WO2014039500A1 - Bolaamphiphilic compounds, compositions and uses thereof - Google Patents
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Definitions
- bolaamphiphilic compounds complexes thereof with specific small interfering RNAs (siRNAs), and pharmaceutical compositions thereof. Also provided are methods of delivering siRNAs into the human and animal cell using the compounds, complexes and pharmaceutical compositions provided herein. Also provided are methods of delivering siRNAs into the human and animal organs, such as the brain, using the compounds, complexes and pharmaceutical compositions provided herein.
- RNAi Triggering RNA interference
- siRNAs small-interfering RNAs
- RISC RNA-induced silencing complex
- RNAi 13 ' 14 After the discovery that synthetic siRNAs can be exogenously introduced into cells to activate RNAi 13 ' 14 , this approach has become a powerful method for selective suppression of specific genes of interest in different species, showing potential for use in cancer therapeutics 3 ' 5 ' 6 .
- the biomedical utility of the synthetic siRNAs is limited by several RNA structure-related factors such as the negative charge (uptake by cells that also have negatively charged surface) and instability in the blood circulation (non- modified siRNAs have a very short half-life in blood stream, mostly because of degradation by nucleases) 4 .
- These impediments can be overcome by using polymeric or lipid-based carriers to shield the negative charge and provide protection against nuclease activity 15"17 .
- WO 02/05501 1 and WO 03/047499 both of the same applicant, disclose amphiphilic derivatives composed of at least one fatty acid chain derived from natural vegetable oils such as vernonia oil, lesquerella oil and castor oil, in which functional groups such as epoxy, hydroxy and double bonds were modified into polar and ionic headgroups.
- WO 10/128504 discloses a series of amphiphiles
- bolamphiphiles (amphiphiles with two head groups) useful for targeted drug delivery of insulin, insulin analogs, TNF, GDNF, DNA, RNA (including siRNA), enkephalin class of analgesics, and others.
- bolaamphiphiles have recently been shown to form nanovesicles that interact with and encapsulate a variety of small and large molecules including peptides ' , proteins and plasmid DNAs ' delivering them across biological membranes .
- These bolaamphiphiles are a unique class of compounds that have two hydrophilic headgroups placed at each ends of a hydrophobic domain.
- Bolaamphiphiles can form vesicles that consist of monolayer membrane that surrounds an aqueous core. Vesicles made from natural
- bolaamphiphiles such as those extracted from archaebacteria (archaesomes), are very stable and, therefore, might be employed for targeted drug delivery.
- bolaamphiphiles from archaebacteria are heterogeneous and cannot be easily extracted or chemically synthesized.
- bolas have a hydrophobic alkyl chain connected to positively charged head groups, that can potentially interact with negatively charged nucleic acids and promote their delivery into cells.
- the nature of these interactions as well as the possibility to use bolas for optimized delivery of therapeutic siRNAs remains a challenge.
- compositions comprising of complexes between bolaamphiphiles and pharmacologically or biologically active compounds.
- the bolaamphiphile vesicle complexes comprise one or more bolaamphiphilic compounds and the biologically active compound is siRNA.
- the bolaamphiphile vesicle complexes comprise one or more bolaamphiphilic compounds and the biologically active compound is a siRNA that is a mixture of two or more siRNA, wherein at least one siRNA is directed to a first target, and at least one siRNA is directed to a second target.
- novel siRNA and bolamphiphilic vesicle complex comprising siRNA and one or more bolaamphiphilic compounds.
- novel formulations of siRNA with bolaamphiphilic compounds or with bolaamhphilic vesicles are provided herein.
- siRNA-bolaamphiphile vesicle complexes or siRNA-bolaamphiphilic vesicle complexes into animals or human wherein the bolaamphiphile vesicle complex comprises one or more bolaamphiphilic compounds and siRNA.
- the cell is brain cell, liver cell, gall bladder, or a lung cell.
- the cells are cells of a lymph node, a CD4+ lymphocyte, or a cell of the mononuclear phagocyte system, including, without limitation, a monocyte, macrophage, a resident brain microglial cell and a dendritic cell.
- the cell is a cancer cell.
- kits for delivering siRNA into animal or human organs comprising the step of administering to the animal or human a pharmaceutical composition comprising of a bolaamphiphile vesicle complex; and wherein the bolaamphiphile vesicle complex comprises one or more bolaamphiphilic compounds and siRNA.
- the organ is brain, liver, gall bladder, a lymph node or a lung.
- the siRNA is delivered to a tumor.
- the active agent is an RNA-DNA heteroduplex with properties of siRNA molecules.
- the bolaamphiphile vesicle complexes comprise one or more bolaamphiphilic compounds and the biologically active compound is a siRNA that is a mixture of two or more siRNA or a mixture comprising at least one siRNA and one RNA-DNA duplex, wherein at least one siRNA or RNA-DNA duplex is directed to a first target, and at least one siRNA or RNA-DNA duplex is directed to a second target.
- the target is a promoter.
- the first and second targets are sequences of separate and distinct genes.
- the bolaamphiphilic compound consists of two hydrophilic headgroups linked through a long hydrophobic chain.
- the hydrophilic headgroup is an amino containing group.
- the hydrophilic headgroup is a tertiary or quaternary amino containing group.
- the bolaamphiphilic compound is a compound according to formula I: HG 2 L 1 HG 1
- each HG 1 and HG 2 is independently a hydrophilic head group
- L 1 is alkylene, alkenyl, heteroalkylene, or heteroalkenyl linker; unsubstituted or substituted with C 1 -C 20 alkyl, hydroxyl, or oxo.
- the pharmaceutically acceptable salt is a quaternary ammonium salt.
- the bolaamphiphilic compound of formula I is a compound according to formula II, III, IV, V, or VI:
- each HG 1 and HG 2 is independently a hydrophilic head group
- each Z 1 and Z 2 is independently -C(R 3 ) 2 -, -N(R 3 )- or -0-;
- each R la , R lb , R 3 , and R 4 is independently H or Ci-C 8 alkyl
- each R 2a and R 2b is independently H , Ci-C 8 alkyl, OH, alkoxy, or O-HG 1 or O-HG 2 ; each n8, n9, ni l, and nl2 is independently an integer from 1-20;
- nlO is an integer from 2-20;
- each dotted bond is independently a single or a double bond.
- each HG 1 and HG 2 is independently selected from:
- X is -NR 5a R 5b , or -N + R 5a R 5b R 5c ; each R 5a , and R 5b is independently H or substituted or unsubstituted C1-C2 0 alkyl or R 5a and R 5b may join together to form an N containing substituted or unsubstituted heteroaryl, or substituted or unsubstituted heterocyclyl; each R 5c is independently substituted or unsubstituted C1-C2 0 alkyl; each R 8 is independently H, substituted or unsubstituted C1-C2 0 alkyl, alkoxy, or carboxy;
- ml is 0 or 1
- each nl3, nl4, and nl5 is independently an integer from 1-20.
- the bolaamphiphilic compound of formula I is selected from the bolaambphilic compounds listed in Table 1, and wherein the compound ID is GLH-7, GLH-9, GLH-10, GLH-1 1, GLH-14, GLH-15, GLH- 17, GLH-18, GLH-22, GLH-23, GLH-24, GLH-25, GLH-27, GLH-28, GLH-30 to GLH-48, GLH-55, GLH-56, or GLH-57.
- Figure 1 Double stranded siRNA and fluorescently labeled siRNA used for the in vitro and the in vivo experiments
- Figure 2 Transfection of FITC-siRNA into dendritic cells and silencing of HSP60 gene in these cells by bolaamphiphilic vesicles with siRNA.
- Human primary dendritic cells obtained by differentiating human monocytes by the cytokines IL-4 and GM-CSF
- FITC-siRNA were exposed to GLH-19 vesicles with FITC-siRNA for 5 hours and cells were observed by a fluorescence microscope and examined by flow cytometry.
- FIG. 3 Silencing of GFP gene in stably transfected macorophages by GFP siRNA. Macrophages cell line from a mouse that stably express eGFP were exposed to GLH-19 vesicles containg eGFP- siRNA. Not all the cells expressed the GFP as can be seen from comparison of the phase contrast micrograph to the fluorescence micrograph of untreated cells (lower right micrograph and upper right micrographs, respectively).
- FIG. 4 Silencing of eGFP in MDA-MB-231/GFP cell line treated with GLH-19 vesicles containing eGFP-siRNA.
- the breast cancer cell line MDA-MB-231 that stably express eGFP were exposed for 5 hours to GLH-19 vesicles containing egFP-siRNA. 72 hours after the exposure a very significant silencing of the eGFP gene was observed. No silencing was seen in cells exposed to empty vesicles (not shown).
- Figure 5 Biodistribution of siRNA-AF555 in organs from mice after i.v.
- AF-555 fluorescence administration of bolavesicles containing siRNA-AF555.
- GLH-19 vesicles containing AF555- siRNA were injected via the tail vein into mice and 30 minutes later mice were acrificed, organs collected and imaging for AF-555 fluorescence was performed. Bakground fluorescence was adjusted to show brown color and AF-555 fluorescence was adjusted to give green color. AF-555 fluorescence is seen only in gall bladder (left image), blood vessels (around the lung, see middle image) and thoughout the brain (right image). No fluorescence is seen in the liver at the 30 min time point nor in the lung.
- Compounds described herein can comprise one or more asymmetric centers, and thus can exist in various isomeric forms, e.g., enantiomers and/or diastereomers.
- the compounds described herein can be in the form of an individual enantiomer, diastereomer or geometric isomer, or can be in the form of a mixture of stereoisomers, including racemic mixtures and mixtures enriched in one or more stereoisomer.
- Isomers can be isolated from mixtures by methods known to those skilled in the art, including chiral high pressure liquid chromatography (HPLC) and the formation and crystallization of chiral salts; or preferred isomers can be prepared by asymmetric syntheses. See, for example, Jacques et ah,
- Ci_6 alkyl is intended to encompass, Ci, C 2 , C3, C 4 , C5, e, Ci-6, Ci-5, Ci-4, Ci-3, Ci-2, C 2 -6, C 2 -5, C 2 -4, C 2 -3, C 3 -6, C3-5, C3-4, C 4 -6, C 4 -5, and C5-6 alkyl.
- analogue means one analogue or more than one analogue.
- Alkyl refers to a radical of a straight-chain or branched saturated hydrocarbon group having from 1 to 20 carbon atoms (“Ci_2o alkyl”). In some embodiments, an alkyl group has 1 to 12 carbon atoms (“Ci_i2 alkyl”). In some embodiments, an alkyl group has 1 to 10 carbon atoms (“Ci_io alkyl”). In some embodiments, an alkyl group has 1 to 9 carbon atoms (“Ci_9 alkyl”). In some embodiments, an alkyl group has 1 to 8 carbon atoms (“Ci_8 alkyl”). In some embodiments, an alkyl group has 1 to 7 carbon atoms (“Ci_7 alkyl”). In some embodiments,
- an alkyl group has 1 to 6 carbon atoms ("Ci_6 alkyl", also referred to herein as "lower alkyl”). In some embodiments, an alkyl group has 1 to 5 carbon atoms (“Ci_5 alkyl”). In some embodiments, an alkyl group has 1 to 4 carbon atoms ("C1-4 alkyl”). In some embodiments, an alkyl group has 1 to 3 carbon atoms (“Ci_3 alkyl”). In some embodiments, an alkyl group has 1 to 2 carbon atoms (“Ci_2 alkyl”). In some embodiments, an alkyl group has 1 carbon atom (“Ci alkyl”).
- an alkyl group has 2 to 6 carbon atoms ("C2-6 alkyl”).
- Ci_6 alkyl groups include methyl (Ci), ethyl (C2), n-propyl (C 3 ), isopropyl (C 3 ), n-butyl (C 4 ), tert-butyl (C 4 ), sec-butyl (C 4 ), iso-butyl (C 4 ), n-pentyl (C5), 3-pentanyl (C5), amyl (C5), neopentyl (C5), 3-methyl-2-butanyl (C5), tertiary amyl (C5), and n-hexyl (Ce).
- alkyl groups include n-heptyl (C 7 ), n-octyl (C 8 ) and the like.
- each instance of an alkyl group is independently optionally substituted, i.e., unsubstituted (an "unsubstituted alkyl") or substituted (a "substituted alkyl") with one or more substituents; e.g., for instance from 1 to 5 substituents, 1 to 3 substituents, or 1 substituent.
- the alkyl group is unsubstituted Ci-w alkyl (e.g., -CH 3 ).
- the alkyl group is substituted Ci-10 alkyl.
- Alkylene refers to a substituted or unsubstituted alkyl group, as defined above, wherein two hydrogens are removed to provide a divalent radical.
- exemplary divalent alkylene groups include, but are not limited to, methylene (-CH 2 -), ethylene (-CH 2 CH 2 -), the propylene isomers (e.g. , -CH 2 CH 2 CH 2 - and -CH(CH 3 )CH 2 -) and the like.
- alkenyl refers to a radical of a straight-chain or branched hydrocarbon group having from 2 to 20 carbon atoms, one or more carbon-carbon double bonds, and no triple bonds ("C2-20 alkenyl”).
- an alkenyl group has 2 to 10 carbon atoms ("C2-10 alkenyl”).
- an alkenyl group has 2 to 9 carbon atoms ("C2-9 alkenyl”).
- an alkenyl group has 2 to 8 carbon atoms (“C2-8 alkenyl”).
- an alkenyl group has 2 to 7 carbon atoms (“C 2 _ 7 alkenyl”).
- an alkenyl group has 2 to 6 carbon atoms ("C 2 _6 alkenyl”). In some embodiments, an alkenyl group has 2 to 5 carbon atoms (“C 2 _s alkenyl”). In some embodiments, an alkenyl group has 2 to 4 carbon atoms alkenyl”). In some embodiments, an alkenyl group has 2 to 3 carbon atoms (“C 2 _3 alkenyl”). In some embodiments, an alkenyl group has 2 carbon atoms ("C 2 alkenyl”).
- the one or more carbon-carbon double bonds can be internal (such as in 2-butenyl) or terminal (such as in 1-butenyl).
- Examples of C2-4 alkenyl groups include ethenyl (C 2 ), 1- propenyl (C 3 ), 2-propenyl (C 3 ), 1-butenyl (C 4 ), 2-butenyl (C 4 ), butadienyl (C 4 ), and the like.
- Examples of C2-6 alkenyl groups include the aforementioned C2-4 alkenyl groups as well as pentenyl (C5), pentadienyl (C5), hexenyl (Ce), and the like. Additional examples of alkenyl include heptenyl (C 7 ), octenyl (C 8 ), octatrienyl (C 8 ), and the like.
- each instance of an alkenyl group is independently optionally substituted, i.e. , unsubstituted (an "unsubstituted alkenyl") or substituted (a "substituted alkenyl") with one or more substituents e.g., for instance from 1 to 5 substituents, 1 to 3 substituents, or 1 substituent.
- the alkenyl group is unsubstituted C 2 _ 10 alkenyl.
- the alkenyl group is substituted C 2 _ 10 alkenyl.
- alkenylene refers a substituted or unsubstituted alkenyl group, as defined above, wherein two hydrogens are removed to provide a divalent radical.
- Alkynyl refers to a radical of a straight-chain or branched hydrocarbon group having from 2 to 20 carbon atoms, one or more carbon-carbon triple bonds, and optionally one or more double bonds ("C2-2 0 alkynyl”).
- an alkynyl group has 2 to 10 carbon atoms ("C2-1 0 alkynyl”).
- an alkynyl group has 2 to 9 carbon atoms ("C2-9 alkynyl”).
- an alkynyl group has 2 to 8 carbon atoms (“C 2 - 8 alkynyl”).
- an alkynyl group has 2 to 7 carbon atoms ("C2-7 alkynyl”). In some embodiments, an alkynyl group has 2 to 6 carbon atoms ("C 2 _6 alkynyl”). In some embodiments, an alkynyl group has 2 to 5 carbon atoms (“C 2 _s alkynyl”). In some embodiments, an alkynyl group has 2 to 4 carbon atoms alkynyl"). In some embodiments, an alkynyl group has 2 to 3 carbon atoms (“C2-3 alkynyl”). In some embodiments, an alkynyl group has 2 carbon atoms ("C 2 alkynyl”).
- the one or more carbon-carbon triple bonds can be internal (such as in 2-butynyl) or terminal (such as in 1-butynyl).
- Examples of C2-4 alkynyl groups include, without limitation, ethynyl (C 2 ), 1-propynyl (C 3 ), 2-propynyl (C 3 ), 1-butynyl (C 4 ), 2-butynyl (C 4 ), and the like.
- Examples of C2-6 alkenyl groups include the aforementioned C2-4 alkynyl groups as well as pentynyl (C 5 ), hexynyl (Ce), and the like.
- alkynyl examples include heptynyl (C 7 ), octynyl (Cs), and the like.
- each instance of an alkynyl group is independently optionally substituted, i.e., unsubstituted (an "unsubstituted alkynyl") or substituted (a "substituted alkynyl") with one or more substituents; e.g., for instance from 1 to 5 substituents, 1 to 3 substituents, or 1 substituent.
- the alkynyl group is unsubstituted C 2 _ 10 alkynyl.
- the alkynyl group is substituted C2-10 alkynyl.
- Alkynylene refers a substituted or unsubstituted alkynyl group, as defined above, wherein two hydrogens are removed to provide a divalent radical.
- exemplary divalent alkynylene groups include, but are not limited to, ethynylene, propynylene, and the like.
- Aryl refers to a radical of a monocyclic or polycyclic (e.g., bicyclic or tricyclic)
- an aryl group has six ring carbon atoms (“C6 aryl”; e.g., phenyl).
- an aryl group has ten ring carbon atoms ("C 10 aryl”; e.g., naphthyl such as 1- naphthyl and 2-naphthyl).
- an aryl group has fourteen ring carbon atoms ("Ci4 aryl”; e.g., anthracyl).
- Aryl also includes ring systems wherein the aryl ring, as defined above, is fused with one or more carbocyclyl or heterocyclyl groups wherein the radical or point of attachment is on the aryl ring, and in such instances, the number of carbon atoms continue to designate the number of carbon atoms in the aryl ring system.
- Typical aryl groups include, but are not limited to, groups derived from aceanthrylene, acenaphthylene, acephenanthrylene, anthracene, azulene, benzene, chrysene, coronene, fluoranthene, fluorene, hexacene, hexaphene, hexalene, as-indacene, s-indacene, indane, indene, naphthalene, octacene, octaphene, octalene, ovalene, penta-2,4-diene, pentacene, pentalene, pentaphene, perylene, phenalene, phenanthrene, picene, pleiadene, pyrene, pyranthrene, rubicene, triphenylene, and trinaphthalene.
- aryl groups include phenyl, naphthyl, indenyl, and tetrahydronaphthyl.
- each instance of an aryl group is independently optionally substituted, i.e., unsubstituted (an "unsubstituted aryl") or substituted (a "substituted aryl") with one or more substituents.
- the aryl group is unsubstituted C6-i 4 aryl.
- the aryl group is substituted C6-i 4 aryl.
- one of R and R may be hydrogen and at least one of R and R is each independently selected from Ci-Cs alkyl, Ci-Cs haloalkyl, 4-10 membered heterocyclyl, alkanoyl, Ci-Cs alkoxy, heteroaryloxy, alkylamino, arylamino, heteroarylamino, NR 58 COR 59 , NR 58 SOR 59 R 58 S0 2 R 59 , COOalkyl, COOaryl, CONR 58 R 59 , CONR 58 OR 59 , NR 58 R 59 ,
- S0 2 NR 58 R 59 S-alkyl, SOalkyl, S0 2 alkyl, Saryl, SOaryl, S0 2 aryl; or R 56 and R 57 may be joined to form a cyclic ring (saturated or unsaturated) from 5 to 8 atoms, optionally containing one or more heteroatoms selected from the group N, O, or S.
- R 60 and R 61 are independently hydrogen, Ci-Cs alkyl, C1-C4 haloalkyl, C3-C1 0 cycloalkyl, 4-10 membered heterocyclyl, C6-C1 0 aryl, substituted C6-C1 0 aryl, 5-10 membered heteroaryl, or substituted 5-10 membered heteroaryl.
- fused aryl refers to an aryl having two of its ring carbon in common with a second aryl ring or with an aliphatic ring.
- Aralkyl is a subset of alkyl and aryl, as defined herein, and refers to an optionally substituted alkyl group substituted by an optionally substituted aryl group.
- Heteroaryl refers to a radical of a 5-10 membered monocyclic or bicyclic 4n+2 aromatic ring system (e.g., having 6 or 10 ⁇ electrons shared in a cyclic array) having ring carbon atoms and 1-4 ring heteroatoms provided in the aromatic ring system, wherein each heteroatom is independently selected from nitrogen, oxygen and sulfur ("5-10 membered heteroaryl").
- the point of attachment can be a carbon or nitrogen atom, as valency permits.
- Heteroaryl bicyclic ring systems can include one or more heteroatoms in one or both rings.
- Heteroaryl includes ring systems wherein the heteroaryl ring, as defined above, is fused with one or more carbocyclyl or heterocyclyl groups wherein the point of attachment is on the heteroaryl ring, and in such instances, the number of ring members continue to designate the number of ring members in the heteroaryl ring system.
- Heteroaryl also includes ring systems wherein the heteroaryl ring, as defined above, is fused with one or more aryl groups wherein the point of attachment is either on the aryl or heteroaryl ring, and in such instances, the number of ring members designates the number of ring members in the fused (aryl/heteroaryl) ring system.
- Bicyclic heteroaryl groups wherein one ring does not contain a heteroatom e.g., indolyl, quinolinyl, carbazolyl, and the like
- the point of attachment can be on either ring, i.e., either the ring bearing a heteroatom (e.g., 2-indolyl) or the ring that does not contain a heteroatom (e.g., 5-indolyl).
- a heteroaryl group is a 5-10 membered aromatic ring system having ring carbon atoms and 1-4 ring heteroatoms provided in the aromatic ring system, wherein each heteroatom is independently selected from nitrogen, oxygen, and sulfur ("5-10 membered heteroaryl").
- a heteroaryl group is a 5-8 membered aromatic ring system having ring carbon atoms and 1-4 ring heteroatoms provided in the aromatic ring system, wherein each heteroatom is independently selected from nitrogen, oxygen, and sulfur ("5-8 membered heteroaryl").
- a heteroaryl group is a 5-6 membered aromatic ring system having ring carbon atoms and 1-4 ring heteroatoms provided in the aromatic ring system, wherein each heteroatom is independently selected from nitrogen, oxygen, and sulfur ("5-6 membered heteroaryl").
- the 5-6 membered heteroaryl has 1-3 ring heteroatoms selected from nitrogen, oxygen, and sulfur.
- the 5-6 membered heteroaryl has 1-2 ring heteroatoms selected from nitrogen, oxygen, and sulfur.
- the 5-6 membered heteroaryl has 1 ring heteroatom selected from nitrogen, oxygen, and sulfur.
- each instance of a heteroaryl group is independently optionally substituted, i.e., unsubstituted (an "unsubstituted heteroaryl") or substituted (a "substituted heteroaryl") with one or more substituents.
- the heteroaryl group is unsubstituted 5-14 membered heteroaryl. In certain embodiments, the heteroaryl group is substituted 5-14 membered heteroaryl.
- Exemplary 5-membered heteroaryl groups containing one heteroatom include, without limitation, pyrrolyl, furanyl and thiophenyl.
- Exemplary 5-membered heteroaryl groups containing two heteroatoms include, without limitation, imidazolyl, pyrazolyl, oxazolyl, isoxazolyl, thiazolyl, and isothiazolyl.
- Exemplary 5-membered heteroaryl groups containing three heteroatoms include, without limitation, triazolyl, oxadiazolyl, and thiadiazolyl.
- Exemplary 5-membered heteroaryl groups containing four heteroatoms include, without limitation, tetrazolyl.
- Exemplary 6-membered heteroaryl groups containing one heteroatom include, without limitation, pyridinyl.
- Exemplary 6-membered heteroaryl groups containing two heteroatoms include, without limitation, pyridazinyl, pyrimidinyl, and pyrazinyl.
- Exemplary 6- membered heteroaryl groups containing three or four heteroatoms include, without limitation, triazinyl and tetrazinyl, respectively.
- Exemplary 7-membered heteroaryl groups containing one heteroatom include, without limitation, azepinyl, oxepinyl, and thiepinyl.
- Exemplary 5,6- bicyclic heteroaryl groups include, without limitation, indolyl, isoindolyl, indazolyl,
- benzotriazolyl benzothiophenyl, isobenzothiophenyl, benzofuranyl, benzoisofuranyl, benzimidazolyl, benzoxazolyl, benzisoxazolyl, benzoxadiazolyl, benzthiazolyl, benzisothiazolyl, benzthiadiazolyl, indolizinyl, and purinyl.
- Exemplary 6,6-bicyclic heteroaryl groups include, without limitation, naphthyridinyl, pteridinyl, quinolinyl, isoquinolinyl, cinnolinyl, quinoxalinyl, phthalazinyl, and quinazolinyl.
- each Y is selected from carbonyl, N, NR , O, and S; and R is independently hydrogen, Ci-Cs alkyl, C3-C1 0 cycloalkyl, 4-10 membered heterocyclyl, C6-C1 0 aryl, and 5-10 membered heteroaryl.
- R is independently hydrogen, Ci-Cs alkyl, C3-C1 0 cycloalkyl, 4-10 membered heterocyclyl, C6-C1 0 aryl, and 5-10 membered heteroaryl. Examples of representative aryl having hetero atoms containing substitution
- each W is selected from C(R ) 2 , NR , O, and S; and each Y is selected from carbonyl, NR 66 , O and S; and R 66 is independently hydrogen, Ci-C 8 alkyl, C3-C10 cycloalkyl, 4-10 membered heterocyclyl, C6-C1 0 aryl, and 5- 10 membered heteroaryl.
- Heteroaralkyl is a subset of alkyl and heteroaryl, as defined herein, and refers to an optionally substituted alkyl group substituted by an optionally substituted heteroaryl group.
- Carbocyclyl or “carbocyclic” refers to a radical of a non-aromatic cyclic hydrocarbon group having from 3 to 10 ring carbon atoms ("C 3 _io carbocyclyl") and zero heteroatoms in the non-aromatic ring system.
- a carbocyclyl group has 3 to 8 ring carbon atoms ("C 3 _s carbocyclyl”).
- a carbocyclyl group has 3 to 6 ring carbon atoms ("C 3 -6 carbocyclyl”).
- a carbocyclyl group has 3 to 6 ring carbon atoms (“C 3 -6 carbocyclyl”).
- a carbocyclyl group has 5 to 10 ring carbon atoms ("Cs-io carbocyclyl").
- Exemplary C3-6 carbocyclyl groups include, without limitation, cyclopropyl (C 3 ), cyclopropenyl (C 3 ), cyclobutyl (C 4 ), cyclobutenyl (C 4 ), cyclopentyl (C5), cyclopentenyl (C5), cyclohexyl (Ce), cyclohexenyl (Ce), cyclohexadienyl (Ce), and the like.
- Exemplary C 3 _s carbocyclyl groups include, without limitation, the aforementioned C 3 -6 carbocyclyl groups as well as cycloheptyl (C 7 ), cycloheptenyl (C 7 ), cycloheptadienyl (C 7 ), cycloheptatrienyl (C 7 ), cyclooctyl (C 8 ), cyclooctenyl (C 8 ), bicyclo[2.2.1 ]heptanyl (C 7 ), bicyclo[2.2.2]octanyl (C 8 ), and the like.
- Exemplary C 3 _io carbocyclyl groups include, without limitation, the aforementioned C 3 _s carbocyclyl groups as well as cyclononyl (C 9 ), cyclononenyl (C 9 ), cyclodecyl (Cio), cyclodecenyl (Cio), octahydro-lH-indenyl (C 9 ), decahydronaphthalenyl (Cio), spiro[4.5]decanyl (Cio), and the like.
- the carbocyclyl group is either monocyclic (“monocyclic carbocyclyl”) or contain a fused, bridged or spiro ring system such as a bicyclic system (“bicyclic carbocyclyl”) and can be saturated or can be partially unsaturated.
- “Carbocyclyl” also includes ring systems wherein the carbocyclyl ring, as defined above, is fused with one or more aryl or heteroaryl groups wherein the point of attachment is on the carbocyclyl ring, and in such instances, the number of carbons continue to designate the number of carbons in the carbocyclic ring system.
- each instance of a carbocyclyl group is independently optionally substituted, i.e. , unsubstituted (an "unsubstituted carbocyclyl") or substituted (a "substituted carbocyclyl") with one or more substituents.
- the carbocyclyl group is unsubstituted C3_io carbocyclyl.
- the carbocyclyl group is a substituted C3_io carbocyclyl.
- “carbocyclyl” is a monocyclic, saturated carbocyclyl group having from 3 to 10 ring carbon atoms ("C3_io cycloalkyl”). In some embodiments, a cycloalkyl group has 3 to 8 ring carbon atoms ("C3_s cycloalkyl”). In some embodiments, a cycloalkyl group has 3 to 6 ring carbon atoms (“C3_6 cycloalkyl”). In some embodiments, a cycloalkyl group has 5 to 6 ring carbon atoms ("C5_6 cycloalkyl").
- a cycloalkyl group has 5 to 10 ring carbon atoms ("Cs-io cycloalkyl").
- C5-6 cycloalkyl groups include cyclopentyl (C 5 ) and cyclohexyl (C 5 ).
- Examples of C3-6 cycloalkyl groups include the aforementioned C5-6 cycloalkyl groups as well as cyclopropyl (C 3 ) and cyclobutyl (C 4 ).
- C3_s cycloalkyl groups include the aforementioned C3-6 cycloalkyl groups as well as cycloheptyl (C7) and cyclooctyl (C 8 ). Unless otherwise specified, each instance of a cycloalkyl group is independently unsubstituted (an "unsubstituted cycloalkyl") or substituted (a
- substituted cycloalkyl with one or more substituents.
- the cycloalkyl group is unsubstituted C3_io cycloalkyl. In certain embodiments, the cycloalkyl group is substituted C3_io cycloalkyl.
- Heterocyclyl or “heterocyclic” refers to a radical of a 3- to 10-membered non- aromatic ring system having ring carbon atoms and 1 to 4 ring heteroatoms, wherein each heteroatom is independently selected from nitrogen, oxygen, sulfur, boron, phosphorus, and silicon ("3-10 membered heterocyclyl").
- the point of attachment can be a carbon or nitrogen atom, as valency permits.
- a heterocyclyl group can either be monocyclic ("monocyclic heterocyclyl”) or a fused, bridged or spiro ring system such as a bicyclic system ("bicyclic heterocyclyl”), and can be saturated or can be partially unsaturated.
- Heterocyclyl bicyclic ring systems can include one or more heteroatoms in one or both rings.
- Heterocyclyl also includes ring systems wherein the heterocyclyl ring, as defined above, is fused with one or more carbocyclyl groups wherein the point of attachment is either on the carbocyclyl or heterocyclyl ring, or ring systems wherein the heterocyclyl ring, as defined above, is fused with one or more aryl or heteroaryl groups, wherein the point of attachment is on the heterocyclyl ring, and in such instances, the number of ring members continue to designate the number of ring members in the heterocyclyl ring system.
- each instance of heterocyclyl is independently optionally substituted, i. e.
- the heterocyclyl group is unsubstituted 3-10 membered heterocyclyl. In certain embodiments, the heterocyclyl group is substituted 3-10 membered heterocyclyl.
- a heterocyclyl group is a 5-10 membered non-aromatic ring system having ring carbon atoms and 1-4 ring heteroatoms, wherein each heteroatom is independently selected from nitrogen, oxygen, sulfur, boron, phosphorus, and silicon ("5-10 membered heterocyclyl").
- a heterocyclyl group is a 5-8 membered non- aromatic ring system having ring carbon atoms and 1-4 ring heteroatoms, wherein each heteroatom is independently selected from nitrogen, oxygen, and sulfur ("5-8 membered heterocyclyl").
- a heterocyclyl group is a 5-6 membered non-aromatic ring system having ring carbon atoms and 1-4 ring heteroatoms, wherein each heteroatom is independently selected from nitrogen, oxygen, and sulfur ("5-6 membered heterocyclyl").
- the 5-6 membered heterocyclyl has 1-3 ring heteroatoms selected from nitrogen, oxygen, and sulfur.
- the 5-6 membered heterocyclyl has 1-2 ring heteroatoms selected from nitrogen, oxygen, and sulfur.
- the 5-6 membered heterocyclyl has one ring heteroatom selected from nitrogen, oxygen, and sulfur.
- Exemplary 3-membered heterocyclyl groups containing one heteroatom include, without limitation, azirdinyl, oxiranyl, thiorenyl.
- Exemplary 4-membered heterocyclyl groups containing one heteroatom include, without limitation, azetidinyl, oxetanyl and thietanyl.
- Exemplary 5-membered heterocyclyl groups containing one heteroatom include, without limitation, tetrahydrofuranyl, dihydrofuranyl, tetrahydrothiophenyl, dihydrothiophenyl, pyrrolidinyl, dihydropyrrolyl and pyrrolyl-2,5-dione.
- Exemplary 5-membered heterocyclyl groups containing two heteroatoms include, without limitation, dioxolanyl, oxasulfuranyl, disulfuranyl, and oxazolidin-2-one.
- Exemplary 5-membered heterocyclyl groups containing three heteroatoms include, without limitation, triazolinyl, oxadiazolinyl, and thiadiazolinyl.
- Exemplary 6-membered heterocyclyl groups containing one heteroatom include, without limitation, piperidinyl, tetrahydropyranyl, dihydropyridinyl, and thianyl.
- Exemplary 6- membered heterocyclyl groups containing two heteroatoms include, without limitation, piperazinyl, morpholinyl, dithianyl, dioxanyl.
- Exemplary 6-membered heterocyclyl groups containing two heteroatoms include, without limitation, triazinanyl.
- Exemplary 7-membered heterocyclyl groups containing one heteroatom include, without limitation, azepanyl, oxepanyl and thiepanyl.
- Exemplary 8-membered heterocyclyl groups containing one heteroatom include, without limitation, azocanyl, oxecanyl and thiocanyl.
- Exemplary 5-membered heterocyclyl groups fused to a Ce aryl ring include, without limitation, indolinyl, isoindolinyl, dihydrobenzofuranyl, dihydrobenzothienyl, benzoxazolinonyl, and the like.
- Exemplary 6-membered heterocyclyl groups fused to an aryl ring include, without limitation, tetrahydroquinolinyl, tetrahydroisoquinolinyl, and the like.
- each W is selected from CR 0 ', 0( ⁇ ?' ⁇ , NR & / , O, and S; and each Y is selected from NR 67 , O, and S; and R 67 is independently hydrogen, Ci-Cs alkyl, C3-C 10 cycloalkyl, 4-10 membered heterocyclyl, C6-C 10 aryl, 5-10 membered heteroaryl.
- heterocyclyl rings may be optionally substituted with one or more substituents selected from the group consisting of the group consisting of acyl, acylamino, acyloxy, alkoxy, alkoxycarbonyl, alkoxycarbonylamino, amino, substituted amino, aminocarbonyl (carbamoyl or amido), aminocarbonylamino, aminosulfonyl, sulfonylamino, aryl, aryloxy, azido, carboxyl, cyano, cycloalkyl, halogen, hydroxy, keto, nitro, thiol, -S-alkyl, -S-aryl, -S(0)-alkyl,-S(0)-aryl, -S(0) 2 -alkyl, and -S(0) 2 - aryl.
- Substituting groups include carbonyl or thiocarbonyl which provide, for example, lactam and urea derivatives.
- Hetero when used to describe a compound or a group present on a compound means that one or more carbon atoms in the compound or group have been replaced by a nitrogen, oxygen, or sulfur heteroatom. Hetero may be applied to any of the hydrocarbyl groups described above such as alkyl, e.g., heteroalkyl, cycloalkyl, e.g., heterocyclyl, aryl, e.g,.
- heteroaryl cycloalkenyl, e.g,. cycloheteroalkenyl, and the like having from 1 to 5, and particularly from 1 to 3 heteroatoms.
- Acyl refers to a radical -C(0)R 20 , where R 20 is hydrogen, substituted or unsubstitued alkyl, substituted or unsubstitued alkenyl, substituted or unsubstitued alkynyl, substituted or unsubstitued carbocyclyl, substituted or unsubstituted heterocyclyl, substituted or unsubstituted aryl, or substituted or unsubstitued heteroaryl, as defined herein.
- “Alkanoyl” is an acyl group wherein R 20 is a group other than hydrogen.
- R 21 is Ci-Cs alkyl, substituted with halo or hydroxy; or C3-C1 0 cycloalkyl, 4-10 membered heterocyclyl, C6-C1 0 aryl, arylalkyl, 5-10 membered heteroaryl or heteroarylalkyl, each of which is substituted with unsubstituted C1-C4 alkyl, halo, unsubstituted C1-C4 alkoxy, unsubstituted C1-C4 haloalkyl, unsubstituted C1-C4 hydroxyalkyl, or unsubstituted C1-C4 haloalkoxy or hydroxy.
- Acylamino refers to a radical -NR 22 C(0)R 23 , where each instance of R 22 and
- R23 is independently hydrogen, substituted or unsubstitued alkyl, substituted or unsubstitued alkenyl, substituted or unsubstitued alkynyl, substituted or unsubstitued carbocyclyl, substituted or unsubstituted heterocyclyl, substituted or unsubstituted aryl, or substituted or unsubstitued heteroaryl,, as defined herein, or R 22 is an amino protecting group.
- acylamino groups include, but are not limited to, formylamino, acetylamino, cyclohexylcarbonylamino, cyclohexylmethyl-carbonylamino, benzoylamino and benzylcarbonylamino.
- acylamino groups are -NR 24 C(0)-Ci-C 8 alkyl, -NR 24 C(O)-(CH 2 ) t (C 6 -Ci 0 aryl), - NR 24 C(O)-(CH 2 ) t (5-10 membered heteroaryl), -NR 24 C(O)-(CH 2 ) t (C 3 -Ci 0 cycloalkyl), and - NR 24 C(O)-(CH 2 ) t (4-10 membered heterocyclyl), wherein t is an integer from 0 to 4, and each R 24 independently represents H or Ci-Cs alkyl.
- R 25 is H, Ci-Cs alkyl, substituted with halo or hydroxy; C3-C1 0 cycloalkyl, 4-10 membered heterocyclyl, C6-C1 0 aryl, arylalkyl, 5-10 membered heteroaryl or heteroarylalkyl, each of which is substituted with unsubstituted C1-C4 alkyl, halo, unsubstituted C1-C4 alkoxy, unsubstituted C1-C4 haloalkyl, unsubstituted C1-C4 hydroxyalkyl, or unsubstituted C1-C4 haloalkoxy or hydroxy; and R 26 is H, Ci-Cs alkyl, substituted with halo or hydroxy;
- C3-C1 0 cycloalkyl 4-10 membered heterocyclyl, C6-C1 0 aryl, arylalkyl, 5-10 membered heteroaryl or heteroa r yl a lkyl, each of which is substi t ut e d with unsubstituted C1-C4 alkyl, halo, unsubstituted C1-C4 alkoxy, unsubstituted C1-C4 haloalkyl, unsubstituted C1-C4 hydroxyalkyl, or unsubstituted C1-C4 haloalkoxy or hydroxyl; provided that at least one of R 25 and R 26 is other than H.
- Acyloxy refers to a radical -OC(0)R 27 , where R 27 is hydrogen, substituted or unsubstitued alkyl, substituted or unsubstitued alkenyl, substituted or unsubstituted alkynyl, substituted or unsubstituted carbocyclyl, substituted or unsubstituted heterocyclyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl, as defined herein.
- Representative examples include, but are not limited to, formyl, acetyl, cyclohexylcarbonyl, cyclohexylmethylcarbonyl, benzoyl and benzylcarbonyl.
- R is Ci-Cs alkyl, substituted with halo or hydroxy; C3-C1 0 cycloalkyl, 4-10 membered heterocyclyl, C6-C1 0 aryl, arylalkyl, 5-10 membered heteroaryl or heteroarylalkyl, each of which is substituted with unsubstituted C1-C4 alkyl, halo, unsubstituted C1-C4 alkoxy, unsubstituted C1-C4 haloalkyl, unsubstituted C1-C4 hydroxyalkyl, or unsubstituted C1-C4 haloalkoxy or hydroxy.
- Alkoxy refers to the group -OR 29 where R 29 is substituted or unsubstituted alkyl, substituted or unsubstituted alkenyl, substituted or unsubstituted alkynyl, substituted or unsubstituted carbocyclyl, substituted or unsubstituted heterocyclyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl.
- Particular alkoxy groups are methoxy, ethoxy, n- propoxy, isopropoxy, n-butoxy, tert-butoxy, sec-butoxy, n-pentoxy, n-hexoxy, and 1,2- dimethylbutoxy.
- Particular alkoxy groups are lower alkoxy, i.e. with between 1 and 6 carbon atoms. Further particular alkoxy groups have between 1 and 4 carbon atoms.
- R 29 is a group that has 1 or more substituents, for instance, from 1 to 5 substituents, and particularly from 1 to 3 substituents, in particular 1 substituent, selected from the group consisting of amino, substituted amino, C6-C1 0 aryl, aryloxy, carboxyl, cyano, C3-C1 0 cycloalkyl, 4-10 membered heterocyclyl, halogen, 5-10 membered heteroaryl, hydroxyl, nitro, thioalkoxy, thioaryloxy, thiol, alkyl-S(O)-, aryl-S(O)-, alkyl-S(0) 2 - and aryl-S(0)2-.
- substituents for instance, from 1 to 5 substituents, and particularly from 1 to 3 substituents, in particular 1 substituent, selected from the group consisting of amino, substituted amino, C6-C1 0 aryl, aryloxy, carboxyl, cyano, C3-C1
- Exemplary 'substituted alkoxy' groups include, but are not limited to, -O- (CH 2 ) t (C 6 -Cio aryl), -O-(CH 2 ) t (5-10 membered heteroaryl), -0-(CH 2 ) t (C 3 -Cio cycloalkyl), and - O-(CH2)t(4-10 membered heterocyclyl), wherein t is an integer from 0 to 4 and any aryl, heteroaryl, cycloalkyl or heterocyclyl groups present, may themselves be substituted by unsubstituted C1-C4 alkyl, halo, unsubstituted C1-C4 alkoxy, unsubstituted C1-C4 haloalkyl, unsubstituted C1-C4 hydroxyalkyl, or unsubstituted C1-C4 haloalkoxy or hydroxy.
- Particular exemplary 'substituted alkoxy' groups are -OCF 3 , -OCH 2 CF 3 , -OCH 2 Ph, -OCH 2 -cyclopropyl, - OCH 2 CH 2 OH, and -OCH 2 CH 2 NMe 2 .
- Amino refers to the radical -NH 2 .
- Substituted amino refers to an amino group of the formula -N(R 38 ) 2 wherein R 38 is hydrogen, substituted or unsubstituted alkyl, substituted or unsubstitued alkenyl, substituted or unsubstitued alkynyl, substituted or unsubstitued carbocyclyl, substituted or unsubstituted heterocyclyl, substituted or unsubstituted aryl, substituted or unsubstitued heteroaryl, or an amino protecting group, wherein at least one of R 38 is not a hydrogen.
- each R 38 is independently selected from: hydrogen, Ci-Cs alkyl, C3-C8 alkenyl, C3-C8 alkynyl, C6-C1 0 aryl, 5-10 membered heteroaryl, 4-10 membered heterocyclyl, or C3-C1 0 cycloalkyl; or Ci-Cs alkyl, substituted with halo or hydroxy; C3-C8 alkenyl, substituted with halo or hydroxy; C3-C8 alkynyl, substituted with halo or hydroxy, or -(CH 2 ) t (C 6 -Cio aryl), -(CH 2 ) t (5-10 membered heteroaryl), - (CH 2 ) t (C 3 -Cio cycloalkyl), or -(CH 2 ) t (4-10 membered heterocyclyl), wherein t is an integer between 0 and 8, each of which is substituted by unsub
- Exemplary 'substituted amino' groups are -NR 39 -Ci-C 8 alkyl, -NR 39 -(CH 2 ) t (C 6 -
- each R 39 independently represents H or Ci-Cs alkyl and any alkyl groups present, may themselves be substituted by halo, substituted or unsubstituted amino, or hydroxy; and any aryl, heteroaryl, cycloalkyl, or heterocyclyl groups present, may themselves be substituted by unsubstituted C1-C4 alkyl, halo, unsubstituted C1-C4 alkoxy, unsubstituted C1-C4 haloalkyl, unsubstituted C1-C4 hydroxyalkyl, or unsubstituted C1
- substituted amino includes the groups alkylamino, substituted alkylamino, alkylarylamino, substituted alkylarylamino, arylamino, substituted arylamino, dialkylamino, and substituted dialkylamino as defined below.
- Substituted amino encompasses both monosubstituted amino and disubstituted amino groups.
- Carbamoyl or “amido” refers to the radical -C(0)NH 2 .
- Substituted carbamoyl or “substituted amido” refers to the radical -C(0)N(R 62 ) 2 wherein each R 62 is independently hydrogen, substituted or unsubstituted alkyl, substituted or unsubstitued alkenyl, substituted or unsubstitued alkynyl, substituted or unsubstitued carbocyclyl, substituted or unsubstituted heterocyclyl, substituted or unsubstituted aryl, substituted or unsubstitued heteroaryl, or an amino protecting group, wherein at least one of R 62 is not a hydrogen.
- R 62 is selected from H, Ci-Cs alkyl, C 3 -C1 0 cycloalkyl, 4-10 membered heterocyclyl, C6-C1 0 aryl, aralkyl, 5-10 membered heteroaryl, and heteroaralkyl; or Ci-Cs alkyl substituted with halo or hydroxy; or C 3 -C1 0 cycloalkyl, 4-10 membered heterocyclyl, C6-C1 0 aryl, aralkyl, 5-10 membered heteroaryl, or heteroaralkyl, each of which is substituted by unsubstituted C1-C4 alkyl, halo, unsubstituted C1-C4 alkoxy, unsubstituted C1-C4 haloalkyl, unsubstituted C1-C4 hydroxyalkyl, or unsubstituted C1-C4 haloalkoxy or hydroxy; provided
- Exemplary 'substituted carbamoyl' groups include, but are not limited to, -C(O)
- Cyano refers to the radical -CN.
- Halo or "halogen” refers to fluoro (F), chloro (CI), bromo (Br), and iodo (I).
- the halo group is either fluoro or chloro. In further embodiments, the halo group is iodo.
- Haldroxy refers to the radical -OH.
- Niro refers to the radical -N0 2 .
- Cycloalkylalkyl refers to an alkyl radical in which the alkyl group is substituted with a cycloalkyl group.
- Typical cycloalkylalkyl groups include, but are not limited to, cyclopropylmethyl, cyclobutylmethyl, cyclopentylmethyl, cyclohexylmethyl, cycloheptylmethyl, cyclooctylmethyl, cyclopropylethyl, cyclobutylethyl, cyclopentylethyl, cyclohexylethyl, cycloheptylethyl, and cyclooctylethyl, and the like.
- Heterocyclylalkyl refers to an alkyl radical in which the alkyl group is substituted with a heterocyclyl group.
- Typical heterocyclylalkyl groups include, but are not limited to, pyrrolidinylmethyl, piperidinylmethyl, piperazinylmethyl, morpholinylmethyl, pyrrolidinylethyl, piperidinylethyl, piperazinylethyl, morpholinylethyl, and the like.
- Cycloalkenyl refers to substituted or unsubstituted carbocyclyl group having from 3 to 10 carbon atoms and having a single cyclic ring or multiple condensed rings, including fused and bridged ring systems and having at least one and particularly from 1 to 2 sites of olefinic unsaturation.
- Such cycloalkenyl groups include, by way of example, single ring structures such as cyclohexenyl, cyclopentenyl, cyclopropenyl, and the like.
- Fused cycloalkenyl refers to a cycloalkenyl having two of its ring carbon atoms in common with a second aliphatic or aromatic ring and having its olefinic unsaturation located to impart aromaticity to the cycloalkenyl ring.
- Ethylene refers to substituted or unsubstituted -(C-C)-.
- Neitrogen-containing heterocyclyl means a 4- to 7- membered non- aromatic cyclic group containing at least one nitrogen atom, for example, but without limitation, morpholine, piperidine (e.g. 2-piperidinyl, 3-piperidinyl and 4-piperidinyl), pyrrolidine (e.g. 2- pyrrolidinyl and 3-pyrrolidinyl), azetidine, pyrrolidone, imidazoline, imidazolidinone, 2- pyrazoline, pyrazolidine, piperazine, and N-alkyl piperazines such as N-methyl piperazine.
- piperidine e.g. 2-piperidinyl, 3-piperidinyl and 4-piperidinyl
- pyrrolidine e.g. 2- pyrrolidinyl and 3-pyrrolidinyl
- azetidine pyrrolidone
- imidazoline imidazolidinone
- 2- pyrazoline imidazo
- Particular examples include azetidine, piperidone and piperazone.
- Alkyl, alkenyl, alkynyl, carbocyclyl, heterocyclyl, aryl, and heteroaryl groups, as defined herein, are optionally substituted (e.g., "substituted” or "unsubstituted” alkyl,
- substituted means that at least one hydrogen present on a group (e.g., a carbon or nitrogen atom) is replaced with a permissible substituent, e.g., a substituent which upon substitution results in a stable compound, e.g., a compound which does not spontaneously undergo transformation such as by rearrangement, cyclization, elimination, or other reaction.
- a "substituted” group has a substituent at one or more substitutable positions of the group, and when more than one position in any given structure is substituted, the substituent is either the same or different at each position.
- substituted is contemplated to include substitution with all permissible substituents of organic compounds, any of the substituents described herein that results in the formation of a stable compound.
- the present invention contemplates any and all such combinations in order to arrive at a stable compound.
- heteroatoms such as nitrogen may have hydrogen substituents and/or any suitable substituent as described herein which satisfy the valencies of the heteroatoms and results in the formation of a stable moiety.
- Exemplary carbon atom substituents include, but are not limited to, halogen, -CN,
- each instance of R aa is, independently, selected from Ci_io alkyl, Ci-w perhaloalkyl, C 2 - 10 alkenyl, C 2 - 10 alkynyl, C 3 _io carbocyclyl, 3-14 membered heterocyclyl, C6-i 4 aryl, and 5-14 membered heteroaryl, or two R aa groups are joined to form a 3-14 membered heterocyclyl or 5- 14 membered heteroaryl ring, wherein each alkyl, alkenyl, alkynyl, carbocyclyl, heterocyclyl, aryl, and heteroaryl is independently substituted with 0, 1, 2, 3, 4, or 5 R dd groups;
- each instance of R cc is, independently, selected from hydrogen, Ci_io alkyl, Ci_io perhaloalkyl, C 2 _io alkenyl, C 2 _io alkynyl, C 3 _io carbocyclyl, 3-14 membered heterocyclyl, C6-i 4 aryl, and 5-14 membered heteroaryl, or two R cc groups are joined to form a 3-14 membered heterocyclyl or 5- 14 membered heteroaryl ring, wherein each alkyl, alkenyl, alkynyl, carbocyclyl, heterocyclyl, aryl, and heteroaryl is independently substituted with 0, 1, 2, 3, 4, or 5 R dd groups;
- each instance of R ff is, independently, selected from hydrogen, Ci_6 alkyl, Ci_6 perhaloalkyl, d-6 alkenyl, C2-6 alkynyl, C 3 _io carbocyclyl, 3-10 membered heterocyclyl, C6-10 aryl and 5-10
- R ss is independently, halogen, -CN, -N0 2 , -N 3 , -S0 2 H, -SO 3 H, -OH, -OC 1-6 alkyl, -ON(d_ 6 alkyl) 2 , -N(d_ 6 alkyl) 2 , -N(d_ 6 alkyl) 3 + X- -NH(d_ 6 alkyl ⁇ X , -NH 2 (d_ 6 alkyl) + X ⁇ , -NH 3 + X ⁇ , -N(OCi ⁇ alkyi)(Ci-
- a "counterion” or “anionic counterion” is a negatively charged group associated with a cationic quaternary amino group in order to maintain electronic neutrality.
- exemplary counterions include halide ions (e.g., F “ , CI “ , Br “ , ⁇ ), N0 3 ⁇ , C10 4 , OFT, H 2 P0 4 HS0 4 sulfonate ions (e.g., methansulfonate, trifluoromethanesulfonate, p-toluenesulfonate, benzenesulfonate, 10-camphor sulfonate, naphthalene-2-sulfonate, naphthalene- 1 -sulfonic acid-5-sulfonate, ethan-1 -sulfonic acid-2-sulfonate, and the like), and carboxylate ions (e.g., acetate, ethanoate, propanoate,
- Nitrogen atoms can be substituted or unsubstituted as valency permits, and include primary, secondary, tertiary, and quarternary nitrogen atoms.
- R aa , R bb , R cc and R dd are as defined above.
- the substituent present on a nitrogen atom is a nitrogen protecting group (also referred to as an amino protecting group).
- Nitrogen protecting groups are well known in the art and include those described in detail in Protecting Groups in Organic Synthesis, T. W. Greene and P. G. M. Wuts, 3 rd edition, John Wiley & Sons, 1999, incorporated herein by reference.
- Nitrogen protecting groups such as carbamate groups include, but are not limited to, methyl carbamate, ethyl carbamante, 9-fluorenylmethyl carbamate (Fmoc), 9-(2-sulfo)fluorenylmethyl carbamate, 9-(2,7-dibromo)fluoroenylmethyl carbamate, 2,7-di-?-butyl-[9-(10, 10-dioxo-lO, 10, 10, 10-tetrahydrothioxanthyl)] methyl carbamate (DBD- Tmoc), 4-methoxyphenacyl carbamate (Phenoc), 2,2,2-trichloroethyl carbamate (Troc), 2- trimethylsilylethyl carbamate (Teoc), 2-phenylethyl carbamate (hZ), l-(l-adamantyl)-l-
- Nitrogen protecting groups such as sulfonamide groups include, but are not limited to, -toluenesulfonamide (Ts), benzenesulfonamide, 2,3,6,-trimethyl-4- methoxybenzenesulfonamide (Mtr), 2,4,6-trimethoxybenzenesulfonamide (Mtb), 2,6-dimethyl- 4-methoxybenzenesulfonamide (Pme), 2,3,5, 6-tetramethyl ⁇ -methoxybenzenesulfonamide (Mte), 4-methoxybenzenesulfonamide (Mbs), 2,4,6-trimethylbenzenesulfonamide (Mts), 2,6- dimethoxy-4-methy lbenzenesulfonamide (iMds), 2,2,5,7, 8-pentamethy lchroman-6- sulfonamide (P
- nitrogen protecting groups include, but are not limited to, phenothiazinyl-
- diphenylphosphinamide Dpp
- dimethylthiophosphinamide Mpt
- diphenylthiophosphinamide Ppt
- dialkyl phosphoramidates dibenzyl phosphoramidate, diphenyl phosphoramidate
- benzenesulfenamide o-nitrobenzenesulfenamide (Nps)
- 2,4-dinitrobenzenesulfenamide pentachlorobenzenesulfenamide, 2-nitro ⁇ l-methoxybenzenesulfenamide
- the substituent present on an oxygen atom is an oxygen protecting group (also referred to as a hydroxyl protecting group).
- Oxygen protecting groups are well known in the art and include those described in detail in Protecting Groups in Organic Synthesis, T. W. Greene and P. G. M. Wuts, 3 rd edition, John Wiley & Sons, 1999, incorporated herein by reference.
- oxygen protecting groups include, but are not limited to, methyl, methoxylmethyl (MOM), methylthiomethyl (MTM), ?-butylthiomethyl,
- benzisothiazolyl S,S-dioxido trimethylsilyl (TMS), triethylsilyl (TES), triisopropylsilyl (TIPS), dimethylisopropylsilyl (IPDMS), diethylisopropylsilyl (DEIPS), dimethylthexylsilyl, t- butyldimethylsilyl (TBDMS), ?-butyldiphenylsilyl (TBDPS), tribenzylsilyl, tri-p-xylylsilyl, triphenylsilyl, diphenylmethylsilyl (DPMS), £-butylmethoxyphenylsilyl (TBMPS), formate, benzoylformate, acetate, chloroacetate, dichloroacetate, trichloroacetate, trifluoroacetate, methoxyacetate, triphenylmethoxyacetate, phenoxyacetate, -chlorophenoxya
- the substituent present on an sulfur atom is an sulfur protecting group (also referred to as a thiol protecting group).
- Sulfur protecting groups are well known in the art and include those described in detail in Protecting Groups in Organic Synthesis, T. W. Greene and P. G. M. Wuts, 3 rd edition, John Wiley & Sons, 1999, incorporated herein by reference.
- “Pharmaceutically acceptable” means approved or approvable by a regulatory agency of the Federal or a state government or the corresponding agency in countries other than the United States, or that is listed in the U.S. Pharmacopoeia or other generally recognized pharmacopoeia for use in animals, and more particularly, in humans.
- “Pharmaceutically acceptable salt” refers to a salt of a compound of the invention that is pharmaceutically acceptable and that possesses the desired pharmacological activity of the parent compound.
- such salts are non-toxic may be inorganic or organic acid addition salts and base addition salts.
- such salts include: (1) acid addition salts, formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like; or formed with organic acids such as acetic acid, propionic acid, hexanoic acid, cyclopentanepropionic acid, glycolic acid, pyruvic acid, lactic acid, malonic acid, succinic acid, malic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, 3-(4-hydroxybenzoyl) benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, 1,2-ethane-disulfonic acid, 2 -hydroxy ethanesulfonic acid, benzenesulfonic acid, 4-chlorobenzenesulfonic acid, 2-naphthalenesulfonic acid, 4-toluenesul,
- Salts further include, by way of example only, sodium, potassium, calcium, magnesium, ammonium, tetraalkylammonium, and the like; and when the compound contains a basic functionality, salts of non toxic organic or inorganic acids, such as hydrochloride, hydrobromide, tartrate, mesylate, acetate, maleate, oxalate and the like.
- pharmaceutically acceptable cation refers to an acceptable cationic counter-ion of an acidic functional group. Such cations are exemplified by sodium, potassium, calcium, magnesium, ammonium, tetraalkylammonium cations, and the like (see, e.g., Berge, et ah, J. Pharm. Sci. 66(1): 1-79 (Jan.'77).
- “Pharmaceutically acceptable vehicle” refers to a diluent, adjuvant, excipient or carrier with which a compound of the invention is administered.
- metabolically acceptable metabolically cleavable group refers to a group which is cleaved in vivo to yield the parent molecule of the structural Formula indicated herein.
- Examples of metabolically cleavable groups include -COR, -COOR,-CONRR and -CH 2 OR radicals, where R is selected independently at each occurrence from alkyl, trialkylsilyl, carbocyclic aryl or carbocyclic aryl substituted with one or more of alkyl, halogen, hydroxy or alkoxy.
- Specific examples of representative metabolically cleavable groups include acetyl, methoxycarbonyl, benzoyl, methoxymethyl and trimethylsilyl groups.
- Prodrugs refers to compounds, including derivatives of the compounds of the invention, which have cleavable groups and become by solvolysis or under physiological conditions the compounds of the invention that are pharmaceutically active in vivo. Such examples include, but are not limited to, choline ester derivatives and the like, N- alkylmorpholine esters and the like. Other derivatives of the compounds of this invention have activity in both their acid and acid derivative forms, but in the acid sensitive form often offers advantages of solubility, tissue compatibility, or delayed release in the mammalian organism (see, Bundgard, FL, Design of Prodrugs, pp. 7-9, 21-24, Elsevier, Amsterdam 1985).
- Prodrugs include acid derivatives well know to practitioners of the art, such as, for example, esters prepared by reaction of the parent acid with a suitable alcohol, or amides prepared by reaction of the parent acid compound with a substituted or unsubstituted amine, or acid anhydrides, or mixed anhydrides.
- Simple aliphatic or aromatic esters, amides and anhydrides derived from acidic groups pendant on the compounds of this invention are particular prodrugs.
- double ester type prodrugs such as (acyloxy)alkyl esters or
- ((alkoxycarbonyl)oxy)alkylesters Particularly the Ci to Cs alkyl, C2-C 8 alkenyl, C2-C 8 alkynyl, aryl, C7-C12 substituted aryl, and C7-C12 arylalkyl esters of the compounds of the invention.
- Solvate refers to forms of the compound that are associated with a solvent or water (also referred to as "hydrate”), usually by a solvolysis reaction. This physical association includes hydrogen bonding.
- solvents include water, ethanol, acetic acid and the like.
- the compounds of the invention may be prepared e.g. in crystalline form and may be solvated or hydrated.
- Suitable solvates include pharmaceutically acceptable solvates, such as hydrates, and further include both stoichiometric solvates and non-stoichiometric solvates. In certain instances the solvate will be capable of isolation, for example when one or more solvent molecules are incorporated in the crystal lattice of the crystalline solid.
- “Solvate” encompasses both solution-phase and isolable solvates. Representative solvates include hydrates, ethanolates and methanolates.
- a "subject" to which administration is contemplated includes, but is not limited to, humans (i.e., a male or female of any age group, e.g., a pediatric subject (e.g, infant, child, adolescent) or adult subject (e.g., young adult, middle-aged adult or senior adult)) and/or a non- human animal, e.g., a mammal such as primates (e.g., cynomolgus monkeys, rhesus monkeys), cattle, pigs, horses, sheep, goats, rodents, cats, and/or dogs.
- the subject is a human.
- the subject is a non-human animal.
- the terms "human", “patient” and “subject” are used interchangeably herein.
- “Therapeutically effective amount” means the amount of a compound that, when administered to a subject for treating a disease, is sufficient to effect such treatment for the disease.
- the “therapeutically effective amount” can vary depending on the compound, the disease and its severity, and the age, weight, etc., of the subject to be treated.
- Preventing refers to a reduction in risk of acquiring or developing a disease or disorder (i.e., causing at least one of the clinical symptoms of the disease not to develop in a subject not yet exposed to a disease-causing agent, or predisposed to the disease in advance of disease onset.
- prophylaxis is related to "prevention", and refers to a measure or procedure the purpose of which is to prevent, rather than to treat or cure a disease.
- prophylactic measures may include the administration of vaccines; the
- Treating” or “treatment” of any disease or disorder refers, in certain
- treating refers to ameliorating at least one physical parameter, which may not be discernible by the subject.
- treating or
- treatment refers to modulating the disease or disorder, either physically, (e.g., stabilization of a discernible symptom), physiologically, (e.g., stabilization of a physical parameter), or both.
- “treating” or “treatment” relates to slowing the progression of the disease.
- the term “isotopic variant” refers to a compound that contains unnatural proportions of isotopes at one or more of the atoms that constitute such compound.
- an “isotopic variant” of a compound can contain one or more non-radioactive isotopes, such as for example, deuterium ( 2 H or D), carbon-13 ( 13 C), nitrogen-15 ( 15 N), or the like.
- the following atoms, where present, may vary, so that for example, any hydrogen may be 2 H/D, any carbon may be 13 C, or any nitrogen may be 15 N, and that the presence and placement of such atoms may be determined within the skill of the art.
- the invention may include the preparation of isotopic variants with radioisotopes, in the instance for example, where the resulting compounds may be used for drug and/or substrate tissue distribution studies.
- the radioactive isotopes tritium, i.e., 3 H, and carbon-14, i.e., 14 C, are particularly useful for this purpose in view of their ease of incorporation and ready means of detection.
- compounds may be prepared that are substituted with positron emitting isotopes, such as n C, 18 F, 15 0 and 13 N, and would be useful in Positron Emission Topography (PET) studies for examining substrate receptor occupancy. All isotopic variants of the compounds provided herein, radioactive or not, are intended to be encompassed within the scope of the invention.
- enantiomers and those that are non-superimposable mirror images of each other are termed "enantiomers".
- An enantiomer can be characterized by the absolute configuration of its asymmetric center and is described by the R- and S-sequencing rules of Cahn and Prelog, or by the manner in which the molecule rotates the plane of polarized light and designated as dextrorotatory or levorotatory (i.e., as (+) or (-)-isomers respectively).
- a chiral compound can exist as either individual enantiomer or as a mixture thereof. A mixture containing equal proportions of the enantiomers is called a "racemic mixture".
- Tautomers refer to compounds that are interchangeable forms of a particular compound structure, and that vary in the displacement of hydrogen atoms and electrons. Thus, two structures may be in equilibrium through the movement of ⁇ electrons and an atom (usually H). For example, enols and ketones are tautomers because they are rapidly interconverted by treatment with either acid or base. Another example of tautomerism is the aci- and nitro- forms of phenylnitromethane, which are likewise formed by treatment with acid or base.
- Tautomeric forms may be relevant to the attainment of the optimal chemical reactivity and biological activity of a compound of interest.
- a pure enantiomeric compound is substantially free from other enantiomers or stereoisomers of the compound (i.e., in enantiomeric excess).
- an "S" form of the compound is substantially free from the "R” form of the compound and is, thus, in enantiomeric excess of the "R” form.
- enantiomerically pure or “pure enantiomer” denotes that the compound comprises more than 75% by weight, more than 80% by weight, more than 85% by weight, more than 90% by weight, more than 91% by weight, more than 92% by weight, more than 93% by weight, more than 94% by weight, more than 95% by weight, more than 96% by weight, more than 97% by weight, more than 98% by weight, more than 98.5% by weight, more than 99% by weight, more than 99.2% by weight, more than 99.5% by weight, more than 99.6% by weight, more than 99.7% by weight, more than 99.8% by weight or more than 99.9% by weight, of the enantiomer.
- the weights are based upon total weight of all enantiomers or stereoisomers of the compound.
- the term “enantiomerically pure R- compound” refers to at least about 80% by weight R-compound and at most about 20% by weight S-compound, at least about 90% by weight R-compound and at most about 10% by weight S-compound, at least about 95% by weight R-compound and at most about 5% by weight S-compound, at least about 99% by weight R-compound and at most about 1% by weight S- compound, at least about 99.9% by weight R-compound or at most about 0.1% by weight S- compound.
- the weights are based upon total weight of compound.
- the term “enantiomerically pure S- compound” or “S-compound” refers to at least about 80% by weight S-compound and at most about 20% by weight R-compound, at least about 90% by weight S-compound and at most about 10% by weight R-compound, at least about 95% by weight S-compound and at most about 5% by weight R-compound, at least about 99% by weight S-compound and at most about 1% by weight R-compound or at least about 99.9% by weight S-compound and at most about 0.1% by weight R-compound.
- the weights are based upon total weight of compound.
- an enantiomerically pure compound or a pharmaceutically acceptable salt, solvate, hydrate or prodrug thereof can be present with other active or inactive ingredients.
- a pharmaceutical composition comprising enantiomerically pure R-compound can comprise, for example, about 90% excipient and about 10% enantiomerically pure R-compound.
- the enantiomerically pure R- compound in such compositions can, for example, comprise, at least about 95% by weight R- compound and at most about 5% by weight S-compound, by total weight of the compound.
- a pharmaceutical composition comprising enantiomerically pure S-compound can comprise, for example, about 90% excipient and about 10% enantiomerically pure S-compound.
- the enantiomerically pure S-compound in such compositions can, for example, comprise, at least about 95% by weight S-compound and at most about 5% by weight R-compound, by total weight of the compound.
- the active ingredient can be formulated with little or no excipient or carrier.
- the compounds of this invention may possess one or more asymmetric centers; such compounds can therefore be produced as individual (R)- or (S)- stereoisomers or as mixtures thereof.
- heterocyclic ring may have one to four heteroatoms so long as the heteroaromatic ring is chemically feasible and stable.
- compositions comprising a bolaamphiphile vesicle complex.
- the bolaamphiphile vesicle complexes comprise one or more bolaamphiphilic compounds and a biologically active compound.
- the biologically active compound is siRNA.
- novel siRNA and bolamphiphilic complex comprising siRNA and one or more bolaamphiphilic compounds.
- novel formulations of siRNA with bolaamphiphilic compounds or with bolaamphiphile vesicles are provided herein.
- methods of delivering siRNA into animal or human cell comprising the step of administering to the animal or human a pharmaceutical composition comprising a bolaamphiphile vesicle complex; and wherein the bolaamphiphile vesicle complex comprises one or more bolaamphiphilic compounds and siRNA.
- the cell is brain cell, liver cell, gall bladder cell, or a lung cell.
- the cells are are cells of a lymph node, a CD4+ lymphocyte, or a cell of the mononuclear phagocyte system, including, without limitation, a monocyte, macrophage, a resident brain microglial cell and a dendritic cell.
- kits for delivering siRNA into animal or human organs comprising the step of administering to the animal or human a pharmaceutical composition comprising of a bolaamphiphile vesicle complex; and wherein the bolaamphiphile vesicle complex comprises one or more bolaamphiphilic compounds and siRNA.
- the organ is brain, liver, gall bladder, or a lung.
- the bolaamphiphilic complex comprises one bolaamphiphilic compound. In another embodiment, the bolaamphiphilic complex comprises two bolaamphiphilic compounds.
- the bolaamphiphilic compound consists of two hydrophilic headgroups linked through a long hydrophobic chain.
- the hydrophilic headgroup is an amino containing group.
- the hydrophilic headgroup is a tertiary or quaternary amino containing group.
- the bolaamphiphilic compound is a compound according to formula I:
- each HG 1 and HG 2 is independently a hydrophilic head group
- L 1 is alkylene, alkenyl, heteroalkylene, or heteroalkenyl linker; unsubstituted or substituted with C 1 -C 20 alkyl, hydroxyl, or oxo.
- the pharmaceutically acceptable salt is a quaternary ammonium salt.
- the bolaamphiphilic compound of formula I with respect to the bolaamphiphilic compound of formula I,
- L 1 is heteroalkylene, or heteroalkenyl linker comprising C, N, and O atoms; unsubstituted or substituted with C1-C2 0 alkyl, hydroxyl, or oxo.
- each L 2 and L 3 is C4-C2 0 alkenyl linker; unsubstituted or substituted with Ci-Cs alkyl or hydroxy;
- n4 is independently an integer from 4-20.
- each L 2 and L 3 is independently -C(R 1 )-C(OH)-CH 2 -
- R 1 is Ci-Cs alkyl, and n7 is independently an integer from 4-20.
- L 1 is -0-(CH 2 ) nl -0-C(0)-(CH 2 ) n2 -C(0)-0-(CH 2 ) n3 -0-.
- each Z 1 and Z 2 is independently -C(R 3 ) 2 -, -N(R 3 )- or -0-;
- each R la , R lb , R 3 , and R 4 is independently H or Ci-C 8 alkyl
- each R 2a and R 2b is independently H , Ci-Cs alkyl, OH, or alkoxy;
- each n8, n9, ni l, and nl2 is independently an integer from 1-20;
- nlO is an integer from 2-20;
- each dotted bond is independently a single or a double bond.
- each methylene carbon is unsubstituted or substituted with C1-C4 alkyl; and each nl, n2, and n3 is independently an integer from 4-20.
- the bolaamphiphilic compound of formula I is a compound according to formula II, III, IV, V, or VI:
- each HG 1 and HG 2 is independently a hydrophilic head group
- each Z 1 and Z 2 is independently -C(R 3 ) 2 -, -N(R 3 )- or -0-;
- each R la , R lb , R 3 , and R 4 is independently H or Ci-C 8 alkyl
- each R 2a and R 2b is independently H , Ci-C 8 alkyl, OH, alkoxy, or O-HG 1 or O-HG 2 ; each n8, n9, ni l, and nl2 is independently an integer from 1-20;
- nlO is an integer from 2-20;
- each dotted bond is independently a single or a double bond.
- each n9 and nl 1 is independently an integer from 2-12. In another embodiment, n9 and nl 1 is independently an integer from 4-8. In a particular embodiment, each n9 and nl 1 is 7 or 1 1.
- each n8 and nl2 is independently 1, 2, 3, or 4. In a particular embodiment, each n8 and nl2 is 1.
- each R 2a and R 2b is independently H, OH, or alkoxy. In another embodiment, each R 2a and R 2b is independently H, OH, or OMe. In another embodiment, each R 2a and R 2b is independently-O-HG 1 or O-HG 2 . In a particular embodiment, each R 2a and R 2b is OH.
- each R la and R lb is independently H, Me, Et, n-Pr, i-Pr, n-Bu, i-Bu, sec-Bu, n- pentyl, isopentyl, n-hexyl, n-heptyl, or n-octyl.
- each R la and R lb is independently n-pentyl.
- each dotted bond is a single bond. In another embodiment, each dotted bond is a double bond.
- nlO is an integer from 2-16. In another embodiment, nlO is an integer from 2- 12. In a particular embodiment, nlO is 2, 4, 6, 8, 10, 12, or 16.
- R 4 is H, Me, Et, n-Pr, i-Pr, n-Bu, i-Bu, sec-Bu, n-pentyl, or isopentyl. In another embodiment, R 4 is Me, or Et. In a particular embodiment, R 4 is Me.
- each Z 1 and Z 2 is independently C(R 3 )2-, or -N(R 3 )-.
- each Z 1 and Z 2 is independently C(R 3 )2-, or -N(R 3 )-; and each R 3 is independently H, Me, Et, n- Pr, i-Pr, n-Bu, i-Bu, sec-Bu, n-pentyl, or isopentyl.
- R 3 is H.
- each Z 1 and Z 2 is -0-.
- each HG 1 and HG 2 is independently selected from:
- X is -NR 5a R 5b , or -N + R 5a R 5b R 5c ; each R 5a , and R 5b is independently H or substituted or unsubstituted C1-C2 0 alkyl or R 5a and R 5b may join together to form an N containing substituted or unsubstituted heteroaryl, or substituted or unsubstituted heterocyclyl; each R 5c is independently substituted or unsubstituted C1-C2 0 alkyl; each R 8 is independently H, substituted or unsubstituted C1-C2 0 alkyl, alkoxy, or carboxy;
- ml is 0 or 1
- each nl3, nl4, and nl5 is independently an integer from 1-20.
- HG 1 and HG 2 are as defined above, and each ml is 0.
- HG 1 and HG 2 are as defined above, and each ml is 1.
- HG 1 and HG 2 are as defined above, and each nl3 is 1 or 2.
- HG 1 and HG 2 are as defined above, and each nl4 and nl5 is independently 1, 2, 3,
- each nl4 and nl5 is independently 2 or 3.
- the bolaamphiphilic compound is a compound according to formula Vila, Vllb, VIIc, or Vlld:
- Vlld or a pharmaceutically acceptable salt, solvate, hydrate, prodrug, stereoisomer, tautomer, isotopic variant, or N-oxide thereof, or a combination thereof;
- each X is -NR 5a R 5b , or -N + R 5a R 5b R 5c ; each R 5a , and R 5b is independently H or substituted or unsubstituted C1-C2 0 alkyl or R 5a and R 5b may join together to form an N containing substituted or unsubstituted heteroaryl, or substituted or unsubstituted heterocyclyl;
- each R 5c is independently substituted or unsubstituted C1-C2 0 alkyl;
- nlO is an integer from 2-20;
- each dotted bond is independently a single or a double bond.
- the bolaamphiphilic compound is a compound according to formula Villa, Vlllb, VIIIc, or Vllld:
- Vllld or a pharmaceutically acceptable salt, solvate, hydrate, prodrug, stereoisomer, tautomer, isotopic variant, or N-oxide thereof, or a combination thereof;
- each X is -NR 5a R 5b , or -N + R 5a R 5b R 5c ; each R 5a , and R 5b is independently H or substituted or unsubstituted C1-C2 0 alkyl or R 5a and R 5b may join together to form an N containing substituted or unsubstituted heteroaryl, or substituted or unsubstituted heterocyclyl;
- each R 5c is independently substituted or unsubstituted C1-C2 0 alkyl;
- nlO is an integer from 2-20;
- each dotted bond is independently a single or a double bond.
- the bolaamphiphilic compound is a compound according to formula IXa, IXb, or IXc:
- IXc or a pharmaceutically acceptable salt, solvate, hydrate, prodrug, stereoisomer, tautomer, isotopic variant, or N-oxide thereof, or a combination thereof;
- each X is -NR 5a R 5b , or -N + R 5a R 5b R 5c ; each R 5a , and R 5b is independently H or substituted or unsubstituted C1-C2 0 alkyl or R 5a and R 5b may join together to form an N containing substituted or unsubstituted heteroaryl, or substituted or unsubstituted heterocyclyl;
- each R 5c is independently substituted or unsubstituted C1-C2 0 alkyl;
- nlO is an integer from 2-20;
- each dotted bond is independently a single or a double bond.
- the bolaamphiphilic compound is a compound according to formula Xa, Xb, or Xc:
- Xc or a pharmaceutically acceptable salt, solvate, hydrate, prodrug, stereoisomer, tautomer, isotopic variant, or N-oxide thereof, or a combination thereof;
- each X is -NR 5a R 5b , or -N + R 5a R 5b R 5c ; each R 5a , and R 5b is independently H or substituted or unsubstituted C1-C2 0 alkyl or R 5a and R 5b may join together to form an N containing substituted or unsubstituted heteroaryl, or substituted or unsubstituted heterocyclyl;
- each R 5c is independently substituted or unsubstituted C1-C2 0 alkyl;
- nlO is an integer from 2-20;
- each dotted bond is independently a single or a double bond.
- each dotted bond is a single bond. In another embodiment, each dotted bond is a double bond.
- Vlla-VIId Villa- Vllld, IXa-IXc, or Xa-Xc
- nlO is an integer from 2-16.
- Vlla-VIId Villa- Vllld, IXa-IXc, or Xa-Xc
- nlO is an integer from 2-12.
- Vlla-VIId Villa- Vllld, IXa-IXc, or Xa-Xc
- nlO is 2, 4, 6, 8, 10, 12, or 16.
- each R 5a , R 5b , and R 5c is independently substituted or unsubstituted C1-C20 alkyl.
- each R 5a , R 5b , and R 5c is independently unsubstituted C1-C20 alkyl.
- R 5a , R 5b , and R 5c is Ci-C 20 alkyl substituted with -OC(0)R 6 ; and R 6 is Ci-C 20 alkyl.
- R 5a , R 5b , and R 5c are independently Ci-C 20 alkyl substituted with -OC(0)R 6 ; and R 6 is C 1 -C 2 0 alkyl.
- R 6 is Me, Et, n-Pr, i-Pr, n-Bu, i-Bu, sec-Bu, n-pentyl, isopentyl, n-hexyl, n-heptyl, or n-octyl.
- R 6 is Me.
- R 5a , R 5b , and R 5c is Ci-C 20 alkyl substituted with amino, alkylamino or dialkylamino.
- R 5a , R 5b , and R 5c are independently Ci-C 20 alkyl substituted with amino, alkylamino or dialkylamino.
- Vlla-VIId Villa- Vllld, IXa-IXc, or Xa-Xc, R 5a , and R 5b together with the N they are attached to form substituted or unsubstituted heteroaryl.
- Vlla-VIId Villa- Vllld, IXa-IXc, or Xa-Xc, R 5a , and R 5b together with the N they are attached to form substituted or unsubstituted pyridyl.
- Vlla-VIId Villa- Vllld
- IXa-IXc or Xa-Xc
- R 5a , and R 5b together with the N they are attached to form substituted or unsubstituted monocyclic or bicyclic heterocyclyl.
- Vlla-VIId Villa- Vllld
- IXa-IXc Xa-Xc X is substituted or unsubstituted
- Vlla-VIId Villa- Vllld
- IXa-IXc IXa-IXc
- o -Xc X
- Vlla-VIId Villa- Vllld, IXa-IXc, or Xa-Xc
- X is -NMe 2 or -N + Me 3 .
- Vlla-VIId Villa- Vllld, IXa-IXc, or Xa-Xc
- X is -N(Me)-CH 2 CH 2 -OAc or -N + (Me) 2 -CH 2 CH 2 - OAc.
- X is a chitosanyl group; and the chitosanyl group is a poly-(D)glucosaminyl group with MW of 3800 to 20,000 Daltons, and is attached to the core via .
- the chitosanyl group is
- each pi and p2 is independently an integer from 1-400; and each R 7a is H or acyl.
- each pi and p2 is independently an integer from 1-400; and each R 7a is H or acyl.
- the bolaamphiphilic compound is a pharmaceutically acceptable salt.
- the bolaamphiphilic compound is in a form of a quaternary salt.
- the bolaamphiphilic compound is in a form of a quaternary salt with pharmaceutically acceptable alkyl halide or alkyl tosylate.
- the bolaamphiphilic compound is any one of the bolaambphilic compounds listed in Table 1.
- the bolaamphiphilic compound is GLH-19.
- the bolaamphiphilic compound is GLH-20.
- the bolaamphiphilic compound is GLH-16.
- the bolaamphiphilic compound is GLH-26, 29, or 41.
- the bolaamphiphilic compound is other than Comound ID GLH-16, GLH-19, GLH-20, GLH-26, GLH-29, or GLH-41.
- the bolaamphiphilic compound is other than Comound ID GLH-6, GLH-8, GLH-12, GLH-13, GLH-13a, or GLH-49 to GLH-54 (all can be used as intermediates for bolaamphiphiles).
- the bolaamphiphilic compound is selected from the bolaambphilic compounds listed in Table 1.
- the bolaamphiphilic compound is other than Comound ID GLH-16, GLH-19, GLH-20, GLH-26, GLH-29, or GLH-41.
- the compound is other than compound with ID GLH-3, GLH-4, GLH-5, or GLH-21.
- bolaamphiphilic compound is selected from the bolaambphilic compounds listed in Table 1, and the compound is compound with ID GLH-7, GLH-9, GLH-10, GLH-11, GLH-14, GLH-15, GLH-17, GLH-18, GLH-22, GLH-23, GLH-24, GLH-25, GLH-27, GLH-28, GLH-30 to GLH-48, GLH-55, GLH-56, or GLH-57.
- the cell is brain cell, liver cell, gall bladder cell, or a lung cell.
- the cells are are cells of a lymph node, a CD4+ lymphocyte, or a cell of the mononuclear phagocyte system, including, without limitation, a monocyte, macrophage, a resident brain microglial cell and a dendritic cell.
- kits for delivering siRNA into animal or human brain comprising the step of administering to the animal or human a pharmaceutical composition comprising of a bolaamphiphile vesicle complex; and wherein the bolaamphiphile vesicle complex comprises one or more bolaamphiphilic compounds and siRNA.
- kits for delivering siRNA into animal or human liver comprising the step of administering to the animal or human a pharmaceutical composition comprising of a bolaamphiphile vesicle complex; and wherein the bolaamphiphile vesicle complex comprises one or more bolaamphiphilic compounds and siRNA.
- RNA delivering siRNA into animal or human lungs comprising the step of administering to the animal or human a pharmaceutical composition comprising of a bolaamphiphile vesicle complex; and wherein the bolaamphiphile vesicle complex comprises one or more bolaamphiphilic compounds and siRNA.
- kits for delivering siRNA into animal or human gall bladder comprising the step of administering to the animal or human a
- composition comprising of a bolaamphiphile vesicle complex; and wherein the bolaamphiphile vesicle complex comprises one or more bolaamphiphilic compounds and siRNA.
- nano-particles comprising one or more bolaamphiphilic compounds and siRNA.
- the bolaamphiphilic compounds and siRNA are encapsulated within the nano-particle.
- polynucleotides selected from DNA or RNA fragments are delivered by the nanoparticles of the invention.
- the polynucleotide is a small interfering RNA (siRNA), a double-stranded R A molecule of 20- 25 nucleotides.
- siRNAs play a variety of roles in biology. Most notably, siRNAs are involved in the RNA interference (RNAi) pathway, where they interfere with the expression of a specific gene. In addition to their role in the RNAi pathway, siRNAs also act in RNAi-related pathways, e.g., as an antiviral mechanism or in shaping the chromatin structure of a genome.
- target genes or biological pathways which can be interfered by siRNA are epidermal growth factor receptor variant III gene, which is expressed in 40-50% of gliomas, and the phosphoinositide 3 -kinase (PI3K)/Akt pathway, which plays a crucial role in
- the polynucleotide is a DNA- RNA hybrid molecule.
- the bolaamphiphile vesicle complexes comprise one or more bolaamphiphilic compounds and the biologically active compound is a siRNA that is a mixture of two or more siRNA, wherein at least one siRNA is directed to a first target, and at least one siRNA is directed to a second target.
- novel siRNA and bolamphiphilic vesicle complex comprising siRNA and one or more bolaamphiphilic compounds.
- novel formulations of siRNA with bolaamphiphilic compounds or with bolaamhphilic vesicles are provided herein.
- kits for delivering siRNA into animal or human cells are provided here.
- siRNA- bolaamphiphile vesicle complexes or siRNA-bolaamphiphilic vesicle complexes into animals or human wherein the bolaamphiphile vesicle complex comprises one or more bolaamphiphilic compounds and siRNA.
- the cell is brain cell, liver cell, gall bladder, or a lung cell.
- the cells are cells of a lymph node, a CD4+ lymphocyte, or a cell of the mononuclear phagocyte system, including, without limitation, a monocyte, macrophage, a resident brain microglial cell and a dendritic cell.
- the cell is a cancer cell.
- kits for delivering siRNA into animal or human organs comprising the step of administering to the animal or human a pharmaceutical composition comprising of a bolaamphiphile vesicle complex; and wherein the bolaamphiphile vesicle complex comprises one or more bolaamphiphilic compounds and siRNA.
- the organ is brain, liver, gall bladder, a lymph node or a lung.
- the siRNA is delivered to a tumor.
- the active agent is an RNA-DNA heteroduplex with properties of siRNA molecules.
- the bolaamphiphile vesicle complexes comprise one or more bolaamphiphilic compounds and the biologically active compound is a siRNA that is a mixture of two or more siRNA or a mixture comprising at least one siRNA and one RNA-DNA duplex, wherein at least one siRNA or RNA-DNA duplex is directed to a first target, and at least one siRNA or RNA-DNA duplex is directed to a second target.
- the target is a promoter.
- the first and second targets are sequences of separate and distinct genes.
- compositions comprising a nano-sized particle comprising one or more bolaamphiphilic compounds and siRNA; and a pharmaceutically acceptable carrier.
- kits for treatment or diagnosis of diseases or disorders selected from cancer such as breast cancer, prostate cancer and brain tumors using the nano-particles, pharmaceutical compositions or formulations of the present invention.
- the syntheses can involve initial construction of, for example, vernonia oil or direct functionalization of natural derivatives by organic synthesis manipulations such as, but not limiting to, epoxide ring opening.
- organic synthesis manipulations such as, but not limiting to, epoxide ring opening.
- the epoxy group is opened by the addition of reagents such as carboxylic acids or organic or inorganic nucleophiles.
- Such ring opening results in a mixture of two products in which the new group is introduced at either of the two carbon atoms of the epoxide moiety.
- This provides beta substituted alcohols in which the substitution position most remote from the CO group of the main aliphatic chain of the vernonia oil derivative is arbitrarily assigned as position 1, while the neighboring substituted carbon position is designated position 2.
- the Derivatives and Precursors shown herein may indicate structures with the hydroxy group always at position 2 but the Derivatives and Precursors wherein the hydroxy is at position 1 are also encompassed by the invention.
- a radical of the formula— CH(OH)— CH(R)— refers to the substitution of—OH at either the carbon closer to the CO group, designated position 2 or to the carbon at position 1.
- vesicles are prepared using the mixture of unfractionated positional isomers.
- the bola used in vesicle preparation can actually be a mixture of three different positional isomers.
- the three different derivatives are isolated. Accordingly, the vesicles disclosed herein can be made from a mixture of the three isomers of each derivative or, in other embodiments, the individual isomers can be isolated and used for preparation of vesicles.
- Symmetrical bolaamphiphiles can form relatively stable self aggregate vesicle structures by the use of additives such as cholesterol and cholesterol derivatives (e.g., cholesterol hemisuccinate, cholesterol oleyl ether, anionic and cationic derivatives of cholesterol and the like), or other additives including single headed amphiphiles with one, two or multiple aliphatic chains such as phospholipids, zwitterionic, acidic, or cationic lipids.
- zwitterionic lipids are phosphatidylcholines, phosphatidylethanol amines and sphingomyelins.
- Examples of acidic amphiphilic lipids are phosphatidylglycerols, phosphatidylserines, phosphatidylinositols, and phosphatidic acids.
- Examples of cationic amphipathic lipids are diacyl trimethylammonium propanes, diacyl dimethylammonium propanes, and stearylamines cationic amphiphiles such as spermine cholesterol carbamates, and the like, in optimum concentrations which fill in the larger spaces on the outer surfaces, and/or add additional hydrophilicity to the particles.
- Such additives may be added to the reaction mixture during formation of nanoparticles to enhance stability of the nanoparticles by filling in the void volumes of in the upper surface of the vesicle membrane.
- Stability of nano vesicles according to the present disclosure can be demonstrated by dynamic light scattering (DLS) and transmission electron microscopy (TEM).
- DLS dynamic light scattering
- TEM transmission electron microscopy
- suspensions of the vesicles can be left to stand for 1, 5, 10, and 30 days to assess the stability of the nanoparticle solution/suspension and then analyzed by DLS and TEM.
- the vesicles disclosed herein may encapsulate within their core the active agent, which in particular embodiments is selected from peptides, proteins, nucleotides and or non- polymeric agents.
- the active agent is also associated via one or more non-covalent interactions to the vesicular membrane on the outer surface and/or the inner surface, optionally as pendant decorating the outer or inner surface, and may further be incorporated into the membrane surrounding the core.
- biologically active peptides, proteins, nucleotides or non-polymeric agents that have a net electric charge may associate ionically with oppositely charged headgroups on the vesicle surface and/or form salt complexes therewith.
- additives which may be used in particular aspects of these embodiments, additives which may be used in particular aspects of these embodiments, additives which may be used
- bolaamphiphiles or single headed amphiphiles comprise one or more branching alkyl chains bearing polar or ionic pendants, wherein the aliphatic portions act as anchors into the vesicle's membrane and the pendants (e.g., chitosan derivatives or polyamines or certain peptides) decorate the surface of the vesicle to enhance penetration through various biological barriers such as the intestinal tract and the BBB, and in some instances are also selectively hydrolyzed at a given site or within a given organ.
- the concentration of these additives is readily adjusted according to experimental determination.
- the oral formulations of the present disclosure comprise agents that enhance penetration through the membranes of the GI tract and enable passage of intact nanoparticles containing the drug.
- agents may be any of the additives mentioned above and, in particular aspects of these embodiment, include chitosan and derivatives thereof, serving as vehicle surface ligands, as decorations or pendants on the vesicles, or the agents may be excipients added to the formulation.
- the nanoparticles and vesicles disclosed herein may comprise the fluorescent marker carboxyfluorescein (CF) encapsulated therein while in particular aspects, the nanoparticle and vesicles of the present disclosure may be decorated with one or more of PEG, e.g. PEG2000-vernonia derivatives as pendants.
- PEG e.g. PEG2000-vernonia derivatives
- two kinds of PEG - vernonia derivatives can be used: PEG-ether derivatives, wherein PEG is bound via an ether bond to the oxygen of the opened epoxy ring of, e.g., vernolic acid and PEG-ester derivatives, wherein PEG is bound via an ester bond to the carboxylic group of, e.g., vernolic acid.
- vesicles made from synthetic amphiphiles, as well as liposomes, made from synthetic or natural phospholipids, substantially (or totally) isolate the therapeutic agent from the environment allowing each vesicle or liposome to deliver many molecules of the therapeutic agent.
- the surface properties of the vesicle or liposome can be modified for biological stability, enhanced penetration through biological barriers and targeting, independent of the physico-chemical properties of the encapsulated drug.
- the headgroup is selected from: (i) choline or thiocholine, O-alkyl, N-alkyl or ester derivatives thereof; (ii) non-aromatic amino acids with functional side chains such as glutamic acid, aspartic acid, lysine or cysteine, or an aromatic amino acid such as tyrosine, tryptophan, phenylalanine and derivatives thereof such as levodopa (3, 4-dihydroxy -phenylalanine) and p-aminophenylalanine; (iii) a peptide or a peptide derivative that is specifically cleaved by an enzyme at a diseased site selected from enkephalin, N-acetyl- ala-ala, a peptide that constitutes a domain recognized by beta and gamma secretases, and a peptide that is recognized by stromelysins; (iv) saccharides such as glucose,
- nano-sized particle and vesicles disclosed herein further comprise at least one additive for one or more of targeting purposes, enhancing permeability and increasing the stability the vesicle or particle.
- additives may selected from from: (i) a single headed amphiphilic derivative comprising one, two or multiple aliphatic chains, preferably two aliphatic chains linked to a midsection/spacer region such as— H— (CH 2 ) 2 ⁇ N ⁇ (CH 2 ) 2 ⁇ N ⁇ , or -0--(CH 2 )2--N--(CH 2 )2--0-, and a sole headgroup, which may be a selectively cleavable headgroup or one containing a polar or ionic selectively cleavable group or moiety, attached to the N atom in the middle of said midsection.
- the additive can be selected from among cholesterol and cholesterol derivatives such as cholesteryl hemmisuccinate; phospholipids, zwitterionic, acidic, or cationic lipids; chitosan and chitosan derivatives, such as vernolic acid-chitosan conjugate, quaternized chitosan, chitosan- polyethylene glycol (PEG) conjugates, chitosan-polypropylene glycol (PPG) conjugates, chitosan N-conjugated with different amino acids, carboxyalkylated chitosan, sulfonyl chitosan, carbohydrate-branched N-(carboxymethylidene) chitosan and N-(carboxymethyl) chitosan;
- cholesterol and cholesterol derivatives such as cholesteryl hemmisuccinate
- polyamines such as protamine, polylysine or polyarginine
- ligands of specific receptors at a target site of a biological environment such as nicotine, cytisine, lobeline, 1 -glutamic acid MK801, morphine, enkephalins, benzodiazepines such as diazepam (valium) and librium, dopamine agonists, dopamine antagonists tricyclic antidepressants, muscarinic agonists, muscarinic antagonists, cannabinoids and arachidonyl ethanol amide
- polycationic polymers such as polyethylene amine
- peptides that enhance transport through the BBB such as OX 26, transferrins, polybrene, histone, cationic dendrimer, synthetic peptides and polymyxin B nonapeptide (PMBN)
- monosaccharides such as glucose, mannose, ascorbic acid and derivatives thereof
- the aforementioned head groups on the additives designed for one or more of targeting purposes and enhancing permeability may also be a head group, preferably on an asymmetric bolaamphiphile wherein the other head group is another moiety, or the head group on both sides of a symmetrical bolaamphiphile.
- the bolaamphiphile head groups that comprise the vesicles membranes can interact with the active agents to be encapsulated to be delivered in to the brain and brain sites, and or other targeted sites, by ionic interactions to enhance the % encapsulation via complexation and well as passive encapsulation within the vesicles core.
- the formulation may contain other additives within the vehicles membranes to further enhance the degree of encapsulation of the active agents by interactions other than ionic interactions such as polar or hydrophobic interactions
- nano-sized particle and vesicles discloser herein may comprises at least one biologically active agent is selected from: (i) a natural or synthetic peptide or protein such as analgesics peptides from the enkephalin class, insulin, insulin analogs, oxytocin, calcitonin, tyrotropin releasing hormone, follicle stimulating hormone, luteinizing hormone, vasopressin and vasopressin analogs, catalase, interleukin-II, interferon, colony stimulating factor, tumor necrosis factor (TNF), melanocyte-stimulating hormone, superoxide dismutase, glial cell derived neurotrophic factor (GDNF) or the Gly-Leu-Phe (GLF) families; (ii) nucleosides and polynucleotides selected from DNA or RNA molecules such as small interfering RNA (siRNA) or a DNA plasmid; (iii) anti
- the invention provides a pharmaceutical composition
- a pharmaceutical composition comprising a pharmaceutically acceptable carrier and a pharmaceutically effective amount of a compound of Formula I or a complex thereof.
- the compounds provided herein are typically administered in the form of a pharmaceutical composition.
- Such compositions can be prepared in a manner well known in the pharmaceutical art and comprise at least one active compound.
- the carrier is a parenteral carrier, oral or topical carrier.
- the present invention also relates to a compound or pharmaceutical composition of compound according to Formula I; or a pharmaceutically acceptable salt or solvate thereof for use as a pharmaceutical or a medicament.
- the compounds provided herein are administered in a therapeutically effective amount.
- the amount of the compound actually administered will typically be determined by a physician, in the light of the relevant circumstances, including the condition to be treated, the chosen route of administration, the actual compound administered, the age, weight, and response of the individual patient, the severity of the patient's symptoms, and the like.
- compositions provided herein can be administered by a variety of routes including oral, rectal, transdermal, subcutaneous, intravenous, intramuscular, and intranasal.
- routes including oral, rectal, transdermal, subcutaneous, intravenous, intramuscular, and intranasal.
- the compounds provided herein are preferably formulated as either injectable or oral compositions or as salves, as lotions or as patches all for transdermal administration.
- compositions for oral administration can take the form of bulk liquid solutions or suspensions, or bulk powders. More commonly, however, the compositions are presented in unit dosage forms to facilitate accurate dosing.
- unit dosage forms refers to physically discrete units suitable as unitary dosages for human subjects and other mammals, each unit containing a predetermined quantity of active material calculated to produce the desired therapeutic effect, in association with a suitable pharmaceutical excipient.
- Typical unit dosage forms include prefilled, premeasured ampules or syringes of the liquid compositions or pills, tablets, capsules or the like in the case of solid compositions.
- the compound is usually a minor component (from about 0.1 to about 50% by weight or preferably from about 1 to about 40% by weight) with the remainder being various vehicles or carriers and processing aids helpful for forming the desired dosing form.
- Liquid forms suitable for oral administration may include a suitable aqueous or nonaqueous vehicle with buffers, suspending and dispensing agents, colorants, flavors and the like.
- Solid forms may include, for example, any of the following ingredients, or compounds of a similar nature: a binder such as microcrystalline cellulose, gum tragacanth or gelatin; an excipient such as starch or lactose, a disintegrating agent such as alginic acid, Primogel, or corn starch; a lubricant such as magnesium stearate; a glidant such as colloidal silicon dioxide; a sweetening agent such as sucrose or saccharin; or a flavoring agent such as peppermint, methyl salicylate, or orange flavoring.
- a binder such as microcrystalline cellulose, gum tragacanth or gelatin
- an excipient such as starch or lactose, a disintegrating agent such as alginic acid, Primogel, or corn starch
- Injectable compositions are typically based upon injectable sterile saline or phosphate-buffered saline or other injectable carriers known in the art.
- the active compound in such compositions is typically a minor component, often being from about 0.05 to 10% by weight with the remainder being the injectable carrier and the like.
- Transdermal compositions are typically formulated as a topical ointment or cream containing the active ingredient(s), generally in an amount ranging from about 0.01 to about 20% by weight, preferably from about 0.1 to about 20% by weight, preferably from about 0.1 to about 10% by weight, and more preferably from about 0.5 to about 15% by weight.
- the active ingredients When formulated as a ointment, the active ingredients will typically be combined with either a paraffinic or a water-miscible ointment base. Alternatively, the active ingredients may be formulated in a cream with, for example an oil-in-water cream base.
- Such transdermal formulations are well-known in the art and generally include additional ingredients to enhance the dermal penetration of stability of the active ingredients or the formulation. All such known transdermal formulations and ingredients are included within the scope provided herein.
- the compounds provided herein can also be administered by a transdermal device.
- transdermal administration can be accomplished using a patch either of the reservoir or porous membrane type, or of a solid matrix variety.
- the compounds of this invention can also be administered in sustained release forms or from sustained release drug delivery systems.
- sustained release materials can be found in Remington 's Pharmaceutical Sciences.
- the present invention also relates to the pharmaceutically acceptable salts of compounds of Formula I.
- the following formulation examples illustrate representative pharmaceutical compositions that may be prepared in accordance with this invention. The present invention, however, is not limited to the following pharmaceutical compositions.
- a compound of the invention may be dissolved or suspended in a buffered sterile saline injectable aqueous medium to a concentration of approximately 5 mg/mL.
- Bolaamphiphilic vesicles may have certain advantages over conventional liposomes as potential vehicles for drug delivery.
- Bolavesicles have thinner membranes than comparable liposomal bilayer, and therefore possess bigger inner volume and hence higher encapsulation capacity than liposomes of the same diameter.
- bolavesicles are more physically-stable than conventional liposomes, but can be destabilized in a triggered fashion (e.g., by hydrolysis of the headgroups using a specific enzymatic reaction) thus allowing controlled release of the encapsulated material at the site of action (i.e., drug targeting).
- siRNAs designed to silence different oncogenic pathways can be used for cancer therapy.
- non-modified naked non-modified siRNAs are unstable, thus having a short half-life in the blood stream and encounter difficulties in crossing biological membranes due to their negative charge. Therefore, siRNAs may not be used efficiently to silence genes.
- These obstacles can be overcome by using siRNAs complexed with bolaamphiphiles, consisting of two positively charged head groups that flank a hydrophobic chain.
- Bolaamphiphiles have relatively low toxicities, long persistence in the blood stream, and most importantly, can form poly-cationic micelles in aqueous conditions thus, becoming amenable to association with negatively charged siRNAs.
- the compounds provided herein may be isolated and purified by known standard procedures. Such procedures include (but are not limited to) recrystallization, column chromatography or HPLC. The following schemes are presented with details as to the preparation of representative substituted biarylamides that have been listed herein.
- the compounds provided herein may be prepared from known or commercially available starting materials and reagents by one skilled in the art of organic synthesis.
- the enantiomerically pure compounds provided herein may be prepared according to any techniques known to those of skill in the art. For instance, they may be prepared by chiral or asymmetric synthesis from a suitable optically pure precursor or obtained from a racemate by any conventional technique, for example, by chromatographic resolution using a chiral column, TLC or by the preparation of diastereoisomers, separation thereof and regeneration of the desired enantiomer. See, e.g., "Enantiomers, Racemates and Resolutions," by J. Jacques, A. Collet, and S.H. Wilen, (Wiley-Interscience, New York, 1981); S.H. Wilen, A. Collet, and J.
- an enantiomerically pure compound of formula (1) may be obtained by reaction of the racemate with a suitable optically active acid or base.
- suitable acids or bases include those described in Bighley et ah, 1995, Salt Forms of Drugs and
- Enantiomerically pure compounds can also be recovered either from the crystallized diastereomer or from the mother liquor, depending on the solubility properties of the particular acid resolving agent employed and the particular acid enantiomer used.
- the identity and optical purity of the particular compound so recovered can be determined by polarimetry or other analytical methods known in the art.
- the diasteroisomers can then be separated, for example, by chromatography or fractional crystallization, and the desired enantiomer regenerated by treatment with an appropriate base or acid.
- the other enantiomer may be obtained from the racemate in a similar manner or worked up from the liquors of the first separation.
- enantiomerically pure compound can be separated from racemic compound by chiral chromatography.
- Various chiral columns and eluents for use in the separation of the enantiomers are available and suitable conditions for the separation can be empirically determined by methods known to one of skill in the art.
- Exemplary chiral columns available for use in the separation of the enantiomers provided herein include, but are not limited to CHIRALCEL® OB, CHIRALCEL® OB-H, CHIRALCEL® OD, CHIRALCEL® OD-H, CHIRALCEL® OF, CHIRALCEL® OG, CHIRALCEL® OJ and CHIRALCEL® OK.
- BBB blood brain barrier
- BCECs brain capillary endothelial cells
- boloamphiphles or bolaamphiphilic compounds of the invention can be synthesized following the procedures described previously (see below).
- the carboxylic group of methyl vernolate or vernolic acid was interacted with aliphatic diols to obtain bisvernolesters.
- the epoxy group of the vernolate moiety located on C12 and CI 3 of the aliphatic chain of vernolic acid, was used to introduce two ACh headgroups on the two vicinal carbons obtained after the opening of the oxirane ring.
- the ACh head group was attached to the vernolate skeleton through the nitrogen atom of the choline moiety.
- the bolaamphiphile was prepared in a two-stage synthesis: First, opening of the epoxy ring with a haloacetic acid and, second, quaternization with the N,N- dimethylamino ethyl acetate.
- the bolaamphiphile was prepared in a three-stage synthesis, including opening of the epoxy ring with glutaric acid, then esterification of the free carboxylic group with N,N-dimethyl amino ethanol and the final product was obtained by quaternization of the head group, using methyl iodide followed by exchange of the iodide ion by chloride using an ion exchange resin.
- Each bolaamphiphile was characterized by mass spectrometry, NMR and IR spectroscopy. The purity of the two bolaamphiphiles was >97% as determined by HPLC.
- Materials Diphenyl ether, 1,2-hexadecanediol, oleic acid, oleylamine, and carboxyfluorescein (CF) were purchased from Sigma Aldrich (Rehovot, Israel). Chloroform and ethanol were purchased from Bio-Lab Ltd. Jerusalem, Israel. l,2-dimyristoyl-sn-glycero-3- phospho-(l'-rac-glycerol) (DMPG), l,2-dimyristoyl-sn-glycero-3-phosphoethanolamine
- DMPE l,2-dimyristoyl-sn-glycero-3-phosphocholine
- DMPC l,2-dimyristoyl-sn-glycero-3-phosphocholine
- cholesterol CHOL
- CHEMS cholesteryl hemisuccinate
- the diacetylenic monomer 10,12- tricosadiynoic acid was purchased from Alfa Aesar (Karlsruhe, Germany), and purified by dissolving the powder in chloroform, filtering the resulting solution through a 0.45 ⁇ nylon filter (Whatman Inc., Clifton, NJ, USA), and evaporation of the solvent.
- l-(4 trimethylammoniumphenyl)-6-phenyl-l,3,5-hexatriene was purchased from Molecular Probes Inc. (Eugene, OR, USA).
- bolaamphiphilic compounds of the invention which are prepared in according the methods described herein or can be prepared following the methods described in the literature or following the methods known to those skilled in the art, are given in Table 1.
- Vesicles are prepared by dissolving 10 mg/ml bolaamphiphile in chloroform together with 2.1 mg/ml cholesteryl hemisuccinate and 1.6 mg/ml cholesterol. The organic solvent is evaporated under nitrogen and then is kept under vacuum overnight. The thin film that was formed is hydrated by RNAs-free water to a concentration of 10 mg/ml of the
- bolaamphiphile and the suspension which was formed after mixing is sonicated to form 100 nm vesicles at a concentration of 10 mg/ml of bolaamphiphile. These vesicles are used to form the complex with the siRNA duplex as described below.
- the siRNA duplex is mixed with pre-prepared vesicles (concentration of the siRNA ranges between 100 nM and 10 ⁇ , and the concentration of the bolaamphiphile ranges between 200 ⁇ g/ml and 1 mg/ml).
- concentration of the siRNA ranges between 100 nM and 10 ⁇
- concentration of the bolaamphiphile ranges between 200 ⁇ g/ml and 1 mg/ml.
- the vesicles that are prepared at a concentration of the bolaamphiphile of 10 mg/ml are diluted before mixing to a concentration that ranges between 200 ⁇ g/ml and 1 mg/ml.
- the mixture is allowed to stand on ice for 30 min-24 hours.
- All transfections are performed using bolaamphiphiles of the invention.
- concentration of siRNA (200 nM- 10 ⁇ ) to bolaamphiphiles (200 ⁇ g/ml-l mg/ml) can be 10X- 1000X.
- the transfection is done with either eGFP siRNA that can silence the eGFP gene, which is expressed by the transfected cells.
- siRNA-fluorescent probe conjugate to determine if the siRNA penetrated into the cells.
- the fluorescent probe could be FITC or Alexa Flour such as AF-555.
- the cell media Prior to each transfection, the cell media is swapped with growth medium without serum and the prepared siRNA/ bolaamphiphile vesicles complexes (as described in Example 2) are diluted to the final concentration of IX. The cells are incubated for 5-12 hours followed by changing the media to the growth medium.
- siRNA/bolaamphiphile vesicles complex prepared by mixing siR A-AF555 conjugate with bolaamphiphilic vesicles (as described in example 2 above), was injected intravenously to mice via the tail vein.
- the injected dose ranged between 20 mg/kg to 40 mg/kg of the bolaamphiphile.
- Mice were sacrificed 30 min and 2 hours after the injection and organs were washed by saline and fluorescence imaging of the isolated organs was performed.
- bolaamphiles have the potential to be used as the carriers for siRNA delivery.
- Bola/siRNA vesicle complexes significantly increase the stability of siRNAs, provided resistence against nucleases activity and provide excellent intracellular uptake followed by a specific gene silencing.
- the extent of protection of siRNA can be altered by simply changing the carrier.
- nanoparticles for specific delivery of siRNA and other therapeutics to targeted cells Methods 54, 204-214 (2011).
- RNA interference is mediated by 21- and 22- nucleotide RNAs. Genes Dev 15, 188-200 (2001).
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EP13834565.7A EP2892508A4 (en) | 2012-09-04 | 2013-09-04 | Bolaamphiphilic compounds, compositions and uses thereof |
IL237539A IL237539A0 (en) | 2012-09-04 | 2015-03-03 | Bolaamphiphilic compounds, compositions and uses thereof |
US14/638,437 US20150246138A1 (en) | 2012-09-04 | 2015-03-04 | Bolaamphiphilic compounds, compositions and uses thereof |
US15/655,338 US20180036376A1 (en) | 2012-09-04 | 2017-07-20 | Bolaamphiphilic compounds, compositions and uses thereof |
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WO2003047499A2 (en) * | 2001-12-04 | 2003-06-12 | Ben Gurion University Of The Negev Research And Development Authority | Amphiphilic compounds and vesicles/liposomes for organ-specific drug targeting |
WO2010128504A2 (en) | 2009-05-04 | 2010-11-11 | Ben-Gurion University Of The Negev Research And Development Authority | Nano-sized particles comprising multi-headed amphiphiles for targeted drug delivery |
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WO2010128504A2 (en) | 2009-05-04 | 2010-11-11 | Ben-Gurion University Of The Negev Research And Development Authority | Nano-sized particles comprising multi-headed amphiphiles for targeted drug delivery |
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CHALON SYLVIE ET AL.: "Pharmacological Characterization of (E)-N-(4-Fluorobut-2-enyl)-2beta-carbomethoxy-3beta-(4'tolyl)nortropane (LBT-999) as a Highly Promising Fluorinated Ligand for the Dopamine Transporter.", THE JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS, vol. 317, no. 1, 2006, pages 147 - 152, XP055238611 * |
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POPOV MARY ET AL.: "Site-directed decapsulation of bolaamphiphilic vesicles with enzymatic cleavable surface groups", JOURNAL OF CONTROLLED RELEASE, vol. 160, no. 2, 29 December 2011 (2011-12-29), pages 306 - 314, XP028926636, DOI: doi:10.1016/j.jconrel.2011.12.022 |
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