WO2013013268A1 - Platelet assessment assays, diagnosis and kits therefor - Google Patents

Platelet assessment assays, diagnosis and kits therefor Download PDF

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Publication number
WO2013013268A1
WO2013013268A1 PCT/AU2012/000883 AU2012000883W WO2013013268A1 WO 2013013268 A1 WO2013013268 A1 WO 2013013268A1 AU 2012000883 W AU2012000883 W AU 2012000883W WO 2013013268 A1 WO2013013268 A1 WO 2013013268A1
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Prior art keywords
platelets
pmr
test
relationship
assay
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PCT/AU2012/000883
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French (fr)
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Elizabeth GARDINER
Robert Andrews
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Monash University
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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/86Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving blood coagulating time or factors, or their receptors
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/705Assays involving receptors, cell surface antigens or cell surface determinants
    • G01N2333/70546Integrin superfamily, e.g. VLAs, leuCAM, GPIIb/GPIIIa, LPAM
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00Detection or diagnosis of diseases
    • G01N2800/22Haematology
    • G01N2800/222Platelet disorders

Definitions

  • This invention relates generally to assays and kits for assessing or monitoring the proteolytic state of platelets in blood , samples, such as whole blood or fractions thereof, from a subject.
  • the present invention enables assays useful in diagnosis, prognosis, monitoring, treatment or stratification of a human or non-human mammalian subject with respect to thrombocytopenia or conditions associated with thrombocytopenia.
  • the present invention has practical uses, inter alia, in the treatment and management of thrombocytopenia and may be used in existing or newly developed knowledge-based architecture or platforms associated with pathology services.
  • Platelets are small, anuclear fragments of megakaryocytes that circulate in the blood and make essential contributions to functions such as blood clotting and wound healing. They play a central role in cardiovascular disease, blood homeostasis, inflammation and tumor metastasis. They are produced by megakaryocytes which are large, polyploid cells that deve lop in the bone marrow and spleen . Megakaryocytes release platelets into the blood stream where, in humans, they circulate for around 7 to 10 days where they may take part in a haemostatic process or proceed to destruction by the reticuloendothelial system, primarily in the liver and spleen.
  • thrombocytopenia low platelet count
  • thrombocytopenia is a common problem in the clinic, particularly in haematological and oncological practice, and leads to potentially fatal haemorrhagic episodes. It can occur congenitally, and a number of inherited disorders having been defined, but the majority of thrombocytopenias seen in the clinic are the result of other causes. It can be a major problem for patients undergoing cancer chemotherapy. Acute episodes of cytotoxic drug-related thrombocytopenia, in addition to putting the patient at immediate risk, can force dose modifications or treatment withdrawal.
  • thrombocytopenia is also frequently encountered in myelodysplasia syndromes (MDS), idiopathic thrombocytopenia purpura (ITP), antiphospholipid antibody syndrome (APS) and thrombotic thrombocytopenia purpura (TTP), and chronic liver disease, and is also associated with viral infections, particularly AIDS and bacterial infection and sepsis. In these more chronic contexts, thrombocytopenia may result from defective platelet production through bone marrow defects, or elevated platelet destruction often as the result of autoimmune reactions.
  • Treatment for low platelet numbers includes platelet transfusion for subjects with bone marrow defects, and steroid therapy where immune mediated destruction of platelets is indicated, both of which are only short term solutions and carry significant clinical risks.
  • Platelet transfusion for example, can give rise to immunohaematological side-effects and risk of infection which can be associated with morbidity and mortality. If autoimmune mediated thrombocytopenia is misdiagnosed, patients can be exposed to high levels of steroids or immunosuppressants that will not treat the thrombocytopenia and are likely to provoke significant unwanted side effects.
  • Current methods of distinguishing between thrombocytopenia caused by platelet destruction and thrombocytopenia caused by reduced platelet production involve invasive and time consuming bone marrow biopsy.
  • [0007J Receptors spanning the platelet membrane such as the von Willebrand factor receptor GP (glycoprotein) Ib-IX-V complex and GPVI that binds collagen form a unique adheso-signaling complex which acts synergistically to initiate platelet adhesion, activation and integrin dependent aggregation in haemostasis and thrombosis (Gardiner et ah, Journal of Thrombosis and Haemostasis 5: 1530-1537, 2007 incorporated herein in its entirety by reference).
  • GP von Willebrand factor receptor GP
  • GPIb is a heterodimeric transmembrane protein.
  • the receptor comprises a large GPlba chain disulfide linked to a smaller GPIbp chain.
  • the a-chain comprises an N-terminal ectodomain and a C-terminal cytoplasmic domain.
  • Ectodomain shedding is mediated by metalloproteinases which cleave the ectodomain close (proximal) to the platelet membrane.
  • ectodomain portions of GPV and GPVI are also shed.
  • the residual portion of GPlba that is retained after shedding, is associated with the platelet membrane and is disulfide linked to GPIbp.
  • the residual portion comprises a small, unshed ectodomain portion N-terminal to the G465V cleavage site and a cytoplasmic portion domain C-terminal to the G465V cleavage site.
  • the present invention enables assays for evaluating the proteolytic status of platelets by assessing the proteolytic status of a shed platelet membrane receptor (referred to herein as "PMR") including one of GPlba, GPV and GPVI. »n
  • PMR shed platelet membrane receptor
  • Some aspects of the method are predicated, in part, upon the determination by the inventors that a measure of the proportion of intact receptor out of the total amount of receptor, whether intact or cleaved, provides an improved and informative assessment of platelet state in healthy and thrombocytopenic subjects.
  • a statistically significant reduction in intact GPlba relative to total GPlba was observed in subjects with idiopathic thrombocytopenia (ITP), antiphospholipid antibody syndrome (APS) and thrombotic thrombocytopenia purpura (TTP), compared to healthy controls.
  • ITP idiopathic thrombocytopenia
  • APS antiphospholipid antibody syndrome
  • TTP thrombotic thrombocytopenia purpura
  • the assay indicated an increased shedding of the GPlba ectodomain of GPlba that was independent of platelet numbers.
  • the measured levels of platelet bound GPlba ectodomain alone or the levels of the cytoplasmic domain of GPlba alone were uninformative in this respect.
  • the proteolytic state of GPlba and at least one of GPV and GPVI is assessed.
  • the thrombocytopenic subjects had a form of thrombocytopenia which is associated with supernormal peripheral platelet destruction.
  • a high ratio or range of ratios e.g., 0.9-1.0 or 0.85-1.0 (arbitrary values) of intact to total GPlba was found in healthy subjects.
  • a lower ratio or range of ratios such as 0.8 and below or 0.85 and below, was found in samples subjected to cleavage agents or in subjects with thrombocytopenias characterized by elevated platelet clearance. Thresholds can be determined by the skilled addressee using recognized procedures.
  • Proteolytic state of platelets is determined in the assays as a measure of the proportion of platelets in a sample that have an intact PMR or a measure of this proportion of PMR that is intact out of the total number of detected receptors.
  • Healthy subjects for example, those subjects not exhibiting thrombocytopenia
  • Thrombocytopenic subjects have low levels of platelets but if their thrombocytopenia is due to bone marrow deficits then the platelets in circulation or stored are not characterised by supernormal levels of cleaved PMR as determined herein.
  • subjects with increased levels of platelet clearance exhibit increased levels of PMR cleavage.
  • Their proportion of intact to total PMR is reduced to less than 90%, less than 85%, less than 80%, less than 75%, or even less than 70% in some subjects. This proportion is expressed as a test relationship and compared to a control or a corresponding reference relationship to determine the significance of the test value obtained.
  • diagnostic threshold values are obtained by analysis of large numbers of test and reference subjects and illustrative values are provided herein.
  • the present assays provide a significant advance over less informative prior art methods of non-invasively assessing platelets and thrombocytopenia.
  • the present assays permit qualitative and quantitative assessments of proteolytic status of platelets which are independent of the platelet number and independent of GPlba surface levels. This may be used to assess whether a subject has thrombocytopenia as a result of elevated platelet clearance or as a result of decreased platelet production.
  • the present assay provides an early indication of a subject's response to treatment for thrombocytopenia.
  • the subject assays facilitate stratification of thrombocytopenia as thrombocytopenia including defects in platelet production and/or thrombocytopenia including altered platelet function such as enhanced platelet activation/destruction/clearance.
  • the invention has been illustrated using the human GPIba platelet receptor as an exemplary PMR, the skilled person will appreciate that other similar cleaved platelet receptors may be assayed using the same approach to provide useful information concerning the proteolytic cleavage state of platelets.
  • the proteolytic state of GPIba and at least one of GPV and GPVI is assessed.
  • ITP, APS and TTP are illustrative examples of conditions associated with elevated levels of platelet clearance, however any such condition is encompassed.
  • the present invention enables an assay for assessing the proteolytic state of test platelets in a biological sample.
  • the assays comprise detecting the level of intact platelet membrane receptor (PMR) associated with platelets (a), and the level of total (cleaved and uncleaved) PMR (b) associated with platelets in the sample, and comparing a ratio or other measure of the relationship between levels (a) and (b) (a "test relationship") to a corresponding ratio or relationship measure derived from at least one reference biological sample (a "reference relationship”) selected from a sample obtained from one or more normal (e.g.
  • PMR platelet membrane receptor
  • normal reference relationship or from one or more reference samples having predetermined levels of intact and total PMR indicating that the reference sample has supernormal levels of cleaved PMR associated with platelets
  • supernormal cleavage reference relationship indicates the proteolytic state of platelets in the test sample
  • a similarity between the test relationship and the normal reference relationship or a difference between the test relationship and the supernormal cleavage reference relationship indicates the absence of supernormal levels of proteolytic cleavage in test platelets.
  • a similarity between the test relationship and the supernormal cleavage reference relationship or a difference between the test relationship and the normal reference relationship indicates the presence of supernormal levels of proteolytic cleavage in test platelets.
  • the assay comprises (i) contacting test platelets with an agent capable of permeabilizing platelets. This permeabilization step is used when the PMR antigen binding molecule that binds the residual domain of the PMR, binds to a cytoplasmic region of the residual domain.
  • the assays comprise (i) or (ii) contacting test platelets with a PMR antigen-binding molecule that binds to the ectodomain (that extracellular portion of the PMR which is shed from the surface of the platelet after cleavage of the receptor ("shed") close to the platelet membrane) of PMR on the surface of platelets to provide a measure of the level of intact PMR receptor; (iii) contacting test platelets with a PMR antigen-binding molecule that binds to the residual domain (that portion of the receptor retained after ectodomain shedding) of PMR associated with platelets after ectodomain cleavage to provide a measure of the level of total (cleaved and uncleaved) PMR receptor ("total”); (iv) comparing a ratio or other measure of the relationship between the measured level in (ii) and (iii) ("test relationship”) to a corresponding relationship measure from at least one reference sample (“reference relationship”) selected from a sample
  • the antigen- binding molecule that binds to the residual domain binds to the cytoplasmic domain of PMR.
  • platelets are permeabilized with, for example, a mild detergent to allow intracellular access of antibodies to the cytoplasmic domain, if required.
  • the antigen binding molecule is/are labeled with a detectable substance.
  • a similarity between the test relationship and the normal reference relationship or a difference between the test relationship and the supernormal cleavage reference relationship indicates the absence of supernormal levels of proteolytic cleavage in test platelets
  • a similarity between the test relationship and the supernormal cleavage reference relationship or a difference between the test relationship and the normal reference relationship indicate the presence of supernormal levels of proteolytic cleavage in test platelets.
  • the test platelets are stored platelets, such as platelets in stored blood or stored platelet concentrates.
  • the biological sample is whole blood.
  • blood is fractioned or processed to remove one or more cellular components other than platelets.
  • the assay further comprises contacting platelets with an RNA-staining molecule and measuring the level of RNA in test platelets as an indication of platelet age.
  • the PMR receptor is GPIba.
  • the ectodomain is N-terminal to G465V or the equivalent amino acid in a homolog of GPIba.
  • the residual domain of GPIba is C-terminal to G465V or the equivalent amino acid in a GPIba homolog.
  • the PMR receptor is GPV.
  • the ectodomain is N-terminal to P494V or the equivalent amino acid in a GPV homolog.
  • the residual domain of GPV is C-terminal to P494V or the equivalent amino acid in a GPVI homolog.
  • the PMR receptor is GPVI.
  • the ectodomain is N-terminal to P243Q or the equivalent amino acid in a GPVI homolog.
  • the residual domain of GPVI is C-terminal to P243Q or the equivalent amino acid in a GPVl homolog.
  • the subject assay is provided for use in the diagnosis, prognosis, monitoring, treatment or management of conditions associated with thrombocytopenia or for use in the management of stored blood products.
  • the assay is suitable for and employs flow cytometry as the detection system.
  • the antigen binding molecule that binds to the ectodomain of PMR on the surface of platelets is labelled with a first fluorescent or other detectable molecule
  • the antigen binding molecule that binds to the residual domain of PMR receptor associated with platelets after receptor cleavage is labelled with a second fluorescent or other detectable molecule.
  • test platelets are subjected to flow cytometry to detect and provide a measure of the level of intact PMR receptor or proportion of platelets with intact PMR receptor ("intact”) and to detect and provide a measure of the level of total (cleaved and uncleaved) PMR receptor or the proportion of platelets with cleaved and uncleaved PMR receptor ("total").
  • the present invention provides a flow cytometric assay for assessing the proteolytic state of test platelets in a biological sample, the assay comprising (i) contacting test platelets with an agent capable of permeabilizing platelets, (ii) contacting test platelets with a PMR antigen-binding molecule that binds to the ectodomain of PMR on the surface of platelets wherein the antigen binding molecule is labelled with a first fluorescent or other detectable molecule to provide a measure of the level of "intact" PMR receptor; (iii) contacting test platelets with a PMR antigen- binding molecule that binds to the residual domain of PMR associated with platelets after ectodomain cleavage and wherein the antigen-binding molecule is labelled with a second fluorescent or other detectable molecule to provide a measure of the level of total (cleaved and uncleaved) PMR receptors ("total”); (iv) subjecting labelled test
  • test relationship a measure of the relationship between the detected levels in (ii) and (iii) ("test relationship") to a corresponding measure of the relationship between the detected levels in (ii) and (iii) from at least one reference sample ("reference relationship") selected from a sample obtained from one or more normal (e.g. healthy or non-thrombocytopenic) reference subjects ("normal reference relationship”) or from one or more reference subjects having predetermined detected levels of intact and total PMR indicating that the reference subject has supernormal measured levels of cleaved PMR associated with platelets (“supernormal cleavage reference relationship”), wherein the similarity or difference between the test and reference relationships indicates the proteolytic state of platelets in the test sample.
  • normal reference relationship normal (e.g. healthy or non-thrombocytopenic) reference subjects
  • supernormal cleavage reference relationship a measure of the relationship between the test and reference relationships indicates the proteolytic state of platelets in the test sample.
  • each PMR may have one or more unique detectable molecules.
  • the assays further comprise contacting platelets with an RNA-staining fluorescent molecule and measuring the level of RNA in test platelets.
  • test and reference relationships are compared for two or more PMR.
  • the antigen binding molecules and/or assays of the present invention may be provided in kit format.
  • the invention provides a kit for assessing the proteolytic state of test platelets in a biological sample, the kit comprising: (i) a PMR antigen-binding molecule that binds to the ectodomain of PMR, wherein the antigen- binding molecule is either immobilized (bound) to one or more test portions and/or contained within a conjugate portion; and/or (ii) a PMR antigen-binding molecule that binds to the residual domain of PMR associated with platelets after ectodomain cleavage, wherein the antigen-binding molecule is either immobilized (bound) to one or more test portions and/or contained within a conjugate portion and (iii) instructions for using the device for assessing the proteolytic status of platelets.
  • the PMR receptor is GPIba.
  • the PMR receptor is GPV.
  • the PMR receptor is GPVI.
  • the GPIba is assessed together with one or two of GPV and GPVI.
  • the invention provides a kit as described herein for use in the diagnosis, prognosis, monitoring, treatment or management of conditions associated with thrombocytopenia or for use in the management of stored blood products.
  • the PMR is GPV.
  • the PMR is GPVI.
  • the PMR is GPIba and the assay further comprises each step wherein the PMR is GPV and/or further comprises each step wherein the PMR is GPVI.
  • the assay comprises detecting (a) and (b) to establish a test relationship for GPIba, GPV and GPVI and determining a reference relationship for GPIba, GPV and GPVI.
  • the present invention contemplates an antigen- binding molecule that is immuno-interactive with the residual domain of GPIba associated with the platelet after proteolytic cleavage and shedding of the ectodomain.
  • the invention provides and an antigen-binding molecule that is immuno-interactive with the ectodomain or residual domain of PMR for use in the assays of the present invention.
  • the present invention provides a solid or semi-solid support comprising at least one antigen-binding molecule that specifically binds to the ectodomain or residual domain of one or more PMR as, broadly described herein, immobilized thereon.
  • the solid or semi-solid assays comprise a spatial array of antigen-binding molecule immobilized thereon suitable for detecting ratios of intact:total PMR.
  • the assays of the present invention distinguish between forms of thrombocytopenia characterized by platelet destruction such as immune mediated thrombocytopenias, where the ratio or value (test relationship) of intact to total GPIba in circulating platelets indicates whether thrombocytopenia results substantially from platelet destruction or substantially from reduced platelet production. Accordingly, in one embodiment, the present assays are useful for stratifying subjects in distinguishing between (i) thrombocytopenia associated with increased clearance in particular immune mediated thrombocytopenias, and (ii) bone-marrow deficiencies resulting in thrombocytopenia, and thus in the management, treatment or prophylaxis of thrombocytopenia.
  • the present invention relates to a method of treatment or prophylaxis of a subject comprising assessing a test sample from the subject for platelet state as described herein and then providing at least one therapy to the subject or conducting further tests and therapies depending upon the results of the assay.
  • therapies include steroid, anti-inflammatory or immunoglobulin therapy, platelet transfusion, plasma exchange, as appropriate.
  • the assays comprise (i) detecting (a or ta) the level of an intact PMR and detecting (b or tb) the level of total (cleaved or uncleaved) PMR associated with platelets in a test biological sample.
  • the methods comprise (ii) comparing a measure of the relationship between levels (a) and (b) (the "test" relationship) to a control.
  • the test relationship is ta tb.
  • the PMR is GPIba.
  • the methods further comprise comparing a measure of the relationship between levels (a) and (b) from the test sample to a corresponding measure of the relationship between levels (a or ra) and (b or rb) derived from a reference biological sample (the "reference" relationship e.g., ra/rb).
  • a measure of the relationship between levels (a) and (b) from the test sample to a corresponding measure of the relationship between levels (a or ra) and (b or rb) derived from a reference biological sample (the "reference" relationship e.g., ra/rb).
  • subjects receive different treatment regimes and/or monitoring regimes based upon the proteolytic state of the platelets determined using the test relationship.
  • subjects identified as having an elevated level of PMR cleavage/shedding may receive an appropriate steroid therapy.
  • step (ii) comprises comparing a measure of the relationship between levels (a) and (b) ("test relationship") to a corresponding relationship measure derived from at least one reference biological sample (“reference relationship") selected from a sample obtained from one or more normal (e.g. healthy) reference subjects ("normal reference relationship”) or from one or more reference samples having predetermined measured levels of intact and total PMR indicating that the reference subject has supernormal measured levels of cleaved PMR associated with platelets (“supernormal cleavage reference relationship”), wherein the similarity or difference between the test relationship and the reference relationship indicates the proteolytic state of platelets in the test sample.
  • test relationship a measure of the relationship between levels (a) and (b)
  • reference relationship a corresponding relationship measure derived from at least one reference biological sample
  • normal reference relationship selected from a sample obtained from one or more normal (e.g. healthy) reference subjects
  • normal reference relationship normal reference relationship
  • reference samples having predetermined measured levels of intact and total PMR indicating that the reference subject has supernormal measured levels of cle
  • the assay comprises (i) contacting test platelets with an agent capable of permeabilizing platelets, (ii) contacting test platelets with a PMR antigen-binding molecule that binds to the ectodomain of PMR on the surface of platelets to provide a measure of the level of intact PMR; (iii) contacting test platelets with a PMR antigen-binding molecule that binds to the residual domain of PMR associated with platelets after ectodomain cleavage to provide a measure of the level of total (cleaved and uncleaved) PMR ("total”); (iv) comparing a measure of the relationship between the measured levels in (ii) and (iii) ("test relationship”) to a corresponding relationship measure from at least one reference sample (“reference relationship”) selected from a sample obtained from one or more normal (e.g.
  • normal reference relationship or from one or more reference subjects having predetermined measured levels of intact and total PMR indicating that the reference subject has supernormal measured levels of cleaved PMR associated with platelets (“supernormal cleavage reference relationship”), wherein the similarity or difference between the test and reference relationships indicates the proteolytic state of platelets in the test sample.
  • a similarity between the test relationship and the normal reference relationship or a difference between the test relationship and the supernormal cleavage reference relationship indicates the absence of supernormal levels of proteolytic cleavage in test platelets, and wherein a similarity between the test relationship and the supernormal cleavage reference relationship or a difference between the test relationship and the normal reference relationship indicate the presence of supernormal levels of proteolytic cleavage in test platelets.
  • the biological sample is whole blood.
  • the assays further comprise contacting platelets with an RNA-staining molecule and measuring the level of RNA in test platelets.
  • the PMR is GPIba.
  • the PMR is GPIba and the assay further comprises steps wherein the PMR is GPV and/or wherein the PMR is GPVI.
  • the antigen binding molecule that binds to the ectodomain of PMR on the surface of platelets is labelled with a first fluorescent or other detectable molecule, wherein the antigen binding molecule that binds to the residual domain of PMR associated with platelets after receptor cleavage is labelled with a second fluorescent or other detectable molecule, and wherein test platelets are subjected to flow cytometry to provide a measure of the level of intact PMR or proportion of platelets with intact PMR ("intact") and a measure of the level of total (cleaved and uncleaved) PMR or the proportion of platelets with cleaved and uncleaved PMR ("total").
  • subjects identified as having an elevated bend of PMR cleavage may receive an appropriate steroid therapy.
  • the invention enables an assay to monitor the response of a thrombocytopenic subject to therapy such as steroid or antiinflammatory therapies.
  • a test relationship in this case GPIba intac total ratio provided an early marker of platelet status and platelet recovery during treatment. Accordingly, the subject assays are useful for indicating whether further similar treatment is warranted or that a different treatment such as platelet transfusion is warranted.
  • the assays facilitate the identification of appropriate treatment protocols and are also instructive in pharmacotranslational studies and in the clinical management of patients.
  • the present assay may be used to guide drug discovery and testing for agents that modulate platelet survival, production or clearance, or platelet function in a subject or blood product, as appropriate.
  • Figure 1 is a pictorial representation of a flow cytometry assay to assess the level of intact GPIba (red fluorochrome) and total GPIba (green fluorochrome) in a. circulating platelet population.
  • the ratio of red to green fluorescence reflects the proteolytic status of GPIba, and therefore platelet age and extent of platelet activation and destruction.
  • Figure 2 is a pictorial representation of platelet membrane receptors GPIba, GPV and GPVI which undergo shedding in vivo.
  • the cleavage sites for each shed receptor have been identified in humans and antibodies or other antigen binding molecules are routinely generated against shed ectodomain or residual (cytoplasmic) domains (see Shen et al, Blood 95: 903-910, 2000; Gardiner et al, 2007 (supra)).
  • Figure 3 is a graphical representation of technical data showing that GPIba intac total ratio is a marker for ITP thrombocytopenia and further provides an early marker for platelet recovery during steroid or other therapy.
  • Figure 4 is a graphical representation of data showing the temporal relationship between GPIba index (Intact/Total) and platelet count in ITP-C subject shown to be responsive to steroids after one month.
  • Figure 5 is a graphical representation of data showing the temporal relationship between GPIba index (Intact/Total) and platelet count in ITP-X subject non responsive to steroids, treated with azathioprine at arrow.
  • Figure 6 is a graphical representation of data showing the temporal relationship between GPIba index (Intact/Total) and platelet count in ITP-V subject treated with thrombopoietin (TPO) mimic, Romip!ostim.
  • GPIba index Intact/Total
  • TPO thrombopoietin
  • Figure 7 is a graphical representation of data showing the temporal relationship between GPIba index (IntactAOtal) and platelet count in ITP-J subject treated with steroids, then the TPO mimic Romiplostim at arrow.
  • antigen-binding molecule is meant a molecule that has binding affinity for a target antigen.
  • the target antigen is a PMR, including the shed ectodomain portion thereof or the residual (including cytoplasmic) portion thereof as described elsewhere herein. It will be understood that this term extends to immunoglobulins, immunoglobulin fragments and non-immunoglobulin derived protein or protein frameworks that exhibit antigen-binding activity.
  • e immunoglobulins, immunoglobulin fragments and non-immunoglobulin derived protein or protein frameworks that exhibit antigen-binding activity.
  • an antigen-binding molecule refers to a binding reaction which is determinative of the presence of an antigen in the presence of a heterogeneous population of proteins and other biologies.
  • the specified antigen-binding molecules bind to a particular antigen and do not bind in a significant amount to other proteins or antigens present in the sample.
  • Specific binding to an antigen under such conditions may require a antigen-binding molecule that is selected for its specificity for a particular antigen.
  • antigen-binding molecules can be raised to a selected protein antigen, which bind to that antigen but not to other proteins present in a sample.
  • immunoassay formats may be used to select antigen-binding molecules specifically immuno-interactive with a particular protein.
  • solid-phase ELISA immunoassays are routinely used to select monoclonal antibodies specifically immuno-interactive with a protein. See Harlow and Lane, "Antibodies, A Laboratory Manual", Cold Spring Harbor Publications, New York, 1988 for a description of immunoassay formats and conditions that can be used to determine specific immunoreactivity.
  • Reference herein to "immuno-interactive” includes reference to any interaction, reaction, or other form of association between molecules and in particular where one of the molecules is, or mimics, a component of the immune system.
  • biological sample refers to a sample comprising platelets that may be extracted, substantially untreated (anticoagulant may be present), diluted or concentrated or derived from a subject.
  • the sample includes a biological fluid containing platelets such as, without limitation, whole blood or fraction thereof including platelets, purified or concentrated platelets.
  • Samples include blood or blood fractions from subjects who are thrombocytopenic and therefore have a low number of platelets in the blood or fraction.
  • the components of the test or reference samples including platelets, and detection marker-antigen complexes and components thereof may be moved relative to each other by capillary flow or diffusion through chromatographic material. The material *n
  • - 18 - may be functionalized or coated to permit, for example, cross-linking of reagents.
  • Methods for immobilizing antibodies or other binding agents to solid supports are well known in the art and are described for example in US Patent No. 4, 168, 146, Cautrecases, J. Biol. Chem. 245: 3059, 1970.
  • Materials contemplated for use herein include inorganic materials such as silica, glass, polymeric material such as cellulose, starch, dextrose, agarose, special fibrous paper (filter/chromatography paper) nitrocellulose, cellulose acetate, PVC, polyacrylamide, polysaccharide, polyacrylate, polyethylensulphonate, polyethylene and the like.
  • Chromatographically active components are simply those capable of flow through all or part of the immunochromatographic device. Chromatographic assays are particularly sophisticated and a large number of different formats are available which are tailored to the particular reagents and instruments and the outcomes required in any particular investigation. "Rapid” assays, using chromatographic principles, are tailored for accuracy, speed and ease of use. Immunoassay or enzyme- based chromatographic assays are particularly preferred and these are described in Wild D, "The Immunoassay Handbook", Nature Publishing Group, 2001 and by reference to U.S. Patent Nos.
  • control broadly includes data that the skilled person would use to facilitate the accurate interpretation of technical data.
  • a "difference" between test and reference values includes at least about 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85% or 90%, or even an at least about 100%, 200%, 300%, 400%, 500%, 600%, 700%, 800%, 900% or 1000% increase or decrease between values.
  • a "similarity" between test and reference values includes no more than about 20%, 18%, 16%, 14%, 12%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1 % or 0.1 % difference between values.
  • the ratio of intact:total GPlba (or total to intact GPlba) from test platelets or a test subject are compared to reference ratios(s) in one or more cohorts (populations/groups) of reference subjects whose platelet status is established (pre-determined).
  • reference subjects include normal subjects with normal platelets or thrombocytopenic subjects with functionally or proteolytically normal platelets.
  • the reference sample may be a sample from the test subject taken at an earlier time point.
  • a reference subject is a group of reference subjects.
  • the measured level or ratio in a reference subject group may be a mean value or a preselected level, threshold or range of levels or ratios that define, characterize or distinguish a particular group.
  • thresholds may be selected- that provide an acceptable ability to distinguish between platelet states.
  • a threshold or range is selected, above which (or below which) the test is considered to be "positive” and below which the test is considered to be "negative”.
  • ratio thresholds are selected to discriminate between subjects (such as between thrombocytopenic subjects) with at least about 60%, 65%, or 70% accuracy.
  • Reference herein to "derived from” means that the sample is obtained from a particular source but not necessarily directly from that source.
  • platelet proteolytic state includes proteolytic or shedding status (loss or otherwise of PMR ectodomain N-terminal to ectodomain cleavage site) which is associated with the risk or rate of platelet clearance, platelet activation or functional status (e.g., in relation to thrombus formation, thrombocytic activity, or wound healing capability).
  • the state of platelets includes an indication of the proportion of platelets having shed PMR ectodomains or the surface density of intact PMR.
  • the assay also provides and the platelet state includes an indication of the rate of receptor shedding or rate of change of receptor shedding in test platelets from a test subject, or in stored platelets.
  • detecting includes assessing the level of "intact” and “total” PMR or more particularly, the ratio of “intact” and “total” PMR by assessing the reporter signal from a detectable marker directly or indirectly attached to the "intact” PMR binding agent (antibody or fragment) or “total” PMR-binding agent (antibody or fragment thereof). Assessment may be by instrument or by visual comparison, typically with pre-determined controls.
  • detection marker or "reporter molecule”
  • detection substance a molecule or particle which, by its chemical nature, provides an analytically identifiable signal which allows the detection and quantification of antigen bound antibody detection may be qualitative or quantitative. By qualitative is meant for example, that the user may observe a similarity or difference between test and reference ratios in order to assess the outcome of the test/method.
  • Antigen binding molecules may be labeled with the same or different reporter molecules. Fluorophores are particularly useful (see Table 6). Other labels include luminescence and phosphorescence as well as infrared dyes. As will be well recognized, a wide variety of different reporter systems employing detectable molecules (substances) are available. Those allowing rapid visual detection are clearly the most useful in the context of point of care diagnostics.
  • normal is used to broadly refer to the phenotype of platelet proteolytic state that is characteristic of most of the members of the species occurring naturally. However, as thrombocytopenia caused by loss of platelet production involves platelets with substantially non-supernormal levels of proteolytic cleavage, platelets from such subjects are also considered normal and provide an example of normal platelets in accordance with the ⁇ present invention. "Supernormal” merely refers to more than normal.
  • Stratification includes identification, diagnosis, clarification, monitoring and/or determination of thrombocytopenia by evaluating the state of platelets in a subject. The process involves identifying an increased or supra normal level of platelet membrane receptor shedding or decreased platelet shedding or normal levels of platelet shedding of platelets in a test subject. Increased shedding is indicative inter alia that a subject relative to a normal subject has increased platelet clearance such as is found in immune mediated thrombocytopenia.
  • decreased shedding or improved platelet status is indicated by an increased PMR intactrtotal value which is at least 10%, 1 1%, 12%, 13%, 14%, 15%, 16%, 17%, 18%, 19%, 20%, 30%, 40%, 50%, 60%, 70%, 80% or 90% more than pre-treatment values.
  • subjects are monitored and treatment is maintained until the PMR. intact to total percentage value reaches at least 99%, 98%, 97%, 96%, 95%, 94%, 93%, 92%, 91 % or 90%, of the level from a corresponding reference percentage from a normal control subject.
  • decreased shedding is indicated by a PMR intact:total value of that varies from a corresponding value or a low level of platelet shedding from a normal reference sample by no more than about 20, 18, 16, 14, 12, 10, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1% or 0.1%.
  • the referenced relationship value is 1 or 1 : 1 or 100%.
  • Suitable vertebrate animals that fall within the scope of the invention include, but are not restricted to, primates, livestock animals (e.g., sheep, cows, horses, donkeys, pigs), laboratory test animals (e.g., rabbits, mice, rats, guinea pigs, hamsters), companion animals (e.g., cats, dogs) and captive wild animals (e.g., foxes, deer, dingoes) provided the subject has essentially anuclear platelets.
  • livestock animals e.g., sheep, cows, horses, donkeys, pigs
  • laboratory test animals e.g., rabbits, mice, rats, guinea pigs, hamsters
  • companion animals e.g., cats, dogs
  • the present invention contemplates the use of antigen-binding molecules that are specifically immuno-interactive with different domains of a PMR polypeptide for assessing platelet state in a test sample.
  • the antigen-binding molecule is a whole polyclonal antibody.
  • Such antibodies may be prepared, for example, by injecting the GPIb domain of interest (antigen) or peptide portions thereof into a production species, which may include mice or rabbits, to obtain polyclonal antisera. Methods of producing polyclonal antibodies are well known to those skilled in the art.
  • monoclonal antibodies may be produced using the standard method as described, for example, by Kohler and Milstein, Nature 256: 495-497, 1975, or by more recent modifications thereof as described, for example, in Coligan et ah, 1991 (supra) by immortalizing spleen or other antibody producing cells derived from a production species which has been inoculated with one or more antigens.
  • the invention also contemplates as , antigen-binding molecules Fv, Fab, Fab' and F(ab') 2 immunoglobulin fragments.
  • the antigen-binding molecule may comprise a synthetic stabilized Fv fragment.
  • Exemplary fragments of this type include single chain Fv fragments (sFv, frequently termed scFv) in which a peptide linker is used to bridge the N terminus or C terminus of a V H domain with the C terminus or N- terminus, respectively, of a V f domain.
  • sFv single chain Fv fragments
  • ScFv lack all constant parts of whole antibodies and are not able to activate complement.
  • ScFvs may be prepared, for example, in accordance with methods outlined in Kreber et ah, J.
  • the synthetic stabilized Fv fragment comprises a disulfide stabilized Fv (dsFv) in which cysteine residues are introduced into the V w and V L domains such that in the fully folded Fv molecule the two residues will form a disulfide bond between them.
  • dsFv disulfide stabilized Fv
  • Suitable methods of producing dsFv are described for example in (Glockscuther et ah Biochem.
  • Phage display and combinatorial methods for generating antigen-binding molecules are known in the art (as described in, e.g., Huse et ah, Science 246: 1275-1281 , 1989; Griffths et ah, EMBO J 12: 725-734, 1993; Hawkins et ah, J Mol Biol 226: 889- 896, 1992; Clackson et ah, Nature 352: 624-628, 1991 ; Gram et ah, PNAS 89: 3576- 3580, 1992; Garrad et al, Bio/Technology 9: 1373-1377, 1991 ; Hoogenboom et al, Nuc Acid Res 19: 4133-4137, 1991 ; and Barbas et al, PNAS 88: 7978-7982, 1991).
  • Detection of antigen binding molecules can be facilitated by coupling (e.g., physically linking) them to a detectable substance (i.e., antibody labeling).
  • detectable substances include various enzymes, prosthetic groups, fluorescent materials, luminescent materials, bioluminescent materials, and radioactive materials.
  • suitable enzymes include horseradish peroxidase, alkaline phosphatase, ⁇ -galactosidase, or acetylcholinesterase;
  • suitable prosthetic group complexes include streptavidin/biotin and avidin biotin;
  • suitable fluorescent materials include umbelliferone, fluorescein, fluorescein isothiocyanate, rhodamine, dichlorotriazinylamine fluorescein, dansyl chloride or phycoerythrin (a list of suitable fluorophores is provided in Table 6);
  • an example of a luminescent material includes luminol;
  • bioluminescent materials include luciferase, luciferin, and aequorin, and
  • suitable radioactive material include l25 l, , 3 I I, 35 S or 3 H.
  • the label may be selected from a group including a chromogen, a catalyst, an enzyme, a fluorophore, a chemiluminescent molecule, a lanthanide ion such as Europium (Eu 34 ), a radioisotope and a direct visual label.
  • a direct visual label use may be made, of a colloidal metallic or non-metallic particle, a dye particle, an enzyme or a substrate, an organic polymer, a latex particle, a liposome, or other vesicle containing a signal producing substance and the like.
  • Enzyme labels useful in the present invention include alkaline phosphatase, horseradish peroxidase, luciferase, ⁇ -galactosidase, glucose oxidase, lysozyme, malate dehydrogenase and the like.
  • the enzyme label may be used alone or in combination with a second enzyme in solution.
  • the proteolytic state of platelets and levels of PMR domains can be assayed using any suitable method known in the art.
  • Antibody-based techniques include immunohistological and immunohistochemical methods for measuring the level of a protein of interest in a tissue sample. Specific recognition may be provided, for example, by a primary antibody (polyclonal or monoclonal) and a secondary detection system is used to detect presence (or binding) of the primary antibody. Detectable labels can be conjugated to the secondary antibody, such as a fluorescent label, a radiolabel, or an enzyme (e.g., alkaline phosphatase, horseradish peroxidase) which produces a quantifiable, e.g., colored, product.
  • an enzyme e.g., alkaline phosphatase, horseradish peroxidase
  • the primary antibody itself can be detectably labeled.
  • immunohistological labeling of a tissue section is provided.
  • a protein extract is produced from a biological sample (e.g., tissue, cells) for analysis.
  • a biological sample e.g., tissue, cells
  • Such an extract e.g., a detergent extract
  • Such an extract can be subjected to western-blot or dot/slot assay of the level of the protein of interest, using routine immunoblotting methods (Jalkanen et al, J. Cell. Biol. 101: 976-985, 1985; Jalkanen et al., J, Cell. Biol. 105: 3087-3096, 1987).
  • antibody-based methods include immunoassays, such as the enzyme-linked immunosorbent assay (ELISA) and the radioimmunoassay (RIA).
  • immunoassays such as the enzyme-linked immunosorbent assay (ELISA) and the radioimmunoassay (RIA).
  • ELISA enzyme-linked immunosorbent assay
  • RIA radioimmunoassay
  • an antigen-specific monoclonal antibody can be used both as an immunoadsorbent and as an enzyme-labeled probe.
  • the amount of such protein present in a sample can be calculated by reference to the amount present in a standard preparation using a linear regression computer algorithm (see Lacobilli et al., Breast Cancer Research and Treatment 11: 19-30, 1988).
  • Flow cytometry using commercial or microfabricated flow cytometry without limitation to any particular flow cytometer and/or biosensor methods are also contemplated. Different assays have different requirements for agents, washing steps, incubation periods and the like and these are known to the skilled addressee.
  • Fluorescence based detection systems are particularly suitable for flow cytometric analysis. Other methods of analyzing fluorescence emissions are contemplated such as 2-photon and 3-photon time resolved fluorescence spectrometry, fluorescence lifetime imaging and fluorescence resonance energy transfer as known in the art. Any optical means for identifying labels may be used. Electromagnetic scattering from light and X-rays may be employed.
  • the assay is a flow cytometry based assay.
  • Flow cytometry is a powerful tool for characterizing and enumerating cells.
  • the flow cytometer detects and counts individual platelets passing in a stream through a laser beam. By examining a large number of cells, flow cytometry can provide quantitative data on the percentage of cells bearing different molecules.
  • platelets are contacted with a first binding agent that binds to the residual do main of the PMR receptor and a second binding agent that binds to the ectodomain of the PMR. These agents are conveniently labelled with different detection markers such as fluorescent or chemiluminescent dyes.
  • one or more further binding agents that bind to the receptor domain or to a binding agent directly or indirectly bound to the receptor domain may be employed.
  • the second or subsequent binding agent is typically labelled with a detection or detectable marker to facilitate evaluating the level of the two forms of the receptor (intact or cleaved) associated with test platelets in the test sample.
  • the suspended mixture of labelled cells is then forced through an aperture, creating a fine stream of liquid containing cells spaced singly at intervals.
  • each cell passes through a laser beam it scatters the laser light, and any dye molecules bound to the cell will be excited and will fluoresce.
  • Sensitive photomultiplier tubes detect both the scattered light, which gives information on the size and granularity of the cell, and the fluorescence emissions, which give information on the binding of the labelled binding agents and hence on the characteristics of each platelet in the population.
  • the data may be displayed in the form of a two-dimensional scatter diagram or as a contour diagram, where the fluorescence of one dye-labelled binding agent is plotted against that of a second, with the result that a population of cells labelling with one binding agent can be further subdivided on the basis of its reactivity with another binding agent.
  • Immunoassays are another particularly useful format of assay for the present invention.
  • a wide range of immunoassay techniques are available, such as those described in Wild D, 2001 (supra). Reference may also be made to Chapter 1 1 of Ausubel (Ed), "Current Protocols in Molecular Biology", 5 th Edition, John Wiley & Sons, Inc, NY, 2002.
  • ELISA enzyme-linked immunosorbent assay
  • RIA radio-immunoassay
  • Arrays and high throughput screening methods are also employed. These methods generally require a high level of skill in laboratory techniques.
  • a wide range of immunoassay techniques are available that providing qualitative or quantitative results. These include both single-site and two-site or “sandwich” assays of the non-competitive types, as well as in the traditional competitive binding assays. Sandwich assays are among the most useful and commonly used assays and are favored for use in the present invention. A number of variations of the sandwich assay technique exist, and all are intended to be encompassed by the present invention. Briefly, in a typical forward assay, an antibody is immobilized on a solid or semi-solid substrate and the sample to be tested brought into contact with the bound molecule.
  • a second antibody specific to the antigen, labelled with a detection molecule capable of producing a detectable signal is then added and incubated, allowing time sufficient for the formation of another complex of antibody-antigen- labelled antibody. Any unreacted material is washed away, and the presence of the antigen is determined by observation of a signal produced by the detectable marker (reporter molecule).
  • the results may be qualitative or quantitative, by simple observation of the visible signal, or may be quantitated by comparing with a control sample containing known amounts of antigen. Variations on the forward assay include a simultaneous assay, in which both sample and labelled antibody are added simultaneously to the bound antibody.
  • a first antibody having specificity for the PMR domain antigen is either covalently or passively bound to a solid or semi-solid support.
  • the support is typically glass or a polymer, the most commonly used polymers being nitrocellulose, cellulose, polyacrylamide, nylon, polystyrene, polyvinyl chloride, polypropylene or mixture or derivatives of these.
  • the solid supports may be in the form of tubes, beads, discs or microplates, or any other surface suitable for conducting an immunoassay.
  • the binding processes are well-known in the art and generally consist of cross-linking covalently binding or physically adsorbing the polymer-antibody complex to the solid surface which is then washed in preparation for the test sample.
  • a bound target may be detectable by direct labelling with the antibody.
  • a second labelled antibody specific to the first antibody is exposed to the target-first antibody complex to form a target-first antibody-second antibody tertiary complex.
  • the complex is detected by the signal emitted by the reporter molecule.
  • Biosensor devices may be employed to detect and report on antigen-antibody interactions, such as those between the ectodomain of GPIb or GPV or GPVI and an antibody or other binding agent that binds to this domain, and the residual domain of GPIba, GPV or GPVI and an antibody or antigen binding fragment or other binding agent which binds to this domain. Biosensor devices are described, for example, in U.S. Patent Publication No. 20100006452.
  • the method is a liquid phase method.
  • the sample is contacted with an agent capable of binding the antigen and a detector agent comprising a visually detectable agent such as colloidal gold or silver labelled.
  • the test sample is applied by flowing onto a defined zone of an insoluble porous support film having a pore size impassable to a complex formed between the antigen, if present, with the binding substance and the detector substance, but passable to the binding substance and detector substance while remaining uncomplexed in the absence of the desired antigen.
  • the detector substance binds with the antigen and the binding substance to form a visually inspectable complex on the surface of the porous support film.
  • the surface of the porous support is visually inspected for color to determine the presence and quantity or the absence of the antigen being assayed.
  • magnetic antibodies that bind to antigen are used to tag the antigens and a high T c superconducting quantum interference device is used to measure the amount of free and bound antibody and hence the presence or level of antigens.
  • a liposome immunomigration, liquid-phase competition strip immunoassay is, for example, described in Glorio-Paulet et al, J Agric Food Chem 48 (5): 1678-1682, 2000.
  • Biosensor devices may be employed to detect and report on antigen-antibody interactions such as those between the cytoplasmic domain of GPIb and an antibody or other binding agent that binds to this domain, and the ectodomain of GPIba and an antibody or antigen binding fragment or other binding agent which binds to this domain. Biosensor devices are described for example in US Patent Publication No. 20100006452.
  • the detection marker is a colloidal particle or microparticle.
  • Colloidal metal and metalloid particles include those comprising gold, silver, platinum, iron, copper, selenium; metal complexes such as cyclopentadienylmanganese(I) tricarbonyl, gold cluster; and microparticles such as latex and dyed latex particles.
  • the techniques used for detection of PMR domains in platelets will include internal or external standards to permit quantitative or semi-quantitative determination of those products, to thereby enable a valid comparison of the level in a biological sample with the corresponding level in a reference sample or samples.
  • standards can be determined by the skilled practitioner using standard protocols.
  • absolute values for the level of each domain can be determined by the skilled practitioner using standard protocols.
  • the present invention further provides a system where data on which ratio of intact to total PMR are provided by a client server to a central processor which analyses and compares to a control and optionally considers other information such as patient age, sex, weight and other medical conditions and then provides a report, including, for example, a platelet proteolytic state, intact:total PMR ratio or platelet maturity profile.
  • knowledge-based computer software and hardware also form part of the present invention.
  • the assays of the present invention may be used in existing or newly developed knowledge-based architecture or platforms associated with pathology services.
  • results from the assays are transmitted via a communications network (e.g. the internet) to a processing system in which an algorithm is stored and used to generate a predicted posterior probability value which translates to the index of disease probability which is then forwarded to an end user in the form of a diagnostic or predictive report.
  • the assays may, therefore, be in the form of a kit or computer-based system which comprises the reagents necessary to detect the intact to total GPIb ratio and the computer hardware and/or software to facilitate determination or determination and comparison and transmission of reports to a clinician.
  • the present invention contemplates a method of allowing a user to determine the platelet proteolytic state of a subject per se and/or with respect to thrombocytopenia, the method including receiving data in the form of a ratio of intact:total PMR ratio or other relationship value, via a communications network, the method includes conduct of the assay as described herein then transferring data from the user via a communications network; (b) processing the subject data via multivariate analysis to provide, for example, a platelet proteolytic state value; (c) determining the status of the subject in accordance with the results of the value in comparison with predetermined values; and (d) transferring an indication of the status of the subject to the user via the communications network reference to the multivariate analysis includes an algorithm which performs the multivariate or univariate analysis function.
  • the method includes, the method including receiving data in the form of a ratio of intact:total PMR ratio or other relationship value, via a communications network, the method includes conduct of the assay as described herein then transferring data from the user via a communications network.
  • the method generally further includes: (a) having the user determine the data using a remote end station; and (b) transferring the data from an end station to a base station via the communications network.
  • the base station can include first and second processing systems, in which case the method can include: (a) transferring the data to the first processing system; (b) transferring the data to the second processing system; and (c) causing the first processing system to perform the multivariate analysis function to generate the disease index value.
  • the method may also include: (a) transferring the results of the multivariate analysis function to the first processing system; and (b) causing the first processing system to determine the status of the subject.
  • the method also includes at least one of: (a) transferring the data between the communications network and the first processing system through a first firewall; and (b) transferring the data between the first and the second processing systems through a second firewall.
  • the second processing system may be coupled to a database adapted to store predetermined data and/or the multivariate analysis function, the method include: (a) querying the database to obtain at least selected predetermined data or access to the multivariate analysis function from the database; and (b) comparing the selected predetermined data to the subject data or generating a predicted probability index.
  • the second processing system can be coupled to a database, the method including storing the data in the database.
  • the method can also include having the user determine the data using a secure array, the secure array of elements capable of determining the level of lipid analytes and having a number of features each located at respective position(s) on the respective code.
  • the method typically includes causing the base station to: (a) determine the code from the data; (b) determine a layout indicating the position of each feature on the array; and (c) determine the parameter values in accordance with the determined layout, and the data.
  • the method can also include causing the base station to: (a) determine payment information, the payment information representing the provision of payment by the user; and (b) perform the comparison in response to the determination of the payment information.
  • a flow cytometry-based method has been developed for simultaneously analyzing intact/cleaved GPIba in permeabilized platelets in whole blood.
  • a rabbit polyclonal or mouse monoclonal anti-GPIba cytoplasmic domain antibodies (Green) and a rabbit polyclonal or mouse monoclonal anti-GPIba ectodomain antibody (A 2; Red) are used to assess the amount of intact receptor relative to the total amount of tail (intact plus remnant) by flow cytometry ( Figure 1).
  • dual- labeling is lised involving phycoerythrin (PE)-labeled antibody against the GPIba ectodomain
  • platelets are rapidly fixed and washed by centrifugation then permeabilized with 0.1-0.5% (w/v) saponin (ThromboFix) in buffer containing Alexa-488-labeled anti- GPIba cytoplasmic tail IgG.
  • Platelets are then washed in permeabilization buffer to remove any unbound cytoplasmic tail IgG and levels of respective antibody are assessed by flow cytometry, using the forward and side scatter characteristics of platelets and confirmed using antibodies against other platelet receptors ( ⁇ > ⁇ 3, PECAM- 1).
  • the level of Alexa-488 staining reflects the detected total amount of expressed GPIba, while levels of PE staining reflect the detected amount of the ectodomain portion of GPIba (intact GPIba).
  • the GPIba intac total ratio provides a sensitive measure of enhanced GPIb proteolysis in disease states
  • the assay described herein has been verified in platelets from 20 healthy donors and 1 1 patients with thrombocytopenia, by testing untreated platelets or platelets treated with agents known to induce proteolysis of GPIbq in permeabilized versus non- permeabilized platelets, in washed platelets versus whole blood, etc.
  • Flow cytometry data correlate with the degree of shedding assessed by Western blotting platelets from the same samples.
  • An index reporting on the normal range for GPIba molecular status has been developed from data obtained from 20 healthy donors at the Australian Centre for Blood Diseases donor database.
  • GPIba intac total ratio provides a sensitive measure of enhanced proteolysis in disease states, supported by preliminary studies in patients with thrombocytopenia
  • Table 2 shows that there was no significant correlation between GPIba intac total ratio and platelet count, GPIba surface levels or platelet volume in the Thrombocytopenia group.
  • the unknown relative contribution of platelet consumption and platelet production to thrombocytopenia is an ongoing clinical problem.
  • the present invention provides, inter alia, a new clinical tool for monitoring platelet function and survival in thrombocytopenic samples that will aid clinical decision-making in the setting of thrombocytopenia.
  • GPIba (Intact: Total) is a reliable early marker for evaluating ITP and an early marker for evaluating response to treatment
  • Platelet receptor expression and platelet parameters were assessed in patients with idiopathic thrombocytopenia (ITP) before and during steroid treatment.
  • A-IPF absolute-immature platelet fraction
  • TO thiazole orange
  • GPIba Intact:Total is independent of:
  • GPIba Intact:Total
  • GPIba Intact:Total provides an early marker for thrombocytopenia and an early marker for evaluating the response to treatment with steroid therapy or other therapies.
  • Anuclear platelets contain RNA and "reticulated” or immature platelets (reticulocytes) stain positively with thiazole orange (TO) whereas the percentage of reticulated platelets (%RP) decreases the platelets age.
  • reticulated platelets reticulocytes stain positively with thiazole orange (TO)
  • %RP percentage of reticulated platelets
  • the age of a population of platelets has been widely assessed according to the research literature using thiazole orange (TO), a membrane-permeable nucleic acid-specific fluorescent dye.
  • TO thiazole orange
  • %RP is -6% of the total platelet population, but is increased to -70% in patients with ITP, and increases to 28% during the recovery phase of chemotherapy- related thrombocytopenia.
  • GCI glycocalicin index
  • GPIba surface levels are determined.
  • GPIba surface expression decreases as normal platelets age in the circulation, and also varies with platelet count and size. Thus, changes due to disease are not distinguishable, nor can it be determined whether altered levels are due to shedding or other causes.
  • the surface expression levels will also not be sensitive to whether the cause of increased shedding is successfully treated, whereas measuring proteolytic status as determined herein is independent of platelet count and GPIba expression levels.
  • the GPIba index (Intact/total) and platelet counts were determined in subjects (Subjects C, X, V ad J) with chronic ITP before and after various treatment protocols. The results are represented graphically in Figure 4 to Figure 7. Subject C was thrombocytopenic and platelet counts gradually increased over time during steroid therapy (after one month). However, the GPIba index was approximately normal from week 1 to week 20. Subject X was non-responsive to steroids in terms of platelet counts and exhibited low platelet counts. The GPIba index level was initially low, fluctuated, but increased prior to azathioprine treatment notwithstanding decreasing platelet counts.
  • GPIba Upon treatment with azathioprine platelet levels increased and the GPIba index increased to a normal level (0.9).
  • Subject V displayed a rising GPIba index on Romiplostin.
  • an improvement in platelet quality (normalisation of the GPIba Intact:Total ratio) precedes improvement in platelet count (see Figure 7).
  • the proteolytic status of GPIba is a reliable early marker for evaluating response to treatment in ITP patients. Particularly in patients who have a low platelet count such as below 100, or about 100 x 10 6 /1.
  • Treatment with steroids Treatment with steroids (Prednisolone, Dapsone or in combination).

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Abstract

The specification provides assays and kits for assessing the proteolytic state of test platelets in a biological sample or stratifying subjects with respect to thrombocytopenia, the assay comprising detecting the level of intact platelet membrane receptor (PMR) (a) and detecting the level of total (cleaved and uncleaved) PMR (b) associated with platelets in the sample, and comparing a measure of the relationship between levels (a) and (b) ("test relationship") to a corresponding relationship measure derived from at least one reference biological sample ("reference relationship") selected from a sample obtained from one or more normal (e.g. healthy) reference subjects ("normal reference relationship") or from one or more reference samples having predetermined measured levels of intact and total PMR indicating that the reference subject has supernormal measured levels of cleaved PMR associated with platelets ("supernormal cleavage reference relationship"), wherein the similarity or difference between the test relationship and the reference relationship indicates the proteolytic state of platelets in the test sample. In one embodiment the PMR is GPIbα.

Description

TITLE OF THE INVENTION
"PLATELET ASSESSMENT ASSAYS, DIAGNOSIS AND KITS THEREFOR"
FIELD OF THE INVENTION
[0001] This invention relates generally to assays and kits for assessing or monitoring the proteolytic state of platelets in blood , samples, such as whole blood or fractions thereof, from a subject. In particular, the present invention enables assays useful in diagnosis, prognosis, monitoring, treatment or stratification of a human or non-human mammalian subject with respect to thrombocytopenia or conditions associated with thrombocytopenia. The present invention has practical uses, inter alia, in the treatment and management of thrombocytopenia and may be used in existing or newly developed knowledge-based architecture or platforms associated with pathology services.
BACKGROUND OF THE INVENTION
[0002] Bibliographic details of the publications referred to in this specification are collected at the end of the description.
[0003] Platelets are small, anuclear fragments of megakaryocytes that circulate in the blood and make essential contributions to functions such as blood clotting and wound healing. They play a central role in cardiovascular disease, blood homeostasis, inflammation and tumor metastasis. They are produced by megakaryocytes which are large, polyploid cells that deve lop in the bone marrow and spleen . Megakaryocytes release platelets into the blood stream where, in humans, they circulate for around 7 to 10 days where they may take part in a haemostatic process or proceed to destruction by the reticuloendothelial system, primarily in the liver and spleen. Like all lineages of blood cells, the steady state number of mature platelets is the result of a balance between their production and destruction. In normal i.e., healthy individuals, precise control of proliferation, differentiation, survival and clearance of these cells ensures maintenance of homeostasis, and reduces the likelihood of haemorrhage should platelet counts fall, or thrombosis resulting from excess platelet production.
[0004] If the delicate balance between production and destruction is perturbed, thrombocytopenia (low platelet count) can ensue. Thrombocytopenia is a common problem in the clinic, particularly in haematological and oncological practice, and leads to potentially fatal haemorrhagic episodes. It can occur congenitally, and a number of inherited disorders having been defined, but the majority of thrombocytopenias seen in the clinic are the result of other causes. It can be a major problem for patients undergoing cancer chemotherapy. Acute episodes of cytotoxic drug-related thrombocytopenia, in addition to putting the patient at immediate risk, can force dose modifications or treatment withdrawal. Thrombocytopenia is also frequently encountered in myelodysplasia syndromes (MDS), idiopathic thrombocytopenia purpura (ITP), antiphospholipid antibody syndrome (APS) and thrombotic thrombocytopenia purpura (TTP), and chronic liver disease, and is also associated with viral infections, particularly AIDS and bacterial infection and sepsis. In these more chronic contexts, thrombocytopenia may result from defective platelet production through bone marrow defects, or elevated platelet destruction often as the result of autoimmune reactions.
[0005] Treatment for low platelet numbers includes platelet transfusion for subjects with bone marrow defects, and steroid therapy where immune mediated destruction of platelets is indicated, both of which are only short term solutions and carry significant clinical risks. Platelet transfusion, for example, can give rise to immunohaematological side-effects and risk of infection which can be associated with morbidity and mortality. If autoimmune mediated thrombocytopenia is misdiagnosed, patients can be exposed to high levels of steroids or immunosuppressants that will not treat the thrombocytopenia and are likely to provoke significant unwanted side effects. Current methods of distinguishing between thrombocytopenia caused by platelet destruction and thrombocytopenia caused by reduced platelet production involve invasive and time consuming bone marrow biopsy.
[0006] There is a need for improved assays and clinical tools that are able to assess the state of circulating platelets and thereby facilitate inter alia the diagnosis, treatment and management of thrombocytopenia or other conditions affected by platelet proteolytic state (shedding). There is also a need for assays to qualitatively and quantitatively assess the state of platelets in a biological sample from a subject and in stored blood samples or fractions thereof including platelet fractions.
SUMMARY OF THE INVENTION
[0007J Receptors spanning the platelet membrane such as the von Willebrand factor receptor GP (glycoprotein) Ib-IX-V complex and GPVI that binds collagen form a unique adheso-signaling complex which acts synergistically to initiate platelet adhesion, activation and integrin dependent aggregation in haemostasis and thrombosis (Gardiner et ah, Journal of Thrombosis and Haemostasis 5: 1530-1537, 2007 incorporated herein in its entirety by reference).
[0008] GPIb is a heterodimeric transmembrane protein. As shown in Figure 1 , the receptor comprises a large GPlba chain disulfide linked to a smaller GPIbp chain. The a-chain comprises an N-terminal ectodomain and a C-terminal cytoplasmic domain. Ectodomain shedding is mediated by metalloproteinases which cleave the ectodomain close (proximal) to the platelet membrane. As shown in Figure 2, ectodomain portions of GPV and GPVI are also shed. For human GPlba the cleavage site is G465V, for human GPV the cleavage site is P494V, and for human GPVI the cleavage site is P243Q (See Table 5). The residual portion of GPlba that is retained after shedding, is associated with the platelet membrane and is disulfide linked to GPIbp. The residual portion comprises a small, unshed ectodomain portion N-terminal to the G465V cleavage site and a cytoplasmic portion domain C-terminal to the G465V cleavage site.
[0009] In a broad embodiment, the present invention enables assays for evaluating the proteolytic status of platelets by assessing the proteolytic status of a shed platelet membrane receptor (referred to herein as "PMR") including one of GPlba, GPV and GPVI. »n
- 4 -
[0010] Some aspects of the method are predicated, in part, upon the determination by the inventors that a measure of the proportion of intact receptor out of the total amount of receptor, whether intact or cleaved, provides an improved and informative assessment of platelet state in healthy and thrombocytopenic subjects. Surprisingly, in one embodiment, a statistically significant reduction in intact GPlba relative to total GPlba, was observed in subjects with idiopathic thrombocytopenia (ITP), antiphospholipid antibody syndrome (APS) and thrombotic thrombocytopenia purpura (TTP), compared to healthy controls. The assay indicated an increased shedding of the GPlba ectodomain of GPlba that was independent of platelet numbers. In contrast, the measured levels of platelet bound GPlba ectodomain alone or the levels of the cytoplasmic domain of GPlba alone were uninformative in this respect. In some embodiments, the proteolytic state of GPlba and at least one of GPV and GPVI is assessed.
[0011] Specifically, and in an exemplary embodiment, the ratio of the measured level of GPlba ectodomain (Glycocalicin) (whose presence on the surface of a platelet indicates that the GPlba protein is intact (not shed or cleaved) ("intact")), to the measured level of the residual C-terminal domain of GPlba (which is physically associated with (bound to) platelets both before and after cleavage and shedding of the ectodomain N- terminal to the G465V cleavage site ("total")) was found to be significantly different between healthy donors and thrombocytopenic subjects. In this embodiment, the thrombocytopenic subjects had a form of thrombocytopenia which is associated with supernormal peripheral platelet destruction. As shown in the Examples, a high ratio or range of ratios, e.g., 0.9-1.0 or 0.85-1.0 (arbitrary values) of intact to total GPlba was found in healthy subjects. A lower ratio or range of ratios, such as 0.8 and below or 0.85 and below, was found in samples subjected to cleavage agents or in subjects with thrombocytopenias characterized by elevated platelet clearance. Thresholds can be determined by the skilled addressee using recognized procedures. For the avoidance of doubt, there are various ways of representing the information generated by the subject assay, whether as a ratio, percentage, proportion of receptors or proportion of platelets, amount, or level of intact to total receptor, or total to intact receptor or, by inference, cleaved to total, or total to cleaved, and any such permutations are mutatis mutandis encompassed.
[0012] Proteolytic state of platelets is determined in the assays as a measure of the proportion of platelets in a sample that have an intact PMR or a measure of this proportion of PMR that is intact out of the total number of detected receptors. Healthy subjects (for example, those subjects not exhibiting thrombocytopenia) have very low levels of cleaved PMR although this increases with the age of the platelets in circulation or storage. Thrombocytopenic subjects have low levels of platelets but if their thrombocytopenia is due to bone marrow deficits then the platelets in circulation or stored are not characterised by supernormal levels of cleaved PMR as determined herein. On the other hand, as determined herein, subjects with increased levels of platelet clearance exhibit increased levels of PMR cleavage. Their proportion of intact to total PMR is reduced to less than 90%, less than 85%, less than 80%, less than 75%, or even less than 70% in some subjects. This proportion is expressed as a test relationship and compared to a control or a corresponding reference relationship to determine the significance of the test value obtained. Typically, diagnostic threshold values are obtained by analysis of large numbers of test and reference subjects and illustrative values are provided herein.
[0013] The present assays provide a significant advance over less informative prior art methods of non-invasively assessing platelets and thrombocytopenia. The present assays permit qualitative and quantitative assessments of proteolytic status of platelets which are independent of the platelet number and independent of GPlba surface levels. This may be used to assess whether a subject has thrombocytopenia as a result of elevated platelet clearance or as a result of decreased platelet production. The present assay provides an early indication of a subject's response to treatment for thrombocytopenia. In a further embodiment, the subject assays facilitate stratification of thrombocytopenia as thrombocytopenia including defects in platelet production and/or thrombocytopenia including altered platelet function such as enhanced platelet activation/destruction/clearance.
[0014] Although the invention has been illustrated using the human GPIba platelet receptor as an exemplary PMR, the skilled person will appreciate that other similar cleaved platelet receptors may be assayed using the same approach to provide useful information concerning the proteolytic cleavage state of platelets. In some embodiments, the proteolytic state of GPIba and at least one of GPV and GPVI is assessed. ITP, APS and TTP are illustrative examples of conditions associated with elevated levels of platelet clearance, however any such condition is encompassed.
10015] Accordingly, in one broad embodiment, the present invention enables an assay for assessing the proteolytic state of test platelets in a biological sample. In some embodiments, the assays comprise detecting the level of intact platelet membrane receptor (PMR) associated with platelets (a), and the level of total (cleaved and uncleaved) PMR (b) associated with platelets in the sample, and comparing a ratio or other measure of the relationship between levels (a) and (b) (a "test relationship") to a corresponding ratio or relationship measure derived from at least one reference biological sample (a "reference relationship") selected from a sample obtained from one or more normal (e.g. healthy) reference subjects ("normal reference relationship") or from one or more reference samples having predetermined levels of intact and total PMR indicating that the reference sample has supernormal levels of cleaved PMR associated with platelets ("supernormal cleavage reference relationship"), wherein the similarity or difference between the test and reference relationships indicates the proteolytic state of platelets in the test sample.
[0016] In an illustrative embodiment, once the test relationship has been established, a comparison between the test relationship and typically a pre-determined reference relationship is used to assess the proteolytic state of the test platelets. Accordingly, in one embodiment, a similarity between the test relationship and the normal reference relationship or a difference between the test relationship and the supernormal cleavage reference relationship indicates the absence of supernormal levels of proteolytic cleavage in test platelets. In another embodiment, a similarity between the test relationship and the supernormal cleavage reference relationship or a difference between the test relationship and the normal reference relationship indicates the presence of supernormal levels of proteolytic cleavage in test platelets.
[0017] In some further embodiments, the assay comprises (i) contacting test platelets with an agent capable of permeabilizing platelets. This permeabilization step is used when the PMR antigen binding molecule that binds the residual domain of the PMR, binds to a cytoplasmic region of the residual domain. In some embodiments, the assays comprise (i) or (ii) contacting test platelets with a PMR antigen-binding molecule that binds to the ectodomain (that extracellular portion of the PMR which is shed from the surface of the platelet after cleavage of the receptor ("shed") close to the platelet membrane) of PMR on the surface of platelets to provide a measure of the level of intact PMR receptor; (iii) contacting test platelets with a PMR antigen-binding molecule that binds to the residual domain (that portion of the receptor retained after ectodomain shedding) of PMR associated with platelets after ectodomain cleavage to provide a measure of the level of total (cleaved and uncleaved) PMR receptor ("total"); (iv) comparing a ratio or other measure of the relationship between the measured level in (ii) and (iii) ("test relationship") to a corresponding relationship measure from at least one reference sample ("reference relationship") selected from a sample obtained from one or more normal (e.g. healthy) reference subjects ("normal reference relationship") or from one or more reference subjects having predetermined measured levels of intact and total PMR indicating that the reference subject has supernormal measured levels of cleaved PMR associated with platelets ("supernormal cleavage reference relationship"), wherein the similarity or difference between the test and reference relationships indicates the proteolytic state of platelets in the test sample. In some embodiments, the antigen- binding molecule that binds to the residual domain, binds to the cytoplasmic domain of PMR. In some embodiments, platelets are permeabilized with, for example, a mild detergent to allow intracellular access of antibodies to the cytoplasmic domain, if required. In some embodiments, the antigen binding molecule is/are labeled with a detectable substance.
[0018] There are various approaches to assessing the test and reference relationship values. In some embodiments, a similarity between the test relationship and the normal reference relationship or a difference between the test relationship and the supernormal cleavage reference relationship indicates the absence of supernormal levels of proteolytic cleavage in test platelets, and wherein a similarity between the test relationship and the supernormal cleavage reference relationship or a difference between the test relationship and the normal reference relationship indicate the presence of supernormal levels of proteolytic cleavage in test platelets.
[0019] In some embodiments, the test platelets are stored platelets, such as platelets in stored blood or stored platelet concentrates.
[0020] In some embodiments, the biological sample is whole blood. In other embodiments, blood is fractioned or processed to remove one or more cellular components other than platelets.
[0021] In some embodiments, the assay further comprises contacting platelets with an RNA-staining molecule and measuring the level of RNA in test platelets as an indication of platelet age.
[0022] In one particular embodiment, the PMR receptor is GPIba. For human GPIba the ectodomain is N-terminal to G465V or the equivalent amino acid in a homolog of GPIba. The residual domain of GPIba is C-terminal to G465V or the equivalent amino acid in a GPIba homolog.
[0023] In another embodiment, the PMR receptor is GPV. For GPV, the ectodomain is N-terminal to P494V or the equivalent amino acid in a GPV homolog. The residual domain of GPV is C-terminal to P494V or the equivalent amino acid in a GPVI homolog.
[0024] In another embodiment, the PMR receptor is GPVI. For GPVI, the ectodomain is N-terminal to P243Q or the equivalent amino acid in a GPVI homolog. The residual domain of GPVI is C-terminal to P243Q or the equivalent amino acid in a GPVl homolog.
(0025] In another aspect, the subject assay is provided for use in the diagnosis, prognosis, monitoring, treatment or management of conditions associated with thrombocytopenia or for use in the management of stored blood products.
[0026] In an exemplified embodiment, the assay is suitable for and employs flow cytometry as the detection system. In these embodiments, the antigen binding molecule that binds to the ectodomain of PMR on the surface of platelets is labelled with a first fluorescent or other detectable molecule, and the antigen binding molecule that binds to the residual domain of PMR receptor associated with platelets after receptor cleavage is labelled with a second fluorescent or other detectable molecule. In accordance with this embodiment, test platelets are subjected to flow cytometry to detect and provide a measure of the level of intact PMR receptor or proportion of platelets with intact PMR receptor ("intact") and to detect and provide a measure of the level of total (cleaved and uncleaved) PMR receptor or the proportion of platelets with cleaved and uncleaved PMR receptor ("total").
10027] Accordingly, in one embodiment, the present invention provides a flow cytometric assay for assessing the proteolytic state of test platelets in a biological sample, the assay comprising (i) contacting test platelets with an agent capable of permeabilizing platelets, (ii) contacting test platelets with a PMR antigen-binding molecule that binds to the ectodomain of PMR on the surface of platelets wherein the antigen binding molecule is labelled with a first fluorescent or other detectable molecule to provide a measure of the level of "intact" PMR receptor; (iii) contacting test platelets with a PMR antigen- binding molecule that binds to the residual domain of PMR associated with platelets after ectodomain cleavage and wherein the antigen-binding molecule is labelled with a second fluorescent or other detectable molecule to provide a measure of the level of total (cleaved and uncleaved) PMR receptors ("total"); (iv) subjecting labelled test platelets to >l
- 10 - flow cytometry and (v) comparing a measure of the relationship between the detected levels in (ii) and (iii) ("test relationship") to a corresponding measure of the relationship between the detected levels in (ii) and (iii) from at least one reference sample ("reference relationship") selected from a sample obtained from one or more normal (e.g. healthy or non-thrombocytopenic) reference subjects ("normal reference relationship") or from one or more reference subjects having predetermined detected levels of intact and total PMR indicating that the reference subject has supernormal measured levels of cleaved PMR associated with platelets ("supernormal cleavage reference relationship"), wherein the similarity or difference between the test and reference relationships indicates the proteolytic state of platelets in the test sample.
[0028] In some embodiments, wherein the first and second fluorescent or other detectable molecules are different. Where more than one PMR is assessed, each PMR may have one or more unique detectable molecules.
[0029] In some embodiments, the assays further comprise contacting platelets with an RNA-staining fluorescent molecule and measuring the level of RNA in test platelets.
(0030] In other embodiments, the test and reference relationships are compared for two or more PMR.
[0031] There are a range of other detection systems known in the art which may be employed and all such detection systems are encompassed by the present disclosure.
[0032] The antigen binding molecules and/or assays of the present invention may be provided in kit format. In one embodiment, the invention provides a kit for assessing the proteolytic state of test platelets in a biological sample, the kit comprising: (i) a PMR antigen-binding molecule that binds to the ectodomain of PMR, wherein the antigen- binding molecule is either immobilized (bound) to one or more test portions and/or contained within a conjugate portion; and/or (ii) a PMR antigen-binding molecule that binds to the residual domain of PMR associated with platelets after ectodomain cleavage, wherein the antigen-binding molecule is either immobilized (bound) to one or more test portions and/or contained within a conjugate portion and (iii) instructions for using the device for assessing the proteolytic status of platelets.
(0033] In some embodiment, the PMR receptor is GPIba.
[0034] In a particular embodiment, the PMR receptor is GPV.
[0035] In a particular embodiment, the PMR receptor is GPVI.
[0036] In some embodiments, the GPIba is assessed together with one or two of GPV and GPVI.
[0037] In another aspect the invention provides a kit as described herein for use in the diagnosis, prognosis, monitoring, treatment or management of conditions associated with thrombocytopenia or for use in the management of stored blood products.
[0038] In some embodiments, the PMR is GPV.
[0039] In a particular embodiment, the PMR is GPVI.
[0040] In some embodiments, the PMR is GPIba and the assay further comprises each step wherein the PMR is GPV and/or further comprises each step wherein the PMR is GPVI.
[0041] In some embodiments, the assay comprises detecting (a) and (b) to establish a test relationship for GPIba, GPV and GPVI and determining a reference relationship for GPIba, GPV and GPVI.
[0042] In another embodiment, the present invention contemplates an antigen- binding molecule that is immuno-interactive with the residual domain of GPIba associated with the platelet after proteolytic cleavage and shedding of the ectodomain. In some embodiments, the invention provides and an antigen-binding molecule that is immuno-interactive with the ectodomain or residual domain of PMR for use in the assays of the present invention. In a related aspect, the present invention provides a solid or semi-solid support comprising at least one antigen-binding molecule that specifically binds to the ectodomain or residual domain of one or more PMR as, broadly described herein, immobilized thereon. In some embodiments, the solid or semi-solid assays comprise a spatial array of antigen-binding molecule immobilized thereon suitable for detecting ratios of intact:total PMR.
[0043] In one embodiment, the assays of the present invention distinguish between forms of thrombocytopenia characterized by platelet destruction such as immune mediated thrombocytopenias, where the ratio or value (test relationship) of intact to total GPIba in circulating platelets indicates whether thrombocytopenia results substantially from platelet destruction or substantially from reduced platelet production. Accordingly, in one embodiment, the present assays are useful for stratifying subjects in distinguishing between (i) thrombocytopenia associated with increased clearance in particular immune mediated thrombocytopenias, and (ii) bone-marrow deficiencies resulting in thrombocytopenia, and thus in the management, treatment or prophylaxis of thrombocytopenia.
[0044] In some embodiments, the present invention relates to a method of treatment or prophylaxis of a subject comprising assessing a test sample from the subject for platelet state as described herein and then providing at least one therapy to the subject or conducting further tests and therapies depending upon the results of the assay. Representative examples of therapies include steroid, anti-inflammatory or immunoglobulin therapy, platelet transfusion, plasma exchange, as appropriate.
[0045] In some embodiments, assays for differentially treating a population with respect to thrombocytopenia are provided. In some embodiments, the assays comprise (i) detecting (a or ta) the level of an intact PMR and detecting (b or tb) the level of total (cleaved or uncleaved) PMR associated with platelets in a test biological sample. In some embodiments, the methods comprise (ii) comparing a measure of the relationship between levels (a) and (b) (the "test" relationship) to a control. In an illustrative example, the test relationship is ta tb. In an illustrative embodiment, the PMR is GPIba. In some embodiments, the methods further comprise comparing a measure of the relationship between levels (a) and (b) from the test sample to a corresponding measure of the relationship between levels (a or ra) and (b or rb) derived from a reference biological sample (the "reference" relationship e.g., ra/rb). In some embodiments, subjects in the cW PonbrocciormjKan^DOC-i js Mij
- 13 - - population are stratified with respect to the proteolytic state of their platelets determined using the test relationship. In some embodiments, subjects receive different treatment regimes and/or monitoring regimes based upon the proteolytic state of the platelets determined using the test relationship. In an illustrative example, subjects identified as having an elevated level of PMR cleavage/shedding may receive an appropriate steroid therapy.
[0046] In some embodiments, step (ii) comprises comparing a measure of the relationship between levels (a) and (b) ("test relationship") to a corresponding relationship measure derived from at least one reference biological sample ("reference relationship") selected from a sample obtained from one or more normal (e.g. healthy) reference subjects ("normal reference relationship") or from one or more reference samples having predetermined measured levels of intact and total PMR indicating that the reference subject has supernormal measured levels of cleaved PMR associated with platelets ("supernormal cleavage reference relationship"), wherein the similarity or difference between the test relationship and the reference relationship indicates the proteolytic state of platelets in the test sample.
[0047] In some embodiments, the assay comprises (i) contacting test platelets with an agent capable of permeabilizing platelets, (ii) contacting test platelets with a PMR antigen-binding molecule that binds to the ectodomain of PMR on the surface of platelets to provide a measure of the level of intact PMR; (iii) contacting test platelets with a PMR antigen-binding molecule that binds to the residual domain of PMR associated with platelets after ectodomain cleavage to provide a measure of the level of total (cleaved and uncleaved) PMR ("total"); (iv) comparing a measure of the relationship between the measured levels in (ii) and (iii) ("test relationship") to a corresponding relationship measure from at least one reference sample ("reference relationship") selected from a sample obtained from one or more normal (e.g. healthy) reference subjects ("normal reference relationship") or from one or more reference subjects having predetermined measured levels of intact and total PMR indicating that the reference subject has supernormal measured levels of cleaved PMR associated with platelets ("supernormal cleavage reference relationship"), wherein the similarity or difference between the test and reference relationships indicates the proteolytic state of platelets in the test sample.
[0048] In some embodiments, a similarity between the test relationship and the normal reference relationship or a difference between the test relationship and the supernormal cleavage reference relationship indicates the absence of supernormal levels of proteolytic cleavage in test platelets, and wherein a similarity between the test relationship and the supernormal cleavage reference relationship or a difference between the test relationship and the normal reference relationship indicate the presence of supernormal levels of proteolytic cleavage in test platelets.
[0049] In some embodiments, the biological sample is whole blood.
[0050] In some embodiments, the assays further comprise contacting platelets with an RNA-staining molecule and measuring the level of RNA in test platelets.
[0051] In an illustrative embodiment the PMR is GPIba.
[0052] In some embodiments, the PMR is GPIba and the assay further comprises steps wherein the PMR is GPV and/or wherein the PMR is GPVI.
[0053] In further embodiments, the antigen binding molecule that binds to the ectodomain of PMR on the surface of platelets is labelled with a first fluorescent or other detectable molecule, wherein the antigen binding molecule that binds to the residual domain of PMR associated with platelets after receptor cleavage is labelled with a second fluorescent or other detectable molecule, and wherein test platelets are subjected to flow cytometry to provide a measure of the level of intact PMR or proportion of platelets with intact PMR ("intact") and a measure of the level of total (cleaved and uncleaved) PMR or the proportion of platelets with cleaved and uncleaved PMR ("total").
[0054] In an illustrative example, subjects identified as having an elevated bend of PMR cleavage may receive an appropriate steroid therapy.
[0055] In an illustrative embodiment, the invention enables an assay to monitor the response of a thrombocytopenic subject to therapy such as steroid or antiinflammatory therapies. As shown in the Examples, the test relationship, in this case GPIba intac total ratio provided an early marker of platelet status and platelet recovery during treatment. Accordingly, the subject assays are useful for indicating whether further similar treatment is warranted or that a different treatment such as platelet transfusion is warranted.
[0056] Thus, in some embodiments, the assays facilitate the identification of appropriate treatment protocols and are also instructive in pharmacotranslational studies and in the clinical management of patients.
[0057] In other embodiments, the present assay may be used to guide drug discovery and testing for agents that modulate platelet survival, production or clearance, or platelet function in a subject or blood product, as appropriate.
BRIEF DESCRIPTION OF THE DRAWINGS
[0058] Figure 1 is a pictorial representation of a flow cytometry assay to assess the level of intact GPIba (red fluorochrome) and total GPIba (green fluorochrome) in a. circulating platelet population. The ratio of red to green fluorescence reflects the proteolytic status of GPIba, and therefore platelet age and extent of platelet activation and destruction.
[0059] Figure 2 is a pictorial representation of platelet membrane receptors GPIba, GPV and GPVI which undergo shedding in vivo. The cleavage sites for each shed receptor have been identified in humans and antibodies or other antigen binding molecules are routinely generated against shed ectodomain or residual (cytoplasmic) domains (see Shen et al, Blood 95: 903-910, 2000; Gardiner et al, 2007 (supra)).
[0060] Figure 3 is a graphical representation of technical data showing that GPIba intac total ratio is a marker for ITP thrombocytopenia and further provides an early marker for platelet recovery during steroid or other therapy.
[0061] Figure 4 is a graphical representation of data showing the temporal relationship between GPIba index (Intact/Total) and platelet count in ITP-C subject shown to be responsive to steroids after one month.
(0062] Figure 5 is a graphical representation of data showing the temporal relationship between GPIba index (Intact/Total) and platelet count in ITP-X subject non responsive to steroids, treated with azathioprine at arrow.
[0063] Figure 6 is a graphical representation of data showing the temporal relationship between GPIba index (Intact/Total) and platelet count in ITP-V subject treated with thrombopoietin (TPO) mimic, Romip!ostim.
[0064] Figure 7 is a graphical representation of data showing the temporal relationship between GPIba index (IntactAOtal) and platelet count in ITP-J subject treated with steroids, then the TPO mimic Romiplostim at arrow.
DETAILED DESCRIPTION OF THE INVENTION
[0065] Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by those of ordinary skill in the art to which the invention belongs. Although any methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, preferred methods and materials are described. For the purposes of the present invention, the following terms are defined below.
[0066] The articles "a" and "an" are used herein to refer to one or to more than one (i.e. to at least one) of the grammatical object of the article. By way of example, "an element" means one element or more than one element.
[0067] By "antigen-binding molecule" is meant a molecule that has binding affinity for a target antigen. As used herein, the target antigen is a PMR, including the shed ectodomain portion thereof or the residual (including cytoplasmic) portion thereof as described elsewhere herein. It will be understood that this term extends to immunoglobulins, immunoglobulin fragments and non-immunoglobulin derived protein or protein frameworks that exhibit antigen-binding activity. As used herein, the term e
- 17 -
"binds specifically," "specifically immuno-interactive" and the like when referring to an antigen-binding molecule refers to a binding reaction which is determinative of the presence of an antigen in the presence of a heterogeneous population of proteins and other biologies. Thus, under designated assay conditions, the specified antigen-binding molecules bind to a particular antigen and do not bind in a significant amount to other proteins or antigens present in the sample. Specific binding to an antigen under such conditions may require a antigen-binding molecule that is selected for its specificity for a particular antigen. For example, antigen-binding molecules can be raised to a selected protein antigen, which bind to that antigen but not to other proteins present in a sample. A variety of immunoassay formats may be used to select antigen-binding molecules specifically immuno-interactive with a particular protein. For example, solid-phase ELISA immunoassays are routinely used to select monoclonal antibodies specifically immuno-interactive with a protein. See Harlow and Lane, "Antibodies, A Laboratory Manual", Cold Spring Harbor Publications, New York, 1988 for a description of immunoassay formats and conditions that can be used to determine specific immunoreactivity. Reference herein to "immuno-interactive" includes reference to any interaction, reaction, or other form of association between molecules and in particular where one of the molecules is, or mimics, a component of the immune system.
[0068] The term "biological sample" or "sample" as used herein refers to a sample comprising platelets that may be extracted, substantially untreated (anticoagulant may be present), diluted or concentrated or derived from a subject. The sample includes a biological fluid containing platelets such as, without limitation, whole blood or fraction thereof including platelets, purified or concentrated platelets.
[0069] Samples include blood or blood fractions from subjects who are thrombocytopenic and therefore have a low number of platelets in the blood or fraction. As used herein, the components of the test or reference samples including platelets, and detection marker-antigen complexes and components thereof may be moved relative to each other by capillary flow or diffusion through chromatographic material. The material *n
- 18 - may be functionalized or coated to permit, for example, cross-linking of reagents. Methods for immobilizing antibodies or other binding agents to solid supports are well known in the art and are described for example in US Patent No. 4, 168, 146, Cautrecases, J. Biol. Chem. 245: 3059, 1970. Materials contemplated for use herein include inorganic materials such as silica, glass, polymeric material such as cellulose, starch, dextrose, agarose, special fibrous paper (filter/chromatography paper) nitrocellulose, cellulose acetate, PVC, polyacrylamide, polysaccharide, polyacrylate, polyethylensulphonate, polyethylene and the like. "Chromatographically active" components are simply those capable of flow through all or part of the immunochromatographic device. Chromatographic assays are particularly sophisticated and a large number of different formats are available which are tailored to the particular reagents and instruments and the outcomes required in any particular investigation. "Rapid" assays, using chromatographic principles, are tailored for accuracy, speed and ease of use. Immunoassay or enzyme- based chromatographic assays are particularly preferred and these are described in Wild D, "The Immunoassay Handbook", Nature Publishing Group, 2001 and by reference to U.S. Patent Nos. 4,016,043; 4,590,159; 5,266,497; 4,962,023; 5,714,389; 5,877,028, 5,922,537, 6, 168,956 and 6,548,309, 6, 180,417, and 5,266,497 incorporated herein and information disclosed by references cited therein. Various modifications of immunochromatographic methods are described in Published U.S. Patent Application Nos. 20010006821 , 20040087036 and 20040214347 which are incorporated herein in their entirety. Immunogold filtration methods for multiple analyte analyses are described in Published US Patent Application No. 20030165970 incorporated herein.
[0070] Throughout this specification, unless the context requires otherwise, the word "comprise," and variations such as "comprises" and "comprising" will be understood to imply the inclusion of a stated step or element or group of steps or elements but not the exclusion of any other step or element or group of steps or elements. Thus, use of the term "comprising" and the like indicates that the listed elements are required or mandatory, but that other elements are optional and may or may not be present. By "consisting of is meant including, and limited to, whatever follows the phrase "consisting of. Thus, the phrase "consisting of indicates that the listed elements are required or mandatory, and that no other elements may be present. By "consisting essentially of is meant including any elements listed after the phrase, and limited to other elements that do not interfere with or contribute to the activity or action specified in the disclosure for the listed elements. Thus, the phrase "consisting essentially of indicates that the listed elements are required or mandatory, but that other elements are optional and may or may not be present depending upon whether or not they affect the activity or action of the listed elements.
[0071] Reference to a "control" broadly includes data that the skilled person would use to facilitate the accurate interpretation of technical data.
[0072] In some embodiments, a "difference" between test and reference values includes at least about 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85% or 90%, or even an at least about 100%, 200%, 300%, 400%, 500%, 600%, 700%, 800%, 900% or 1000% increase or decrease between values.
[0073] In some embodiments, a "similarity" between test and reference values includes no more than about 20%, 18%, 16%, 14%, 12%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1 % or 0.1 % difference between values.
[0074] In an illustrative example, the ratio of intact:total GPlba (or total to intact GPlba) from test platelets or a test subject are compared to reference ratios(s) in one or more cohorts (populations/groups) of reference subjects whose platelet status is established (pre-determined). In some assays, reference subjects include normal subjects with normal platelets or thrombocytopenic subjects with functionally or proteolytically normal platelets. In some embodiments, the reference sample may be a sample from the test subject taken at an earlier time point. Thus, a temporal change in test and reference ratios or relationship values can be used to monitor changes in platelet state.
[0075] In some embodiments, a reference subject is a group of reference subjects. The measured level or ratio in a reference subject group may be a mean value or a preselected level, threshold or range of levels or ratios that define, characterize or distinguish a particular group. In some embodiments, thresholds may be selected- that provide an acceptable ability to distinguish between platelet states. In some embodiments, a threshold or range is selected, above which (or below which) the test is considered to be "positive" and below which the test is considered to be "negative".
[0076] In some embodiments, ratio thresholds are selected to discriminate between subjects (such as between thrombocytopenic subjects) with at least about 60%, 65%, or 70% accuracy.
[0077] Reference herein to "derived from" means that the sample is obtained from a particular source but not necessarily directly from that source.
[0078] The reference herein to "platelet proteolytic state", "platelet state" the "state of platelets" or the "state of test platelets" and the like includes proteolytic or shedding status (loss or otherwise of PMR ectodomain N-terminal to ectodomain cleavage site) which is associated with the risk or rate of platelet clearance, platelet activation or functional status (e.g., in relation to thrombus formation, thrombocytic activity, or wound healing capability). In some embodiments, the state of platelets includes an indication of the proportion of platelets having shed PMR ectodomains or the surface density of intact PMR. When combined with repeat or serial testing, the assay also provides and the platelet state includes an indication of the rate of receptor shedding or rate of change of receptor shedding in test platelets from a test subject, or in stored platelets.
[0079] As used herein reference to "detecting", "evaluating", "enumerating", "measuring" includes assessing the level of "intact" and "total" PMR or more particularly, the ratio of "intact" and "total" PMR by assessing the reporter signal from a detectable marker directly or indirectly attached to the "intact" PMR binding agent (antibody or fragment) or "total" PMR-binding agent (antibody or fragment thereof). Assessment may be by instrument or by visual comparison, typically with pre-determined controls.
[0080] By "detection marker" or "reporter molecule" "detection substance" is meant a molecule or particle which, by its chemical nature, provides an analytically identifiable signal which allows the detection and quantification of antigen bound antibody detection may be qualitative or quantitative. By qualitative is meant for example, that the user may observe a similarity or difference between test and reference ratios in order to assess the outcome of the test/method. Antigen binding molecules may be labeled with the same or different reporter molecules. Fluorophores are particularly useful (see Table 6). Other labels include luminescence and phosphorescence as well as infrared dyes. As will be well recognized, a wide variety of different reporter systems employing detectable molecules (substances) are available. Those allowing rapid visual detection are clearly the most useful in the context of point of care diagnostics.
[0081] The term "normal" is used to broadly refer to the phenotype of platelet proteolytic state that is characteristic of most of the members of the species occurring naturally. However, as thrombocytopenia caused by loss of platelet production involves platelets with substantially non-supernormal levels of proteolytic cleavage, platelets from such subjects are also considered normal and provide an example of normal platelets in accordance with the · present invention. "Supernormal" merely refers to more than normal.
[0082] "Stratification" or "stratify" includes identification, diagnosis, clarification, monitoring and/or determination of thrombocytopenia by evaluating the state of platelets in a subject. The process involves identifying an increased or supra normal level of platelet membrane receptor shedding or decreased platelet shedding or normal levels of platelet shedding of platelets in a test subject. Increased shedding is indicative inter alia that a subject relative to a normal subject has increased platelet clearance such as is found in immune mediated thrombocytopenia.
[0083] In some embodiments, decreased shedding or improved platelet status is indicated by an increased PMR intactrtotal value which is at least 10%, 1 1%, 12%, 13%, 14%, 15%, 16%, 17%, 18%, 19%, 20%, 30%, 40%, 50%, 60%, 70%, 80% or 90% more than pre-treatment values. In some embodiments, subjects are monitored and treatment is maintained until the PMR. intact to total percentage value reaches at least 99%, 98%, 97%, 96%, 95%, 94%, 93%, 92%, 91 % or 90%, of the level from a corresponding reference percentage from a normal control subject. In some embodiments, decreased shedding is indicated by a PMR intact:total value of that varies from a corresponding value or a low level of platelet shedding from a normal reference sample by no more than about 20, 18, 16, 14, 12, 10, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1% or 0.1%. Other assessment methods will be readily apparent to the skilled addressee. In some embodiments, the referenced relationship value is 1 or 1 : 1 or 100%.
[0084] The terms "subject" or "individual" or "patient", used interchangeably herein, refer to any subject, particularly a vertebrate subject, and even more particularly a mammalian subject, for whom therapy or prophylaxis is desired. Suitable vertebrate animals that fall within the scope of the invention include, but are not restricted to, primates, livestock animals (e.g., sheep, cows, horses, donkeys, pigs), laboratory test animals (e.g., rabbits, mice, rats, guinea pigs, hamsters), companion animals (e.g., cats, dogs) and captive wild animals (e.g., foxes, deer, dingoes) provided the subject has essentially anuclear platelets. The aforementioned terms do not imply that symptoms are present.
[0085] The present invention contemplates the use of antigen-binding molecules that are specifically immuno-interactive with different domains of a PMR polypeptide for assessing platelet state in a test sample. In some embodiment, the antigen-binding molecule is a whole polyclonal antibody. Such antibodies may be prepared, for example, by injecting the GPIb domain of interest (antigen) or peptide portions thereof into a production species, which may include mice or rabbits, to obtain polyclonal antisera. Methods of producing polyclonal antibodies are well known to those skilled in the art. Exemplary protocols which may be used are described for example in Coligan et al, "Current Protocols in Immunology", John Wiley & Sons, Inc, 1991 and Ausubel et al, Current Protocols in Molecular Biology John Wiley & Sons Inc, in particular Section III of Chapter 1 1, 1994-1998. [0086] In lieu of polyclonal antisera obtained in a production species, monoclonal antibodies may be produced using the standard method as described, for example, by Kohler and Milstein, Nature 256: 495-497, 1975, or by more recent modifications thereof as described, for example, in Coligan et ah, 1991 (supra) by immortalizing spleen or other antibody producing cells derived from a production species which has been inoculated with one or more antigens.
[0087] The invention also contemplates as , antigen-binding molecules Fv, Fab, Fab' and F(ab')2 immunoglobulin fragments. Alternatively, the antigen-binding molecule may comprise a synthetic stabilized Fv fragment. Exemplary fragments of this type include single chain Fv fragments (sFv, frequently termed scFv) in which a peptide linker is used to bridge the N terminus or C terminus of a VH domain with the C terminus or N- terminus, respectively, of a Vf domain. ScFv lack all constant parts of whole antibodies and are not able to activate complement. ScFvs may be prepared, for example, in accordance with methods outlined in Kreber et ah, J. Immunol. Methods, 201(1): 35-55. Alternatively, they may be prepared by methods described in U.S. Patent No 5,091,513, European Patent No 239,400 or the articles by Winter and Milstein, Nature 349: 293, 1991 and Pluckthun et ah, In Antibody engineering: A practical approach, 203-252, 1996. In another embodiment, the synthetic stabilized Fv fragment comprises a disulfide stabilized Fv (dsFv) in which cysteine residues are introduced into the Vw and VL domains such that in the fully folded Fv molecule the two residues will form a disulfide bond between them. Suitable methods of producing dsFv are described for example in (Glockscuther et ah Biochem. 29: 1363-1367; Reiter et ah, J. Biol. Chem. 269: 18327- 18331 , 1994; Reiter et ah, Biochem. 33: 5451-5459, 1994; Reiter et ah, Cancer Res. 54: 2714-2718, 1994; Webber et ah, Moh Immunol. 32: 249-258, 1995.
[0088] Phage display and combinatorial methods for generating antigen-binding molecules are known in the art (as described in, e.g., Huse et ah, Science 246: 1275-1281 , 1989; Griffths et ah, EMBO J 12: 725-734, 1993; Hawkins et ah, J Mol Biol 226: 889- 896, 1992; Clackson et ah, Nature 352: 624-628, 1991 ; Gram et ah, PNAS 89: 3576- 3580, 1992; Garrad et al, Bio/Technology 9: 1373-1377, 1991 ; Hoogenboom et al, Nuc Acid Res 19: 4133-4137, 1991 ; and Barbas et al, PNAS 88: 7978-7982, 1991).
[0089] Detection of antigen binding molecules can be facilitated by coupling (e.g., physically linking) them to a detectable substance (i.e., antibody labeling). Examples of detectable substances include various enzymes, prosthetic groups, fluorescent materials, luminescent materials, bioluminescent materials, and radioactive materials. Examples of suitable enzymes include horseradish peroxidase, alkaline phosphatase, β-galactosidase, or acetylcholinesterase; examples of suitable prosthetic group complexes include streptavidin/biotin and avidin biotin; examples of suitable fluorescent materials include umbelliferone, fluorescein, fluorescein isothiocyanate, rhodamine, dichlorotriazinylamine fluorescein, dansyl chloride or phycoerythrin (a list of suitable fluorophores is provided in Table 6); an example of a luminescent material includes luminol; examples of bioluminescent materials include luciferase, luciferin, and aequorin, and examples of suitable radioactive material include l25l, , 3 II, 35S or 3H. The label may be selected from a group including a chromogen, a catalyst, an enzyme, a fluorophore, a chemiluminescent molecule, a lanthanide ion such as Europium (Eu34), a radioisotope and a direct visual label. In the case of a direct visual label, use may be made, of a colloidal metallic or non-metallic particle, a dye particle, an enzyme or a substrate, an organic polymer, a latex particle, a liposome, or other vesicle containing a signal producing substance and the like.
[0090] Monoclonal and/or polyclonal antibodies to the ectodomain or residual domain of GPIba, GPVI and GPV are known (Gardiner et al, 2007 (supra); Shen et al., 2000 (supra), incorporated herein , their entirety by reference). Illustrative antibodies binding to the intact GPIba ectodomain include the CDR sequences underlined in Table 4.
[0091] A large number of enzymes useful as labels is disclosed in United States Patent Specifications U.S. 4,366,241 , U.S. 4,843,000, and U.S. 4,849,338. Enzyme labels useful in the present invention include alkaline phosphatase, horseradish peroxidase, luciferase, β-galactosidase, glucose oxidase, lysozyme, malate dehydrogenase and the like. The enzyme label may be used alone or in combination with a second enzyme in solution.
10092] Consistent with the present invention, the proteolytic state of platelets and levels of PMR domains can be assayed using any suitable method known in the art. Antibody-based techniques include immunohistological and immunohistochemical methods for measuring the level of a protein of interest in a tissue sample. Specific recognition may be provided, for example, by a primary antibody (polyclonal or monoclonal) and a secondary detection system is used to detect presence (or binding) of the primary antibody. Detectable labels can be conjugated to the secondary antibody, such as a fluorescent label, a radiolabel, or an enzyme (e.g., alkaline phosphatase, horseradish peroxidase) which produces a quantifiable, e.g., colored, product. In another suitable method, the primary antibody itself can be detectably labeled. As a result, immunohistological labeling of a tissue section is provided. In some embodiments, a protein extract is produced from a biological sample (e.g., tissue, cells) for analysis. Such an extract (e.g., a detergent extract) can be subjected to western-blot or dot/slot assay of the level of the protein of interest, using routine immunoblotting methods (Jalkanen et al, J. Cell. Biol. 101: 976-985, 1985; Jalkanen et al., J, Cell. Biol. 105: 3087-3096, 1987).
[0093] Other useful antibody-based methods include immunoassays, such as the enzyme-linked immunosorbent assay (ELISA) and the radioimmunoassay (RIA). For example, an antigen-specific monoclonal antibody, can be used both as an immunoadsorbent and as an enzyme-labeled probe. The amount of such protein present in a sample can be calculated by reference to the amount present in a standard preparation using a linear regression computer algorithm (see Lacobilli et al., Breast Cancer Research and Treatment 11: 19-30, 1988).
[0094] Flow cytometry using commercial or microfabricated flow cytometry without limitation to any particular flow cytometer and/or biosensor methods are also contemplated. Different assays have different requirements for agents, washing steps, incubation periods and the like and these are known to the skilled addressee. Although the invention has been illustrated using a flow cytometry based format, the broader aspects of the invention are in no way limited to this format. Fluorescence based detection systems are particularly suitable for flow cytometric analysis. Other methods of analyzing fluorescence emissions are contemplated such as 2-photon and 3-photon time resolved fluorescence spectrometry, fluorescence lifetime imaging and fluorescence resonance energy transfer as known in the art. Any optical means for identifying labels may be used. Electromagnetic scattering from light and X-rays may be employed.
[0095] Accordingly, in one illustrative embodiment, the assay is a flow cytometry based assay. Flow cytometry is a powerful tool for characterizing and enumerating cells. The flow cytometer detects and counts individual platelets passing in a stream through a laser beam. By examining a large number of cells, flow cytometry can provide quantitative data on the percentage of cells bearing different molecules. In accordance with the present assay, platelets are contacted with a first binding agent that binds to the residual do main of the PMR receptor and a second binding agent that binds to the ectodomain of the PMR. These agents are conveniently labelled with different detection markers such as fluorescent or chemiluminescent dyes. In other embodiments, one or more further binding agents that bind to the receptor domain or to a binding agent directly or indirectly bound to the receptor domain may be employed. In these cases, the second or subsequent binding agent is typically labelled with a detection or detectable marker to facilitate evaluating the level of the two forms of the receptor (intact or cleaved) associated with test platelets in the test sample.
[0096] The suspended mixture of labelled cells is then forced through an aperture, creating a fine stream of liquid containing cells spaced singly at intervals. As each cell passes through a laser beam it scatters the laser light, and any dye molecules bound to the cell will be excited and will fluoresce. Sensitive photomultiplier tubes detect both the scattered light, which gives information on the size and granularity of the cell, and the fluorescence emissions, which give information on the binding of the labelled binding agents and hence on the characteristics of each platelet in the population. Where two or more binding agents are used, each coupled to a different fluorescent dye, then the data may be displayed in the form of a two-dimensional scatter diagram or as a contour diagram, where the fluorescence of one dye-labelled binding agent is plotted against that of a second, with the result that a population of cells labelling with one binding agent can be further subdivided on the basis of its reactivity with another binding agent.
[0097] Immunoassays are another particularly useful format of assay for the present invention. A wide range of immunoassay techniques are available, such as those described in Wild D, 2001 (supra). Reference may also be made to Chapter 1 1 of Ausubel (Ed), "Current Protocols in Molecular Biology", 5th Edition, John Wiley & Sons, Inc, NY, 2002. For example, the enzyme-linked immunosorbent assay (ELISA) and radio-immunoassay (RIA) are routinely used in laboratories. Arrays and high throughput screening methods are also employed. These methods generally require a high level of skill in laboratory techniques.
[0098] A wide range of immunoassay techniques are available that providing qualitative or quantitative results. These include both single-site and two-site or "sandwich" assays of the non-competitive types, as well as in the traditional competitive binding assays. Sandwich assays are among the most useful and commonly used assays and are favored for use in the present invention. A number of variations of the sandwich assay technique exist, and all are intended to be encompassed by the present invention. Briefly, in a typical forward assay, an antibody is immobilized on a solid or semi-solid substrate and the sample to be tested brought into contact with the bound molecule. After a suitable period of incubation, for a period of time sufficient to allow formation of an antibody-antigen complex, a second antibody specific to the antigen, labelled with a detection molecule capable of producing a detectable signal is then added and incubated, allowing time sufficient for the formation of another complex of antibody-antigen- labelled antibody. Any unreacted material is washed away, and the presence of the antigen is determined by observation of a signal produced by the detectable marker (reporter molecule). The results may be qualitative or quantitative, by simple observation of the visible signal, or may be quantitated by comparing with a control sample containing known amounts of antigen. Variations on the forward assay include a simultaneous assay, in which both sample and labelled antibody are added simultaneously to the bound antibody.
[0099] In a typical forward sandwich assay, a first antibody having specificity for the PMR domain antigen is either covalently or passively bound to a solid or semi-solid support. The support is typically glass or a polymer, the most commonly used polymers being nitrocellulose, cellulose, polyacrylamide, nylon, polystyrene, polyvinyl chloride, polypropylene or mixture or derivatives of these. The solid supports may be in the form of tubes, beads, discs or microplates, or any other surface suitable for conducting an immunoassay. The binding processes are well-known in the art and generally consist of cross-linking covalently binding or physically adsorbing the polymer-antibody complex to the solid surface which is then washed in preparation for the test sample.
[0100] An aliquot of the sample to be tested is then added to the solid phase complex and incubated for a period of time sufficient (e.g. 2-40 minutes or overnight if more convenient) and under suitable conditions (e.g. from room temperature to about 37°C including 25°C) to allow binding of any subunit present in the antibody. Following the incubation period, the antibody subunit solid phase is washed and incubated with a second antibody specific for a portion of the antigen. The second antibody is linked to a detectable marker which is used to indicate the binding of the second antibody to the antigen. An alternative method involves immobilizing the target molecules in the biological sample and then exposing the immobilized target to specific antibody which may or may not be labelled with a detectable marker.
[0101] Depending on the amount of target and the strength of the signal from the detectable marker, a bound target may be detectable by direct labelling with the antibody. Alternatively, a second labelled antibody, specific to the first antibody is exposed to the target-first antibody complex to form a target-first antibody-second antibody tertiary complex. The complex is detected by the signal emitted by the reporter molecule. Biosensor devices may be employed to detect and report on antigen-antibody interactions, such as those between the ectodomain of GPIb or GPV or GPVI and an antibody or other binding agent that binds to this domain, and the residual domain of GPIba, GPV or GPVI and an antibody or antigen binding fragment or other binding agent which binds to this domain. Biosensor devices are described, for example, in U.S. Patent Publication No. 20100006452.
[0102] In other embodiments, the method is a liquid phase method. In one example of a liquid phase immunoassay, the sample is contacted with an agent capable of binding the antigen and a detector agent comprising a visually detectable agent such as colloidal gold or silver labelled. The test sample is applied by flowing onto a defined zone of an insoluble porous support film having a pore size impassable to a complex formed between the antigen, if present, with the binding substance and the detector substance, but passable to the binding substance and detector substance while remaining uncomplexed in the absence of the desired antigen. If the antigen is present in the test specimen, the detector substance binds with the antigen and the binding substance to form a visually inspectable complex on the surface of the porous support film. After application of the test sample to the porous support, the surface of the porous support is visually inspected for color to determine the presence and quantity or the absence of the antigen being assayed.
[0103] In another assay, magnetic antibodies that bind to antigen are used to tag the antigens and a high Tc superconducting quantum interference device is used to measure the amount of free and bound antibody and hence the presence or level of antigens.
[0104] A liposome immunomigration, liquid-phase competition strip immunoassay is, for example, described in Glorio-Paulet et al, J Agric Food Chem 48 (5): 1678-1682, 2000. Biosensor devices may be employed to detect and report on antigen-antibody interactions such as those between the cytoplasmic domain of GPIb and an antibody or other binding agent that binds to this domain, and the ectodomain of GPIba and an antibody or antigen binding fragment or other binding agent which binds to this domain. Biosensor devices are described for example in US Patent Publication No. 20100006452.
[0105] A variety of methods have been developed in the art which require little skill and are rapid to perform, and which are therefore suitable for the detection of specific antigens, at the point of care. In particular, lateral flow, dipstick and capillary tube and biosensor-based kits are available in the art.
[0106] In some embodiments, the detection marker is a colloidal particle or microparticle. Colloidal metal and metalloid particles include those comprising gold, silver, platinum, iron, copper, selenium; metal complexes such as cyclopentadienylmanganese(I) tricarbonyl, gold cluster; and microparticles such as latex and dyed latex particles.
[0107] Additionally, recent developments in the field of protein capture arrays permit the simultaneous detection and/or quantification of a large number of proteins. For example, low-density protein arrays on filter membranes, such as the universal protein array system (Ge, Nucleic Acids Res. 28(2): e3, 2000) allow imaging of arrayed antigens using standard ELISA techniques and a scanning charge-coupled device (CCD) detector. Immuno-sensor arrays have also been developed that enable the simultaneous detection of clinical analytes.
[0108] In certain embodiments, the techniques used for detection of PMR domains in platelets will include internal or external standards to permit quantitative or semi-quantitative determination of those products, to thereby enable a valid comparison of the level in a biological sample with the corresponding level in a reference sample or samples. Such standards can be determined by the skilled practitioner using standard protocols. In specific examples, absolute values for the level of each domain.
[0109] The present invention further provides a system where data on which ratio of intact to total PMR are provided by a client server to a central processor which analyses and compares to a control and optionally considers other information such as patient age, sex, weight and other medical conditions and then provides a report, including, for example, a platelet proteolytic state, intact:total PMR ratio or platelet maturity profile.
(0110] Hence, knowledge-based computer software and hardware also form part of the present invention. In particular, the assays of the present invention may be used in existing or newly developed knowledge-based architecture or platforms associated with pathology services. For example, results from the assays are transmitted via a communications network (e.g. the internet) to a processing system in which an algorithm is stored and used to generate a predicted posterior probability value which translates to the index of disease probability which is then forwarded to an end user in the form of a diagnostic or predictive report.
[0111] The assays may, therefore, be in the form of a kit or computer-based system which comprises the reagents necessary to detect the intact to total GPIb ratio and the computer hardware and/or software to facilitate determination or determination and comparison and transmission of reports to a clinician.
[0112] In an illustrative example, the present invention contemplates a method of allowing a user to determine the platelet proteolytic state of a subject per se and/or with respect to thrombocytopenia, the method including receiving data in the form of a ratio of intact:total PMR ratio or other relationship value, via a communications network, the method includes conduct of the assay as described herein then transferring data from the user via a communications network; (b) processing the subject data via multivariate analysis to provide, for example, a platelet proteolytic state value; (c) determining the status of the subject in accordance with the results of the value in comparison with predetermined values; and (d) transferring an indication of the status of the subject to the user via the communications network reference to the multivariate analysis includes an algorithm which performs the multivariate or univariate analysis function. In some embodiments, the method includes, the method including receiving data in the form of a ratio of intact:total PMR ratio or other relationship value, via a communications network, the method includes conduct of the assay as described herein then transferring data from the user via a communications network.
[0113] Conveniently, the method generally further includes: (a) having the user determine the data using a remote end station; and (b) transferring the data from an end station to a base station via the communications network.
[0114] The base station can include first and second processing systems, in which case the method can include: (a) transferring the data to the first processing system; (b) transferring the data to the second processing system; and (c) causing the first processing system to perform the multivariate analysis function to generate the disease index value.
[0115] The method may also include: (a) transferring the results of the multivariate analysis function to the first processing system; and (b) causing the first processing system to determine the status of the subject. In this case, the method also includes at least one of: (a) transferring the data between the communications network and the first processing system through a first firewall; and (b) transferring the data between the first and the second processing systems through a second firewall.
[0116] The second processing system may be coupled to a database adapted to store predetermined data and/or the multivariate analysis function, the method include: (a) querying the database to obtain at least selected predetermined data or access to the multivariate analysis function from the database; and (b) comparing the selected predetermined data to the subject data or generating a predicted probability index. The second processing system can be coupled to a database, the method including storing the data in the database. Thus, the base station attempts to identify individuals having similar parameter values to the test subject and once the status has been determined on the basis of that identification, the base station provides an indication of the diagnosis to the end station.
[0117] The method can also include having the user determine the data using a secure array, the secure array of elements capable of determining the level of lipid analytes and having a number of features each located at respective position(s) on the respective code. In this case, the method typically includes causing the base station to: (a) determine the code from the data; (b) determine a layout indicating the position of each feature on the array; and (c) determine the parameter values in accordance with the determined layout, and the data.
[0118] The method can also include causing the base station to: (a) determine payment information, the payment information representing the provision of payment by the user; and (b) perform the comparison in response to the determination of the payment information.
(0119] The use of numerical values in the various ranges specified in this application, unless expressly indicated otherwise, are stated as approximations as though the minimum and maximum values within the stated ranges were both preceded by the word "about". In this manner, slight variations above and below the stated ranges can be used to achieve substantially the same results as values within the ranges. Also, the disclosure of these ranges is intended as a continuous range including every value between the minimum and maximum values.
(0120] In order that the invention may be readily understood and put into practical effect, particular preferred embodiments will now be described by way of the following non-limiting examples.
EXAMPLE 1
In one embodiment, a flow cytometry-based assay of platelet state has been developed:
[0121] A flow cytometry-based method has been developed for simultaneously analyzing intact/cleaved GPIba in permeabilized platelets in whole blood. A rabbit polyclonal or mouse monoclonal anti-GPIba cytoplasmic domain antibodies (Green) and a rabbit polyclonal or mouse monoclonal anti-GPIba ectodomain antibody (A 2; Red) are used to assess the amount of intact receptor relative to the total amount of tail (intact plus remnant) by flow cytometry (Figure 1). (0122] In accordance with the present invention, and in some embodiments, dual- labeling is lised involving phycoerythrin (PE)-labeled antibody against the GPIba ectodomain, platelets are rapidly fixed and washed by centrifugation then permeabilized with 0.1-0.5% (w/v) saponin (ThromboFix) in buffer containing Alexa-488-labeled anti- GPIba cytoplasmic tail IgG. Platelets are then washed in permeabilization buffer to remove any unbound cytoplasmic tail IgG and levels of respective antibody are assessed by flow cytometry, using the forward and side scatter characteristics of platelets and confirmed using antibodies against other platelet receptors (αιη>β3, PECAM- 1). The level of Alexa-488 staining reflects the detected total amount of expressed GPIba, while levels of PE staining reflect the detected amount of the ectodomain portion of GPIba (intact GPIba).
EXAMPLE 2
The GPIba intac total ratio provides a sensitive measure of enhanced GPIb proteolysis in disease states
[0123] The assay described herein has been verified in platelets from 20 healthy donors and 1 1 patients with thrombocytopenia, by testing untreated platelets or platelets treated with agents known to induce proteolysis of GPIbq in permeabilized versus non- permeabilized platelets, in washed platelets versus whole blood, etc. Flow cytometry data correlate with the degree of shedding assessed by Western blotting platelets from the same samples. An index reporting on the normal range for GPIba molecular status has been developed from data obtained from 20 healthy donors at the Australian Centre for Blood Diseases donor database.
[0124] The proteolytic status of GPIba is sensitive to shedding in vitro as the GPIba intact:total ratio (arbitrary units) in platelets from 20 healthy donors (0.92±0.1 1 ) was significantly reduced by 10-min treatment of platelets in plasma with a reagent (NEM) that directly induces GPIba shedding (0.67±0.05; n=l 1, P <0.001). This indicated the GPIba intac total ratio provides a sensitive measure of enhanced proteolysis in disease states, supported by preliminary studies in patients with thrombocytopenia
[0125] First, as proof-of-concept that the proteolytic status of GPIba could be measured in clinical samples from thrombocytopenic patients, and that GPIba proteolytic status changes depending on the cause of the thrombocytopenia, 1 1 patients with subnormal platelet count (<100 x 109/1) due to various causes were initially analyzed. Table 1 shows that the GPIba intactrtotal staining ratio fell below the normal range in ITP (tt=7), antiphospholipid antibody syndrome (APS; n=\) or thrombotic thrombocytopenia purpura (TTP; «=3).
[0126] Table 2 shows that there was no significant correlation between GPIba intac total ratio and platelet count, GPIba surface levels or platelet volume in the Thrombocytopenia group.
[0127] As shown in Table 2, there was a lack of any significant correlation between GPIba intact:total ratio and platelet count, platelet size (mean platelet volume, range 8.5-10.5 units) or GPIba surface levels in the thrombocytopenia group. This supports the value of the ratio as an independent measure of platelet quality. In contrast, there was a significant relationship between GPIba surface levels and platelet count (Table 2) suggesting that unlike the GPIba ratio, GPIba surface levels alone do not adequately measure platelet quality. Temporal analysis of individual APS and TTP patients at 1 -2 day intervals following treatment with steroids or plasma-exchange, respectively, resulted in recovery of platelet count from <20 to >150 x 109/1 beyond days 5-7, whereas the GPIba intact.total ratio normalized (>0.9) 2-3 days earlier than full recovery of platelet count.
[0128] The unknown relative contribution of platelet consumption and platelet production to thrombocytopenia is an ongoing clinical problem. The present invention provides, inter alia, a new clinical tool for monitoring platelet function and survival in thrombocytopenic samples that will aid clinical decision-making in the setting of thrombocytopenia. EXAMPLE 3
GPIba (Intact: Total) is a reliable early marker for evaluating ITP and an early marker for evaluating response to treatment
[0129] Gardiner et al, Blood 111: 165-74, 2008a showed that engagement of another platelet Fc receptor, FcyRIIa, by anti-platelet antibodies induced ectodomain shedding of GPVI, generating soluble GPVI (sGPVI) in plasma. However, apart from a single individual with an anti-GPVI auto-antibody (Gardiner et al, Journal of Thrombosis and Haemostasis, 6: 1 175-1 182, 2008b), it is not known whether other antiplatelet auto-antibodies associated with idiopathic thrombocytopenic purpura (ITP) affect GPVI and/or GPIba surface expression.
[0130] Platelet receptor expression and platelet parameters were assessed in patients with idiopathic thrombocytopenia (ITP) before and during steroid treatment.
[0131] The diagnosis of ITP was based on clinical and laboratory data according to consensus guidelines (Neunert et al, Blood 117: 4190-4120, 201 1 ). Flow cytometry (Gardiner et al, 2008b (supra)) and sGPVI ELISA (Al-Tamimi et al, Platelets 20: 143- 149, 2009) were used to assess: 1 ) whether patients with ITP had dysregulated expression or shedding of GPVI or GPIba, and 2) changes in platelet receptor expression after treatment. The absolute-immature platelet fraction (A-IPF) based on thiazole orange (TO)-staining of platelet mRNA was calculated as % platelets with mR A above threshold x platelet count (as described by Barsam et al, Blood 7/ 7(21): 5723-32, 201 1 incorporated herein by reference in its entirety).
[0132] Unlike platelet count, A-IPF or surface levels, GPIba Intact:Total is independent of:
Platelet count r2 = 0.021 P=0.815
GPIba surface level r2 = 0.507 P=0.1 17.
[0133] As shown in Table 3 (updated in Table 7) and Figure 3, GPVI shedding (decreased GPVI surface expression and increased sGPVI in plasma) is associated with ITP, consistent with GPVI shedding in vivo following engagement of FcyRIIa by anti- platelet antibodies (Gardiner et al. 2008a {supra)). This has previously been shown for an ITP patient with an anti-GPVI IgG (Gardiner et al 2008b (supra)).
[0134] The proteolytic status of GPIba (Intact:Total) is a reliable early marker for evaluating response to treatment in ITP patients.
[0135] GPIba Intact:Total provides an early marker for thrombocytopenia and an early marker for evaluating the response to treatment with steroid therapy or other therapies.
EXAMPLE 4
Current diagnostic methods for monitoring platelets
[0136] Existing methods for analyzing platelets or platelet receptors in thrombocytopenia and other haematological defects include estimating the number of platelets hemocytometrically.
[0137] Anuclear platelets contain RNA and "reticulated" or immature platelets (reticulocytes) stain positively with thiazole orange (TO) whereas the percentage of reticulated platelets (%RP) decreases the platelets age. The age of a population of platelets has been widely assessed according to the research literature using thiazole orange (TO), a membrane-permeable nucleic acid-specific fluorescent dye. In healthy individuals, %RP is -6% of the total platelet population, but is increased to -70% in patients with ITP, and increases to 28% during the recovery phase of chemotherapy- related thrombocytopenia. A recent study (Barsam et al, 201 1 (supra)) describes the use of the Sysmex automated system to analyze the immature platelet fraction in the clinical setting, by examining 8 ITP patients pre- and post-treatment. The limitation of this approach is the lack of standardization, TO staining is highly variable between individuals, may be disadvantageously sensitive to the time between sample collection and analysis, is dependent on platelet size and does not discriminate between different causes of thrombocytopenia. [0138] In another approach, the glycocalicin index (GCI) is determined. The soluble plasma GPIba concentration normalized for platelet count is inversely correlated with %RP in ITP, consistent with increased GPIba shedding during platelet destruction. This method lacks sensitivity because background levels of glycocalicin are very high (1 -3 g/ml). The GCI is not routinely measured clinically, and does not accurately report on the quality of circulating platelets at the time of measurement.
[0139] In a further approach, GPIba surface levels are determined. However, GPIba surface expression decreases as normal platelets age in the circulation, and also varies with platelet count and size. Thus, changes due to disease are not distinguishable, nor can it be determined whether altered levels are due to shedding or other causes. The surface expression levels will also not be sensitive to whether the cause of increased shedding is successfully treated, whereas measuring proteolytic status as determined herein is independent of platelet count and GPIba expression levels.
EXAMPLE 5
Platelet PMR intact/total ratio and platelet parameters in patients with idiopathic thrombocytopenia (ITP) before and during steroid treatment
[0140] The GPIba index (Intact/total) and platelet counts were determined in subjects (Subjects C, X, V ad J) with chronic ITP before and after various treatment protocols. The results are represented graphically in Figure 4 to Figure 7. Subject C was thrombocytopenic and platelet counts gradually increased over time during steroid therapy (after one month). However, the GPIba index was approximately normal from week 1 to week 20. Subject X was non-responsive to steroids in terms of platelet counts and exhibited low platelet counts. The GPIba index level was initially low, fluctuated, but increased prior to azathioprine treatment notwithstanding decreasing platelet counts. Upon treatment with azathioprine platelet levels increased and the GPIba index increased to a normal level (0.9). Subject V displayed a rising GPIba index on Romiplostin. For Subject J, an improvement in platelet quality (normalisation of the GPIba Intact:Total ratio) precedes improvement in platelet count (see Figure 7). The proteolytic status of GPIba (IntacfcTotal) is a reliable early marker for evaluating response to treatment in ITP patients. Particularly in patients who have a low platelet count such as below 100, or about 100 x 106/1.
[0141] The disclosure of every patent, patent application, and publication cited herein is hereby incorporated herein by reference in its entirety.
[0142] The citation of any reference herein should not be construed as an admission that such reference is available as "Prior Art" to the instant application.
[0143] Many modifications will be apparent to those skilled in the art without departing from the scope of the present invention.
TABLE 1: Summary of clinical data for Example 2
Figure imgf000040_0001
1 Geomean values for PE-A 2 (intact GPIba) and Alexa 88-GPIba tail (total GPIba).
2
P value calculated using unpaired, two-tailed t test.
TABLE 2: Summaries of data for Example 2
GPIb ratio v platelet count r" = 0.0163, /' = 0.705 No significance
GPIb ratio v surface levels r" = 0.1876, ° - 0.332 No significance
GPIb ratio v platelet vol r" = 0.1 17, = 0.45 No significance
GPIb surface levels v platelet count r = 0.5995, P = 0.04 Significant
GPIb surface levels v platelet vol r = 0.235, F = 0.18 No significance TABLE 3: Patient data for Example 4
Figure imgf000041_0001
Healthy Donors - aged 18-42 (59% female)
- ITP Patients - aged 28-79 (67% female); P values compared to Healthy Donors (ns, not significant).
Treatment with steroids (Prednisolone, Dapsone or in combination).
d Earliest time point was 1 week, latest time point >4 weeks (n a, not available) e Platelet count in platelet-rich plasma, reference range, 150-400 x 109/L
f
Reference values in healthy donors: mean 19 ± 4 ng/mL, range 1 1 -24 ng/mL, n=l 0 8 Measured using anti-GPIba cytoplasmic tail IgG that recognizes intact GPIba and remnant tail (-16 kDa, red.). TABLE 4
Figure imgf000042_0001
TABLE 5: Platelet ectodomain sequences cleaved by ADAMs
Name Cut by human Cut by human Site rADAMlO rADAM17
Human GPV1 Yes No WPAR*QYY cleavage site is
R243Q
Human GPIba No . Yes "WLRG*VLQ cleavage site is
G465V
Human GPV Yes Yes 4y'AQP*VTT cleavage site is
P494V
TABLE 6: List of suitable fluorophores
Probe Ex1 (nm) Em2 (nm)
Reactive and conjugated probes
Hydroxycoumarin 325 386
Aminocoumarin 350 455
Methoxycoumarin 360 410
Cascade Blue 375; 400 423
Lucifer Yellow 425 528
NBD 466 539
R-Phycoerythrin (PE) 480; 565 578
PE-Cy5 conjugates 480; 565; 650 670
PE-Cy7 conjugates 480; 565; 743 767
APC-Cy7 conjugates 650; 755 767
Red 613 480; 565 613
Fluorescein 495 519
FluorX 494 520
BODIPY-FL 503 512
TRITC 547 574
X-Rhodamine 570 576
Lissamine Rhodamine B 570 590
PerCP 490 675
Texas Red 589 615
Allophycocyanin (APC) 650 660
TruRed 490, 675 695
Alexa Fluor 350 346 445
Alexa Fluor 430 430 545
Alexa Fluor 488 494 517
Alexa Fluor 532 530 555
Alexa Fluor 546 556 573
Alexa Fluor 555 556 573
Alexa Fluor 568 578 603
Alexa Fluor 594 590 617
Alexa Fluor 633 621 639
Alexa Fluor 647 650 688
Alexa Fluor 660 663 690
Alexa Fluor 680 679 702
Alexa Fluor 700 696 719
Alexa Fluor 750 752 779
Figure imgf000044_0001
Probe Ex1 (nm) Em2 (nm)
EYFP 514 527
DsRed 558 583
Other probes
Monochlorobimane 380 461
Calcein 496 517
Ex: Peak excitation wavelength (nm)
Em: Peak emission wavelength (nm)
TABLE 7: Patient data for chronic ITP patients with platelet count <40 when off ^ treatment (Example 5) updated from Example 3
Figure imgf000045_0001
Mean platelet vol
8.45 ± 0.2 9.6±0.3 8.6 ± 0.3 . 8.4± 0.4
(fL)
p* * ns ns
GPVI
274 ± 26 86 ± 32 159 ± 12 158 ± 16
(GeoMean)
p* ** ns
Plasma sGPVI 19.9 ± 2.97 40 ± 8 50 ± 6 71 ± 12
(ng ml)
p* ** *** * * *
GPIba
711 ± 37 237 ± 91 677 ± 33 736 ± 35 . (GeoMean)
p* *** ns ns
7GPIba 0.922 ± 0.01 0. 48 ± 0.17 0.90 ± 0.04 0.92 ± 0.02
Intact:Total
P* *** ns ns
a Healthy Donors - aged 18-42 (59% female)
b ITP Patients - aged 28-79 (67% female); P values compared to Healthy Donors (ns, not significant). Platelet count < 40 when off treatment
Earliest time point was 1 week, latest time point >4 weeks. Treatment with steroids (Prednisolone, Dapsone or in combination).
d Platelet count in platelet-rich plasma, reference range, 150-400 x 109/L
Measured by in-house ELISA. Reference values in healthy donors: mean 19 ± 4 ng/mL, range 1 1 -24 ng/mL, n=10 (Al-Tamimi et al, 2009 (supra))
Ratio of intact GPIba to total amount of GPIba on circulating platelets measured with assay using antibodies described in Gardiner et al, 2007 (supra).
Difference from data obtained in healthy donors assessed by student t test. *=P<0.1 ; **=P<0.05; ***=P<0.001 ; ns = not significant
BIBLIOGRAPHY
Al-Tamimi et al., Platelets 20: 143-149, 2009
Ausubel (Ed), "Current Protocols in Molecular Biology", 5lh Edition, John Wiley & Sons, Inc, NY, Chapter 1 1 , 2002
Ausubel et al, Current Protocols in Molecular Biology John Wiley & Sons Inc, in particular Section III of Chapter 1 1, 1994- 1998
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Cautrecases, J. Biol. Chem. 245: 3059, 1970
Clackson et al, Nature 352: 624-628, 1991
Coligan et al, "Current Protocols in Immunology", John Wiley & Sons, Inc, 1991 Gardiner et al, Blood 111: 165-74, 2008a
Gardiner et al, Journal of Thrombosis and Haemostasis 6: 1 175-1 182, 2008b
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Garrad et al, Bio/Technology 9: 1373-1377, 1991
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Glockscuther e/ a/. Biochem. 29: 1363-1367,
Glorio-Paulet et al, J Agric Food Chem 48 (5): 1678-1682, 2000
Gram et al, PNAS 89: 3576-3580, 1992
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Harlow and Lane, "Antibodies, A Laboratory Manual", Cold Spring Harbor Publications, New York, 1988
Hawkins et al, J Mol Biol 226: 889-896, 1992
Hoogenboom et al, Nuc Acid Res 19: 4133-4137, 1991
Huse et al, Science 246: 1275-1281 , 1989
Jalkanen et al, J. Cell. Biol. 101: 976-985, 1985
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Kreber et al, J. Immunol Methods, 20/(1): 35-55
Lacobilli et al, Breast Cancer Research and Treatment 11: 19-30, 1988
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Reiter et al, Bioche . 33: 5451 -5459, 1994
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Winter and Milstein, Nature 349: 293, 1991

Claims

- 48 - WHAT IS CLAIMED IS:
1. An assay for assessing the proteolytic state of test platelets in a biological sample, the assay comprising detecting the level of intact platelet membrane receptor (PMR) (a) and detecting the level of total (cleaved and uncleaved) PMR (b) associated with platelets in the sample, and comparing a measure of the relationship between levels (a) and (b) ("test relationship") to a corresponding relationship measure derived from at least one reference biological sample ("reference relationship") selected from a sample obtained from one or more normal (e.g. healthy) reference subjects ("normal reference relationship") or from one or more reference samples having predetermined measured levels of intact and total PMR indicating that the reference subject has supernormal measured levels of cleaved PMR associated with platelets ("supernormal cleavage reference relationship"), wherein the similarity or difference between the test relationship and the reference relationship indicates the proteolytic state of platelets in the test sample.
2. The assay of claim 1 comprising (i) optionally contacting test platelets with an agent capable of permeabilizing platelets, (ii) contacting test platelets with a PMR antigen-binding molecule that binds to the ectodomain of PMR on the surface of platelets to provide a measure of the level of intact PMR; (iii) contacting test platelets with a PMR antigen-binding molecule that binds to the residual domain of PMR associated with platelets after ectodomain cleavage to provide a measure of the level of total (cleaved and uncleaved) PMR ("total"); (iv) comparing a measure of the relationship between the measured levels in (ii) and (iii) ("test relationship") to a corresponding relationship measure from at least one reference sample ("reference relationship") selected from a sample obtained from one or more normal (e.g. healthy) reference subjects ("normal reference relationship") or from one or more reference subjects having predetermined measured levels of intact and - 49 - total PMR indicating that the reference subject has supernormal, measured levels of cleaved PMR associated with platelets ("supernormal cleavage reference relationship"), wherein the similarity or difference between the test and reference relationships indicates the proteolytic state of platelets in the test sample.
3. The assay of claim 1 or 2 wherein a similarity between the test relationship and the normal reference relationship or a difference between the test relationship and the supernormal cleavage reference relationship indicates the absence of supernormal levels of proteolytic cleavage in test platelets, and wherein a similarity between the test relationship and the supernormal cleavage reference relationship or a difference between the test relationship and the normal reference relationship indicate the presence of supernormal levels of proteolytic cleavage in test platelets.
4. The assay of claim 1 or 2 or 3 wherein the test platelets are stored platelets, such as in stored blood or stored platelet concentrates.
5. The assay of any one of claims 1 to 4 wherein the biological sample is whole blood.
6. The assay of any one of claims 1 to 5 further comprisirig contacting platelets with an RNA-staining molecule and measuring the level of RNA in test platelets.
7. The assay of any one of claims 1 to 6 wherein the PMR is GPIba.
8. The assay of claim 1 to 7 wherein the PMR is GPIba and of the assay further comprises each step wherein the PMR is GPV and/or wherein the PMR is GPVI.
9. The assay of any one of claims 1 to 8 for use in the diagnosis, prognosis, monitoring, treatment or management of conditions associated with - 50 - thrombocytopenia or for use in the management of stored blood products.
10. The assay of any one of claims 1 to 10 wherein the antigen binding molecule that binds to the ectodomain of PMR on the surface of platelets is labelled with a first fluorescent or other detectable molecule, wherein the antigen binding molecule that binds to the residual domain of PMR associated with platelets after receptor cleavage is labelled with a second fluorescent or other detectable molecule, and wherein test platelets are subjected to flow cytometry to provide a measure of the level of intact PMR or proportion of platelets with intact PMR ("intact") and a measure of the level of total (cleaved and uncleaved) PMR or the proportion of platelets with cleaved and uncleaved PMR ("total").
1 1. The assay of claim 10 wherein the first and second fluorescent or other detectable molecules are different.
12. The assay of claim 9 or 1 1 further comprising contacting platelets with an RNA- staining fluorescent molecule and measuring the level of RNA in test platelets.
13. The assay of any one of claims 1 or 12 wherein the test and reference relationships are compared for two or more PMR.
14. A kit for assessing the proteolytic state of test platelets in a biological sample the kit comprising: (i) a PMR antigen-binding molecule that binds to the shed ectodomain of PMR, wherein the antigen-binding molecule is either immobilized (bound) to one or more test portions and/or contained within a conjugate portion; and/or (ii) a PMR antigen-binding molecule that binds to the residual domain of PMR associated with platelets after ectodomain cleavage, wherein the antigen- binding molecule is either immobilized (bound) to one or more test portions and/or contained within a conjugate portion and (iii) instructions for using the device for assessing the proteolytic status of platelets.
15. A kit of claim 14 for use in the diagnosis, prognosis, monitoring, treatment or management of conditions associated with thrombocytopenia.
16. The kit of claim 14 for use in the management of stored blood products.
17. The kit of any one of claims 14 to 16 wherein the PMR is GPIba.
18. The kit of claim 14 to 17 wherein the PMR receptor is GPIba and wherein the kit further comprises antigen-binding molecules that bind to the shed ectodomain and residual domain of GPVI and/or GPV.
19. An assay for differentially treating a population with respect to thrombocytopenia comprising (i) detecting the level of intact PMR (a or ta) and detecting the level of total (cleaved or uncleaved) PMR (b or tb) associated with platelets in a test biological sample, and (ii) comparing a measure of the relationship between levels (a) and (b) (the "test" relationship) to a control, wherein subjects in the population are stratified with respect to the proteolytic state of their platelets determined using the test relationship, and wherein subjects receive different treatment regimes and/or monitoring regimes based upon the proteolytic state of the platelets determined using the test relationship.
20. The assay of claim 19 wherein the PMR is GPIba.
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