WO2014028334A1 - Selective mmp inhibitors - Google Patents

Selective mmp inhibitors Download PDF

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Publication number
WO2014028334A1
WO2014028334A1 PCT/US2013/054368 US2013054368W WO2014028334A1 WO 2014028334 A1 WO2014028334 A1 WO 2014028334A1 US 2013054368 W US2013054368 W US 2013054368W WO 2014028334 A1 WO2014028334 A1 WO 2014028334A1
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mono
optionally substituted
substituents
alkyl
poly
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PCT/US2013/054368
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French (fr)
Inventor
Alastair J.J. Wood
David Anthony DICHEK
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Symphony Evolution, Inc.
University Of Washington Through Its Center For Commercialization
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Publication of WO2014028334A1 publication Critical patent/WO2014028334A1/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/16Amides, e.g. hydroxamic acids
    • A61K31/165Amides, e.g. hydroxamic acids having aromatic rings, e.g. colchicine, atenolol, progabide
    • A61K31/166Amides, e.g. hydroxamic acids having aromatic rings, e.g. colchicine, atenolol, progabide having the carbon of a carboxamide group directly attached to the aromatic ring, e.g. procainamide, procarbazine, metoclopramide, labetalol
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/16Amides, e.g. hydroxamic acids
    • A61K31/18Sulfonamides
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/496Non-condensed piperazines containing further heterocyclic rings, e.g. rifampin, thiothixene

Definitions

  • the present invention is in the field of methods for treating and preventing atherosclerotic plaque development and rupture (e.g., carotid arterial plaque development and rupture) and resultant thromboembolism, stroke, myocardial infarction, and acute coronary syndromes through administration of the compounds disclosed herein.
  • atherosclerotic plaque development and rupture e.g., carotid arterial plaque development and rupture
  • resultant thromboembolism e.g., stroke, myocardial infarction, and acute coronary syndromes
  • Atherosclerosis is a chronic inflammatory response in the walls of arterial blood vessels, caused largely by the accumulation of macrophage white blood cells and promoted by low-density lipoproteins without adequate removal of fats and cholesterol from the macrophages by functional high density lipoproteins (HDL).
  • HDL high density lipoproteins
  • Artery walls can thicken as a result of the accumulation of multiple plaques within the arteries, formed from fatty materials such as cholesterol.
  • the precipitating event of myocardial infarction (MI) and acute coronary syndromes (ACS) is the hemorrhage into and rupture of an unstable atherosclerotic plaque.
  • MI myocardial infarction
  • ACS acute coronary syndromes
  • Atherosclerotic plaques are separated into two broad categories: stable and unstable (i.e. , vulnerable). Unstable plaques are rich in macrophages and foam cells and the extracellular matrix separating the lesion from the arterial lumen is usually weak and prone to rupture.
  • Ruptures of the fibrous cap expose thrombogenic material such as collagen to the circulation and eventually induce thrombus formation in the lumen.
  • intraluminal thrombi can occlude arteries (i.e., coronary occlusion) or detach and move into the circulation and eventually occlude smaller downstream branches causing thromboembolism (i.e., stroke).
  • the proteolytic effects of MMPs in atherosclerotic plaques may contribute to the tissue breakdown and result in plaque development rupture and activation of the thrombotic cascade that leads to coronary artery occlusion.
  • Current therapies have focused on preventing the thrombotic events that occur after plaque rupture by the use of drugs such as aspirin and other antithrombotic agents.
  • MI myocardial infarction
  • ACS acute coronary syndromes
  • MMP-1 has been expected to promote plaque rupture, (see Schwartz et al; Arterioscler. Thromb. Vase. Biol. 2007, 27, 705).
  • MMP inhibition by an optionally MMP-1 sparing MMP antagonist is particularly useful for plaque stabilization.
  • MMP-1 sparing MMP antagonist is particularly useful for plaque stabilization.
  • such an approach can limit the need for antithrombotic drugs and their resultant toxicity.
  • the present invention generally provides methods of atherosclerotic plaque stabilization through inhibition of matrix metalloproteinases via administration of the compounds disclosed herein, which are selective MMP antagonists (e.g., selective for MMP-2 and/or MMP-9) and/or MMP-1 sparing.
  • MMP antagonists e.g., selective for MMP-2 and/or MMP-9
  • MMP-1 sparing e.g., MMP-1 sparing.
  • the invention also comprises a method of inhibiting atherosclerotic lesion formation and growth as well as reducing aortic intimal lipid accumulation in mammals comprising administering an effective amount of a compound of the invention to a mammal.
  • FIGs 1A-1D display the results of in vivo experiments demonstrating that the selective MMP inhibitor compound 15 decreases aortic root atherosclerosis in uPA- ⁇ overexpressing (SR-uPA + 0 ) mice.
  • SR-uPA +/0 mice were treated for 10 weeks with either vehicle or with compound 15 at one of three doses.
  • Fig. 1 A displays mean intimal area of aortic root lesions.
  • Fig. IB displays circumference of the aortic root at the level of the internal elastic lamina (IEL).
  • Fig. 1 C displays the mean percentage of aortic root intimal lesions staining positively for oil red O.
  • Fig. ID displays the mean percentage of aortic root intimal lesions staining positively for the macrophage marker Mac-2. Data points are. individual mice; bars are group means.
  • L 1 is -C(O)-, -S(0) 2 -, or -(CH 2 ) n -;
  • R 1 is -H, -OR 11 , -(CH 2 )nR n , -C(0)R u , or -NR 12 R 13 ;
  • R 11 , R 12 , and R 13 independently are b) saturated or mono- or poly- unsaturated Cs-Cn-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one or two R 50 substituents;
  • Ci-Ce-alkyl C2-C6-alkenyl, C2-C6-alkynyl, or -C(0)H, each of which is optionally substituted with one, two or three substituents independently selected from R 50 and saturated or mono- or poly- unsaturated C 5 -Ci4-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two or three R 50 substituents;
  • R 12 and R 13 together with the N to which they are covalently bound, a C5-C6 heterocycle optionally containing a second annular heteroatom and optionally substituted with one or two R 50 substituents;
  • R 2 is -R 2, -L 2 -R 22 ;
  • R 21 is saturated or mono- or poly- unsaturated C 5 -Ci4-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three R 50 substituents;
  • L 2 is -0-, -C(O)-, -CH2-, -NH-, -S(0 2 )- or a direct bond;
  • R 22 is saturated or mono- or poly- unsaturated Cs-Cu-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three R 50 substituents;
  • R 50 is R 51 -L 3 -(CH 2 ) admir-;
  • L 3 is -0-, -NH-, -S(0)o-2-, -C(0)-, -C(0)0-, -C(0)NH-, -0C(0)-, -NHC(O)-, -C 6 H 4 -, or a direct bond;
  • R 51 is -H, Ci-Ce-alkyl, C 2 -C 6 -alkenyl, C 2 -C 6 -alkynyl, halo, -CF 3 , -OCF 3 , -OH, -NH 2 , mono-Ci-C 6 alkyl amino, di-C r C 6 alkyl amino, -SH, -C0 2 H, -CN, -N0 2 , -SO 3 H, or a saturated or mono- or poly- unsaturated Cs-Cn-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three substituents;
  • n 0, 1, 2, or 3;
  • L 1 is -C(O)- or -S(0)2-.
  • L 1 is -C(O)- and R 1 is -OR 11 or -(CH 2 ) n R u , -OCi-C 6 alkyl-mono-C,-C 6 alkyl amino, -Od-Cealkyl-di-C-Cealkyl amino, -OCj-Cealkyl-N-heterocyclyl, -Ci-C6alkyl-mono-Ci-C6alkyl amino, -Ci-C 6 alkyl-di- Ci-C6alkyl amino, or -Ci-C6alkyl-N-heterocyclyl.
  • R 1 is Ci-Ce- alkoxy-Ci-C6-alkoxy; and in a still more specific example R 1 is methoxyethoxy.
  • L 1 is -S(0)2-, and R 1 is -NR 12 R 13 , -(CH2)nR n , -C,-C 6 alkyl-mono-Ci-C 6 alkyl amino, -C,-C 6 alkyl-di-Ci-C 6 alkyl amino, or -Ci-C6alkyl-N-heterocyclyl.
  • L 2 is -0-.
  • R 2 is phenoxyphenyl wherein each phenyl is optionally substituted with one or two R 50 substituents.
  • the R 50 substituents are halo.
  • the saturated or mono- or poly- unsaturated Cs-Cn-mono- or fused poly- cyclic hydrocarbyl containing one or two annular heteroatoms per ring is selected from the group consisting of morpholinyl, piperazinyl, homopiperazinyl, pyrrolidinyl, piperidinyl, homopiperidinyl, furyl, thienyl, pyranyl, isobenzofuranyl, chromenyl, pyrrolyl, imidazolyl, isoxazolyl, pyridyl, pyrazinyl, pyrimidinyl, oxadiazolyl, indolyl, quinolinyl, carbazolyl, acrydinyl, and furazanyl, optionally substituted with one or two R 50 substituents.
  • R 12 and R 13 together with the N to which they are covalently bound, form a heterocycle selected from the group consisting of morpholinyl, piperazinyl, homopiperazinyl, pyrrolidinyl, piperidinyl, homopiperidinyl, pyrrolyl, imidazolyl, isoxazolyl, pyridyl, pyrazinyl, pyrimidinyl, oxadiazolyl, indolyl, quinolinyl, carbazolyl, acrydinyl, and furazanyl, optionally substituted with one or two R 50 substituents.
  • a heterocycle selected from the group consisting of morpholinyl, piperazinyl, homopiperazinyl, pyrrolidinyl, piperidinyl, homopiperidinyl, pyrrolyl, imidazolyl, isoxazolyl, pyridyl, pyrazinyl, pyrimidin
  • each R 14 is independently selected from -H, -(CH 2 )i-3CC>2H, alkyl, alkoxy, alkenyl, aryl, heteroaryl, arylalkyl, and heteroarylalkyl;
  • R 2 is selected from Table 2;
  • the invention comprises methods for treating atherosclerosis using compounds according to formula IV
  • Ar is aryl or heteroaryl, each optionally substituted
  • R 15 is fluoro
  • p 0, 1, 2, or 3;
  • L 1 is -C(O)-, -S(0) 2 -, or -(CH 2 ) deliberately-;
  • L 4 is nothing or -0-
  • R 1 is -H, -OR 1 1 , -(CH2)nR U , -C(0)R n , or -NR 12 R 13 ;
  • R 11 , R 12 , and R 13 independently are a) R 50 ;
  • R 50 is R 5I -L 3 -(CH 2 ) admir-;
  • L 3 is -0-, -NH-, -S(0)o-2-, -C(O)-, -C(0)0-, -C(0)NH-, -OC(O)-, -NHC(O)-, -C 6 H 4 -, or a direct bond;
  • R 51 is -H, Ci-Ce-alkyl, C 2 -C 6 -alkenyl, C 2 -C 6 -alkynyl, halo, -CF 3 , -OCF3, -OH; -NH 2 , mono-Ci-Cealkyl amino, di-Ci-C 6 alkyl amino, -SH, -C0 2 H, -CN, -N0 2 , -SO3H, or a saturated or mono- or poly- unsaturated Cs-Cu-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three substituents;
  • n 0, 1, 2, or 3;
  • an O or S is not singly bonded to another O or S in a chain of atoms.
  • each R is independently selected from -H, -(CH2)i-3CC>2H, alkyl, alkoxy, alkenyl, aryl, heteroaryl, arylalkyl, and heteroarylalkyl.
  • Ar is selected from the group consisting of phenyl, biphenyl, napthyi, tetrahydronaphthalene, chromen-2- one, dibenzofuran, pyryl, furyl, pyridyl, 1 ,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
  • Ar is phenyl, optionally substituted, with at least one halogen.
  • p is at least two.
  • Ar is selected from the group consisting of phenyl, biphenyl, napthyl, tetrahydronaphthalene, chromen-2-one, dibenzofuran, pyryl, furyl, pyridyl, 1 ,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
  • Ar is optionally substituted tetrahydro-naphthalene.
  • Ar is selected from the group consisting of phenyl, biphenyl, napthyl, tetrahydronaphthalene, chromen-2-one, dibenzofuran, pyryl, furyl, pyridyl, 1 ,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
  • the compound of structural formula IVc has the structure:
  • the compound of structural formula IV is of formula V
  • Ar is selected from the group consisting of phenyl, biphenyl, napthyl, tetrahydronaphthalene, chromen-2-one, dibenzofuran, pyryl, furyl, pyridyl, 1 ,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
  • Ar is phenyl, optionally substituted, with at least one halogen.
  • the compound of structural formula V has the absolute stereochemistry is according to formula VI,
  • the invention comprises a method for treating atherosclerosis comprising administering to a patient in need of such treatment, a therapeutically effective amount of a pharmaceutical composition comprising a compound as described in any.of the embodiments described in the preceding paragraphs of the first or second aspects of the invention, optionally with a pharmaceutically acceptable carrier.
  • the invention comprises method for treating, preventing, or reducing the risk of carotid, aortic, or other arterial plaque development and rupture, atherosclerosis, thromboembolism, stroke, acute coronary syndromes, and/or myocardial infarction in a patient in need of such treatment, comprising administering to the patient a therapeutically effective amount of a compound described in any of the embodiments of the first and second aspects of the invention, optionally with a pharmaceutically acceptable carrier.
  • the invention comprises a method of inhibiting atherosclerotic lesion formation and growth as well as reducing aortic intimal lipid accumulation in a patient comprising administering to the patient a therapeutically effective amount of a compound described in any of the embodiments of the first and second aspects of the invention, optionally with a pharmaceutically acceptable carrier.
  • Patient refers to a mammal, including a human.
  • the invention also comprises all the foregoing methods in which the compound is a pharmaceutically acceptable salt.
  • the compound is a pharmaceutically acceptable salt.
  • the methods disclosed herein is the use of the Mg 2+ salt of any of the genera and specific compounds disclosed herein.
  • the compound is the Mg 2+ salt of the compound
  • alkyl refers inclusively to a univalent Ci to C20 (unless explicitly stated otherwise) saturated straight, branched, cyclic, and combinations thereof alkane moiety and specifically includes methyl, ethyl, propyl, isopropyl, butyl, isobutyl, t-butyl, pentyl, cyclopentyl, isopentyl, neopentyl, hexyl, isohexyl, cyclohexyl, 3-methylpentyl, 2,2- dimethylbutyl, and 2,3-dimethylbutyl.
  • specific cycloalkyls are defined (e.g.
  • alkyl includes, e.g., C3-C8 cycloalkyl.
  • alkyl also includes, e.g. , C3-C8 cycloalkyl CI-CG alkyl, which is a C1-C6 alkyl having a C3-C8 cycloalkyl terminus.
  • AlkyPs can be optionally substituted with any appropriate group, including but not limited to one or more moieties selected from halo, hydroxyl, amino, arylalkyl, heteroarylalkyl, alkylamino, arylamino, alkoxy, aryloxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, or phosphonate, either unprotected, or protected as necessary, as known to those skilled in the art or as taught, for example, in Greene, et al, "Protective Groups in Organic Synthesis," John Wiley and Sons, Second Edition, 1991.
  • alkoxy refers to the group -0-(substituted alkyl), the substitution on the alkyl group generally containing more than only carbon (as defined by alkoxy).
  • One ⁇ exemplary substituted alkoxy group is "polyalkoxy" or -O- (optionally substituted alkylene)-(optionally substituted alkoxy), and includes groups such as -OCH2CH 2 OCH 3 , and glycol ethers such as polyethyleneglycol and -0(CH 2 CH 2 0) X CH 3 , where x is an integer of between about 2 and about 20, in another example, between about 2 and about 10, and in a further example between about 2 and about 5.
  • Another exemplary substituted alkoxy group is hydroxyalkoxy or -0CH 2 (CH 2 ) y 0H, where y is for example an integer of between about 1 and about 10, in another example y is an integer of between about 1 and about 4.
  • alkenyl refers to a univalent C 2 -C6 straight, branched, or in the case of C5.8, cyclic hydrocarbon with at least one double bond.
  • aryl refers to a univalent phenyl, biphenyl, napthyl, and the like.
  • the aryl group can be optionally substituted with any suitable group, including but not limited to one or more moieties selected from halo, hydroxyl, amino, alkylamino, arylamino, alkoxy, aryloxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, or phosphonate, either unprotected, or protected as necessary, as known to those skilled in the art, for example, as taught in Greene, et al., "Protective Groups in Organic Synthesis," John Wiley and Sons, Second Edition, 1991).
  • substitution on an aryl can include fused rings such as in tetrahydronaphthalene, chromen-2-one, dibenzofuran, and the like.
  • the aryl portion of the tetrahydronaphthalene is attached to the portion of a molecule described as having an aryl group.
  • heteroatom means O, S, P, or N.
  • heterocycle refers to a cyclic alkyl, alkenyl, or aryl moiety as defined above wherein one or more ring carbon atoms is replaced with a heteroatom.
  • heteroaryl specifically refers to an aryl that includes at least one of sulfur, oxygen, and nitrogen in the aromatic ring.
  • Non-limiting examples are pyrrolyl, furyl, pyridyl, 1,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl.
  • halo refers to chloro, fluoro, iodo, or bromo.
  • salts or complexes refers to salts or complexes that retain the desired biological activity of the above-identified compounds and exhibit minimal or no undesired toxicological effects.
  • examples of such salts include, but are not limited to acid addition salts formed with inorganic acids (for example, hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, nitric acid, and the like), and salts formed with organic acids such as acetic acid, oxalic acid, tartaric acid, succinic acid, malic acid, ascorbic acid, benzoic acid, tannic acid, pamoic acid, alginic acid, polyglutamic acid, naphthalenesulfonic acid, naphthalenedisulfonic acid, and polygalacturonic acid.
  • inorganic acids for example, hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, nitric acid, and the like
  • organic acids such as acetic acid, oxalic acid,
  • the compounds can also be administered as pharmaceutically acceptable quaternary salts known by those skilled in the art, which specifically include the quaternary ammonium salt of the formula -NR + Z-, wherein R is hydrogen, alkyl, or benzyl, and Z is a counterion, including chloride, bromide, iodide, -O-alkyl,
  • toluenesulfonate methylsulfonate, sulfonate, phosphate, or carboxylate (such as benzoate, succinate, acetate, glycolate, maleate, malate, citrate, tartrate, ascorbate, benzoate, cinnamoate, mandeloate, benzyloate, and diphenyl-acetate).
  • carboxylate such as benzoate, succinate, acetate, glycolate, maleate, malate, citrate, tartrate, ascorbate, benzoate, cinnamoate, mandeloate, benzyloate, and diphenyl-acetate.
  • pharmaceutically active derivative refers to any compound that upon administration to the recipient, is capable of providing directly or indirectly, the compounds disclosed herein.
  • two adjacent carbon containing groups on an aromatic system may be fused together to form a ring structure.
  • the fused ring structure may contain heteroatoms and may be substituted with one or more substitution groups "R".
  • substitution groups "R" may be substituted with one or more substitution groups "R"
  • each positional carbon may contain two substitution groups, e.g. R and R'.
  • Some of the compounds used in the present invention may have imino, amino, oxo or hydroxy substituents off aromatic heterocyclic ring systems.
  • imino, amino, oxo or hydroxy substituents may exist in their corresponding tautomeric form, i.e., amino, imino, hydroxy or oxo, respectively.
  • ACD Name available from Advanced Chemistry Development, Inc. of Toronto, Canada. This software derives names from chemical structures according to systematic application of the nomenclature rules agreed upon by the International Union of Pure and Applied Chemistry (IUPAC), International Union of Biochemistry and Molecular Biology (IUBMB), and the Chemical Abstracts Service (CAS).
  • IUPAC International Union of Pure and Applied Chemistry
  • IUBMB International Union of Biochemistry and Molecular Biology
  • CAS Chemical Abstracts Service
  • the compounds used in the present invention, or their pharmaceutically acceptable salts may have asymmetric carbon atoms, oxidized sulfur atoms or quaternized nitrogen atoms in their structure.
  • the compounds used in the present invention and their pharmaceutically acceptable salts may exist as single stereoisomers, racemates, and as mixtures of enantiomers and diastereomers.
  • the compounds may also exist as geometric isomers. All such single stereoisomers, racemates and mixtures thereof, and geometric isomers are intended to be within the scope of this invention.
  • optically active (R)- and (S)- isomers may be prepared using chiral synthons or chiral reagents, or resolved using conventional techniques.
  • the R- and S-isomers may be resolved by methods known to one skilled in the art, for example by: formation of diastereoisomeric salts or complexes which may be separated, for example, by crystallization; via formation of diastereoisomeric derivatives which may be separated, for example, by crystallization, gas-liquid or liquid chromatography; selective reaction of one enantiomer with an enantiomer-specific reagent, for example enzymatic oxidation or reduction, followed by separation of the modified and unmodified enantiomers; or gas-liquid or liquid chromatography in a chiral environment, for example on a chiral support, such as silica with a bound chiral ligand or in the presence of a chiral solvent.
  • enantiomer may be synthesized by asymmetric synthesis using optically active reagents, substrates, catalysts or solvents, or by converting on enantiomer to the other by asymmetric transformation.
  • enantiomers enriched in a particular enantiomer, the major component enantiomer may be further enriched (with concomitant loss in yield) by recrystallization.
  • galkylaryl optional substitution may occur on both the "Ci-salkyl” portion and the “aryl” portion of the molecule.
  • Substituted alkyl, aryl, and heterocyclyl refer respectively to alkyl, aryl, and heterocyclyl, wherein one or more (for example up to about 5, in another example, up to about 3) hydrogen atoms are replaced by a substituent independently ⁇ selected from, but not limited to: halogen, cyano, nitro, oxo, alkyl, haloalkyl (e.g., fluoroalkyl, trifluoromethyl), alkylenedioxy (e.g.
  • cycloalkyl, cycloalkylalkyl, heterocyclylalkyl, heterocyclyl, aryl (e.g., phenyl), arylaikyl (e.g., benzyl), heteroaryl, heteroarylalkyl, -OR 0 (e.g., aryloxy or arylalkyloxy, such as, phenoxy or benzyloxy), -SR°, -N(R°) 2 , -C(0)R°, -C(0)OR°, -C(0)N(R°) 2 , -C( NR°)N(R°) 2 , - OC(0)R°, -OC(0)OR°, -OC(0)N(R°) 2 (e.g.
  • each R° is independently hydrogen, Ci. 6 alkyl, haloalkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, cycloalkylalkyl, heterocyclylalkyl, arylaikyl, or heteroarylalkyl.
  • each R° is independently hydrogen or Ci-6alkyl, or arylaikyl (e.g., benzyl).
  • each R° is independently hydrogen or Ci. 6 alkyl.
  • Prodrug refers to compounds that are transformed (typically rapidly) in vivo to yield the parent compound of the above formulae, for example, by hydrolysis in blood.
  • Common examples include, but are not limited to, ester and amide forms of a compound having an active form bearing a carboxylic acid moiety.
  • Examples of pharmaceutically acceptable esters of the compounds of this invention include, but are not limited to, alkyl esters (for example with between about 1 and about 6 carbons) wherein the alkyl group is a straight or branched chain. Acceptable esters also include cycloalkyl esters and arylaikyl esters such as, but not limited to benzyl.
  • Examples of pharmaceutically acceptable amides of the compounds of this invention include, but are not limited to, primary amides, and secondary and tertiary alkyl amides (for example with between about 1 and about 6 carbons).
  • Amides and esters of the compounds of the present invention may be prepared according to conventional methods. A thorough discussion of prodrugs is provided in T. Higuchi and V. Stella, "Pro-drugs as Novel Delivery Systems," Vol 14 of the A.C.S.
  • the compounds can exist in unsolvated as well as solvated forms with pharmaceutically acceptable solvents such as water, ethanol, and the like.
  • pharmaceutically acceptable solvents such as water, ethanol, and the like.
  • the solvated forms are considered equivalent to the unsolvated forms for the purposes of the present invention.
  • the term "individual” or “patient,” used interchangeably, refers to any animal, including mammals, preferably mice, rats, other rodents, rabbits, dogs, cats, swine, cattle, sheep, horses, or primates, and most preferably humans.
  • the phrase "therapeutically effective amount” refers to the amount of active compound or pharmaceutical agent that elicits the biological or medicinal response that is being sought in a tissue, system, animal, individual or human by a researcher, veterinarian, medical doctor or other clinician.
  • a therapeutically effective amount can be an amount suitable for treating or not.
  • preventing the disease for example, preventing a disease, condition or disorder in an individual who may be predisposed to the disease, condition or disorder but does not yet experience or display the pathology or symptomatology of the disease;
  • inhibiting the disease for example, inhibiting a disease, condition or disorder in an individual who is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder; or
  • symptomatology of the disease, condition or disorder i.e., reversing the pathology and/or symptomatology
  • decreasing the severity of disease i.e., decreasing the severity of disease.
  • treatment means (i) ameliorating the referenced disease state, for example, ameliorating a disease, condition or disorder in an individual who is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder (i.e., reversing or improving the pathology and/or symptomatology) such as decreasing the severity of disease; or (ii) eliciting the referenced biological effect.
  • diseases and disorders in which may be treated by use of agents that inhibit human metalloproteinase (MMP), such as MMP-9 and/or MMP-2 while optionally sparing MMP-1 And include, but are not limited to, atherosclerosis.
  • MMP human metalloproteinase
  • atherosclerosis e.g., carotid arterial plaque development and rupture
  • MMP inhibition will reduce the adverse consequences of plaque development and rupture including thromboembolism, stroke, myocardial infarction, and acute coronary syndromes.
  • Acute coronary syndrome (ACS) s usually one of three diseases involving the coronary arteries: ST elevation myocardial infarction, non ST elevation myocardial infarction, or unstable angina.
  • the therapeutic dosage of the compounds can vary according to, for example, the particular use for which the treatment is made, the manner of administration of the compound, the health and condition of the patient, and the judgment of the prescribing physician.
  • the proportion or concentration of a compound described herein in a pharmaceutical composition can vary depending upon a number of factors including dosage, chemical characteristics (e.g., hydrophobicity), and the route of administration.
  • the compounds described herein can be provided in an aqueous physiological buffer solution containing about 0.1 to about 10% w/v of the compound for parenteral administration. Some typical dose ranges are from about 1 ⁇ g/kg to about 1 g/kg of body weight per day.
  • the dose range is from about 0.01 mg/kg to about 100 mg/kg of body weight per day.
  • the dosage is likely to depend on such variables as the type and extent of progression of the disease or disorder, the overall health status of the particular patient, the relative biological efficacy of the compound selected, formulation of the excipient, and its route of administration. Effective doses can be extrapolated from dose-response curves derived from in vitro or animal model test systems.
  • the compounds useful in the methods of the invention can be prepared as described in U.S. Patent No. 7,629,341 , which is hereby incorporated by reference in its entirety.
  • the compounds herein can be tested for plaque stabilization and/or disruption according to models known to those skilled in the art; for example, the apoE ' murine atherosclerotic model described in Gough et al., J. Clin. Invest. 2006, 116, 59.
  • Table 5 below shows structure activity relationship data for selected compounds for use in the present invention when tested in vitro with various metalloproteases.
  • the abbreviations in Table 5 are defined as follows: MMP-1 stands for Fibroblast collagenase; MMP-2 stands for 72 kDa gelatinase (gelatinase A); and MMP-9 stands for 92 kDa gelatinase (gelatinase B).
  • Example 2 Compound 15 Significantly Reduces Atherosclerosis in the SR-uPA mouse model of atherosclerosis
  • mice Female Apoe ⁇ ' ⁇ mice were studied and were transgenic for a murine uPA gene.
  • SR-uPA + 0 mice were bred with nontransgenic Apoe ⁇ ' ⁇ mice to yield SR-uPA + 0 and non- transgenic SR-uPA 0 0 littermate controls.
  • the SR-uPA mice are known to have accelerated atherosclerosis, coronary artery occlusions, aortic root dilation, and sudden premature death that are driven by increased uPA enzymatic activity. 1 ' 5 They also have elevated MMP activity in their aortae, 4 which may play a role in accelerating atherosclerosis and in promoting aortic root dilation and plaque rupture.
  • mice were fed a high-fat diet (HFD: 21% fat, 0.15% cholesterol by weight) beginning at 5 - 6 wk of age and continuing for 10 wk.
  • HFD high-fat diet
  • Mice received one of three doses of compound 15 (125, 250, or 500 mg/kg or the vehicle alone by gavage daily. After 10 wk on HFD the Aortas were removed and examined.
  • Total cholesterol was measured in blood obtained from the retro-orbital plexus (Spectrum cholesterol assay, Abbott). Complete blood counts were perfonned by an outside laboratory (Phoenix Central Laboratory). Total MMP activity in aortic CM was measured with the Omni MMP activity assay. 4
  • Atherosclerosis in SR-uPA + 0 mouse model of atherosclerosis mice with a urokinase transgene driven by the scavenger receptor A promoter.
  • Treatment with all 3 doses of compound 15 reduced aortic root intimal lesion area (22 - 29%; P ⁇ 0.05 only for the lowest dose; Figure 1 A).
  • All 3 doses of compound 15 also yielded non-significant trends towards reduced aortic root circumference/dilatation (5 - 10%; P > 0.05 for all 3 ; Figure IB).
  • mice treated with compound and with vehicle-treated transgenic (SR-uPA + 0 ) mice are mean ⁇ SD except for % Sudanophilic lesions of thoracic aortic lumen surface area, which are median and (25%-75%) range, n indicates mice in each group.

Abstract

Described are methods for treating diseases by use of agents that selectively inhibit human metalloproteinases (MMP), such as MMP-9 and MMP-2, while optionally sparing MMP-1. Prevention of atherosclerotic plaque development and rupture and/or carotid arterial plaque development and rupture, by MMP inhibition can reduce the adverse consequences of plaque development and rupture including thromboembolism, stroke, myocardial infarction and acute coronary syndromes.

Description

SELECTIVE MMP INHIBITORS
BACKGROUND OF THE INVENTION
Field of the Invention
[0001] The present invention is in the field of methods for treating and preventing atherosclerotic plaque development and rupture (e.g., carotid arterial plaque development and rupture) and resultant thromboembolism, stroke, myocardial infarction, and acute coronary syndromes through administration of the compounds disclosed herein.
Summary of the Related Art
[0002] Atherosclerosis is a chronic inflammatory response in the walls of arterial blood vessels, caused largely by the accumulation of macrophage white blood cells and promoted by low-density lipoproteins without adequate removal of fats and cholesterol from the macrophages by functional high density lipoproteins (HDL). Artery walls can thicken as a result of the accumulation of multiple plaques within the arteries, formed from fatty materials such as cholesterol.
[0003] The precipitating event of myocardial infarction (MI) and acute coronary syndromes (ACS) is the hemorrhage into and rupture of an unstable atherosclerotic plaque. One of the proposed mechanisms for plaque rupture is MMP-induced tissue breakdown. Atherosclerotic plaques are separated into two broad categories: stable and unstable (i.e. , vulnerable). Unstable plaques are rich in macrophages and foam cells and the extracellular matrix separating the lesion from the arterial lumen is usually weak and prone to rupture. Ruptures of the fibrous cap expose thrombogenic material such as collagen to the circulation and eventually induce thrombus formation in the lumen. Upon formation, intraluminal thrombi can occlude arteries (i.e., coronary occlusion) or detach and move into the circulation and eventually occlude smaller downstream branches causing thromboembolism (i.e., stroke).
SUMMARY OF THE INVENTION
[0004] The proteolytic effects of MMPs in atherosclerotic plaques may contribute to the tissue breakdown and result in plaque development rupture and activation of the thrombotic cascade that leads to coronary artery occlusion. Current therapies have focused on preventing the thrombotic events that occur after plaque rupture by the use of drugs such as aspirin and other antithrombotic agents. Herein, a novel approach to the prevention of myocardial infarction (MI) and acute coronary syndromes (ACS) is described herein which utilizes the selective inhibition of the proteolytic MMP enzymes within atherosclerotic plaque to prevent plaque development and rupture and reduce the risk of myocardial damage from the resulting occlusion of the coronary artery.
[0005] Selective inhibition of the proteolytic MMP enzymes can lead to stabilization of plaque and be a useful treatment of atherosclerosis. For example, elevated levels of MMP-9 have been observed in patients with evidence of spontaneous embolization (see Loftus et al, Eur. J. Endovasc. Surg. 2001 , 21, 17.) Expression of MMP-9 murine atherosclerotic models elicited elastin degradation and induced significant plaque disruption, (see, Gough et al, J. Clin. Invest. 2006, 1 16, 59). And, in studies of carotid artery atherosclerotic disease, MMP-2 and MMP-9 have been strongly correlated with plaque instability, (see Heo et al., J. Clin. Neurol. 201 1 , 7, 69). In addition, a causal connection has been drawn between increased vascular MMP activity and intraplaque hemorrhage (see Hu et al, Circulation 2010, 121, 1637). For example, MMP-1 has been expected to promote plaque rupture, (see Schwartz et al; Arterioscler. Thromb. Vase. Biol. 2007, 27, 705).
[0006] Herein, it has been discovered that MMP inhibition by an optionally MMP-1 sparing MMP antagonist is particularly useful for plaque stabilization. Advantageously, such an approach can limit the need for antithrombotic drugs and their resultant toxicity.
[0007] Accordingly, the present invention generally provides methods of atherosclerotic plaque stabilization through inhibition of matrix metalloproteinases via administration of the compounds disclosed herein, which are selective MMP antagonists (e.g., selective for MMP-2 and/or MMP-9) and/or MMP-1 sparing. Prevention of atherosclerotic plaque development and rupture (e.g., carotid arterial plaque development and rupture) by MMP inhibition can reduce the adverse consequences of plaque development and rupture, including thromboembolism, stroke, myocardial infarction, and acute coronary syndromes. Consequently, the present invention also relates to methods for treating diseases resulting from atherosclerotic plaque development and rupture (e.g., carotid arterial plaque development and rupture) by use of agents that selectively inhibit human
metalloproteinases, such as MMP-9 and/or MMP-2, while optionally sparing MMP-1. In certain examples, the methods use agents that selectively inhibit MMP-9 and/or MMP-2, while sparing MMP-1. [0008] The invention also comprises a method of inhibiting atherosclerotic lesion formation and growth as well as reducing aortic intimal lipid accumulation in mammals comprising administering an effective amount of a compound of the invention to a mammal.
[0009] The foregoing merely summarizes certain aspects of the invention and is not intended to be limiting. All patents, applications, and publications recited herein are hereby incorporated by reference in their entirety.
BRIEF DESCRIPTION OF THE DRAWINGS
[0010] Figures 1A-1D display the results of in vivo experiments demonstrating that the selective MMP inhibitor compound 15 decreases aortic root atherosclerosis in uPA- ■ overexpressing (SR-uPA+ 0) mice. SR-uPA+/0 mice were treated for 10 weeks with either vehicle or with compound 15 at one of three doses. Fig. 1 A displays mean intimal area of aortic root lesions. Fig. IB displays circumference of the aortic root at the level of the internal elastic lamina (IEL). Fig. 1 C displays the mean percentage of aortic root intimal lesions staining positively for oil red O. Fig. ID displays the mean percentage of aortic root intimal lesions staining positively for the macrophage marker Mac-2. Data points are. individual mice; bars are group means.
DETAILED DESCRIPTION OF THE INVENTION
[0011] In a first aspect, the methods of the invention use a compound of structural formula I:
Figure imgf000005_0001
and pharmaceutically acceptable salts, esters, amides, and prodrugs thereof wherein L1 is -C(O)-, -S(0)2-, or -(CH2)n-;
R1 is -H, -OR11, -(CH2)nRn, -C(0)Ru, or -NR12R13;
R11, R12, and R13 independently are b) saturated or mono- or poly- unsaturated Cs-Cn-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one or two R50 substituents;
c) Ci-Ce-alkyl, C2-C6-alkenyl, C2-C6-alkynyl, or -C(0)H, each of which is optionally substituted with one, two or three substituents independently selected from R50 and saturated or mono- or poly- unsaturated C5-Ci4-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two or three R50 substituents;
or R12 and R13 together with the N to which they are covalently bound, a C5-C6 heterocycle optionally containing a second annular heteroatom and optionally substituted with one or two R50 substituents;
R2 is -R2,-L2-R22;
R21 is saturated or mono- or poly- unsaturated C5-Ci4-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three R50 substituents;
L2 is -0-, -C(O)-, -CH2-, -NH-, -S(02)- or a direct bond;
R22 is saturated or mono- or poly- unsaturated Cs-Cu-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three R50 substituents; and
R50 is R51-L3-(CH2)„-;
L3 is -0-, -NH-, -S(0)o-2-, -C(0)-, -C(0)0-, -C(0)NH-, -0C(0)-, -NHC(O)-, -C6H4-, or a direct bond;
R51 is -H, Ci-Ce-alkyl, C2-C6-alkenyl, C2-C6-alkynyl, halo, -CF3, -OCF3, -OH, -NH2, mono-Ci-C6alkyl amino, di-CrC6alkyl amino, -SH, -C02H, -CN, -N02, -SO3H, or a saturated or mono- or poly- unsaturated Cs-Cn-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three substituents;
wherein n is 0, 1, 2, or 3;
provided that an O or S is not singly bonded to another O or S in a chain of atoms. [0012] In one example of compounds of structural formula I, L1 is -C(O)- or -S(0)2-.
[0013] In another example of compounds of structural formula I, L1 is -C(O)- and R1 is -OR11 or -(CH2)nRu, -OCi-C6alkyl-mono-C,-C6alkyl amino, -Od-Cealkyl-di-C-Cealkyl amino, -OCj-Cealkyl-N-heterocyclyl, -Ci-C6alkyl-mono-Ci-C6alkyl amino, -Ci-C6alkyl-di- Ci-C6alkyl amino, or -Ci-C6alkyl-N-heterocyclyl. In a more specific example, R1 is Ci-Ce- alkoxy-Ci-C6-alkoxy; and in a still more specific example R1 is methoxyethoxy.
[0014] In another example of compounds of structural formula I, L1 is -S(0)2-, and R1 is -NR12R13, -(CH2)nRn, -C,-C6alkyl-mono-Ci-C6alkyl amino, -C,-C6alkyl-di-Ci-C6alkyl amino, or -Ci-C6alkyl-N-heterocyclyl.
[0015] In another example of compounds of structural formula I or any of the preceding embodiments thereof, L2 is -0-.
[0016] In another example of compounds of structural formula I or any of the preceding embodiments thereof, R2 is phenoxyphenyl wherein each phenyl is optionally substituted with one or two R50 substituents. In a more specific example, the R50 substituents are halo.
[0017] In another example of compounds of structural formula I or any of the preceding embodiments thereof, the saturated or mono- or poly- unsaturated Cs-Cn-mono- or fused poly- cyclic hydrocarbyl containing one or two annular heteroatoms per ring is selected from the group consisting of morpholinyl, piperazinyl, homopiperazinyl, pyrrolidinyl, piperidinyl, homopiperidinyl, furyl, thienyl, pyranyl, isobenzofuranyl, chromenyl, pyrrolyl, imidazolyl, isoxazolyl, pyridyl, pyrazinyl, pyrimidinyl, oxadiazolyl, indolyl, quinolinyl, carbazolyl, acrydinyl, and furazanyl, optionally substituted with one or two R50 substituents.
[0018] In another example of compounds of structural formula I or any of the preceding embodiments thereof, R12 and R13, together with the N to which they are covalently bound, form a heterocycle selected from the group consisting of morpholinyl, piperazinyl, homopiperazinyl, pyrrolidinyl, piperidinyl, homopiperidinyl, pyrrolyl, imidazolyl, isoxazolyl, pyridyl, pyrazinyl, pyrimidinyl, oxadiazolyl, indolyl, quinolinyl, carbazolyl, acrydinyl, and furazanyl, optionally substituted with one or two R50 substituents.
[0019] In another example, the compound of structural formula I or any of the preceding embodiments thereof, has the absolute stereochemistry of structural formula II:
Figure imgf000008_0001
[0020] In another example, the compound of structural formula I or any of the preceding embodiments thereof, have the absolute stereochemistry of structural formula III:
Figure imgf000008_0002
[0021] In another example, the compounds of structural formula I, II, or III, or any of the preceding embodiments thereof, wherein -L'-R1 is selected from Table 1 ;
Table 1
Figure imgf000008_0003
Figure imgf000009_0001
wherein each R14 is independently selected from -H, -(CH2)i-3CC>2H, alkyl, alkoxy, alkenyl, aryl, heteroaryl, arylalkyl, and heteroarylalkyl;
and R2 is selected from Table 2;
Table 2
Figure imgf000009_0002
Figure imgf000010_0001
Figure imgf000011_0001
Figure imgf000012_0001
Figure imgf000013_0001
Figure imgf000014_0001
Figure imgf000015_0001
Figure imgf000016_0001
Figure imgf000017_0001
Figure imgf000018_0001
[0023] In a second aspect, the invention comprises methods for treating atherosclerosis using compounds according to formula IV
Figure imgf000018_0002
and pharmaceutically acceptable salts, esters, amides, and prodrugs thereof wherein,
Z is -C(R15)=, -C(H)= or -N=;
Ar is aryl or heteroaryl, each optionally substituted;
R15 is fluoro;
p is 0, 1, 2, or 3;
L1 is -C(O)-, -S(0)2-, or -(CH2)„-;
L4 is nothing or -0-;
R1 is -H, -OR1 1, -(CH2)nRU, -C(0)Rn, or -NR12R13;
R11, R12, and R13 independently are a) R50;
b) saturated or mono- or poly- unsaturated Cs-Cu-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one or two R50 substituents; c) Ci-C6-alkyl, C2-C6-alkenyl, C2-C6-alkynyl, or -C(0)H, each of which is optionally substituted with one, two or three substituents independently selected from R50 and saturated or mono- or poly- unsaturated C5-Ci4-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two or three R50 substituents;
or R12 and R13 together with the N to which they are covalently bound, a C5-C6 heterocycle optionally containing a second annular heteroatom and optionally substituted with one or two R50 substituents; and
R50 is R5I-L3-(CH2)„-;
L3 is -0-, -NH-, -S(0)o-2-, -C(O)-, -C(0)0-, -C(0)NH-, -OC(O)-, -NHC(O)-, -C6H4-, or a direct bond;
R51 is -H, Ci-Ce-alkyl, C2-C6-alkenyl, C2-C6-alkynyl, halo, -CF3, -OCF3, -OH; -NH2, mono-Ci-Cealkyl amino, di-Ci-C6alkyl amino, -SH, -C02H, -CN, -N02, -SO3H, or a saturated or mono- or poly- unsaturated Cs-Cu-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three substituents;
wherein n is 0, 1, 2, or 3;
provided that an O or S is not singly bonded to another O or S in a chain of atoms.
[0024] In one example of the compound of structural formula IV, -L'-R1 is selected from Table 4,
Table 4
Figure imgf000019_0001
Figure imgf000020_0001
Figure imgf000021_0001
wherein each R is independently selected from -H, -(CH2)i-3CC>2H, alkyl, alkoxy, alkenyl, aryl, heteroaryl, arylalkyl, and heteroarylalkyl.
[0025] In another example of the compound of structural formula IV, Z is -C(R15)= or - C(H)=; L4 is -0-; and p is at least one, such are referred to as compounds of formula IVa.
[0026] In example of the compounds of structural formula IV or IVa, Ar is selected from the group consisting of phenyl, biphenyl, napthyi, tetrahydronaphthalene, chromen-2- one, dibenzofuran, pyryl, furyl, pyridyl, 1 ,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
[0027] In another example of the compound of structural formula IV or IVa,, Ar is phenyl, optionally substituted, with at least one halogen.
[0028] In another example of the compound of structural formula IV or IVa, and any of the preceding embodiments thereof, p is at least two.
[0029] In another example of the compound of structural formula IV or IVa, and any of the preceding embodiments thereof, -L'-R1 is -C(=0)OR14 or -(CH2)2OR14.
[0030] In another example the compound of structural formula IV has the structure:
Figure imgf000021_0002
[0031] In another example of the compound of structural formula IV, Z is -N=; and L4 is -0-, such are referred to as compounds of formula IVb.
[0032] In an example of the compound of structural formula IVb, Ar is selected from the group consisting of phenyl, biphenyl, napthyl, tetrahydronaphthalene, chromen-2-one, dibenzofuran, pyryl, furyl, pyridyl, 1 ,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
[0033] In another example of the compound of structural formula IVb, Ar is optionally substituted tetrahydro-naphthalene.
[0034] In another example of the compound of structural formula IVb and any of the preceding embodiments thereof, -L'-R1 is -C(=0)OR14 or -(CH2)2-30R14.
[0035] In another example of the compound of structural formula IVb and any of the preceding embodiments thereof, p is zero.
[0036] In another example the com ound of structural formula IVb has the structure:
Figure imgf000022_0001
[0037] In another example of the compound of the compound of structural formula IV, Z is -N=; and L4 is nothing such are referred to as compounds of formula IVc.
[0038] In an example of the compound of structural formula IVc, Ar is selected from the group consisting of phenyl, biphenyl, napthyl, tetrahydronaphthalene, chromen-2-one, dibenzofuran, pyryl, furyl, pyridyl, 1 ,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
[0039] In another example of the compound of structural formula IVc and any of the preceding embodiments thereof, p is zero. [0040] In another example of the compound of structural formula IVc and any of the preceding embodiments thereof, Ar is optionally substituted phenyl.
[0041] In another example of the compound of structural formula IVc and any of the preceding embodiments thereof, -L'-R1 is -C(=0)OR14 or -(CH2)2-30R14.
[0042] In another example, the compound of structural formula IVc has the structure:
Figure imgf000023_0001
[0043] In another example, the compound of structural formula IV is of formula V,
V
Figure imgf000023_0002
[0044] In another example of the compound of structural formula V, Ar is selected from the group consisting of phenyl, biphenyl, napthyl, tetrahydronaphthalene, chromen-2-one, dibenzofuran, pyryl, furyl, pyridyl, 1 ,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
[0045] In another example of the compound of structural formula V and any of the preceding embodiments thereof, Ar is phenyl, optionally substituted, with at least one halogen.
[0046] In another example of the compound of structural formula V and any of the preceding embodiments thereof, Ar is selected from,
Figure imgf000024_0001
[0047] In another example, the compound of structural formula V has the absolute stereochemistry is according to formula VI,
VI
Figure imgf000024_0002
[0048] In another example of the compound of structural formula VI, -L'-R1
is -C(=0)OR14 or -(CH2)2-30R14.
[0049] In another example the compound of structural formula VI has the structure:
Figure imgf000024_0003
[0050] In a third aspect, the invention comprises a method for treating atherosclerosis comprising administering to a patient in need of such treatment, a therapeutically effective amount of a pharmaceutical composition comprising a compound as described in any.of the embodiments described in the preceding paragraphs of the first or second aspects of the invention, optionally with a pharmaceutically acceptable carrier.
[0051] In a fourth aspect, the invention comprises method for treating, preventing, or reducing the risk of carotid, aortic, or other arterial plaque development and rupture, atherosclerosis, thromboembolism, stroke, acute coronary syndromes, and/or myocardial infarction in a patient in need of such treatment, comprising administering to the patient a therapeutically effective amount of a compound described in any of the embodiments of the first and second aspects of the invention, optionally with a pharmaceutically acceptable carrier. [0052] In a fifth aspect, the invention comprises a method of inhibiting atherosclerotic lesion formation and growth as well as reducing aortic intimal lipid accumulation in a patient comprising administering to the patient a therapeutically effective amount of a compound described in any of the embodiments of the first and second aspects of the invention, optionally with a pharmaceutically acceptable carrier.
[0053] "Patient" as used herein refers to a mammal, including a human.
[0054] The invention also comprises all the foregoing methods in which the compound is a pharmaceutically acceptable salt. In a particular embodiment of the methods disclosed herein is the use of the Mg2+ salt of any of the genera and specific compounds disclosed herein. In another particular embodiment, the compound is the Mg2+ salt of the compound
Figure imgf000025_0001
DEFINITIONS
[0055] The following paragraphs provide definitions of the various chemical moieties that make up the compounds of the invention and are intended to apply uniformly throughout the specification and claims unless expressly stated otherwise.
[0056] The term alkyl refers inclusively to a univalent Ci to C20 (unless explicitly stated otherwise) saturated straight, branched, cyclic, and combinations thereof alkane moiety and specifically includes methyl, ethyl, propyl, isopropyl, butyl, isobutyl, t-butyl, pentyl, cyclopentyl, isopentyl, neopentyl, hexyl, isohexyl, cyclohexyl, 3-methylpentyl, 2,2- dimethylbutyl, and 2,3-dimethylbutyl. In certain instances, specific cycloalkyls are defined (e.g. C3-C8 cycloalkyl) to differentiate them from generically described alkyls (that, again, are intended to construe inclusion of cycloalkyls). Thus "alkyl" includes, e.g., C3-C8 cycloalkyl. The term "alkyl" also includes, e.g. , C3-C8 cycloalkyl CI-CG alkyl, which is a C1-C6 alkyl having a C3-C8 cycloalkyl terminus. AlkyPs can be optionally substituted with any appropriate group, including but not limited to one or more moieties selected from halo, hydroxyl, amino, arylalkyl, heteroarylalkyl, alkylamino, arylamino, alkoxy, aryloxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, or phosphonate, either unprotected, or protected as necessary, as known to those skilled in the art or as taught, for example, in Greene, et al, "Protective Groups in Organic Synthesis," John Wiley and Sons, Second Edition, 1991.
[0057] The term alkoxy refers to the group -0-(substituted alkyl), the substitution on the alkyl group generally containing more than only carbon (as defined by alkoxy). One · exemplary substituted alkoxy group is "polyalkoxy" or -O- (optionally substituted alkylene)-(optionally substituted alkoxy), and includes groups such as -OCH2CH2OCH3, and glycol ethers such as polyethyleneglycol and -0(CH2CH20)XCH3, where x is an integer of between about 2 and about 20, in another example, between about 2 and about 10, and in a further example between about 2 and about 5. Another exemplary substituted alkoxy group is hydroxyalkoxy or -0CH2(CH2)y0H, where y is for example an integer of between about 1 and about 10, in another example y is an integer of between about 1 and about 4.
[0058] The term alkenyl refers to a univalent C2-C6 straight, branched, or in the case of C5.8, cyclic hydrocarbon with at least one double bond.
[0059] The term aryl refers to a univalent phenyl, biphenyl, napthyl, and the like. The aryl group can be optionally substituted with any suitable group, including but not limited to one or more moieties selected from halo, hydroxyl, amino, alkylamino, arylamino, alkoxy, aryloxy, nitro, cyano, sulfonic acid, sulfate, phosphonic acid, phosphate, or phosphonate, either unprotected, or protected as necessary, as known to those skilled in the art, for example, as taught in Greene, et al., "Protective Groups in Organic Synthesis," John Wiley and Sons, Second Edition, 1991). As well, substitution on an aryl can include fused rings such as in tetrahydronaphthalene, chromen-2-one, dibenzofuran, and the like. In such cases, e.g. tetrahydronaphthalene, the aryl portion of the tetrahydronaphthalene is attached to the portion of a molecule described as having an aryl group.
[0060] The term heteroatom means O, S, P, or N.
[0061] The term heterocycle refers to a cyclic alkyl, alkenyl, or aryl moiety as defined above wherein one or more ring carbon atoms is replaced with a heteroatom.
[0062] The term heteroaryl specifically refers to an aryl that includes at least one of sulfur, oxygen, and nitrogen in the aromatic ring. Non-limiting examples are pyrrolyl, furyl, pyridyl, 1,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl. [0063] The term halo refers to chloro, fluoro, iodo, or bromo.
[0064] As used herein, the term pharmaceutically acceptable salts or complexes refers to salts or complexes that retain the desired biological activity of the above-identified compounds and exhibit minimal or no undesired toxicological effects. Examples of such salts include, but are not limited to acid addition salts formed with inorganic acids (for example, hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, nitric acid, and the like), and salts formed with organic acids such as acetic acid, oxalic acid, tartaric acid, succinic acid, malic acid, ascorbic acid, benzoic acid, tannic acid, pamoic acid, alginic acid, polyglutamic acid, naphthalenesulfonic acid, naphthalenedisulfonic acid, and polygalacturonic acid. The compounds can also be administered as pharmaceutically acceptable quaternary salts known by those skilled in the art, which specifically include the quaternary ammonium salt of the formula -NR + Z-, wherein R is hydrogen, alkyl, or benzyl, and Z is a counterion, including chloride, bromide, iodide, -O-alkyl,
toluenesulfonate, methylsulfonate, sulfonate, phosphate, or carboxylate (such as benzoate, succinate, acetate, glycolate, maleate, malate, citrate, tartrate, ascorbate, benzoate, cinnamoate, mandeloate, benzyloate, and diphenyl-acetate).
[0065] The term pharmaceutically active derivative refers to any compound that upon administration to the recipient, is capable of providing directly or indirectly, the compounds disclosed herein.
[0066] In some examples, as will be appreciated by those skilled in the art, two adjacent carbon containing groups on an aromatic system may be fused together to form a ring structure. The fused ring structure may contain heteroatoms and may be substituted with one or more substitution groups "R". It should additionally be noted that for cycloalkyl (i.e. saturated ring structures), each positional carbon may contain two substitution groups, e.g. R and R'.
[0067] Some of the compounds used in the present invention may have imino, amino, oxo or hydroxy substituents off aromatic heterocyclic ring systems. For purposes of this disclosure, it is understood that such imino, amino, oxo or hydroxy substituents may exist in their corresponding tautomeric form, i.e., amino, imino, hydroxy or oxo, respectively.
[0068] Compounds used in the present invention are generally named using ACD Name (available from Advanced Chemistry Development, Inc. of Toronto, Canada). This software derives names from chemical structures according to systematic application of the nomenclature rules agreed upon by the International Union of Pure and Applied Chemistry (IUPAC), International Union of Biochemistry and Molecular Biology (IUBMB), and the Chemical Abstracts Service (CAS).
[0069] The compounds used in the present invention, or their pharmaceutically acceptable salts, may have asymmetric carbon atoms, oxidized sulfur atoms or quaternized nitrogen atoms in their structure.
[0070] The compounds used in the present invention and their pharmaceutically acceptable salts may exist as single stereoisomers, racemates, and as mixtures of enantiomers and diastereomers. The compounds may also exist as geometric isomers. All such single stereoisomers, racemates and mixtures thereof, and geometric isomers are intended to be within the scope of this invention.
[0071] Methods for the preparation and/or separation and isolation of single stereoisomers from racemic mixtures or non-racemic mixtures of stereoisomers are well known in the art. For example, optically active (R)- and (S)- isomers may be prepared using chiral synthons or chiral reagents, or resolved using conventional techniques. When desired, the R- and S-isomers may be resolved by methods known to one skilled in the art, for example by: formation of diastereoisomeric salts or complexes which may be separated, for example, by crystallization; via formation of diastereoisomeric derivatives which may be separated, for example, by crystallization, gas-liquid or liquid chromatography; selective reaction of one enantiomer with an enantiomer-specific reagent, for example enzymatic oxidation or reduction, followed by separation of the modified and unmodified enantiomers; or gas-liquid or liquid chromatography in a chiral environment, for example on a chiral support, such as silica with a bound chiral ligand or in the presence of a chiral solvent. It will be appreciated that where a desired enantiomer is converted into another chemical entity by one of the separation procedures described above, a further step may be required to liberate the desired enantiomeric form. Alternatively, specific enantiomer may be synthesized by asymmetric synthesis using optically active reagents, substrates, catalysts or solvents, or by converting on enantiomer to the other by asymmetric transformation. For a mixture of enantiomers, enriched in a particular enantiomer, the major component enantiomer may be further enriched (with concomitant loss in yield) by recrystallization.
[0072] "Optional" or "optionally" means that the subsequently described event or circumstance may or may not occur, and that the description includes instances where said event or circumstance occurs and instances in which it does not. It will be understood by one skilled in the art with respect to any group containing one or more substituents that such groups are not intended to introduce any substitution or substitution patterns that are sterically impractical and/or synthetically non-feasible. "Optionally substituted" refers to all subsequent modifiers in a term, for example in the term "optionally substituted C\.
galkylaryl," optional substitution may occur on both the "Ci-salkyl" portion and the "aryl" portion of the molecule.
[0073] "Substituted" alkyl, aryl, and heterocyclyl, for example, refer respectively to alkyl, aryl, and heterocyclyl, wherein one or more (for example up to about 5, in another example, up to about 3) hydrogen atoms are replaced by a substituent independently · selected from, but not limited to: halogen, cyano, nitro, oxo, alkyl, haloalkyl (e.g., fluoroalkyl, trifluoromethyl), alkylenedioxy (e.g. methylenedioxy), cycloalkyl, cycloalkylalkyl, heterocyclylalkyl, heterocyclyl, aryl (e.g., phenyl), arylaikyl (e.g., benzyl), heteroaryl, heteroarylalkyl, -OR0 (e.g., aryloxy or arylalkyloxy, such as, phenoxy or benzyloxy), -SR°, -N(R°)2, -C(0)R°, -C(0)OR°, -C(0)N(R°)2, -C(=NR°)N(R°)2, - OC(0)R°, -OC(0)OR°, -OC(0)N(R°)2 (e.g. benzyloxycarbonylamino (CBZ-amino), - N(R°)C(0)R°, -N(R°)C(0)OR°, -N(R°)C(0)N(R°)2, -S(0)R°, -S(0)2R°, -OS(0)2R°, or -N(R°)S(0)2R°, wherein each R° is independently hydrogen, Ci.6alkyl, haloalkyl, cycloalkyl, heterocyclyl, aryl, heteroaryl, cycloalkylalkyl, heterocyclylalkyl, arylaikyl, or heteroarylalkyl. In certain examples, each R° is independently hydrogen or Ci-6alkyl, or arylaikyl (e.g., benzyl). In certain other examples, each R° is independently hydrogen or Ci.6alkyl.
[0074] "Prodrug" refers to compounds that are transformed (typically rapidly) in vivo to yield the parent compound of the above formulae, for example, by hydrolysis in blood. Common examples include, but are not limited to, ester and amide forms of a compound having an active form bearing a carboxylic acid moiety. Examples of pharmaceutically acceptable esters of the compounds of this invention include, but are not limited to, alkyl esters (for example with between about 1 and about 6 carbons) wherein the alkyl group is a straight or branched chain. Acceptable esters also include cycloalkyl esters and arylaikyl esters such as, but not limited to benzyl. Examples of pharmaceutically acceptable amides of the compounds of this invention include, but are not limited to, primary amides, and secondary and tertiary alkyl amides (for example with between about 1 and about 6 carbons). Amides and esters of the compounds of the present invention may be prepared according to conventional methods. A thorough discussion of prodrugs is provided in T. Higuchi and V. Stella, "Pro-drugs as Novel Delivery Systems," Vol 14 of the A.C.S.
Symposium Series, and in Bioreversible Carriers in Drug Design, ed. Edward B. Roche, American Pharmaceutical Association and Pergamon Press, 1987, both of which are incorporated herein by reference.
[0075] In addition, the compounds can exist in unsolvated as well as solvated forms with pharmaceutically acceptable solvents such as water, ethanol, and the like. In general, the solvated forms are considered equivalent to the unsolvated forms for the purposes of the present invention.
[0076] As used herein, the term "individual" or "patient," used interchangeably, refers to any animal, including mammals, preferably mice, rats, other rodents, rabbits, dogs, cats, swine, cattle, sheep, horses, or primates, and most preferably humans.
[0077] As used herein, the phrase "therapeutically effective amount" refers to the amount of active compound or pharmaceutical agent that elicits the biological or medicinal response that is being sought in a tissue, system, animal, individual or human by a researcher, veterinarian, medical doctor or other clinician.
[0078] In certain embodiments, a therapeutically effective amount can be an amount suitable for
[0079] (1) preventing the disease; for example, preventing a disease, condition or disorder in an individual who may be predisposed to the disease, condition or disorder but does not yet experience or display the pathology or symptomatology of the disease;
[0080] (2) inhibiting the disease; for example, inhibiting a disease, condition or disorder in an individual who is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder; or
[0081] (3) ameliorating the disease; for example, ameliorating a disease, condition or disorder in an individual who is experiencing or displaying the pathology or
symptomatology of the disease, condition or disorder (i.e., reversing the pathology and/or symptomatology) such as decreasing the severity of disease.
[0082] As used here, the terms "treatment" and "treating" means (i) ameliorating the referenced disease state, for example, ameliorating a disease, condition or disorder in an individual who is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder (i.e., reversing or improving the pathology and/or symptomatology) such as decreasing the severity of disease; or (ii) eliciting the referenced biological effect.
[0083] Examples of diseases and disorders in which may be treated by use of agents that inhibit human metalloproteinase (MMP), such as MMP-9 and/or MMP-2 while optionally sparing MMP-1 And include, but are not limited to, atherosclerosis. Specifically the prevention of atherosclerotic plaque development and rupture (e.g., carotid arterial plaque development and rupture) by MMP inhibition will reduce the adverse consequences of plaque development and rupture including thromboembolism, stroke, myocardial infarction, and acute coronary syndromes. Acute coronary syndrome (ACS) s usually one of three diseases involving the coronary arteries: ST elevation myocardial infarction, non ST elevation myocardial infarction, or unstable angina.
[0084] The therapeutic dosage of the compounds can vary according to, for example, the particular use for which the treatment is made, the manner of administration of the compound, the health and condition of the patient, and the judgment of the prescribing physician. The proportion or concentration of a compound described herein in a pharmaceutical composition can vary depending upon a number of factors including dosage, chemical characteristics (e.g., hydrophobicity), and the route of administration. For example, the compounds described herein can be provided in an aqueous physiological buffer solution containing about 0.1 to about 10% w/v of the compound for parenteral administration. Some typical dose ranges are from about 1 μg/kg to about 1 g/kg of body weight per day. In some embodiments, the dose range is from about 0.01 mg/kg to about 100 mg/kg of body weight per day. The dosage is likely to depend on such variables as the type and extent of progression of the disease or disorder, the overall health status of the particular patient, the relative biological efficacy of the compound selected, formulation of the excipient, and its route of administration. Effective doses can be extrapolated from dose-response curves derived from in vitro or animal model test systems.
Examples
[0085] The compounds useful in the methods of the invention can be prepared as described in U.S. Patent No. 7,629,341 , which is hereby incorporated by reference in its entirety. The compounds herein can be tested for plaque stabilization and/or disruption according to models known to those skilled in the art; for example, the apoE ' murine atherosclerotic model described in Gough et al., J. Clin. Invest. 2006, 116, 59.
Example 1: Enzyme Assays
[0086] Table 5 below shows structure activity relationship data for selected compounds for use in the present invention when tested in vitro with various metalloproteases.
Inhibition is indicated as IC50 with the following key: A = IC50 less than 50 nM, B = IC50 greater than 50 nM, but less than 1000 nM, C = IC50 greater than 1000 nM, but less than 20,000 nM, and D = IC50 greater than 20,000 nM. Blank cells indicate lack of data only. The abbreviations in Table 5 are defined as follows: MMP-1 stands for Fibroblast collagenase; MMP-2 stands for 72 kDa gelatinase (gelatinase A); and MMP-9 stands for 92 kDa gelatinase (gelatinase B).
Table 5
Figure imgf000032_0001
Figure imgf000033_0001
Figure imgf000034_0001
Figure imgf000035_0001
Figure imgf000036_0001
Figure imgf000037_0001
Figure imgf000038_0001
Figure imgf000039_0001
Figure imgf000040_0001
Figure imgf000041_0001
8
-40-
Figure imgf000042_0001
Figure imgf000043_0001
Figure imgf000044_0001
Figure imgf000045_0001
Figure imgf000046_0001
Figure imgf000047_0001
Figure imgf000048_0001
Example 2: Compound 15 Significantly Reduces Atherosclerosis in the SR-uPA mouse model of atherosclerosis
[0087] Female Apoe~'~ mice were studied and were transgenic for a murine uPA gene. SR-uPA+ 0 mice were bred with nontransgenic Apoe~'~ mice to yield SR-uPA+ 0 and non- transgenic SR-uPA0 0 littermate controls. The SR-uPA mice are known to have accelerated atherosclerosis, coronary artery occlusions, aortic root dilation, and sudden premature death that are driven by increased uPA enzymatic activity.1'5 They also have elevated MMP activity in their aortae,4 which may play a role in accelerating atherosclerosis and in promoting aortic root dilation and plaque rupture. The mice were fed a high-fat diet (HFD: 21% fat, 0.15% cholesterol by weight) beginning at 5 - 6 wk of age and continuing for 10 wk. Mice received one of three doses of compound 15 (125, 250, or 500 mg/kg or the vehicle alone by gavage daily. After 10 wk on HFD the Aortas were removed and examined.
[0088] Total cholesterol was measured in blood obtained from the retro-orbital plexus (Spectrum cholesterol assay, Abbott). Complete blood counts were perfonned by an outside laboratory (Phoenix Central Laboratory). Total MMP activity in aortic CM was measured with the Omni MMP activity assay.4
[0089] Data are mean ± SD or median (25% - 75% range). In experiments testing multiple doses of compound 15, we used ANOVA followed by the Holm-Sidak post-hoc correction for multiple comparisons to test whether each of the treatment groups differed significantly from the control group. When conditions of normality and equal variance were not met we used ruskal-Wallis ANOVA. Categorical data (presence or absence of aortic pathology) were analyzed by Chi Square or Fisher exact test. All tests were carried out with the SigmaStat program (Systat Software).
[0090] The experiments described above demonstrate that that systemic inhibition of MMP activity with the limited-spectrum MMP inhibitor compound 15 reduces
atherosclerosis in SR-uPA+ 0 mouse model of atherosclerosis (mice with a urokinase transgene driven by the scavenger receptor A promoter). Treatment with all 3 doses of compound 15 reduced aortic root intimal lesion area (22 - 29%; P < 0.05 only for the lowest dose; Figure 1 A). All 3 doses of compound 15 also yielded non-significant trends towards reduced aortic root circumference/dilatation (5 - 10%; P > 0.05 for all 3 ; Figure IB). Moreover, all 3 doses of compound 15 significantly reduced total aortic root lesion ORO (oil red 0)-positive area (a measure of atherosclerosis extent) (36 - 42%; P < 0.05 for all doses compared to vehicle; Figure 1C) but did not significantly affect the percentage of lesion ORO-positivity (Table 6). All 3 compound 15 doses also nominally reduced total aortic root lesion macrophage-positive area, with the highest dose having a significant effect (33% reduction; P < 0.05; Figure ID). The percentage of macrophage positivity in aortic root lesions was not significantly affected by any of the compound 15 doses (Table 6). Of note none of the 3 doses of compound 15 significantly affected either total peripheral blood monocyte counts, percentages of circulating monocytes, or total plasma cholesterol (Table 6) showing that the changes in lesion size and content did not merely reflect systemic changes in monocyte or cholesterol levels. Total MMP activity in aortic CM was modestly decreased (4 -13%) in all 3 groups of compound 15-treated versus vehicle-fed mice but these differences were not statistically significant (Table 6).
[0091] Thus these findings demonstrate that compound 15 reduces the volume of atherosclerotic lesions and intimal lipid accumulation in aortas of susceptible mice.
Table 6 Comparison of mice treated with compound and with vehicle-treated transgenic (SR-uPA+ 0) mice. Values are mean ± SD except for % Sudanophilic lesions of thoracic aortic lumen surface area, which are median and (25%-75%) range, n indicates mice in each group.
Figure imgf000050_0001
References
[0092] 1. Cozen AE, Moriwaki H, Kremen M, DeYoung MB, Dichek HL, Slezicki KI, Young SG, Veniant M, Dichek DA. Macrophage-targeted overexpression of urokinase causes accelerated atherosclerosis, coronary artery occlusions, and premature death.
Circulation. 2004;109:2129-2135.
[0093] 2. Farris SD, Hu JH, rishnan R, Emery I, Chu T, Du L, Kremen M, Dichek HL, Gold E, Ramsey SA, Dichek DA. Mechanisms of Urokinase Plasminogen Activator (uPA)-mediated Atherosclerosis: Role of the uPA Receptor and S100A8/A9 proteins. J Biol Chem. 201 1 ;286:22665-22677.
[0094] 3. Williams JM, Zhang J, North P, Lacy S, Yakes M, Dahly- Vernon A, Roman RJ. Evaluation of metalloprotease inhibitors on hypertension and diabetic nephropathy. Am J Physiol Renal Physiol; 300:F983-998. [0095] 4. Hu JH, Du L, Chu T, Otsuka G, Dronadula N, Jaffe M, Gill SE, Parks WC, Dichek DA. Overexpression of urokinase by plaque macrophages causes histologic features of plaque rupture and increases vascular MMP activity in aged apo E-Null mice.
Circulation. 2010;121 :1637-1644.
[0096] 5. Kremen M, rishnan R, Emery 1, Hu JH, Slezicki K, Wu A, Qian K, Du L, Plawman A, Stempien-Otero A, Dichek DA. Plasminogen mediates the atherogenic effects of macrophage-expressed urokinase and accelerates atherosclerosis in apoE-knockout mice. Proc Natl Acad Sci U.S.A. 2008;105:17109-17114.

Claims

We claim:
1. A method for treating, preventing, or reducing the risk of carotid, aortic, or other arterial plaque development and rupture, atherosclerosis, thromboembolism, stroke, acute coronary syndromes, and/or myocardial infarction in a patient in need of such treatment, comprising administering to the patient a therapeutically effective amount of a compound of structural formula I:
Figure imgf000052_0001
I
or pharmaceutically acceptable salts, esters, amides, and prodrugs thereof wherein
L1 is -C(O)-, -S(0)2-, or -(CH2)n-;
R1 is -H, -OR11, -(CH2)nR11, -C(0)Ru, or -NR12R13;
R11, R12, and R13 independently are
a) R50;
b) saturated or mono- or poly- unsaturated Cs-Cn-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one or two R50 substituents;
c) Ci-C6-alkyl, C2-C6-alkenyl, C2-C6-alkynyl, or -C(0)H, each of which is optionally substituted with one, two or three substituents independently selected from R50 and saturated or mono- or polyunsaturated C5-Ci4-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two or three R50 substituents;
or R12 and R13 together with the N to which they are covalently bound, a C5-C6 heterocycle optionally containing a second annular heteroatom and optionally substituted with one or two R50 substituents;
R2 is -R2,-L2-R22; R is saturated or mono- or poly- unsaturated Cs-Cw-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three R50 substituents;
L2 is -0-, -C(O)-, -CH2-, -NH-, -S(02)- or a direct bond;
R22 is saturated or mono- or poly- unsaturated Cs-Cu-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three R50 substituents; and
R50 is R51-lA(CH2)n-;
L3 is -0-, -NH-, -S(0)o-2-, -C(O)-, -C(0)0-, -C(0)NH-, -OC(O)-, -NHC(O)-, -C6H4-, or a direct bond;
R51 is -H, Ci-Ce-alkyl, C2-C6-alkenyl, C2-C6-alkynyl, halo, -CF3, -OCF3, -OH, -NH2, mono-Ci-C6alkyl amino, di-Ci-C6alkyl amino, -SH, -C02H, -CN, -N02, -S03H, or a saturated or mono- or poly- unsaturated Cs-Cu-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three substituents;
wherein n is 0, 1, 2, or 3;
provided that an O or S is not singly bonded to another O or S in a chain of atoms.
2. The method according to claim 1, wherein L1 is -C(O)- or -S(0)2-.
3. The method according to claim 2, wherein L1 is -C(O)- and R1 is -OR11 or -(CH2- )nR", -OC,-C6alkyI-mono-Ci-C6alkyl amino, -OCrC6alkyl-di-Ci-C6alkyl amino, -OCi-C6alkyl-N-heterocyclyl, -Ci galley l-mono-Ci-C6alkyl amino, -Ci- Cealkyl-di-Ci-Cealkyl amino, or -Ci-C6alkyl-N-heterocyclyl.
4. The method according to claim 2, wherein, R1 is Ci-C6-alkoxy-Ci-C6-alkoxy.
5. The method according to claim 2, wherein R1 is methoxyethoxy.
6. The method according to claim 3, wherein L1 is -S(0)2-, and R1
is -NR12R13, -(CH2-)nRH, -Ci-Cealkyl-mono-d-Cealkyl amino, -Ci-C6alkyl-di-Ci- Cealkyl amino, or -Ci-C6alkyl-N-heterocyclyl.
7. The method according to claim 3, wherein L2 is -0-. The method according to claim 7, wherein, R2 is phenoxyphenyl wherein each phenyl is optionally substituted with one or two R substituents.
9. The method according to claim 8, wherein the saturated or mono- or polyunsaturated C5-Ci4-mono- or fused poly- cyclic hydrocarbyl containing one or two annular heteroatoms per ring is selected from the group consisting of morpholinyl, piperazinyl, homopiperazinyl, pyrrolidinyl, piperidinyl, homopiperidinyl, furyl, thienyl, pyranyl, isobenzofuranyl, chromenyl, pyrrolyl, imidazolyl, isoxazolyl, pyridyl, pyrazinyl, pyrimidinyl, oxadiazolyl, indolyl, quinolinyl, carbazolyl, acrydinyl, and furazanyl, optionally substituted with one or two R50 substituents.
10. The method according to claim 8, wherein R12 and R13, together with the N to which they are covalently bound, form a heterocycle selected from the group consisting of morpholinyl, piperazinyl, homopiperazinyl, pyrrolidinyl, piperidinyl,
homopiperidinyl, pyrrolyl, imidazolyl, isoxazolyl, pyridyl, pyrazinyl, pyrimidinyl, oxadiazolyl, indolyl, quinolinyl, carbazolyl, acrydinyl, and furazanyl, optionally substituted with one or two R50 substituents.
1 1. The method according to claim 1 , wherein the compound comprises the absolute stereochemistry of structural formula II:
Figure imgf000054_0001
The method according to claim 1 , wherein the compound comprises the absolute stereochemistry of structural formula III:
Figure imgf000054_0002
13. The method according to claim 1 , wherein -L -R is selected from:
Figure imgf000055_0001
Figure imgf000056_0001
wherein each R14 is independently selected from -H, -((¾)] -3CO2H, alkyl, alkoxy, alkenyl, aryl, heteroaryl, arylalkyl, and heteroarylalkyl; and
R2 is selected from:
Figure imgf000056_0002
Figure imgf000057_0001
Figure imgf000057_0002
The method according to claim 1, wherein the compound is selected from:
Figure imgf000057_0003
Figure imgf000058_0001
Figure imgf000059_0001
Figure imgf000060_0001
Figure imgf000061_0001
Figure imgf000062_0001
Figure imgf000063_0001
Figure imgf000064_0001
Figure imgf000065_0001
15. A method for treating, preventing, or reducing the risk of carotid, aortic, or other arterial plaque development and rupture, atherosclerosis, acute coronary syndromes, thromboembolism, stroke, and/or myocardial infarction in a patient in need of such treatment, comprising administering to the patient a therapeutically effective amount of a compound according to formula IV,
IV
Figure imgf000065_0002
and pharmaceutically acceptable salts, esters, amides, and prodrugs thereof wherein,
Z is -C(R,5)=, -C(H)=, or -N=;
Ar is aryl or heteroaryl, each optionally substituted;
R15 is fluoro;
p is 0, 1, 2, or 3;
L1 is -C(O)-, -S(0) , or -(CH2)n-;
L4 is nothing or -0-;
R1 is -H, -OR1 1, -(CH2)nRU, -C(0)RH, or -NR12R13;
R1 1, R12, and R13 independently are
a) R50;
b) saturated or mono- or poly- unsaturated Cs-Cn-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one or two R substituents;
c) Ci-C6-alkyl, C2-C6-alkenyl, C2-C6-alkynyl, or -C(0)H, each of which is optionally substituted with one, two or three substituents independently selected from R50 and saturated or mono- or polyunsaturated C5-Ci -mono- or fused poly- cyclic hydrocarbyl, ' optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two or three R50 substituents;
or R12 and R13 together with the N to which they are covalently bound, a C5-C6 heterocycle optionally containing a second annular heteroatom and optionally substituted with one or two R50 substituents; and
R50 is R51-L3-(CH2)n-;
L3 is -0-, -NH-, -S(0)o-2-, -C(O)-, -C(0)0-, -C(0)NH-, -OC(O)-, -NHC(O)-, -C6H4-, or a direct bond;
R51 is -H, Ci-Ce-alkyl, C2-C6-alkenyl, C2-C6-alkynyl, halo, -CF3, -OCF3, -OH, -NH2, mono-Ci-C6alkyl amino, di-Ci-C6alkyl amino, -SH, -C02H, -CN, -N02, -SO3H, or a saturated or mono- or poly- unsaturated Cs-Cn-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three substituents;
wherein n is 0, 1, 2, or 3;
provided that an O or S is not singly bonded to another O or S in a chain of atoms.
The method according to claim 15, wherein -L'-R1 is selected from:
Figure imgf000066_0001
Figure imgf000067_0001
Figure imgf000068_0001
wherein each R is independently selected from -H, -(CH2)i-3C02H, alkyl, alkoxy, alkenyl, aryl, heteroaryl, arylalkyl, and heteroarylalkyl.
17. The method according to claim 16, wherein Z is -C(R15)= or -C(H)=; L4 is -0-; and p is at least one.
18. The method according to claim 17, wherein Ar is selected from the group consisting of phenyl, biphenyl, napthyl, tetrahydronaphthalene, chromen-2-one, dibenzofuran, pyryl, furyl, pyridyl, 1 ,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
19. The method according to claim 18, wherein Ar is phenyl, optionally substituted, with at least one halogen.
20. The method according to claim 19, wherein p is at least two.
21. The method according to claim 20, wherein -L'-R1 is -C(=0)OR or -(CH2)20RM.
22. The method according to claim 21 , wherein the compound is
Figure imgf000068_0002
23. The method according to claim 16, wherein Z is -N=; and L4 is -0-.
24. The method according to claim 23, wherein Ar is selected from the group consisting of phenyl, biphenyl, napthyl, tetrahydronaphthalene, chromen-2-one, dibenzofuran, pyryl, furyl, pyridyl, 1 ,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
25. The method according to claim 24, wherein Ar is optionally substituted tetrahydro- naphthalene.
26. The method according to claim 25, wherein -L'-R1 is -C(=0)OR14 or -(CH2)2-30R14.
27. The method according to claim 26, wherein p is zero.
28. The method according to claim 27, wherein the compound is
Figure imgf000069_0001
29. The method according to claim 16, wherein Z is -N=; and L4 is nothing.
30. The method according to claim 29, wherein Ar is selected from the group consisting of phenyl, biphenyl, napthyl, tetrahydronaphthalene, chromen-2-one, dibenzofuran, pyryl, furyl, pyridyl, 1 ,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
3 1 . The method according to claim 30, wherein p is zero.
32. The method according to claim 3 1 , wherein Ar is optionally substituted phenyl.
33. The method according to claim 32, wherein -L'-R1 is -C(=0)OR14 or -(CH2)2-30R14.
34. The method according to claim 33, wherein the compound is
Figure imgf000070_0001
The method according to claim 16, wherein the compound is according to formula
V
Figure imgf000070_0002
36. The method according to claim 35, wherein Ar is selected from the group consisting of phenyl, biphenyl, napthyl, tetrahydronaphthalene, chromen-2-one, dibenzofuran, pyryl, furyl, pyridyl, 1,2,4-thiadiazolyl, pyrimidyl, thienyl, isothiazolyl, imidazolyl, tetrazolyl, pyrazinyl, pyrimidyl, quinolyl, isoquinolyl, benzothienyl, isobenzofuryl, pyrazolyl, indolyl, purinyl, carbazolyl, benzimidazolyl, and isoxazolyl, each optionally substituted.
37. The method according to claim 36, wherein Ar is phenyl, optionally substituted, with at least one halogen.
The method according to claim 36, wherein Ar is selected from,
Figure imgf000070_0003
39. The method according to claim 37, wherein the absolute stereochemistry is
according to formula VI,
Figure imgf000071_0001
40. The method according to claim 39, wherein -L'-R1 is -C(=0)OR14 or -(CH2)2.3OR
41. The method according to claim 40, wherein the compound is
Figure imgf000071_0002
A method of inhibiting atherosclerotic lesion formation and growth or reducing aortic intimal lipid accumulation in a patient in need of such treatment, comprising administering to the patient a therapeutically effective amount of a compound'of structural formula I:
Figure imgf000071_0003
I
and pharmaceutically acceptable salts, esters, amides, and prodrugs thereof wherein
L1 is -C(0)-, -S(0)2-, or -(CH2)n-;
R1 is -H, -OR1 1, -(CH2)nRu, -C(0)Rn, or -NR12R13;
R1 1, R12, and R13 independently are
a) R50;
b) saturated or mono- or poly- unsaturated C5-Ci4-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one or two R50 substituents: c) Ci-C6-alkyl, C2-C6-alkenyl, C2-C6-alkynyl, or -C(0)H, each of which is optionally substituted with one, two or three substituents independently selected from R50 and saturated or mono- or polyunsaturated C5-Ci4-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two or three R50 substituents;
or R12 and R13 together with the N to which they are covalently bound, a C5-C6 heterocycle optionally containing a second annular heteroatom and optionally substituted with one or two R50 substituents;
R2 is -R21-L2-R22;
R21 is saturated or mono- or poly- unsaturated Cs-Cu-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three R50 substituents;
L2 is -0-, -C(O)-, -CH2-, -NH-, -S(02)- or a direct bond;
R22 is saturated or mono- or poly- unsaturated Cs-C -mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three R50 substituents; and
R50 is R51-L3-(CH2)„-;
L3 is -0-, -NH-, -S(0)o-2-, -C(O)-, -C(0)0-, -C(0)NH-, -OC(O)-, -NHC(O)-, -C6H4-, or a direct bond;
R51 is -H, Ci-C6-alkyl, C2-C6-alkenyl, C2-C6-alkynyl, halo, -CF3, -OCF3, -OH, -NH2, mono-Ci-Cealkyl amino, di-Ci-C6alkyl amino, -SH, -CO2H, -CN, -NO2, -SO3H, or a saturated or mono- or poly- unsaturated Cs-Cu-mono- or fused poly- cyclic hydrocarbyl, optionally containing one or two annular heteroatoms per ring and optionally substituted with one, two, or three substituents;
wherein n is 0, 1, 2, or 3;
provided that an O or S is not singly bonded to another O or S in a chain of atoms. The method according to claim 42, wherein L1 is -C(O)- or -S(0)2-.
44. The method according to claim 43, wherein L1 is -C(O)- and R1 is -OR11 or -(CH2- )„Rn, -OCi-C6alkyl-mono-Ci-C6alkyl amino, -OCi-C6alkyl-di-Ci-C6alkyl amino, -OCi-Cealkyl-N-heterocyclyl, -Ci-Cealkyl-mono-Ci-Cealkyl amino, -C\- C6alkyl-di-Ci-C6alkyl amino, or -Ci-C6alkyl-N-heterocyclyl.
45. The method according to claim 43, wherein, R1 is Cj-C6-alkoxy-Ci-C6-alkoxy.
46. The method according to claim 43, wherein R1 is methoxyethoxy.
47. The method according to claim 42 or 44, wherein, R2 is phenoxy phenyl wherein each phenyl is optionally substituted with one or two R50 substituents.
48. The method according to claim 47, wherein the compound comprises the absolute stereochemistry of structural formula III:
Figure imgf000073_0001
49. The method according to claim 42, where in the compound is selected from:
Figure imgf000073_0002
Figure imgf000074_0001
Figure imgf000075_0001
Figure imgf000076_0001
Figure imgf000077_0001
Figure imgf000078_0001
Figure imgf000079_0001
Figure imgf000080_0001
Figure imgf000081_0001
50. The method according to claim 42, wherein the compound is
Figure imgf000081_0002
51. The method according to claim 22, 41 , or 50, wherein the compound is in the form of an Mg2+ salt.
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