention is to provide a method of detecting and estimating peroxides using the compound of general formula I their ion chelators and salts thereof in the chemical mixture, biological fluid, or in the cellular system; A further object of the present invention is to provide a method of detecting and estimating reactive oxygen species using the compound of general formula I their ion chelators and salts thereof through measuring changes in fluorescence in the chemical mixture, biological fluid, or in the cellular system;
Another object of the present invention is to provide the compounds of general formula I their ion chelators and salts thereof for the treatment of diabetes, osteoporosis, cancer, central nervous system disorders, cardiovascular disorders, tuberculosis, reproductive health disorders, Alzheimer, Parkinson's, reactive oxygen species (ROS)-induced disorders and disorders associated with iron-imbalance.
SUMMARY OF THE INVENTION The present invention relates to novel substituted dihydronaphtho[2,l- b][l,10]phenanthrolines and naphtho[2,l-b][l,10]phenanthrolines of the general formula I their ion chelators and salts thereof as fluorescent probes, and processes of preparing said novel compounds; The present invention more particularly relates to novel 12,13 -dmydronaphtho [2,1 - 6][l,10]phenanthroline and naphtho[2,l-b][l,10]phenanthrolines, their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometnc fluorescent probes for cell imaging applications, as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction ¾nd processes of preparing said novel compounds;
The present invention more particularly relates to a compound of formula I:
Figure imgf000006_0001
I wherein R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, Ci-C8 alkyl, C2-C8 alkenyl, d-Cg alkoxyl, C6-C2o aryl, C5-C8 cyclo C6-C2o aryl, C3-C8 cycloalkyl, C3-C20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C3-C2o cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), Q-Cg alkyl esters, C6-C20 aryl esters, Ci-C8 alkylthio, Ci-Cg alkyl amino, C6-C20 aryl amino, Ci-Cg cycloalkyl amino, C6- C20 cycloaryl amino, Ci-C acylamino, Ct-Cg acylthio, Ci-Cg acyl, C6-C2o aroyl, Ci-C8 acyloxy, amido, thioamido, C5-C20 arylamido, C3-C20 arylheteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C5-C20 arylthioamido, C3-C20 arylheterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S),
More particularly, the representative compounds of the general formula I are selected from the group comprising; i. 11 -phenyl-9-(piperidin- 1 -yl)- 12, 13 -dihydronaphtho[2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (1). ii. 11 -(naphthalen- 1 -yl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b] [1 , 10]phenanthroline-8-carbonitrile (2). iii. 11 -(naphthalen-2-yl)-9-(piperidin- 1 -yl)- 12, 13-dihydronaphtho[2, 1 - b][ 1 , 10]phenanthroline-8-carbonitrile (3). iv. 1 1 -(biphenyl-4-yl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b] [ 1 , 10]phenanthroline-8-carbonitrile (4). v. 9-(piperidin- 1 -yl)- 1 1 -(pyren- 1 -yl)- 12,13 -dihydronaphtho[2, 1 -b] [ 1 , 1 Ojphenanthroline- 8-carbonitrile (5). vi. 1 1 -(4-bromophenyl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b] [ 1 , 10]phenanthroline-8-carbonitrile (6). vii. 11 -(4-chlorophenyl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b] [1 , 10]phenanthroline-8-carbonitrile (7). viii. 1 l-(4-methoxyphenyl)-9-(piperidin-l-yl)-12,13-dihydronaphtho[2,l- b] [1 , 10]phenanthroline-8-carbonitrile (8).
11 -(4-hydroxyphenyl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho[2, 1 - b] [ 1 , 10]phenanthroline-8-carbonitrile (9).
11 -(biphenyl-4-yl)-9-(piperidin- 1 -yl)naphtho[2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (10).
11 -(4-bromophenyl)-9-(piperidin- 1 -yl)naphtho [2, 1 -b] [ 1 , 10]phenanthroline-8 carbonitrile (11). xii. 11 -(4-chlorophenyl)-9-(piperidin- 1 -yl)naphtho[2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (12).
11 -(4-methoxyphenyl)-9-(piperidin- 1 -yl)naphtho [2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (13)
11 -(4-hydroxyphenyl)-9-(piperidin- 1 -yl)naphtho [2, 1 -b] [ 1 , 10]phenanthroline-8 carbonitrile (14)
9-(4-bromophenyl)- 11 -(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b] [ 1 , 10]phenanthroline- 10-carbonitrile (15)
In one embodiment of the invention, the compounds are useful for Fe(III) selective dual colorimetric and ratiometnc fluorescent sensing for cell imaging applications/analysis and quantification of ROS in Fenton reaction;
In another embodiment of the invention, the compounds are having excitation maxima in the range of 330-700 nm and emission maxima in the range of 450-900 nm; In yet another embodiment, the present invention provides compounds having the general formula I their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, and useful biological applications as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction;
In a further embodiment the present invention provides processes for the preparation of novel 12,13-dihydronaphtho[2,l-b][l,10]phenanthroline-8-carbonitrile and naphtho[2,l- 6][l,10]phenanthrolines, having the general formula I, as shown in drawing accompanying the specification wherein the said processes comprise:
Process 1
Figure imgf000009_0001
a. reacting a compound having general formula S-1 with a compound having general formula S-2 to furnish a compound having the general formula I wherein R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, Cj-Cg alkyl, C2-C8 alkenyl, Ci-C8 alkoxyl, C6-C20 aryl, C5-C cyclo C6-C2o aryl, C3-C8 cycloalkyl, C3-C20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C3- C2o cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), Ct-Cg alkyl esters, C6-C20 aryl esters, Ci-C8 alkylthio,
Figure imgf000009_0002
alkyl amino, C6-C20 aryl amino, d-C8 cycloalkyl amino, C6-C20 cycloaryl amino, C Cg acylamino, Cj-Cg acylthio, Ci-C8 acyl, C6-C20 aroyl, Ct-Cg acyloxy, amido, thioamido, C5-C20 arylamido, C3-C20 arylheteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C5-C20 arylthioamido, C3-C20 arylheterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), wherein, the reaction may proceed in a common organic solvent particularly DMF, THF, DMSO, DCM, isopropanol in the presence of a base particularly KOH, NaOH, NaH, KH, K2C03, Cs2C03 at a temperature ranging between -78°C to 150°C for a period ranging between 1 minute to 3 days, followed by oxidation in presence of an oxidant in organic solvent; b. oxidizing the isolated compound of general formula I in the presence of DDQ or different palladium catalysts without any external ligand in a common organic solvent particularly DMF, THF, DMSO, 1,4-dioxane, toluene at a temperature ranging between -78°C to 150°C for a period ranging between 1 minute to 3 days; c. isolating the compound of general formula I from the reaction mixture and purifying by chromatographic techniques;
Process 2
Figure imgf000010_0001
a. reacting a compound having general formula S-4 with a compound having general formula S-3 to furnish a compound having the general formula I wherein 1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, C C8 alkyl, C2-C8 alkenyl, Ci-Cs alkoxyl, C6-C20 aryl, C5-C8 cyclo C -C20 aryl, C3-C8 cycloalkyl, C3-C20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, 0 and S), C3- C20 cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), Ci-Cs alkyl esters, C6-C2o aryl esters, Ci-Cg alkylthio, Ci-Cg alkyl amino, C -C20 aryl amino, C\-C& cycloalkyl amino, Q-C2o cycloaryl amino, C]-C8 acylamino, Cj-Cg acylthio, Ci-Cg acyl, C6-C20 aroyl, Q-Cg acyloxy, amido, thioamido, C5-C20 arylamido, C3-C20 arylheteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C5-C20 arylthioamido, C3-C20 arylheterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), wherein, the reaction may proceed in a common organic solvent particularly DMF, THF, DMSO, DCM, isopropanol in the presence of a base particularly KOH, NaOH, NaH, KH, K2CO3, Cs2C03 at a temperature ranging between -78°C to 150°C for a period ranging between 1 minute to 3 days, followed by oxidation in presence of an oxidant in organic solvent; b. oxidizing the isolated compound of general formula I in the presence of DDQ or different palladium catalysts without any external ligand in a common organic solvent particularly DMF, THF, DMSO, 1,4-dioxane, toluene at a temperature ranging between -78oC to 150oC for a period ranging between 1 minute to 3 days; c. isolating the compound of general formula I from the reaction mixture and purifying by chromatographic techniques; wherein process 1 is independent of process 2;
In a further embodiment, the present invention provides a method for fluorescence-based imaging or analysis of cells and/or cellular components with the compound of general formula I, their ion chelators and salts thereof;
In another embodiment the present invention provides a method of detecting and estimating peroxides using the compound of general formula I, their ion chelators and salts thereof in the chemical mixture, biological fluid, or in the cellular system; In a yet another embodiment, the present invention provides a method of detecting and estimating reactive oxygen species using the compound of general formula I, their ion chelators and salts thereof through measuring changes in fluorescence in the chemical mixture, biological fluid, or in the cellular system;
In a further embodiment, the present invention is to provide the compounds of general formula I their ion chelators and salts thereof for the treatment of diabetes, osteoporosis, cancer, central nervous system disorders, cardiovascular disorders, tuberculosis, reproductive health disorders, Alzheimer, Parkinson's, reactive oxygen species (ROS)-induced disorders and disorders associated with iron-imbalance;
BRIEF DESCRIPTION OF THE DRAWINGS The present invention may be more clearly understood by reference to the following Table/Figures:
Table 1 represents the photophysical properties of the compounds of the invention. Figure 1 illustrates the reaction sequences resulting in the preparation of various phenanthroline derivatives.
Figure 2 illustrates absorption and emission spectra of compounds 1-9 in TDW.DMSO, 9:1 (v/v).
Figure 3 Emission spectra of compound 11 in solvents of varying polarity (solvatochromism).
Figure 4 Absorbance spectra of 10 towards increasing concentration of Fe3+ ions (0-6.25 x lO^ M).
Figure 5 Fluorescence spectra of 10 towards increasing concentration of Fe3+ (0-6.25 χ 10"4 M). Figure 6 Absorption spectra of 11 towards increasing concentration of Fe3+ions (0-6.8 χ 10 M).
Figure 7 Fluorescence spectra of 11 towards increasing concentration of Fe ions (0-6.8 χ lO^ M).
Figure 8 Absorption spectra of 12 towards increasing concentration of Fe 3+ ions (0-6.25 x 10"4 M).
Figure 9 Fluorescence spectra of 12 towards increasing concentration of Fe3+ ions (0-6.25 10"4 M).
Figure 10 Absorption spectra of 13 towards increasing concentration of Fe 3+ ions (0-6.25 x \0 M).
Figure 11 Fluorescence spectra of 13 towards increasing concentration of Fe3+ ions (0-6.25 lO^ M).
Figure 12 Selective colorimetric response of 11 towards Fe 3+ in visible light.
Figure 13 Selective fluorescence response of 11 towards Fe in UV light (254nm).
Figure 14 Probable complex structure of the salt of chelator 11 and Fe3+.
Figure 15 Excitation and emission spectra (at 561 nm excitation) of ll'Fe3+ complex.
Figure 16 Increase in the fluorescence intensity ratio (Ι605544) of 11 upon addition of different metal ions.
Figure 17 Fluorescence response of calcein (cal, 2.5 10" M) towards Fe (l.leq).
Figure 18 Fluorescence response of 11 (2.5 10"5 M) towards Fe3+ (5 10"4 M). Figure 19 Ratiometric fluorescence response of 11 in the presence of a) H2O2 and b) 'BuOOH with increasing Fe2+ (0-5.8 χ 10"4 M).
Figure 20 Quantification of Fe generated in situ from Fenton reagent (Η202 and Fe ) with a Fe3+ standard (5 10"* M).
Figure 21 Changes in emission intensity of 11 (2.5x 10" M) in the presence of Fe and hydroxylamine hydrochloride (5X 10" M, sodium acetate (6.0 lO"4 M)). Figure 22 Ratiometric fluorescence response of 11 in the presence of Fe with increasing H202.
Figure 23 Confocal fluorescence images of HepG2 cells incubated with dye 11 only (a, ) and cells preincubated with Fe3+ then with dye 11 (c, d). (a) and (c) Green channel images, λβΧ = 405 nm, em = 505-550 nm. (b) and (d) Red channel, λεΧ = 561 nm, λβ,η = 575 nm Long Pass.
Figure 24 shows cell viability assessment of dye 11 in Human HepG2 cells.
Figure 25 (a-b) Wild type (N2) C. elegans treated with dye 11 (3 μΜ). (c-d) ftn-1 silenced C. elegans treated with 3 μΜ dye 11. (a) and (c) Green channel images, «x = 405 nm, em = 505-550 nm. (b) and (d) Red channel, λβΧ = 561 nm, X«m = 575 nm Long Pass. Scale bar 10
Figure 26 The expression of C. elegans gene ftn-1 when treated with dye 11.
ABBREVIATIONS
DMEM Dulbecco's Modified Eagle's Medium
DIC Differential Interference Contrast
TDW Triple Distilled Water
'BuOOH tert-butyl hydrogen peroxide
DETAILED DESCRIPTION OF THE INVENTION In one embodiment, the present invention relates to novel dihydronaphtho[2,l- 6][l,10]phenanthrolines and naphtho[2,l-b][l,10]phenanthrolines of the general formula I, their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, and useful biological applications as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction and processes of preparing said novel compounds; The term 'fluorescent probe' refers to a fluorophore, suitable to localize within a specific region of a biological specimen or to respond to a specific analyte/substance;
The present invention more particularly relates to a compound of formula I:
Figure imgf000015_0001
I wherein R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, Ct-C8 alkyl, C2-C8 alkenyl, Cj-Cs alkoxyl, C6-C20 aryl, C5-C8 cyclo C6-C20 aryl, C3-C8 cycloalkyl, C3-C20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C3-C20 cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), Ci-C8 alkyl esters, C6-C20 aryl esters, Ci-C8 alkylthio, Ci-C8 alkyl amino, C6-C2o aryl amino, Ci-C8 cycloalkyl amino, C6- C2o cycloaryl amino,
Figure imgf000015_0002
acylthio, acyl, C6-C20 aroyl, Q-Q acyloxy, amido, thioamido, C5-C20 arylamido, C3-C20 arylheteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C5-C20 arylthioamido, C3-C20 arylheterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S),
More particularly, the representative compounds of the general formula I are selected from the group comprising; 11 -phenyl-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (1).
1 1 -(naphthalen-1 -yl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2, 1 - b] [1 , 10]phenanthroline-8-carbonitrile (2).
11 -(naphthalen-2-yl)-9-(piperidin- 1 -yl)- 12, 13 -dihydronaphtho [2, 1 - b] [ 1 , 10]phenanthroline-8-carbonitrile (3).
11 -(biphenyl-4-yl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b] [1 , 10]phenanthroline-8-carbonitrile (4).
9-(piperidin- 1 -yl)- 11 -(pyren- 1 -yl)- 12,13-dihydronaphtho[2, 1 -b] [1 , 10]phenanthroline- 8-carbonitrile (5).
11 -(4-bromophenyl)-9-(piperidin- 1 -yl)- 12,13-dihydronaphtho[2, 1 - b] [1 , 10]phenanthroline-8-carbonitrile (6).
11 -(4-chlorophenyl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b] [ 1 , 10]phenanthroline-8-carbonitrile (7).
11 -(4-methoxyphenyl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b] [1 , 10]phenanthroline-8-carbonitrile (8).
1 1 -(4-hydroxyphenyl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b] [ 1 , 10]phenanthroline-8-carbonitrile (9).
11 -(biphenyl-4-yl)-9-(piperidin- 1 -yl)naphtho [2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (10).
1 1 -(4-bromophenyl)-9-(piperidin- 1 -yl)naphtho [2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (11).
1 1 -(4-chlorophenyl)-9-(piperidin- 1 -yl)naphtho[2, 1 -b] [1 , 10]phenanthroline-8- carbonitrile (12).
1 1 -(4-methoxyphenyl)-9-(piperidin- 1 -yl)naphtho [2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (13). xiv. 11 -(4-hydroxyphenyl)-9-(piperidin-l -yl)naphtho[2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (14). xv. 9-(4-bromophenyl)-l l-(piperidin-l-yl)-12,13-dihydronaphtho[2,l- b] [ 1 , 1 OJphenanthroline- 10-carbonitrile (15)
The compounds of the present invention having the general formula I, their ion chelators and salts thereof as Fe(III) selective dual colorimetric and ratiometric fluorescent probes for cell imaging applications, and useful biological applications as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction;
More particularly, the compounds of the present invention, their ion chelators and salts thereof are as fluorescent probes, tags, markers, diagnostics, ion sensor, pharmaceuticals for detecting/trapping iron III in fluorescence-based imaging and/or analysis of cells, biological fluids, chemical mixture and/or as cellular components in fixed or live cell imaging applications;
In another embodiment of the present invention, the present invention relates to the processes for the preparation of novel 12,13-Dihydronaphtho[2,l-&][l,10]phenanthroline-8-carbonitrile and Naphtho[2,l-6][l,10]phenanthrolines, having the general formula I as shown in drawing accompanying the specification wherein the said processes comprises:
Process 1
Figure imgf000017_0001
a. reacting a compound having general formula S-1 with a compound having general formula S-2 to furnish a compound having the general formula I wherein R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R1 1, R12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, Ci-C8 alkyl, C2-C8 alkenyl, C C8 alkoxyl, C6-C20 aryl, C5-C8 cyclo C6-C20 aryl, C3-C8 cycloalkyl, C3-C20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C3- C2o cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), Q-Cs alkyl esters, C6-C20 aryl esters, Ci-Cg alkylthio, CrC8 alkyl amino, C6-C20 aryl amino, Q-Cg cycloalkyl amino, C6-C2o cycloaryl amino,
Figure imgf000018_0001
acylamino, Ci-C8 acylthio, C C8 acyl, C6-C20 aroyl, Q-Cs acyloxy, amido, thioamido, C5-C20 arylamido, C3-C20 arylheteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C5-C20 arylthioamido, C3-C20 arylheterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), wherein, the reaction may proceed in a common organic solvent particularly DMF, THF, DMSO, DCM, isopropanol in the presence of a base particularly KOH, NaOH, NaH, KH, K2C03, Cs2C03 at a temperature ranging between -78°C to 150°C for a period ranging between 1 minute to 3 days; b. oxidizing the isolated compound of general formula I in the presence of DDQ or different palladium catalysts without any external ligand in a common organic solvent particularly DMF, DMSO, 1,4-dioxane, toluene at a temperature ranging between - 78°C to 150°C for a period ranging between 1 minute to 3 days; c. isolating the compound of general formula I from the reaction mixture and purifying by chromatographic techniques;
Process 2
Figure imgf000018_0002
a. reacting a compound having general formula S-4 with a compound having general formula S-3 to furnish a compound having the general formula I wherein R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, C\-C& alkyl, C2-C8 alkenyl, d-C8 alkoxyl, C6-C20 aryl, C5-C8 cyclo C6-C20 aryl, C3-C8 cycloalkyl, C3-C20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C3- C2o cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C C8 alkyl esters, C6-C20 aryl esters, Q-C8 alkylthio, Ci-C8 alkyl amino, C6-C20 aryl amino, Cj-Cg cycloalkyl amino, C6-C20 cycloaryl amino, Q-Cg acylamino, Ci-Q acylthio, C!-C8 acyl, C6-C2o aroyl, Ci-C8 acyloxy, amido, thioamido, C5-C2o arylamido, C3-C20 arylheteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C5-C20 arylthioamido, C3-C20 arylheterothioamido containing 1 to 6 heteroatoms (preferably selected from N, 0 and S), C3-C20 heterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), wherein, the reaction may proceed in a common organic solvent particularly DMF, THF, DMSO, DCM, isopropanol in the presence of a base particularly KOH, NaOH,
NaH, KH, K2CO3, Cs2C03 at a temperature ranging between -78°C to 150°C for a period ranging between 1 minute to 3 days; b. oxidizing the isolated compound of general formula I in the presence of DDQ or different palladium catalysts without any external ligand in a common organic solvent particularly DMF, DMSO, 1,4-dioxane, toluene at a temperature ranging between - 78°C to 150°C for a period ranging between 1 minute to 3 days; c. isolating the compound of general formula I from the reaction mixture and purifying by chromatographic techniques; wherein process 1 is independent of process 2; In a further embodiment, the present invention provides a method for fluorescence-based imaging or analysis of cells and/or cellular components using the compound of general formula I, their ion chelators and salts thereof, wherein the said method comprises the following steps: a) trapping cation in bound or free state in cellular components with a dye/compound of general formula I; \ b) exciting the dye-cation complex of step a) with laser light in the wave length range
Figure imgf000020_0001
c) detecting the light emitted by the dyes or complex used in step a) and step b); d) optionally generating images with the emission data obtained in step c); e) optionally performing an analysis with the data obtained in step c) or the images obtained in step d).
In one embodiment, the present invention relates to a method for fluorescence-based imaging or analysis of cells and/or cellular components, the cellular matrix/components are stained with the dye/compound of the general formula I.
In another embodiment, the present invention relates to a method of detecting and estimating peroxides using the compound of general formula I, their ion chelators and salts thereof in the chemical mixture, biological fluid, or in the cellular system.
In a yet another embodiment, the present invention relates to a method of detecting and estimating reactive oxygen species using the compound of general formula I, their ion chelators and salts thereof through measuring changes in fluorescence in the chemical mixture, biological fluid, or in the cellular system.
The present invention provides compounds of general formula I, their ion chelators and salts thereof for the treatment of diabetes, osteoporosis, cancer, central nervous system disorders, cardiovascular disorders, tuberculosis, reproductive health disorders, Alzheimer, Parkinson's, reactive oxygen species (ROS)-induced disorders and disorders associated with iron- imbalance;
Synthesis:
EXAMPLES:
Following examples are given by way of illustration and should not construe the scope of the present invention.
EXAMPLE ! ll-phenyl-9-(piperidin-l-yl)-12,13-dihydronaphtho[2,l-A][1 0]phenanthroline-8- carbonitrile (1)
A mixture of 2-oxo-6-phenyl-4-(piperidin-l -yl)-2H-pyran-3-carbonitrile having general formula S-l (280 mg, 1 mmol, 1 equiv.), 10,1 l-dihydrobenzo[6][l ,10]phenanthrolin-8(9H)- one having general formula S-2 (248 mg, 1 mmol, 1 equiv.), and NaH (60% dispersion in oil, 1.5 mmol, 1.5 equiv.) in dry DMF (5 mL) was stirred at 25°C for 15 min. On completion the reaction mixture was poured onto crushed ice with vigorous stirring and finally neutralized with 10% HC1. The precipitate obtained was filtered and purified on a silica gel column with 0.5% methanol in chloroform as the eluent to afford 350 mg (75%) as a yellow solid; Rf = 0.56 (chloroform/methanol, 20: 1 , v/v); mp (chloroform/methanol) 266-268 °C; MS (ESI) 467 [M + H+];
EXAMPLE-2 ll-(naphthalen-l-yl)-9-(piperidin-l-yl)-12,13-dihydronaphtho[2,l- b] [l,10]phenanthroline-8-carbonitrile (2)
A mixture of 6-(naphthalen-l-yl)-2-oxo-4-(piperidin-l-yl)-2H-pyran-3-carbonitrile having general formula S-l (330 mg, 1 mmol, 1 equiv.), 10,1 l-dihydrobenzo[6] [1,1 OJphenanthrolin- 8(9H)-one having general formula S-2 (248 mg, 1 mmol, 1 equiv.), and NaH (60% dispersion in oil, 1.5 mmol, 1.5 equiv) in dry DMF (5 mL) was stirred at 27°C for 20 min. On completion the reaction mixture was poured onto crushed ice with vigorous stirring and finally neutralized with 10% HCl. The precipitate obtained was filtered and purified on a silica gel column with 0.5% methanol in chloroform as the eluent to afford 410 mg (79%) as a yellow solid; Rf = 0.53 (chloroform/methanol, 20:1, v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 517[M + H+];
EXAMPLE-3 ll-(naphthalen-2-yl)-9-(piperidin-l-yl)-12,13-dihydronaphtho[2,l- b][l,10]phcnanthroline-8-carbonitrile (3)
A mixture of 6-(naphthalen-2-yl)-2-oxo-4-(piperidin-l-yl)-2H-pyran-3-carbonitrile having general formula S-l (330 mg, 1 mmol, 1 equiv.), 10,l l-dihydrobenzo[b][l,10]phenanthrolin- 8(9H)-one having general formula S-2 (248 mg, 1 mmol, 1 equiv.), and NaH (60% dispersion in oil, 1.5 mmol, 1.5 equiv.) in dry DMF (5 mL) was stirred at 25°C for 15 min. On completion reaction mixture was poured onto crushed ice with vigorous stirring and finally neutralized with 10% HCl. The precipitate obtained was filtered and purified on a silica gel column with 0.5% methanol in chloroform as the eluent to afford 390 mg (76%) as a yellow solid; Rf = 0.50 (chloroform/methanol, 20:1, v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 517 [M + H+].
EXAMPLE-4 ll-(biphenyI-4-yl)-9-(piperidin-l-yl)-12 3-dihydronaphtho[2 -A][1 0]phenanthroIine- 8-carbonitrile (4)
A mixture of 6-(biphenyl-4-yl)-2-oxo-4-(piperidin-l-yl)-2H-pyran-3-carbonitrile having general formula S-l (356 mg, 1 mmol, 1 equiv.), 10,1 l-dihydrobenzo[6] [1,1 OJphenanthrolin- 8(9H)-one having general formula S-2 (248 mg, 1 mmol, 1 equiv.), KH(60% dispersion in oil, 1.5 mmol, 1.5 equiv.) in dry DMF (5 mL) was stirred 27°C for 20 min. On completion the reaction mixture was poured onto crushed ice with vigorous stirring and finally neutralized with 10% HCl. The precipitate obtained was filtered and purified on a silica gel column with 0.5% methanol in chloroform as the eluent to afford 450 mg (83%) as a yellow solid; Rf = 0.55 (chloroform/methanol, 20:1 , v/v); mp (chloroform/methanol) 176-178 °C; MS (ESI) 543 [M + H+].
EXAMPLE S
9-(piperidin-l-yI)-ll-(pyren-l-yl)-12,13-dihydronaphtho[2,l-6] [l,10]phenanthroline-8- carbonitrile (5)
A mixture of 2-oxo-4-(piperidin-l-yl)-6-(pyren-l-yl)-2H-pyran-3-carbonitrile having general formula S-l (404 mg, 1 mmol, 1 equiv.), 10,l l-dihydrobenzo[0][l,10]phenanthrolin-8(9H)- one having general formula S-2 (248 mg, 1 mmol, 1 equiv.), and NaH(60% dispersion in oil, 1.5 mmol, 1.5 equiv.) in dry THF (5 mL) was stirred at 25°C for 15 min. On completion the reaction mixture was poured onto crushed ice with vigorous stirring and finally neutralized with 10% HCl. The precipitate obtained was filtered and purified on a silica gel column with 0.8% methanol in chloroform as the eluent to afford 450 mg (76%) as a yellow solid; Rf = 0.52 (chloroform/methanol, 20:1, v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 591 [M + H+];
EXAMPLE-6 ll-(4-bromophenyI)-9-(piperidin-l-yI)-12,13-dihydronaphtho[2,l- b] [l,10]phenanthroline-8-carbonitrile (6)
A mixture of 6-(4-bromophenyl)-2-oxo-4-(piperidin-l-yl)-2H-pyran-3-carbonitrile having general formula S-l (359 mg, 1 mmol, 1 equiv.), 10,1 l -dihydrobenzo[6] [1,1 OJphenanthrolin- 8(9//)-one having general formula S-2 (248 mg, 1 mmol, 1 equiv.), and KH(60% dispersion in oil, 1.5 mmol, 1.5 equiv.) in dry DMF (5 mL) was stirred at 25°C for 10 min. On completion the reaction mixture was poured onto crushed ice with vigorous stirring and finally neutralized with 10% HCl. The precipitate obtained was filtered and purified on a silica gel column 1% methanol in chloroform as the eluent to afford 410 mg (75%) as a yellow solid; Rf = 0.45 (chloroform/methanol, 20: 1 , v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 545 [M + H+].
EXAMPLE-7 ll-(4-chlorophenyl)-9-(piperidin-l-yl)-12,13-dihydronaphtho[2,l- b] [l,10]phenanthroline-8-carbonitrile (7) A mixture of 6-(4-chlorophenyl)-2-oxo-4-(piperidin-l-yl)-2H-pyran-3-carbonitrile having general formula S-l (315 mg, lmmol, 1 equiv.), 10,1 l-dihydrobenzo[6] [1,1 Ojphenanthrolin- 8(9H)-one having general formula S-2 (248 mg, 1 mmol, 1 equiv.), and NaH(60% dispersion in oil, 1.5 mmol, 1.5 equiv.) in dry DMF (5 mL) was stirred at 25°C for 15 min. On completion the reaction mixture was poured onto crushed ice with vigorous stirring and finally neutralized with 10% HC1. The precipitate obtained was filtered and purified on a silica gel column with 1% methanol in chloroform as the eluent to afford 395 mg (79%) as a yellow solid; Rf = 0.46 (chloroform/methanol, 20:1, v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 501 [M + H+]. EXAMPLE-8 ll-(4-methoxyphenyl)-9-(piperidin-l-yl)-12,13-dihydronaphtho[2,l- b] [l,10]phenanthroline-8-carbonitrile (8) A mixture of 6-(4-methoxyphenyl)-2-oxo-4-(piperidin-l-yl)-2H-pyran-3-carbonitrile having general formula S-l (310 mg, lmmol, 1 equiv.), 10,1 l-dihydrobenzo[&] [1,10]phenanthrolin- 8(9H)-one having general formula S-2 (248 mg, 1 mmol, 1 equiv.), and ΚΟΗ (1.5 mmol, 1.5 equiv.) in dry THF (5 mL) was stirred at 25°C for 6 hr. On completion the solvent was evaporated and added ice cooled water with vigorous stirring and finally neutralized with 10% HC1. The precipitate obtained was filtered and purified on a silica gel column with 1% methanol in chloroform as the eluent to afford 400 mg (80%) as a yellow solid; Rf = 0.47 (chloroform/methanol, 20:1, v/v); mp (chloroform/methanol) 180 °C; MS (ESI) 497 [M + H ; EXAMPLE-9 ll-(4-hydroxyphenyl)-9-(piperidin-l-yl)-12,13-dihydronaphtho[2,l- b] [1 ,1 Ojphenanthroline-8-carbonitrile (9) 11 -(4-methoxyphenyl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2, 1 -b] [ 1 , 10]phenanthroline- 8-carbonitrile (496mg, 1 mmol, lequiv.) was dissolved in dry CH2CI2 (10 ml) and BBr3 ( 2 mmol, 2 equiv.) was added to the solution at -78°G. The reaction mixture was stirred for 50 min at -78°C and then 12 hours at 27°C. After completion, the reaction mixture was quenched with ice-cooled water and neutralized with 10% HC1. The reaction mixture was then extracted with CH2C12 and the organic layer separated, washed with brine, dried over anhydrous Na2S04, and concentrated. The residue was purified by silica gel column chromatography using 1.5% methanol in chloroform as the eluent to afford 390mg (81%) yield as a yellow solid; Rf = 0.53 (chloroform/methanol, 16:1, v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 483 [M + H+] ;
EXAMPLE-10
11 -(bipheny l-4-yl)-9-(piperidin-l -y l)naphtho [2,1 -b] [ 1 ,10] phenanthroline-8-carbonitrile (10)
Compound 11 -(biphenyl-4-yl)-9-(piperidin- 1 -yl)- 12, 13 -dihydronaphtho [2, 1 - b][l,10]phenanthroline-8-carbonitrile (543mg, 1 mmol,leq.) was refluxed in 1,4-dioxan (5 ml) at 110°C for 1 hr. with DDQ(2 mmol, 2equiv.). On completion the reaction was cooled to 27°C and then was filtered. The filterate was collected and solvent was evaporated. Finally the residue was purified by silica gel column chromatography using 0.5% methanol in chloroform as the eluent to afford 200 mg (37%) as an orange solid; Rf — 0.58 (chloroform/methanol, 20:1, v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 541 [M + H+];
EXAMPLE-11 ll-(4-bromophenyl)-9-(piperidin-l-yl)naphtho[2,l-^][l»i0]phenanthroline-8- carbonitrile (11)
11 -(4-bromophenyl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (545 mg, 1 mmol, 1 equiv.) was heated in DMSO (5 mL) at 100°C for 12 hr. with Pd(OAc)2(0.5 mmol, 0.5 equiv.). After completion, ice-cooled water was added to the reaction mixture and then extracted with CH2C12 and the organic layer separated, washed with brine, dried over anhydrous Na2S04, and concentrated. Finally the residue was purified by silica gel column chromatography using 1% methanol in chloroform as the eluent to afford 345 mg (63%) as an orange solid. Rf = 0.52 (chloroform/methanol, 20:1, v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 543 [M + H+];
EXAMPLE-12 ll-(4-Qhlorophenyl)-9-(piperidin-l-yl)naphtho[2,l-6] [l,10]phenanthroline-8- carbonitrile (12)
11 -(4-chlorophenyl)-9-(piperidin- 1 -yl)- 12,13-dihydronaphtho[2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (501 mg, 1 mmol, 1 equiv.) was heated in DMSO (5 mL) at 100°C for 12 hr. with Pd(TFA)2 (0.5 mmol, 0.5 equiv.). After completion, ice-cooled water was added to the reaction mixture and then extracted with CH2Cl2 and the organic layer separated, washed with brine, dried over anhydrous Na2S04, and concentrated. Finally the residue was purified by silica gel column chromatography using 1% methanol in chloroform as the eluent to afford 360 mg (72%) as an orange solid; Rf = 0.50 (chloroform/methanol, 20:1, v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 499 [M + H+]; EXAMPLE-13 ll-(4-methoxyphenyl)-9-(piperidin-l-yl)naphtho[2,l-6] [l,10]phenanthroline-8- carbonitrile (13) 11 -(4-methoxyphenyl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2, 1 -b] [ 1 , 10]phenanthroline- 8-carbonitrile (497 mg, 1 mmol, 1 equiv.) was refluxed in 1,4-dioxane (5 mL) at 1 10°C for 1 hr. with DDQ (2 mmol, 2 equiv.). On completion the reaction was cooled to 27°C and then was filtered. The filterate was collected and solvent was evaporated. Finally the residue was purified by silica gel column chromatography using 1% methanol in chloroform as the eluent to afford 180 mg (36%) as an orange solid Rf = 0.53 (chloroform/methanol, 20:1, v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 495 [M + H+].
EXAMPLE-14 11 -(4-hy droxy pheny l)-9-(piperidin-l-y l)nap htho [2, 1 -b] [ 1 , 10] phenanthrolinc-8- carbonitrile (14)
1 1 -(4-methoxyphenyl)-9-(piperidin- 1 -yl)naphtho [2, 1 -b] [ 1 , 10]phenanthroline-8-carbonitrile (494mg, 1 mmol, lequiv.) was dissolved in dry DCM (10 ml) and BBr3 ( 2 mmol, 2 equiv.) was added to the solution at -78°C. The reaction mixture was stirred for 50 min at -78°C and then 12 hours at 25°C. After completion, the reaction mixture was quenched with ice-cooled water and neutralized with 10% HC1. The reaction mixture was then extracted with CH2C12 and the organic layer separated, washed with brine, dried over anhydrous Na2S04, and concentrated. The residue was purified by silica gel column chromatography using 2% methanol in chloroform as the eluent to afford 380mg (79%) yield as yellow solid Rf = 0.56 (chloroform/methanol, 16:1, v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 481 [M + H ; EXAMPLE-15
9-(4-bromophenyl)-ll-(piperidin-l-yl)naphtho[2,l-^][ljl0]phenanthroline-10- carbonitrile (15) A mixture of 2-oxo-4-(piperidin- 1 -yl)-5,6-dihydro-2H-chromeno[7,8-0] [1,10]phenanthroline- 3-carbonitrile having general formula S-4 (408mg, lmmol, lequiv.), l-(4- bromophenyl)ethanone having general formula S-3 (199mg, lmmol, lequiv.) and KH(60% dispersion in oil, 1.5 mmol, 1.5 equiv.) in dry DMF (5 mL) was stirred at 25°C for 15 min. On completion the reaction mixture was poured onto crushed ice with vigorous stirring and finally neutralized with 10% HC1. The precipitate obtained was filtered and purified on a silica gel column with 1% methanol in chloroform as the eluent to afford 109 mg (20%) as an orange solid; Rf = 0.52 (chloroform/methanol, 20:1, v/v); mp (chloroform/methanol) >290 °C; MS (ESI) 543 [M + H+]; Preparation of perchlorate salt of chelator ll'Fe3+ complex
The ll'Fe3+ complex (λβχ/λεη 561/605 nm) was prepared using ferric perchlorate (10 eq) and 11 (2.5x l0"J M) in TDW-DMSO. The solvent was removed and analyzed by mass spectrometry suggesting a 2:1 complex formation as perchlorate salt between 11 and Fe3+(Figure 14). The excitation and emisssion spectra of the complex is given in figure 15.
Photophysical studies of the compounds of general formula I
The photophysical properties of all the synthesized compounds 1-15 were examined by UV- vis and fluorescence techniques. Table 1 showed quantum yields in TDW:DMSO, 9:1 (v/v) and DMSO. These compounds produced different color emissions depending upon the nature and position of electron donor-acceptor substituents and chromophores attached on phenanthroline scaffolds (Figure 2).
Table 1. Photophysical properties of phenanthrolines (Examples 1-15) entry
Water3 DMSO"
1 0.053 0.30
2 0.0528 0.39
3 0.0456 0.42
4 0.09 0.66
5 0.024 0.38
6 0.0274 0.43
7 0.026 0.50
8 0.08 0.48
9 0.036 0.49
10 0.029 0.146
11 0.014 0.11
12 0.026 0.18
13 0.025 0.12
14 0.01 0.15
15 - -
Fluorescence quatum yield (cpf) in
aTDW:DMSO, 9:1 (v/v), bDMSO
relative to harmine in 0.1 M H2S04 as a
standard (φ = 0.45). Colo rim etric and ratiometric fluorescence response of dyes towards Fe The iron-chelating studies of all the representative compounds having general formula I in the presence of perchlorate salts of Fe2+ and Fe3+ revealed that compounds 10, 11, 12, 13 exhibited a visible color change selectively on binding with Fe3+. On gradual addition of Fe3+ ions a new absorption peak emerged at 580 run in the absorption spectra of the dyes (Figure 4, 6, 8, 10). Such a large red shift in the absorption behavior of the iron chelators (2.5xl0"5 M, λ«χ =365 nm) changed the solution from colourless to pink, suggesting colorimetric detection of Fe3+ with the "naked eye" (Figure 12). In agreement to the absorption spectra the fluorescence emission exhibited a ratiometric shift to 605 nm (Figure 5, 7, 9, 11) suggesting the ratiometric fluorescence detection of Fe by the iron chelators 10, 11, 12, and 13 (Figure 13).
Selectivity of the dye towards different metal ions To investigate the ratiometric sensing selectivity of the dye l l(2.5xl0"5 M, λβΧ =365 nm), other metal ions such as Li+, Na+, K+, Cs+, Mg2+, Co2+, Ca2+, Ba2+, Fe2+, Ni +, Cu2+, Mn2+, Al3+, Cr3+, Zn2+, Hg2+, Pb2+, Cd2+ were also screened under the same conditions(5xl0"4 M each). Only Fe3+ induced a dramatic increment of emission ratio I6o5 I 44, while others were either silent or triggered minor changes. None of them interfered with the ratiometric fluorescence response towards Fe 3+ (Figure 16).
Comparative study of naphtho-phenanthroline 11 and commercial probe calcein
Comparative study of naphtho-phenanthroline 11 and commercial probe calcein revealed that calcein exhibits a major turn off /quenching response upon addition of Fe3+ (Figure 17) while a dual colorimetric as well as ratiometric fluorescence response was observed in case of 11 selectively for Fe3+ (Figure 18).
Application of phenanthroline dye in Fenton Chemistry and method for detection/quantification of ROS
Fascinated by the remarkable ratiometric selectivity of dyes towards Fe3+ in the presence of Fe2+, we endeavored to explore the selectivity and sensitivity of dye to detect the Fe3+ expected to be generated in situ via Fenton reaction between Fe2+ and H2O2. Despite its obvious importance, the mechanism of Fenton's reaction is not fully understood. Further considering the strong ratiometric selectivity of dye 11 for Fe3+ over Fe2+ it was tested for in situ binding of Fe3+ during Fenton reaction. Gradual addition of Fe2+ (10"5-10-4 M) ions in the solution containing dye (2.5xl0"5 M) and Η202 ΐ¼00Η (lO^-lO-4 M) showed the desired ratiometric fluorescence response with a visible colour change at 365nm excitation maxima (Figure 19) thereby proving its sensitivity and application as fluorescent tool in Fenton chemistry and associated ROS generation. Furthermore, based on the ratiometric response of
3+ 3+
dye 11 , a ratiometric curve (I605 I544 vs [Fe ]) is generated using Fe standards of known
~
concentration to quantify the unknown levels of Fe and free radicals (ROS) generated during Fenton reaction (Figure 20). Considering the sensitivity of Fe and Fe in reducing
3 2
environment, the dye was tested to detect the conversion of Fe into Fe in the presence of hydroxylamine hydrochloride. No response was observed in this case as hydroxylamine hydrochloride reduced Fe to Fe (Figure 21). Method for detecting and estimating peroxides using the ion chelator 11 having general formula I using Fenton reaction
Considering the biological oxidative stress conditions, we varied the levels of H202 been
2+
added to the solution of 1 1 and Fe and increasing ratiometric response was observed (Figure 22). In order to detect and estimate the peroxides, a ratiometric curve (I o5 I544 vs [H202]) of chelator 11 in the presence of a known concentration of Fe2+is generated using standards of H202 of known concentration in order to quantify the unknown levels of H202/other organic peroxides. Treatment of iron/ROS associated disorders
R
Figure imgf000030_0001
ROO* ROOH
Haber-Weiss Cycle The rapid interconversion between the two spin states of iron (Fe and Fe ) associated with Fenton reaction results in the generation of ROS via a catalytic cycle called as Haber Weiss cycle. The high selectivity of 11 for trapping Fe in situ generated during Fenton reaction causes the removal of the catalytic iron thereby attenuating the hazardous ROS cycle. The potential of 11 to capture Fe3+ generated in situ during Fenton cycle and the biological compatibility of the phenanthroline dye (in both in vitro HepG2 cells and in vivo model C.elegans) thereby proves the wide therapeutic potential of this dye in diseases associated to iron imbalance/ Fenton associated ROS generation such as haemochromatosis, thalessemia, diabetes, osteoporosis, cancer, central nervous system disorders, cardiovascular disorders, tuberculosis, reproductive health disorders, Alzheimer, Parkinson's, and other ROS-induced disorders and disorders associated with iron-imbalance.
Biological Evaluation
Cell culture of HepG2 cells
Human HepG2 cells (Origin- derived from the liver tissue of a 15 -year-old Caucasian American male with a well-differentiated hepatocellular carcinoma, Source- ATCC, USA) were cultured in Phenol Red free Low Glucose Dulbecco's Modified Eagle Medium (LG DMEM, Invitrogen) supplemented with 10% fetal bovine serum, 100 units/ml penicillin, 100 ug/ml streptomycin, 2mM 1-glutamine (Sigma,USA), and incubated at 37°C in a humidified atmosphere of 5% C02 in air. For experiments, cells were seeded and treated with compounds after 24 hours or when 70% confluence is reached. Confocal microscopic analysis
The cells were seeded in a 24-well plate at 1 *105 cells/ml and incubated under 5% C02 and 95% humidity at 37°C. When 70% confluence was reached, it was treated with Ferric citrate dissolved in Phenol Red free LG DMEM media. After 24 h, 3 μΜ / 1 μΜ of dye was added to the wells for 24h and the images of the phase contrast and fluorescence were obtained under a laser scanning microscope LSM 510 META (Carl Zeiss, Jena, Germany). Images were acquired with a 63x Plan Apochromat Oil Phase II 1.4 objective. Lasers used were Diode 405 nm and DPSS 561 nm. The control group containing dye was excited at 405 nm and emissions collected within band pass 505-550 nm. The iron loaded group containing dye + Iron were excited at 561 nm and emissions collected with a long pass of 575 nm. Further, florescence intensity was quantified using image J software (Image J, National Institute of Health, Bethesda, MD). Analysis
The images saved from the microscope were analyzed with the LSM Image Examiner software (Carl Zeiss). Cell viability assay
Human HepG2 cells were seeded into 96-well plates at a density of 2><10 cells/well and cultured for 24h. After incubation of the cells with compounds at different concentrations for 48h, the cytotoxicity of the isolated compounds was determined by the MTT assay. Percent cell viability was calculated based on the absorbance measured relative to the absorbance of control cells exposed to the vehicle alone.
Results When HepG2 cells were incubated with only dye intense fluorescence was seen in the green channel and no fluorescence was observed in the red channel. However, the cells pretreated with Fe ions when incubated with dye, intense fluorescence in red channel and very weak fluorescence in the green channel was observed. Therefore, the live cell imaging studies indicated that dye is cell permeable and suitable for selective ratiometric imaging of Fe3+ in living systems (Figure 23). In summary, a new class of live cell permeant, solvatochromic (Figure 3) dye was identified, which exhibited strong and selective Fe sensing in in vitro live Human HepG2 cells. The live cell imaging studies clearly demonstrated that dye is a specific and non-toxic Fe3+ molecular bioprobe. Cell viability experiments revealed that Compound 11 is non toxic under the studied conditions (Figure 24).
C. elegans strains and maintenance
The wild type strain of nematode C. elegans N2 (var. Bristol), obtained from Caenorhabditis Genetics Center (University of Minnesota, USA), was employed for the studies. The nematodes were maintained in the laboratory on Nutrient Growth Medium (NGM) Agar plates seeded with bacteria E. coli strain OP50 as the food for nematodes. Plates were maintained at 22 °C and each experiment was carried out in synchronized nematode populations for nullifying any effects caused as a result of difference in age/ developmental stages of the nematodes. The synchronization was achieved by isolating embryos from gravid nematodes employing standard axenisation method.
Treatment of nematodes with dye and/or exogenous Fe3+ Dye 11 or Ferric citrate (FC) was mixed with OP50 strain of E.coli to obtain a final concentration of 3 μΜ and 25 mM respectively, followed by seeding onto NGM plates. NGM plates seeded with E. coli strain OP50 served as culture plates for the control group. The seeded plates were incubated overnight at 22°C for culturing of bacteria into a fine lawn. Isolated embryos were added onto these plates and the nematodes were raised on these plates for 48 h in order to obtain an age synchronized population of early-adult worms for further analysis.
RNAi induced silencing of gene ftn-l Silencing of ftn-l was achieved by employing RNAi induced gene silencing approach via standard feeding protocol as described previously. We used bacterial clone, specific for ftn-l, from the Ahringer RNAi library that was purchased from SA Biosciences. These clones expressing ftnl specific dsRNA were cultured overnight at 37°C, in Luria Bertani Broth (Himedia, Cat. No. Ml 245) containing 50ug/ml ampicillin(Sigma, Cat. No. AO 166). The freshly cultured clones were seeded onto NGM plates containing ImM isopropyl β-D- 1- thiogalactopyranoside (IPTG; Sigma, Cat. No. 16758) and 25mg/L carbenicillin (Sigma; Cat. No. CI 389) and incubated overnight at 22°C for successful induction.
Confocal Microscopy Analysis
Age synchronized worms under study were washed 2 to 3 times using M9 buffer, to remove adhering bacteria and transferred onto 2% agarose padded slides carrying a drop of mounting medium and sealed with a cover slip. The mounting medium was pre-mixed with 100 mM sodium azide (Sigma, Cat no. 71289) which aids in immobilization of the worms without killing them. Imaging of these live immobilized worms was performed using confocal microscope LSM 510 META (Carl Zeiss, Jena, Germany). Images were acquired with a 63x Plan Apochromat Oil Phase II 1 .4 objective. The analysis of unbound/ free dye 11 was carried out with an excitation of 405 ran and emissions collected within band pass 505-550 nm. Further the analysis of compound bound/complexed to iron was carried out with an excitation of 561 nm and emissions collected with a long pass of 575 nm. Further, florescence intensity was quantified using image J software (Image J, National Institute of Health, Bethesda, MD). Studies on expression of iron response gene (ftnl) using Real-time PCR (qPCR)
Age synchronized N2 worms of various groups were washed twice with 0.2% DEPC (Sigma, Cat. No.-D5758) treated water to remove adhering bacteria, following which total RNA was isolated using RNAzol® RT method (Sigma, Cat. No. R4533), quantified through NanoDrop (Thermo, Quawell, UV-Vis Spectrophotometer, Q5000). About 5ug of total RNA was used for the synthesis of cDNA using RevertAid First Strand cDNA synthesis kit (Thermo Scientific, Cat. No. #K1622). Quantification of mRNA levels was carried out using SYBR Green (Thermo Scientific Cat. No. #K0251) chemistry. In brief cDNA equivalent to 125ng was amplified in 25ul maxima using Stratagene MX3005P detection system (Agilent Technologies). The program for amplification was, 50°C for 2 minutes 95°C for 10 minutes (1 cycle), followed by 95°C for 30 seconds, 55°C for 30 seconds and 60°C for 30 seconds (40 cycle) and melting curve detection (95°C for 5 sec, 65°C for 1 min).Experiment of each sample was carried out in duplicate sets. Fold change of all samples were analyzed using comparative 2"ΛΔ0Τ. Integrated DNA Technologies (IDT) software was used for designing of primers of desired genes, act-1 mRNA was used as endogenous control for normalization.
Dye 11 binds to Fe3+ present in LIP in both wild type and ftn-1 silenced C. elegans
In an attempt for the first time to detect LIP 'directly' in the organism, we endeavored to examine in vivo iron binding specificity of dye 1 1 in wild type (N2) C. elegans by confocal fluorescence imaging experiments (Figure 25). We observed that treatment of worms with 3 μΜ of 11 for 24 h exhibited staining green channel (Ex = 405 nm, Em = 490-550 nm), while staining was weak in the red channel (Ex = 561, Em = 575 LP). The weak staining in the red channel indicated that dye 11 has access to Fe3+ present in LIP of wild type C. elegans. Further, Fe sensing behavior of 11 in ftn-1 silenced C. elegans was also studied following the same protocol. Interestingly at this time enhanced signals in the red channel were observed as compared to wild type strain. Henceforth, dye 11 responded to the elevated levels of endogenous iron after silencing of iron regulatory gene ftn-1 providing a tool to fathom the secrets of LIP.
The expression of C. elegans gene ftn-1 when treated with dye 11
C. elegans gene ftn-1 plays an important role in handling of iron within the system. We, hence, endeavored to study the effect of compound 11 on the expression of ftn-1. We carried out quantitative real time PCR assays to quantify the levels of ftn-1 mRNA in worms from control, dye treated and Fe3+ treated groups. We observed 2.8 fold (p < 0.01) downregulation and 3.7 fold (p < 0.01) upregulation of ftn-1 mRNA levels in worms from dye treated and Fe3+ treated groups respectively (Figure 26). We further observed that upon treatment of worms with Fe3+ and dye exhibited a reduced level of ftn-1 as compared to the one treated with only Fe3+.

Claims

1. Compounds having the general formula I, and their ion chelators, salts thereof
Figure imgf000036_0001
I wherein Rl, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, Q-C8 alkyl, C2-C8 alkenyl, C]-C8 alkoxyl, C6-C20 aryl, C5-C8 cyclo, C6-C20 aryl, C3-C8 cycloalkyl, C3-C20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C3- C2o cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), Cj-Cs alkyl esters, C6-C2o aryl esters, Ci-C8 alkylthio, C]-C8 alkyl amino, C6-C20 aryl amino, Q-Cs cycloalkyl amino, C6-C20 cycloaryl amino, C[-C8 acylamino, Ci-C8 acylthio, C\-C& acyl, C6-C2o aroyl, Q-Q acyloxy, amido, thioamido, C5-C20 arylamido, C3-C20 arylheteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C5-C20 arylthioamido, C3-C20 arylheterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S),
The compounds as claimed in claim 1 wherein the representative compounds are selected from the group comprising; i. 11 -phenyl-9-(piperidin- 1 -yl)- 12,13-dihydronaphtho[2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (1). ii. 11 -(naphthalen- 1 -yl)-9-(piperidin- 1 -yl)- 12, 13-dihydronaphtho[2, 1 - b][\ ,10]phenanthroline-8-carbonitrile
(2). iii. 11 -(naphthalen-2-yl)-9-(piperidin- 1 -yl)- 12, 13-dihydronaphtho[2, 1 - b] [ 1 , 10]phenanthroline-8-carbonitrile (3). i v. 11 -(biphenyl-4-yl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b][l,10]phenanthroline-8-carbonitrile (4). v. 9-(piperidin-l-yl)-l l-(pyren-l-yl)-12,13-dihydronaphtho[2,l- b] [ 1 , 10]phenanthroline-8-carbonitrile (5). vi. 11 -(4-bromophenyl)-9-(piperidin-l -yl)- 12,13 -dihydronaphtho [2, 1 - b [ 1 , 10]phenanthroline-8-carbonitrile (6). vii. 11 -(4-chlorophenyl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho [2,1- b][l,10]phenanthroline-8-carbonitrile (7). viii. 1 l-(4-methoxyphenyl)-9-(piperidin-l-yl)-12,13-dihydronaphtho[2,l- b] [ 1 j 10]phenanthroline-8-carbonitrile (8). ix. 11 -(4-hydroxyphenyl)-9-(piperidin- 1 -yl)- 12,13 -dihydronaphtho[2, 1 - b] [ 1 , 10]phenanthroline-8-carbonitrile (9). x. 1 l-(biphenyl-4-yl)-9-(piperidin-l-yl)naphtho[2,l-&][l,10]phenanthroline-8- carbonitrile (10). xi. 11 -(4-bromophenyl)-9-(piperidin- 1 -yl)naphtho[2, 1 -b [ 1 , 10]phenanthroline-8- carbonitrile (11). xii. 11 -(4-chlorophenyl)-9-(piperidin- 1 -yl)naphtho[2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (12). xiii. 11 -(4-methoxyphenyl)-9-(piperidin- 1 -yl)naphtho[2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (13). xiv. 11 -(4-hydroxyphenyl)-9-(piperidin- 1 -yl)naphtho[2, 1 -b] [ 1 , 10]phenanthroline-8- carbonitrile (14). xv. 9-(4-bromophenyl)- 11 -(piperidin- 1 -yl)- 12,13-dihydronaphtho[2, 1 - b] [ 1 , 10]phenanthroline- 10-carbonitrile (15).
3. The compounds as claimed in claim 1, wherein the compounds are useful for imaging and/or analysis of cells, biological fluids, chemical mixture and/or as cellular components in fixed or live cell imaging applications and useful biological applications as diagnostic kits, fluorescent probe/marker, quantification of ROS in Fenton reaction;
4. The compounds as claimed in claim 1, wherein the compounds are useful as therapeutic agent in mammals with iron-imbalance induced disorders;
5. The processes for the preparation of compounds claimed in claim 1 wherein the said processes comprise;
Process 1
Figure imgf000038_0001
formula S-2 to furnish a compound having the general formula I wherein R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, Ci-C8 alkyl, C2-C8 alkenyl, Ci-Cs alkoxyl, C6-C20 aryl, C5-C8 cyclo C6-C20 aryl, C3-C8 cycloalkyl, C3-C20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C3- C20 cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), d-Cs alkyl esters, C6-C20 aryl esters, Ci-C8 alkylthio, Ci-Cs alkyl amino, C6-C2o aryl amino, Ci-C8 cycloalkyl amino, C6-C20 cycloaryl amino, Ci-C8 acylamino, Ci-C8 acylthio, d-C8 acyl, C6-C20 aroyl, d-C8 acyloxy, amido, thioamido, C5-C20 arylamido, C3-C20 arylheteroamido containing 1 to 6 heteroatoms (preferably selected from N, 0 and S), C3-C20 heteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C5-C2o arylthioamido, C3-C2o arylheterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C2o heterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), wherein, the reaction may proceed in a common organic solvent particularly DMF, THF, DMSO, DCM, isopropanol in the presence of a base particularly KOH, NaOH, NaH, KH, K2C03, Cs2C03 at a temperature ranging between -78°C to 150°C for a period ranging between 1 minute to 3 days, followed by oxidation in presence of an oxidant in organic solvent; b. oxidizing the isolated compound of general formula I in the presence of DDQ or palladium catalysts without any external ligand in a common organic solvent particularly DMF, DMSO, 1,4-dioxane, toluene at a temperature ranging between - 78°C to 150°C for a period ranging between 1 minute to 3 days; c. isolating the compound of general formula I from the reaction mixture and purifying by chromatographic techniques;
Process 2
Figure imgf000039_0001
reacting a compound having general formula S-4 with a compound having general formula S-3 to furnish a compound having the general formula I wherein R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R1 1 , R12 are independently selected from the groups consisting of hydrogen, amine, halogens, nitriles, hydroxy, mercapto, carbontrifluoride, nitro, formyl, azido, carboxylic acid, Q-Cs alkyl, C2-C8 alkenyl, Ci-Cg alkoxyl, C6-C20 aryl, Cs-Cs cyclo C6-C20 aryl, C3-C8 cycloalkyl, C3-C20 heteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), C3- C20 cycloheteroaryl containing 1 to 3 heteroatoms (preferably selected from N, O and S), Ci-C8 alkyl esters, C6-C20 aryl esters, Ci-C8 alkylthio, Ci-C8 alkyl amino, C6-C20 aryl amino, Q-Q cycloalkyl amino, C6-C20 cycloaryl amino, Q-Q acylamino, Ci-C8 acylthio, Ci-C& acyl, C6-C20 aroyl, C!-C8 acyloxy, amido, thioamido, C5-C20 arylamido, C3-C2o arylheteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heteroamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C5-C20 arylthioamido, C3-C20 arylheterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), C3-C20 heterothioamido containing 1 to 6 heteroatoms (preferably selected from N, O and S), wherein, the reaction may proceed in a common organic solvent particularly DMF, THF, DMSO, DCM, isopropanol in the presence of a base particularly KOH, NaOH, NaH, KH, K2C03, Cs2C03 at a temperature ranging between -78°C to 150°C for a period ranging between 1 minute to 3 days, followed by oxidation in presence of an oxidant in organic solvent; b. oxidizing the isolated compound of general formula I in the presence of DDQ or palladium catalysts without any external ligand in a common organic solvent particularly DMF, DMSO, 1,4-dioxane, toluene at a temperature ranging between - 78°C to 150°C for a period ranging between 1 minute to 3 days; c. isolating the compound of general formula I from the reaction mixture and purifying by chromatographic techniques; wherein process 1 is independent of process 2.
6. A method for fluorescence-based imaging or analysis of cells and/or cellular components, comprising the following steps: a) trapping cation in bound or free state in cellular components with a dye/compound of formula I as defined in any one of claims 1-4; b) exciting the dye-cation complex of step a) with laser light in the wave length range from 330 nm to 700 nm; c) detecting the light emitted by the dyes or complex used in step a) and step b); d) optionally generating images with the emission data obtained in step c); e) optionally performing an analysis with the data obtained in step c) or the images obtained in step d).
7. The method as claimed in claim 6 wherein the cellular matrix components are stained with the dye/compound of the formula I.
8. A method of detecting and estimating peroxides using the dye/compound in the chemical mixture, biological fluid, or in the cellular system.
9. A method of detecting and estimating reactive oxygen species using the dye/compound through measuring changes in fluorescence in the chemical mixture, biological fluid, or in the cellular system.
10. The compounds of formula I as claimed in any one of claims 1-4 or the method according to any one of claims 5-9 for use in the treatment of diabetes, osteoporosis, cancer, central nervous system disorders, cardiovascular disorders, tuberculosis, reproductive health disorders, Alzheimer, Parkinson's, reactive oxygen species (ROS)-induced disorders and disorders associated with iron-imbalance.
PCT/IN2015/000076 2014-07-11 2015-02-09 SUBSTITUTED NAPHTHO[2,1-b][1,10]PHENANTHROLINE BASED FLUORESCENT DYES AND APPLICATION THEREOF WO2016005992A1 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
IN1942/DEL/2014 2014-07-11
IN1942DE2014 2014-07-11

Publications (1)

Publication Number Publication Date
WO2016005992A1 true WO2016005992A1 (en) 2016-01-14

Family

ID=52727199

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/IN2015/000076 WO2016005992A1 (en) 2014-07-11 2015-02-09 SUBSTITUTED NAPHTHO[2,1-b][1,10]PHENANTHROLINE BASED FLUORESCENT DYES AND APPLICATION THEREOF

Country Status (1)

Country Link
WO (1) WO2016005992A1 (en)

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105647520A (en) * 2016-03-23 2016-06-08 中节能万润股份有限公司 New electroluminescent material and application thereof
CN109312387A (en) * 2016-06-14 2019-02-05 剑桥显示技术有限公司 For analyzing method, composition and the sensor of analyte detection

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20020082273A1 (en) * 1998-03-11 2002-06-27 Bush Ashley I. Agents for use in the treatment of alzheimer's disease
WO2014003541A1 (en) * 2012-06-28 2014-01-03 Universiti Tunku Abdul Rahman Copper(ii) -mixed ligand complexes with anticancer properties

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20020082273A1 (en) * 1998-03-11 2002-06-27 Bush Ashley I. Agents for use in the treatment of alzheimer's disease
WO2014003541A1 (en) * 2012-06-28 2014-01-03 Universiti Tunku Abdul Rahman Copper(ii) -mixed ligand complexes with anticancer properties

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
CHELUCCI ET AL: "A new approach to the 1,10-phenanthroline core", TETRAHEDRON LETTERS, PERGAMON, GB, vol. 48, no. 19, 17 April 2007 (2007-04-17), pages 3359 - 3362, XP022031955, ISSN: 0040-4039, DOI: 10.1016/J.TETLET.2007.03.073 *
NINA BAZANOV ET AL: "Mono-, and dibenzacridine imines. Synthesis of 1a,11b- dihydrobenz[ c ]azirino[[alpha]]acridine, 4b,5a-dihydrodibenz[ c,h ]- azirino[[alpha]]acridine and 1a,13b-dihydrodibenz[ c,j ]azirino[[alpha]]acridine", JOURNAL OF HETEROCYCLIC CHEMISTRY, vol. 31, no. 4, 1 July 1994 (1994-07-01), pages 837 - 839, XP055026429, ISSN: 0022-152X, DOI: 10.1002/jhet.5570310425 *
PAUL WHITTAKER AND AL: "Genotoxicity of iron chelators in L5178Y mouse lymphoma cells", ENVIRONMENTAL AND MOLECULAR MUTAGENESIS, vol. 38, 1 January 2001 (2001-01-01), pages 347 - 356, XP002738369 *

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN105647520A (en) * 2016-03-23 2016-06-08 中节能万润股份有限公司 New electroluminescent material and application thereof
CN109312387A (en) * 2016-06-14 2019-02-05 剑桥显示技术有限公司 For analyzing method, composition and the sensor of analyte detection

Similar Documents

Publication Publication Date Title
Shen et al. A rhodamine B-based lysosomal pH probe
Zhou et al. A selective ‘Off–On’fluorescent sensor for Zn2+ based on hydrazone–pyrene derivative and its application for imaging of intracellular Zn2+
Nandre et al. A novel fluorescent “turn-on” chemosensor for nanomolar detection of Fe (III) from aqueous solution and its application in living cells imaging
Xue et al. Rational design of a ratiometric and targetable fluorescent probe for imaging lysosomal zinc ions
Zhang et al. Sensitive and selective off–on rhodamine hydrazide fluorescent chemosensor for hypochlorous acid detection and bioimaging
Liu et al. Synthesis, crystal structure and living cell imaging of a Cu 2+-specific molecular probe
Shen et al. A fluorescent sensor for fast detection of peroxynitrite by removing of C= N in a benzothiazole derivative
Ye et al. Development of a terbium complex-based luminescent probe for imaging endogenous hydrogen peroxide generation in plant tissues
Zhang et al. A highly sensitive fluorescent probe based on simple pyrazoline for Zn 2+ in living neuron cells
Huang et al. A rhodamine-based “turn-on” fluorescent chemodosimeter for Cu2+ and its application in living cell imaging
Zhou et al. An ESIPT-based two-photon fluorescent probe detection of hydrogen peroxide in live cells and tissues
Zhang et al. A simple pyrazoline-based fluorescent probe for Zn2+ in aqueous solution and imaging in living neuron cells
Jantra et al. “Turn on” orange fluorescent probe based on styryl-BODIPY for detection of hypochlorite and its application in live cell imaging
Wang et al. A novel colorimetric and near-infrared fluorescent probe for hydrogen peroxide imaging in vitro and in vivo
Gong et al. A novel two-photon fluorescent probe with long-wavelength emission for monitoring HClO in living cells and tissues
Sharma et al. A highly selective fluorescent probe for Fe 3+ in living cells: a stress induced cell based model study
Liu et al. A squaraine-based red emission off–on chemosensor for biothiols and its application in living cells imaging
Sidhu et al. A highly selective naphthalimide-based ratiometric fluorescent probe for the recognition of tyrosinase and cellular imaging
Sun et al. Highly selective fluorometric probes for detection of HClO in living cells
Li et al. Coumarin-based novel fluorescent zinc ion probe in aqueous solution
Yang et al. Imaging of formaldehyde in live cells and daphnia magna via Aza-Cope reaction utilizing fluorescence probe with large stokes shifts
Wu et al. A ratiometric fluorescent probe for the detection of endogenous hydroxyl radicals in living cells
EP3341384B1 (en) Compounds as stimuli-responsive probes, methods and applications thereof
Tang et al. A two-photon fluorescent probe for selective methylglyoxal detection and application in living cells
KR101171919B1 (en) Fluorescein derivatives having selectivity for thiol and method for in vivo monitoring thiol using the same

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 15711889

Country of ref document: EP

Kind code of ref document: A1

NENP Non-entry into the national phase

Ref country code: DE

122 Ep: pct application non-entry in european phase

Ref document number: 15711889

Country of ref document: EP

Kind code of ref document: A1