WO2012100682A1 - Respiratory metabolism-associated gene bnaox1 from brassica napus and use thereof - Google Patents
Respiratory metabolism-associated gene bnaox1 from brassica napus and use thereof Download PDFInfo
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- WO2012100682A1 WO2012100682A1 PCT/CN2012/070283 CN2012070283W WO2012100682A1 WO 2012100682 A1 WO2012100682 A1 WO 2012100682A1 CN 2012070283 W CN2012070283 W CN 2012070283W WO 2012100682 A1 WO2012100682 A1 WO 2012100682A1
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- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
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- C12N15/8243—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
- C12N15/8247—Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine involving modified lipid metabolism, e.g. seed oil composition
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- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
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Definitions
- the present invention relates to the field of plant genetic engineering, more particularly to a respiratory metabolism-associated enzyme BnAOXl gene and protein, as well as to the use of the respiratory metabolism-associated enzyme BnAOXl gene and protein to increase the yield and oil content of oil crops.
- Rapeseed is one of the most important sources for edible vegetable oil and forage protein, as well as the most important raw material for biodiesel in Europe. Rape (Brassica napus) is the oil crop of the largest acreage in China, and is the fifth-largest crop in China following rice, wheat, maize, and soybean. Rapeseed oil is the major edible oil for Chinese residents, accounting for more than 40% of the total domestic vegetable oil consumption. As the biggest country in consuming vegetable oil in the world, however, China has a self-supporting vegetable oil of less than 40%. To meet the conflicting need, in addition to expansion of planting area, increasing rape oil content and rape yield are the most efficient ways to increase rape oil yield per unit planting area. High yield of rape can significantly improve the benefit from rape production and increase the total profit of rapeseed.
- Cyanide-resistant respiration refers to a respiratory pathway insensitive to cyanide.
- An alternative oxidase is the terminal oxidase of the cyanide-resistant respiratory pathway in plant mitochondrial respiratory chain, and is extensively found in higher plants and some of fungi and algae. While the alternative oxidase is a terminal oxidase of the alternative pathway, its endogenous substrates include the reduced ubiquinone and O2.
- the respiratory electron flow of the alternative pathway branches off at ubiquinone in the main path (cytochrome pathway) and bypasses two ATP-formation sites of Complex III and IV.
- Four electrons from the electron flow are transferred directly by AOX to an oxygen molecule, which is reduced to H2O, while the energy not used for ATP synthesis is lost in the form of heat release.
- the alternative oxidase is a di-iron carboxylate protein. It has structural features common to other di-iron carboxylate proteins and a function of eliminating molecular oxygen. More importantly, it can also regulate actively the operation degree of cyanide resistant respiratory pathway by alternating the structure itself, thus further regulating various aspects of the cellular metabolism and functionality, in order to adapt to variable environmental conditions, enhance the plants' adaptation to various adverse environments and regulate growth rate in plants.
- the alternative oxidase is involved in cellular apoptosis and photosynthesis. Regulation of the AOX activity is affected by various factors. Environmental stresses, plant injury, frost, drought, osmotic pressure, pathogenic bacteria, etc. may induce the expression of AOX.
- Salicylic acid SA
- hydrogen peroxide hydrogen peroxide
- ethylene ethylene
- main respiratory chain inhibitors may also induce the expression of AOX in plants.
- Cyanide-resistant respiration activity and AOX expression level are higher in the spadix of the thermogenic plant.
- the AOX expression level is associated with the developmental stages. For example, AOX is expressed during senescence and fruit maturation.
- AOX regulates energy metabolism. When the energy metabolism is saturated, AOX pathway releases the energy by way of heat elimination and maintains the electron transport and TCA.
- "The energy overflow hypothesis" put forward by Lambers (1982, Physiology Plant 55:478) states that transferring of electrons through AOX may enable TCA cycle and glycolysis to proceed when the main respiratory chain activity is inhibited or the reduction power within a cell is running high.
- the AOX activity can be activated by pyruvate, a substrate in TCA cycle, indicating that transfer of part of the electrons through the AOX pathway can be induced when the substrate concentration in TCA cycle is too high.
- Environmental changes result in differences in the AOX expression, which has effects both on mitochondrial functions and on cellular functions outside the mitochondria.
- Oxygen stress induces the expression of the AOX to effect anti- oxidation, that is, Oxidation mediated by the AOX can decrease reactive oxygen species (ROS) generated by the main respiratory chain when the cytochrome pathway is inhibited.
- ROS reactive oxygen species
- the ROS level is decreased when AOX is over-expressed in a transgenic tobacco plant, while the ROS level is increased when AOX is not over-expressed in the transgenic tobacco plant.
- Hansen et al (2002, Thermochim Acta 388:415) found that environmental changes can alter the growth rate of a plant, that is, AOX plays a balancing role in growth kinetics of a plant.
- thermogenic plant Heat released through AOX in the thermogenic plant may enable pollens to emanate fragrance, thus attract insect vectors (Meeuse, (1975) Annu Rev Plant Physiol 26:117). Expression of AOX in non-thermogenic plants is not associated to such a thermogenesis (Borecky and Vercesi (2005) Bioscience Reports 25:271). AOX can effectively control respiration rate and maintain energy homeostasis in cells to ensure normal growth of a plant encountering environmental changes (Hansen et al (2002) Thermochim Acta 388:415).
- AOX not only allows Arabidopsis thaliana to germinate at low temperatures, but also can prevent the generation of peroxides by plant tissues under adverse conditions, to avoid adverse effect on various cellular functions (Fiorani et al (2005) Plant Physiology 139:1795). AOX plays a key role in the cytoplasm and in some of the carbon metabolism pathways (Umbach et al (2005) Plant Physiol 139:1806). A variety of environmental stresses can alter the proceeding of the cyanide-resistant pathway in plants. However, those studies in this regard are still very superficial, and the signal regulation mechanism and physiological significance of said proceeding is unclear yet.
- the current invention provides methods and means to improve plant seed yield and seed oil content by increasing the expression of AOX1, as will become apparent from the following description, examples, drawings and claims provided herein.
- a method for increasing oil content, such as seed oil content, and/or seed yield, such as Thousand Kernel Weight in plants comprising increasing expression of a nucleic acid encoding an AOXl protein.
- said AOXl protein has at least 60% sequence identity to SEQ ID No. 2.
- said AOXl protein has at least 80% sequence identity to SEQ ID No. 2.
- said nucleic acid has at least 80% sequence identity to SEQ ID NO. 1.
- a method for increasing seed oil content and/or seed yield, such as Thousand Kernel Weight in plants comprising increasing expression of a nucleic acid encoding a protein with has at least 80% sequence identity to the AOX1B protein from Arabidopsis thaliana.
- said nucleic acid has at least 80% sequence identity to the AOX1B coding sequence from Arabidopsis thaliana.
- a method for increasing oil content and/or seed yield, such as Thousand Kernel Weight in plants comprising increasing expression of a nucleic acid encoding an AOXl protein comprising the steps of
- nucleic acid encoding an AOXl protein
- said plant-expressible promoter is a constitutive promoter, and in yet another embodiment, said constitutive promoter is the 35S promoter. In a further embodiment, said plant-expressible promoter is a seed-specific promoter.
- plants are provided that are obtained by the methods according to the invention.
- Another embodiment provides seeds from plants obtained by the methods according to the invention.
- oil from the seeds of plants obtained by the methods according to the invention are provided.
- a further object of the invention is to provide an isolated DNA encoding the Brassica napus AOXl protein of SEQ ID No. 2, such as an isolated DNA consisting of SEQ ID No. 1. Yet a further object of the invention provides an isolated Brassica napus AOX protein consisting of the nucleotide sequence SEQ ID No. 2.
- the invention further provides a chimeric gene comprising the following operably linked nucleic acid molecules:
- nucleic acid encoding an AOXl protein containing at least 60% sequence identity to SEQ ID No. 2; and optionally
- said AOXl protein contains at least 80% sequence identity to SEQ ID No. 2, whereas in yet another embodiment said nucleic acid encoding an AOXl protein contains at least 80% sequence identity to SEQ ID No. 1.
- said plant-expressible promoter is a constitutive promoter, such as the 35S promoter, and in yet a further embodiment, said plant-expressible promoter is a seed-specific promoter.
- the invention further relates to the use of the chimeric genes or of the isolated DNA according to the invention to increase plant seed oil content and/or Thousand Kernel Weight.
- the invention further provides methods for producing oil, comprising harvesting seeds from the plants according to the invention and extracting the oil from said seeds.
- the invention provides a method of producing food or feed such as oil, meal, grain, starch, flour or protein, or an industrial product such as biofuel, fiber, industrial chemicals, a pharmaceutical or a neutraceutical, comprising obtaining the plant according to the invention or a part thereof, and preparing the food, feed, or industrial product from the plant or part thereof.
- Figure 1 Schematic representation of an Arabidopsis expression vector for a rape respiratory metabolism-associated gene BnAOXl.
- FIG. 3 Comparison of the seed sizes between the transgenic plant carrying a rape respiratory metabolism-associated gene BnAOXl and the wild type control, wherein seeds from the wild type control are shown in Fig.3A, and those from the transgenic line are shown in Fig. 3B.
- the current invention is based on the finding that overexpression of AOXl in Arabidopsis results in increased seed oil content and increased Thousand Kernel Weight.
- a method for increasing oil content, such as seed oil content, in plants, and/or seed yield, such as Thousand Kernel Weight comprising increasing expression of a nucleic acid encoding an AOXl protein.
- said AOXl protein has at least 60% sequence identity to SEQ ID No. 2.
- said AOXl protein has at least 80% sequence identity to SEQ ID No. 2.
- said nucleic acid has at least 80% sequence identity to SEQ ID NO. 1.
- said AOXl protein has at least 80% sequence identity to the AOXIB protein from Arabidopsis thaliana.
- said nucleic acid has at least 80% sequence identity to the AOXIB coding sequence from Arabidopsis thaliana.
- Increasing oil content such as seed oil content, in plants, and/or seed yield, such as Thousand Kernel Weight, as used herein, can be increasing oil content, or increasing seed yield, or increasing both oil content and seed yield.
- At least 60% sequence identity can be, for example, at least 60%, or at least 65%, or at least 70%, or at least 75%, or at least 80%, or at least 85%, or at least 90%, or at least 95%, or at least 97%, or at least 98%, or at least 99%, or 100% sequence identity.
- At least 80% sequence identity can be, for example, at least 80%, or at least 83%, or at least 85%, or at least 87%, or at least 90%, or at least 95%, or at least 97%, or at least 98%, or at least 99%, or 100% sequence identity.
- the methods and means described herein are believed to be suitable for all plant cells and plants, both dicotyledonous and monocotyledonous plant cells and plants including but not limited to cotton, Brassica, oilseed rape, wheat, corn or maize, barley, sunflowers, rice, oats, sugarcane, soybean, vegetables (including chicory, lettuce, tomato), tobacco, potato, sugarbeet, papaya, pineapple, mango, Arabidopsis thaliana, but also plants used in horticulture, floriculture or forestry.
- oil producing plants such as rapeseed ⁇ Brassica spp), flax ⁇ Linum usitatissimuni) , safflower ⁇ Carthamus tinctorius), sunflower ⁇ Helianthus annuus), maize or corn ⁇ Zea mays), soybean ⁇ Glycine max), mustard ⁇ Brassica spp.
- the methods and means described herein can also be used in algae such as Scenedesmus dimorphus, Euglena gracilis, Phaeodactylum tricornutum, Pleurochrysis carterae, Prymnesium parvum, Tetraselmis chui, Tetraselmis suecica, Isochrysis galbana, Nannochloropsis salina, Botryococcus braunii, Dunaliella tertiolecta, Nannochloris spp. or Spirulina spp.
- algae such as Scenedesmus dimorphus, Euglena gracilis, Phaeodactylum tricornutum, Pleurochrysis carterae, Prymnesium parvum, Tetraselmis chui, Tetraselmis suecica, Isochrysis galbana, Nannochloropsis salina, Botryococcus braunii, Dun
- a "Brassica plant” is a plant which belongs to one of the species Brassica napus, Brassica rapa (or campestris) , or Brassica juncea. Alternatively, the plant can belong to a species originating from intercrossing of these Brassica species, such as B. napocampestris, or of an artificial crossing of one of these Brassica species with another species of the Cruciferacea.
- a Brassica oilseed plant refers to any one of the species Brassica napus, Brassica rapa (or campestris), Brassica carinata, Brassica nigra or Brassica juncea.
- An increase in seed oil content can be an increase with at least 2%, or at least 5%, or at least 10%, or at least 15%, or at least 20%, or at least 25%, or at least 30%, or at least 40%, or at least 50%. Said increase is an increase with respect to levels as obtained in control plants.
- Thousand Kernel Weight as used herein, also “TKW”, refers to the weight in grams of 1000 seeds. An increased TKW may result from an increase in seed size and/or an increase in seed weight.
- An increase in Thousand Kernel Weight can be an increase with at least 2%, or at least 5%, or at least 10%, or at least 15%, or at least 20%, or at least 25%, or at least 30%, or at least 40%, or at least 50%. Said increase is an increase with respect to Thousand Kernel Weight as obtained in control plants.
- control plant as used herein is generally a plant of the same species which has wild-type levels of AOXl.
- Wild-type levels of AOXl refers to the typical levels of AOXl protein in a plant as it most commonly occurs in nature. Said control plant has thus not been provided either with a nucleic acid molecule encoding AOXl, or with a nucleic acid activating expression of the endogenous AOXl, such as a T-DNA activation tag or a promoter with stronger activity than the endogenous promoter.
- the AOXl protein refers the Alternative Oxidase protein, which is the terminal oxidase of the cyanide -resistant respiratory pathway in the plant mitochondrial respiratory chain. Endogenous substrates of AOX1 include reduced ubiquinone and O 2 . The respiratory electron flow of the alternative pathway branches off at ubiquinone in the main path (cytochrome pathway) and bypasses two ATP-formation sites of Complex III and IV. Four electrons from the electron flow are transferred directly by AOX1 to an oxygen molecule, which is reduced to H2O, while the energy not used for ATP synthesis is lost in the form of heat release.
- AOX1 is a di-iron carboxylate protein. It has structural features common to other di-iron carboxylate proteins and a function of eliminating molecular oxygen.
- An AOX1 protein is a protein that contains at least 50%, or at least 55%, or at least 60%, or at least 65%, or at least 70%, or at least 75%, or at least 80%, or at least 85%, or at least 90%, or at least 95%, or at least 98%, or at least 99% sequence identity to any of the AOX proteins as described in this application.
- AOX proteins are the Arabidopsis thaliana AOXl proteins AOX1A (AT3G22370), AOXIB (AT3G22360), AOX1C (AT3G27620), and AOX1D (AT1G32350).
- AOXIB protein from Arabidopsis thaliana also AtAOXlB, as used herein refers to the protein with accession number At3g22360
- AOXIB coding sequence from Arabidopsis thaliana also AtAOXlB, refers to the coding sequence with accession number At3g22360.
- homologous nucleotide sequence may be identified and isolated by hybridization under stringent conditions using as probes identified nucleotide sequences.
- High stringency conditions can be provided, for example, by hybridization at 65°C in an aqueous solution containing 6x SSC (20x SSC contains 3.0 M NaCl, 0.3 M Na-citrate, pH 7.0), 5x Denhardt's (lOOX Denhardt's contains 2% Ficoll, 2% Polyvinyl pyrollidone, 2% Bovine Serum Albumin), 0.5% sodium dodecyl sulphate (SDS), and 20 ⁇ g/ml denaturated carrier DNA (single-stranded fish sperm DNA, with an average length of 120 - 3000 nucleotides) as non-specific competitor. Following hybridization, high stringency washing may be done in several steps, with a final wash (about 30 min) at the hybridization temperature in 0.2-0. lx SSC, 0.1% SDS.
- Moderate stringency conditions refers to conditions equivalent to hybridization in the above described solution but at about 60-62°C. Moderate stringency washing may be done at the hybridization temperature in lx SSC, 0.1% SDS.
- Low stringency refers to conditions equivalent to hybridization in the above described solution at about 50-52°C. Low stringency washing may be done at the hybridization temperature in 2x SSC, 0.1% SDS. See also Sambrook et al. (1989) and Sambrook and Russell (2001).
- sequences encoding AOX1 may also be obtained by DNA amplification using oligonucleotides specific for genes encoding AOXl as primers, such as but not limited to oligonucleotides comprising or consisting of about 20 to about 50 consecutive nucleotides from the known nucleotide sequences or their complement.
- an AOXl protein which has "at least 80% sequence identity to SEQ ID No. 2" can be an AOXl protein with 80%, or 83%, or 85%, or 87%, or 90%, or 91%, or 92%, or 93%, or 94%, or 95%, or 96%, or 97%, or 98%, or 99% sequence identity to SEQ ID No. 2, or can be SEQ ID No. 2 itself.
- An AOX protein which has at least 80% sequence identity to SEQ ID NO. 2 can be an AOX protein which has at least 80% sequence identity to both SEQ ID NO. 2 and the AOXIB protein from Arabidopsis thaliana, such as an AOX protein having 87% sequence identity to both SEQ ID NO. 2 and the AOXIB protein from Arabidopsis thaliana.
- a nucleic acid which has "at least 80% sequence identity to SEQ ID NO. 1" can be a nucleic acid with 80%, or 83%, or 85%, or 87%, or 90%, or 91%, or 92%, or 93%, or 94%, or 95%, or 96%, or 97%, or 98%, or 99% sequence identity to SEQ ID No. 1, or can be SEQ ID No. 1 itself.
- a nucleic acid which has at least 80% sequence identity to SEQ ID NO. 1 can be a nucleic acid which has at least 80% sequence identity to both SEQ ID NO. 1 and the AOXIB coding sequence from Arabidopsis thaliana, such as a nucleic acid having 83% sequence identity to both SEQ ID NO. 1 and the AOXIB coding sequence from Arabidopsis thaliana.
- mutant alleles or genes can be obtained by addition, substitution, insertion or deletion of one or more nucleotides with respect to the AOX sequences according to the invention.
- Increasing expression of a nucleic acid encoding an AOX1 protein can comprise increasing expression on a whole plant level.
- increasing expression of a nucleic acid encoding an AOX1 protein can comprise increasing expression in specific plant parts or tissues, such as seeds, or specific seed tissues.
- Increasing expression of a nucleic acid encoding an AOX1 protein can conveniently be achieved by heterologously expressing a nucleic acid encoding AOX1.
- expression of the endogenous AOX1 encoding gene can be increased through, for example, T-DNA activation tagging, or by targeted genome engineering technologies in which, for example, the endogenous promoter is modified such that it drives higher levels of expression, or in which the endogenous promoter is replaced with a stronger promoter.
- T-DNA activation tagging is a method to activate endogenous genes by random insertion of a T-DNA carrying promoter or enhancer elements, which can cause transcriptional activation of flanking plant genes.
- the method can consist of generating a large number of transformed plants or plant cells using a specialized T-DNA construct, followed by selection for the desired phenotype.
- Targeted genome engineering refers to generate intended and directed modifications into the genome. Such intended modifications can be insertions at specific genomic locations, deletions of specific endogenous sequences, and replacements of endogenous sequences. Targeted genome engineering can be based on homologous recombination. Targeted genome engineering to increase expression of the AOX1 endogene can consist of insertion of a promoter, stronger than the endogenous promoter, in front of the AOX1 coding sequence, or insert an enhancer to increase promoter activity, or insert elements enhancing RNA stability or enhancing translation of the encoded mRNA.
- a method for increasing oil content, such as seed oil content, and/or seed yield, such as Thousand Kernel Weight, in plants comprising increasing expression of a nucleic acid encoding an AOXl protein comprising the steps of-'
- nucleic acid encoding an AOXl protein
- said plant-expressible promoter is a constitutive promoter, and in yet another embodiment, said constitutive promoter is the 35S promoter. In a further embodiment, said plant-expressible promoter is a seed-specific promoter.
- Said plant cell can be provided with a chimeric gene using methods well-known in the art. Methods to provide plant cells with a chimeric gene are not deemed critical for the current invention and any method to provide plant cells with a chimeric gene suitable for a particular plant species can be used. Such methods are well known in the art and include Agrobacteriumr mediated transformation, particle gun delivery, microinjection, electroporation of intact cells, polyethylene glycol -mediated protoplast transformation, electroporation of protoplasts, liposome-mediated transformation, silicon-whiskers mediated transformation etc. Said chimeric gene may be stably integrated into the genome of said plant cell, resulting in a transformed plant cell. The transformed plant cells obtained in this way may then be regenerated into mature fertile transformed plants.
- plant-expressible promoter means a DNA sequence that is capable of controlling (initiating) transcription in a plant cell. This includes any promoter of plant origin, but also any promoter of non-plant origin which is capable of directing transcription in a plant cell, i.e., certain promoters of viral or bacterial origin such as the CaMV35S (Harpster et al. (1988) Mol Gen Genet.
- the subterranean clover virus promoter No 4 or No 7 (WO9606932), or T-DNA gene promoters but also tissue-specific or organ-specific promoters including but not limited to seed-specific promoters (e.g., WO89/03887), organ-primordia specific promoters (An et al. (1996) Plant CeZ/ 8(l):i5-30), stem-specific promoters (Keller et al, (1988) EMBO J. 7(12): 3625-3633), leaf specific promoters (Hudspeth et al. (1989) Plant Mol Biol.
- mesophyl-specific promoters such as the light-inducible Rubisco promoters
- root-specific promoters such as the light-inducible Rubisco promoters
- tuber-specific promoters such as the tuber-specific promoters
- vascular tissue specific promoters such as the vascular tissue specific promoters (Peleman et al. (1989) Gene 84: 359-369)
- stamen-selective promoters WO 89/10396, WO 92/13956
- dehiscence zone specific promoters WO 97/13865
- heterologous promoter refers to a promoter which is not normally associated in its natural context with the coding DNA region operably linked to it in the DNA molecules according to the invention. Accordingly, a heterologous promoter excludes the naturally associated promoter. A heterologous promoter to the nucleic acid encoding an AOX1 protein is therefore a promoter other than the AOX1 promoter.
- a chimeric gene comprising a heterologous promoter and a nucleic acid encoding an AOX1 protein can also be referred to as an artificial construct.
- Constitutive promoters are well known in the art, and include the CaMV35S promoter (Harpster et al. (1988) Mol Gen Genet. 212(l):l82-90), Actin promoters, such as, for example, the promoter from the Rice Actin gene (McElroy et al., 1990, Plant Cell 2:163), the promoter of the Cassava Vein Mosaic Virus (Verdaguer et al., 1996 Plant Mol. Biol. 31: H29), the GOS promoter (de Pater et al., 1992, Plant J.
- Seed specific promoters are well known in the art, including the USP promoter from Vicia faba described in DE10211617; the promoter sequences described in WO2009/073738; promoters from Brassica napus for seed specific gene expression as described in WO2009/077478; the plant seed specific promoters described in US2007/0022502; the plant seed specific promoters described in WO03/014347; the seed specific promoter described in WO2009/125826; the promoters of the omega_3 fatty acid desaturase family described in WO2006/005807 and the like.
- a "transcription termination and polyadenylation region” as used herein is a sequence that drives the cleavage of the nascent RNA, whereafter a poly(A) tail is added at the resulting RNA 3' end, functional in plants.
- Transcription termination and polyadenylation signals functional in plants include, but are not limited to, 3'nos, 3'35S, 3'his and 3'g7.
- seed oil plants refers to plants producing oil in their seeds.
- seed oil plants are Brassica oilseeds (including Brassica napus, Brassica campestris (rapa), Brassica juncea or Brassica carinata), sunflower, safflower, soybean, palm, Jatropha, flax, crambe, camelina, corn, sesame, castor beans.
- Brassicaceae plants are plants which according to the current botanical standard would be classified into the family Brassicaceae (formerly Cruciferaeae) .
- Brassicaceae (Mustard) family members are easy to distinguish. They are annual or perannual plants with alternate leaves without stipules and possess simple inflorescence or branched racemes.
- the flowers are bilaterally symmetrical and hypogynous. With few exceptions, the flowers have 4 petals (free) alternating with 4 sepals (free) >' 6 stamens (4 long and 2 short), an ovary of 2 united carpels with parital placenta, 2 locular through the formation of a membranous false septum ; fruit is a dehiscent capsule opening by 2 valves.
- Brassicaceae include inter alia the following genera : Sisymbrium, Descurania, Alliaria, Arabidopsis, Myagrum, Isatis, Bunia, Erysium, Hesperis, Malcolmia, Matthiola, Chorispora, Euclidium, Barbarea, Rorippa, Armoracia, Nasturtium, Dentaria, Cardamine, Cardaminopsis, Arabis, Lunaria, Alyssum, Berteroa, Lobularia, Draba, Erophila, Cochlearia, Camelina, Neslia, Capsella, Hornungia, Thlsapi, Iberis, Lepidium, Cardaria, Coronopus, Subularia, Conringia, Diplotaxis, Brassica, Sinapsis, Eruca, Erucastrum, Coincya, Hirschfeldia, Cakile, Rapistum, Crambe, Enarthrocarpus, Rhaphanus and Clausia.
- plants are provided that are obtained by the methods according to the invention.
- Another embodiment provides seeds from plants obtained by the methods according to the invention.
- oil from the seeds of plants obtained by the methods according to the invention is provided.
- the obtained plants can be used in a conventional breeding scheme to produce more plants with the same characteristics or to introduce the characteristic of increased expression of a nucleic acid encoding an AOXl protein according to the invention in other varieties of the same or related plant species, or in hybrid plants.
- the obtained plants can further be used for creating propagating material.
- Plants according to the invention can further be used to produce gametes, seeds (including crushed seeds and seed cakes), embryos, either zygotic or somatic, progeny or hybrids of plants obtained by methods of the invention. Seeds obtained from the obtained plants according to the invention are also encompassed by the invention.
- Creating propagating material relates to any means know in the art to produce further plants, plant parts or seeds and includes inter alia vegetative reproduction methods (e.g. air or ground layering, division, (bud) grafting, micropropagation, stolons or runners, storage organs such as bulbs, corms, tubers and rhizomes, striking or cutting, twin- scaling), sexual reproduction (crossing with another plant) and asexual reproduction (e.g. apomixis, somatic hybridization).
- vegetative reproduction methods e.g. air or ground layering, division, (bud) grafting, micropropagation, stolons or runners, storage organs such as bulbs, corms, tubers and rhizomes, striking or cutting, twin- scaling
- sexual reproduction crossing with another plant
- asexual reproduction e.g. apomixis, somatic hybridization
- a further object of the invention is an isolated DNA encoding the Brassica napus AOXl protein of SEQ ID No. 2, such as an isolated DNA consisting of SEQ ID No. I.
- Yet a further object of the invention provides an isolated Brassica napus AOXl protein consisting of the nucleotide sequence of SEQ ID No. 2.
- isolated DNA refers to DNA not occurring in its natural genomic context, irrespective of its length and sequence. Isolated DNA can, for example, refer to DNA which is physically separated from the genomic context, such as a fragment of genomic DNA.
- Isolated DNA can also be an artificially produced DNA, such as a chemically synthesized DNA, or such as DNA produced via amplification reactions, such as polymerase chain reaction (PCR) well-known in the art.
- Isolated DNA can further refer to DNA present in a context of DNA in which it does not occur naturally.
- isolated DNA can refer to a piece of DNA present in a plasmid.
- the isolated DNA can refer to a piece of DNA present in another chromosomal context than the context in which it occurs naturally, such as for example at another position in the genome than the natural position, in the genome of another species than the species in which it occurs naturally, or in an artificial chromosome.
- isolated protein refers to a protein not occurring in its natural cellular context, irrespective of its length and sequence.
- An isolated protein can, for example, refer to a protein present in a plant cell in which it does not naturally occur.
- An isolated protein can also be a protein isolated from a plant cell in which it naturally occurs or in which it does not naturally occur.
- an isolated protein can be a protein produced in a heterologous expression system well known in the art, such as a plant expression system, a yeast expression system, a microbial expression system, a mammalian expression system, where the isolated protein can reside within the cells of said expression system, can be extracted from the cells of said expression system, or can be purified from said expression system.
- an isolated protein can be produced in an in vitro system, from which it can be extracted and purified.
- the invention further provides a chimeric gene comprising the following operably linked nucleic acid molecules:
- nucleic acid encoding an AOX1 protein containing at least 60% sequence identity to SEQ ID No. % and optionally
- said AOX1 protein contains at least 80% sequence identity to SEQ ID No. 2
- said nucleic acid encoding an AOX1 protein contains at least 80% sequence identity to SEQ ID No. 1.
- said plant-expressible promoter is a constitutive promoter, such as the 35S promoter, and in yet a further embodiment, said plant-expressible promoter is a seed-specific promoter.
- the invention further relates to the use of the chimeric genes or of the isolated DNA according to the invention to increase plant seed oil content and/or to seed yield such as Thousand Kernel Weight.
- the invention further provides methods for producing oil, comprising harvesting seeds from the plants according to the invention and extracting the oil from said seeds.
- the invention provides a method of producing food or feed such as oil, meal, grain, starch, flour or protein, or an industrial product such as biofuel, fiber, industrial chemicals, a pharmaceutical or a neutraceutical, comprising obtaining the plant according to the invention or a part thereof, and preparing the food, feed, or industrial product from the plant or part thereof.
- nucleic acid or protein comprising a sequence of nucleotides or amino acids
- a chimeric gene comprising a DNA region which is functionally or structurally defined, may comprise additional DNA regions etc.
- SEQ ID NO: Brassica napus AOX1 coding sequence.
- SEQ ID NO: 3 BnAOXl forward primer.
- SEQ ID NO: 4 BnAOXl reverse primer.
- SEQ ID NO: 5 AtAOXlB forward primer.
- SEQ ID NO: 7 T7 primer.
- SEQ ID NO: 8 35S promoter specific primer.
- the applicants of the present invention have screened out a set of genes including BnAOXl gene, which are differentially expressed not only between two kinds of Brassica napus parent lines but also between the extremely segregated lines of F2 generation, by analyzing the differences in gene expression between two kinds of parent lines with significantly different oil-content as well as between the mixed samples of the segregated lines of F2 generation exhibiting significantly different oil-content.
- BnAOXl gene which are differentially expressed not only between two kinds of Brassica napus parent lines but also between the extremely segregated lines of F2 generation, by analyzing the differences in gene expression between two kinds of parent lines with significantly different oil-content as well as between the mixed samples of the segregated lines of F2 generation exhibiting significantly different oil-content.
- the applicants have cloned the full-length gene, constructed an expression vector comprising said full-length gene, and transformed thereof into the model plant Arabidopsis thaliana.
- the respiratory metabolism- associated gene BnAOXl from Brassica napus is useful in increasing the oil content and the
- a high-oil content Brassica napus line zy036 (oil content thereof being 51%) was crossed with a low-oil content Brassica napus line Y817 (oil content thereof being 35%) in order to establish a population of F2 generation.
- a total of 169 F2 offspring plantlets was used as the starting material.
- the silique (with pod shells and ovules) were collected respectively from each of F2 plants about 25 days post blossom; and the oil content was determined in mature seeds from the individual plants.
- the silique from individual plants having a determined oil content of greater than 47% and of less than 38.5% were weighed and mixed in equal amount of 200 mg respectively to constitute two mixed samples with two extreme oil contents, which samples are coded by H and L, respectively.
- 11 plants had an oil content of greater than 47% and 11 plants had an oil content of less than 38.5%. There was difference of 11.1% between the average oil contents of the two mixed samples.
- Genes expressed in the two parents and two mixed samples were assayed. The genes whose expression levels were different between the parents as well as between the mixed samples of F2 generations were identified, from which the gene BnAOXl originates.
- zy036 and Y817 used in the study had been established by the technicians of the biotechnical breeding team in the Oil Crops Research Institute (OCRI) of the Chinese Academy of Agricultural Sciences (CAAS) under the direction of the researcher Wang Hanzhong.
- the zy036 line is developed by establishing a recurrent selection population consisted of Zhongshuang No.4, Zhongshuang No.7, Zhongshuang No.9, Huashuang No.3, and Youyan No.9, performing recurrent selections of two generations, followed by recurrent selection of the third generation by microspore culture of excellent individual plants therefrom, and eventually conducting high oil content-directed selection.
- Y817 is a maintenance line for the hybrid cultivar Zhongyou hybrid No.l (Study on techniques about seed production of Zhouyou Hybrid No.l and their utilization, rural Economy and Science -Technology, (10), 2001).
- Brassica napus genomic sequences homologous to the AOX1 gene have been identified by means of the sequence of Arabidopsis thaliana AOX1B gene (AtAOXlB; Accession Number At3g22360) and an in-house sequence database, then spliced them together, and designed primers flanking the coding regions of the gene of interest on the basis of the spliced sequence.
- RT-PCR amplification was performed using the cDNA first strand from the parent zy036 as template. The amplified fragment was sequenced, to obtain the coding region sequence of BnAOXl gene.
- a protein is disclosed, the base sequence encoding said protein is the nucleotide sequence shown in SEQ ID NO: 1.
- a protein is disclosed, the sequence thereof being the amino acid sequence shown as SEQ ID NO: 2.
- primers for amplifying the sequence of the homologous gene AtAOXlB in Arabidopsis thaliana were designed by use of gene sequences (At3g22360).
- Primers for amplification in Arabidopsis thaliana were as follows: AtAOXlB forward primer: [5'-atgatgatgagtcgtcgcta-3'] (SEQ ID No. 5) and reverse primer: [5'-tcaatgatatccaatgggagc-3'] (SEQ ID No. 6), for use in direct amplification from cDNA of the Arabidopsis thaliana 10-dayold siliques.
- RNA extraction extraction of RNA with TRIZOL TM Kit: grind 100 mg of raw material in liquid nitrogen.
- step C The mixture from step B is centrifuged at 4°C at 12000g for 15min. The resultant supernatant is transferred into a new tube. 500 ⁇ of isopropanol is added and mixed well. Then, the resulting mixture is left at RT for 15 min.
- the resulting mixture is centrifuged at 4°C at 7500g for 7 min. The resultant supernatant is discarded and the RNA pellet is air-dried.
- the air-dried RNA pellet is dissolved in DEPC-H 2 O.
- Reverse transcription of the first strand cDNA is performed with Revert- Aid H Minus First Strand cDNA Synthesis Kit (Fermentas), with operation following the instruction of the kit used.
- BnAOXl and AtAOXlB genes are obtained.
- the sequences of BnAOXl and AtAOXlB genes are as follows: a respiratory metabolism-associated gene BnAOXl from Brassica napus, encoding the BnAOXl protein, the base sequence thereof is the nucleotide sequence shown in SEQ ID NO: V, the BnAOXl protein, the sequence of the protein is the amino acid sequence as shown in SEQ ID NO: 2, and gene sequences of Arabidopsis as published (database accession number At3g22360).
- the method for using the cloned gene comprises the following steps:
- the method for cloning the Brassica napus gene according to the present invention is the one commonly used in the art, such as, CTAB protocol is used to extract DNA from plant leaves.
- CTAB protocol is used to extract DNA from plant leaves.
- the methods for extracting mRNA are various and have been well-established, such as, TRIzol Reagent Protocol from Invitrogen Co. or
- cDNA library construction is also a conventional technique in molecular biology. Methods for constructing and transforming the vector according to the present invention into a plant are also those commonly used in the art.
- the involved plasmids (the entry vector PCR8/GW/TOPO and the expression vector plasmid pEarley gate 100) in the methods, host cells for transformation (e.g., Agrobacterium tumefaciens GV3101), and reagents (sucrose, etc.,) used are commercially available.
- the method most commonly used for polymorphic analysis of molecular marker is polyacrylamide gel electrophoresis in which the reagents used are commercially available, such as, acrylamide, methylene bisacrylamide, etc.
- the gene sequence obtained by PCR amplification was ligated into the TOPO entry vector (Invitrogen Co.), then the obtained vector was transformed into DH5a competent cells (Invitrogen Co.). Screening of positive colonies with spectinomycin was performed.
- the plasmid of interest with the forwardly ligated insert was identified by PCR amplification using a vector-specific primer (T7 primer, TAATACGACTCACTATAGGG) (SEQ ID No. 7) and a gene-specific primer (the forward primer for the target gene, the sequence of which was shown in Example l).
- T7 primer TAATACGACTCACTATAGGG
- a gene-specific primer the forward primer for the target gene, the sequence of which was shown in Example l.
- the plasmid of interest was mini-prepared, then recombined into the vector pEarleygate 100 (Invitrogen Co.), and finally transformed into DH5a competent cells.
- Example 2 The expression vector prepared in Example 2 was introduced into Agrobacterium tumefaciens GV3101 and further into Arabidopsis thaliana plants, using the following steps ⁇
- the treated plant was grown overnight with avoidance of light and then cultivated normally until producing seed. The seeds were harvested for further screening and identification.
- the vernalized Arabidopsis seeds were seeded in artificial soil irrigated with the saturated Hyponex NO.2 (commercially available) nutrient solution and covered with plastic wrap. Two days later, light was given, and three days later, the plastic wrap was removed.
- Conditions in the artificial cultivation chamber were as follows : Relative humidity: 80%, constant temperature of 20-24°C, light intensity of 80-200 umol M 2 /S, light cycle: 8h of Dark, 16 h of Light. After about one week, a herbicide (glyphosate) was sprayed to screen positive plants.
- glyphosate glyphosate
- step C the resulting mixture from step C was centrifuged at 12000 rpm at room temperature for 15 min. DNA pellet was washed by adding 200 ⁇ of 70% (vol/vol) ethanol.
- step E the resultant from step E was centrifuged at 12000 rpm at room temperature for 15 min. Ethanol was discarded. The tube with the DNA pellet was placed inversely on a paper towel until the ethanol was volatilized completely.
- the extracted DNA pellet in the tube was dissolved in 100 ⁇ of sterile water.
- the DNA concentration was estimated with a spectrometer or by electrophoresis.
- Formulation ratio for the PCR reaction mixture was the same as that in identification of the plasmid by PCR, and based on the sequence of 35S promoter in the plant expression vector and the sequences of the reverse primers for the BnAOXl and AtAOXlB genes: [5'-tcaatgatccaattggag-3'] (SEQ ID No. 4) and [5'-tcaatgatatccaatgggagc-3'] (SEQ ID No. 6), respectively, the time and temperature for the reaction was as follows: 94°C 3 min, 30 cycles of 94°C 45s, 59°C 45s, 72°C 2 min 30s, then 72°C 5 min.
- Example 5 Determination of seed oil content and thousand kernel weight of the transgenic Arabidopsis thaliana
- the transgenic homozygous lines were grown at 21-23 °C in a greenhouse. The seeds were harvested and then tested the changes in the oil content and thousand kernel weight (Fig. 3). The overall phenotype of the transgenic Arabidopsis thaliana plant overexpressing BnAOXl gene or AtAOXlB gene was not significantly different from that of the wild type Arabidopsis thaliana control. After harvest of the seeds, it was found that the seeds from the transgenic plant were significantly larger than those from the wild type control ( Figure 3). The seed oil content was determined by pulse nuclear magnetic resonance spectrometer.
- Table 1 Determination of the oil content and the thousand kernel weight (TKW) in Arabidopsis thaliana overexpressing BnAOXl (BnAOXl- 1 to BnAOXl-4) or AtAOXlB(AtAOXl-l to AtAOXl-4).
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Abstract
The sequences of the AOX1 gene and protein from Brassica napus are provided. The use of AOX1 gene to increase seed oil content and thousand kernel weight in plants is also provided..
Description
RESPIRATORY METABOLISM-ASSOCIATED GENE BnAOXl FROM BRASSICA
NAPUSANO USE THEREOF
FIELD OF THE INVENTION
The present invention relates to the field of plant genetic engineering, more particularly to a respiratory metabolism-associated enzyme BnAOXl gene and protein, as well as to the use of the respiratory metabolism-associated enzyme BnAOXl gene and protein to increase the yield and oil content of oil crops.
BACKGROUND OF THE INVENTION
Rapeseed is one of the most important sources for edible vegetable oil and forage protein, as well as the most important raw material for biodiesel in Europe. Rape (Brassica napus) is the oil crop of the largest acreage in China, and is the fifth-largest crop in China following rice, wheat, maize, and soybean. Rapeseed oil is the major edible oil for Chinese residents, accounting for more than 40% of the total domestic vegetable oil consumption. As the biggest country in consuming vegetable oil in the world, however, China has a self-supporting vegetable oil of less than 40%. To meet the conflicting need, in addition to expansion of planting area, increasing rape oil content and rape yield are the most efficient ways to increase rape oil yield per unit planting area. High yield of rape can significantly improve the benefit from rape production and increase the total profit of rapeseed.
There are several pathways for the mitochondrial electron transport chain in plants, mainly comprising the cytochrome main pathway and the cyanide -resistant alternative pathway. Cyanide-resistant respiration (alternative pathway) refers to a respiratory pathway insensitive to cyanide. An alternative oxidase (AOX) is the terminal oxidase of the cyanide-resistant respiratory pathway in plant mitochondrial respiratory chain, and is extensively found in higher plants and some of fungi and algae. While the alternative oxidase is a terminal oxidase of the alternative pathway, its endogenous substrates include the reduced ubiquinone and O2. The respiratory
electron flow of the alternative pathway branches off at ubiquinone in the main path (cytochrome pathway) and bypasses two ATP-formation sites of Complex III and IV. Four electrons from the electron flow are transferred directly by AOX to an oxygen molecule, which is reduced to H2O, while the energy not used for ATP synthesis is lost in the form of heat release.
The alternative oxidase is a di-iron carboxylate protein. It has structural features common to other di-iron carboxylate proteins and a function of eliminating molecular oxygen. More importantly, it can also regulate actively the operation degree of cyanide resistant respiratory pathway by alternating the structure itself, thus further regulating various aspects of the cellular metabolism and functionality, in order to adapt to variable environmental conditions, enhance the plants' adaptation to various adverse environments and regulate growth rate in plants. The alternative oxidase is involved in cellular apoptosis and photosynthesis. Regulation of the AOX activity is affected by various factors. Environmental stresses, plant injury, frost, drought, osmotic pressure, pathogenic bacteria, etc. may induce the expression of AOX. Salicylic acid (SA), hydrogen peroxide, ethylene, and the main respiratory chain inhibitors may also induce the expression of AOX in plants. Cyanide-resistant respiration activity and AOX expression level are higher in the spadix of the thermogenic plant. In the non-thermogenic plant, the AOX expression level is associated with the developmental stages. For example, AOX is expressed during senescence and fruit maturation.
AOX regulates energy metabolism. When the energy metabolism is saturated, AOX pathway releases the energy by way of heat elimination and maintains the electron transport and TCA. "The energy overflow hypothesis" put forward by Lambers (1982, Physiology Plant 55:478) states that transferring of electrons through AOX may enable TCA cycle and glycolysis to proceed when the main respiratory chain activity is inhibited or the reduction power within a cell is running high. The AOX activity can be activated by pyruvate, a substrate in TCA cycle, indicating that transfer of part of the electrons through the AOX pathway can be induced when the substrate concentration in TCA cycle is too high. Environmental changes result in differences in the AOX
expression, which has effects both on mitochondrial functions and on cellular functions outside the mitochondria. Oxygen stress induces the expression of the AOX to effect anti- oxidation, that is, Oxidation mediated by the AOX can decrease reactive oxygen species (ROS) generated by the main respiratory chain when the cytochrome pathway is inhibited. The ROS level is decreased when AOX is over-expressed in a transgenic tobacco plant, while the ROS level is increased when AOX is not over-expressed in the transgenic tobacco plant. In measuring the thermal respiration, Hansen et al (2002, Thermochim Acta 388:415) found that environmental changes can alter the growth rate of a plant, that is, AOX plays a balancing role in growth kinetics of a plant. Heat released through AOX in the thermogenic plant may enable pollens to emanate fragrance, thus attract insect vectors (Meeuse, (1975) Annu Rev Plant Physiol 26:117). Expression of AOX in non-thermogenic plants is not associated to such a thermogenesis (Borecky and Vercesi (2005) Bioscience Reports 25:271). AOX can effectively control respiration rate and maintain energy homeostasis in cells to ensure normal growth of a plant encountering environmental changes (Hansen et al (2002) Thermochim Acta 388:415). AOX not only allows Arabidopsis thaliana to germinate at low temperatures, but also can prevent the generation of peroxides by plant tissues under adverse conditions, to avoid adverse effect on various cellular functions (Fiorani et al (2005) Plant Physiology 139:1795). AOX plays a key role in the cytoplasm and in some of the carbon metabolism pathways (Umbach et al (2005) Plant Physiol 139:1806). A variety of environmental stresses can alter the proceeding of the cyanide-resistant pathway in plants. However, those studies in this regard are still very superficial, and the signal regulation mechanism and physiological significance of said proceeding is unclear yet.
The current invention provides methods and means to improve plant seed yield and seed oil content by increasing the expression of AOX1, as will become apparent from the following description, examples, drawings and claims provided herein.
SUMMARY OF THE INVENTION
In a first embodiment of the invention, a method is provided for increasing oil
content, such as seed oil content, and/or seed yield, such as Thousand Kernel Weight in plants, comprising increasing expression of a nucleic acid encoding an AOXl protein. In a further embodiment, said AOXl protein has at least 60% sequence identity to SEQ ID No. 2. In a further embodiment, said AOXl protein has at least 80% sequence identity to SEQ ID No. 2. In yet a further embodiment, said nucleic acid has at least 80% sequence identity to SEQ ID NO. 1.
In yet another embodiment of the invention, a method is provided for increasing seed oil content and/or seed yield, such as Thousand Kernel Weight in plants comprising increasing expression of a nucleic acid encoding a protein with has at least 80% sequence identity to the AOX1B protein from Arabidopsis thaliana. In yet a further embodiment, said nucleic acid has at least 80% sequence identity to the AOX1B coding sequence from Arabidopsis thaliana.
In a further embodiment of the invention, a method is provided for increasing oil content and/or seed yield, such as Thousand Kernel Weight in plants comprising increasing expression of a nucleic acid encoding an AOXl protein comprising the steps of
a) providing a plant cell with a chimeric gene comprising the following operably linked nucleic acid molecules :
i) a heterologous plant-expressible promoter;
ii) said nucleic acid encoding an AOXl protein; and optionally
iii) a DNA region involved in transcription termination and polyadenylation,' b) regeneration of said plant cell into a plant.
In a further embodiment, said plant-expressible promoter is a constitutive promoter, and in yet another embodiment, said constitutive promoter is the 35S promoter. In a further embodiment, said plant-expressible promoter is a seed-specific promoter.
It is a further aspect of the invention to provide methods according to the invention for increasing seed oil content and/or seed yield, such as Thousand Kernel Weight in seed oil plants, and it is yet another embodiment of the invention to provide methods
for increasing seed oil content in Brassicaceae plants.
In a further embodiment, plants are provided that are obtained by the methods according to the invention. Another embodiment provides seeds from plants obtained by the methods according to the invention. In yet another embodiment, oil from the seeds of plants obtained by the methods according to the invention are provided.
A further object of the invention is to provide an isolated DNA encoding the Brassica napus AOXl protein of SEQ ID No. 2, such as an isolated DNA consisting of SEQ ID No. 1. Yet a further object of the invention provides an isolated Brassica napus AOX protein consisting of the nucleotide sequence SEQ ID No. 2.
The invention further provides a chimeric gene comprising the following operably linked nucleic acid molecules:
a) a heterologous plant-expressible promoter,'
b) a nucleic acid encoding an AOXl protein containing at least 60% sequence identity to SEQ ID No. 2; and optionally
c) a DNA region involved in transcription termination and polyadenylation.
In another embodiment, said AOXl protein contains at least 80% sequence identity to SEQ ID No. 2, whereas in yet another embodiment said nucleic acid encoding an AOXl protein contains at least 80% sequence identity to SEQ ID No. 1. In a further embodiment, said plant-expressible promoter is a constitutive promoter, such as the 35S promoter, and in yet a further embodiment, said plant-expressible promoter is a seed-specific promoter.
The invention further relates to the use of the chimeric genes or of the isolated DNA according to the invention to increase plant seed oil content and/or Thousand Kernel Weight.
The invention further provides methods for producing oil, comprising harvesting seeds from the plants according to the invention and extracting the oil from said seeds. In a further aspect, the invention provides a method of producing food or feed such as oil, meal, grain, starch, flour or protein, or an industrial product such as biofuel, fiber, industrial chemicals, a pharmaceutical or a neutraceutical, comprising obtaining the
plant according to the invention or a part thereof, and preparing the food, feed, or industrial product from the plant or part thereof.
BRIEF DESCRIPTION OF THE DRAWINGS
Figure 1. Schematic representation of an Arabidopsis expression vector for a rape respiratory metabolism-associated gene BnAOXl.
Figure 2. PCR identification of the Arabidopsis thaliana Tl generation carrying a rape respiratory metabolism- associated gene BnAOXl transgene.
Figure 3. Comparison of the seed sizes between the transgenic plant carrying a rape respiratory metabolism-associated gene BnAOXl and the wild type control, wherein seeds from the wild type control are shown in Fig.3A, and those from the transgenic line are shown in Fig. 3B.
DETAILED DESCRIPTION
The current invention is based on the finding that overexpression of AOXl in Arabidopsis results in increased seed oil content and increased Thousand Kernel Weight.
In a first embodiment of the invention, a method is provided for increasing oil content, such as seed oil content, in plants, and/or seed yield, such as Thousand Kernel Weight, comprising increasing expression of a nucleic acid encoding an AOXl protein. In yet a further embodiment, said AOXl protein has at least 60% sequence identity to SEQ ID No. 2. In yet a further embodiment, said AOXl protein has at least 80% sequence identity to SEQ ID No. 2. In yet a further embodiment, said nucleic acid has at least 80% sequence identity to SEQ ID NO. 1. In yet another embodiment of the invention, said AOXl protein has at least 80% sequence identity to the AOXIB protein from Arabidopsis thaliana. In yet a further embodiment, said nucleic acid has at least 80% sequence identity to the AOXIB coding sequence from Arabidopsis thaliana.
Increasing oil content, such as seed oil content, in plants, and/or seed yield, such as Thousand Kernel Weight, as used herein, can be increasing oil content, or increasing
seed yield, or increasing both oil content and seed yield.
At least 60% sequence identity can be, for example, at least 60%, or at least 65%, or at least 70%, or at least 75%, or at least 80%, or at least 85%, or at least 90%, or at least 95%, or at least 97%, or at least 98%, or at least 99%, or 100% sequence identity.
At least 80% sequence identity can be, for example, at least 80%, or at least 83%, or at least 85%, or at least 87%, or at least 90%, or at least 95%, or at least 97%, or at least 98%, or at least 99%, or 100% sequence identity.
The methods and means described herein are believed to be suitable for all plant cells and plants, both dicotyledonous and monocotyledonous plant cells and plants including but not limited to cotton, Brassica, oilseed rape, wheat, corn or maize, barley, sunflowers, rice, oats, sugarcane, soybean, vegetables (including chicory, lettuce, tomato), tobacco, potato, sugarbeet, papaya, pineapple, mango, Arabidopsis thaliana, but also plants used in horticulture, floriculture or forestry. Especially suited are oil producing plants such as rapeseed {Brassica spp), flax {Linum usitatissimuni) , safflower {Carthamus tinctorius), sunflower {Helianthus annuus), maize or corn {Zea mays), soybean {Glycine max), mustard {Brassica spp. and Sinapis alba), crambeCCra/Mbe abyssinica), eruca {Eruca saiva), oil palm {Elaeis guineeis), cottonseed {Gossypium spp), groundnut {Arachis hypogaea) , coconut {Cocus nucifera) , castor bean {Ricinus communis), coriander {Coriandrum sativum), squash {Cucurbita maxima), Brazil nut {Bertholletia excelsa) or jojoba {Simmondsia chinensis) gold-of-pleasure {Camelina sativa), purging nut {Jatropha curcas), Echium spp., calendula {Calendula officinalis), olive {Olea europaea), wheat {Triticum spp.), oat {Avena spp.), rye {Secale cereale), rice {Oryza sativa), Lesquerella spp., Cuphea spp., meadow foam {Limnanthes alba), avocado {Persea Americana), hazelnut {Corylus), sesame {Sesamum indicum), safflower {Carthamus tinctorius), tung tree (Aleurites fordnV, poppy {Papaver somniferum) tobacco {Nicotiana spp).
The methods and means described herein can also be used in algae such as Scenedesmus dimorphus, Euglena gracilis, Phaeodactylum tricornutum, Pleurochrysis carterae, Prymnesium parvum, Tetraselmis chui, Tetraselmis suecica, Isochrysis
galbana, Nannochloropsis salina, Botryococcus braunii, Dunaliella tertiolecta, Nannochloris spp. or Spirulina spp.
As used herein, a "Brassica plant" is a plant which belongs to one of the species Brassica napus, Brassica rapa (or campestris) , or Brassica juncea. Alternatively, the plant can belong to a species originating from intercrossing of these Brassica species, such as B. napocampestris, or of an artificial crossing of one of these Brassica species with another species of the Cruciferacea. A Brassica oilseed plant refers to any one of the species Brassica napus, Brassica rapa (or campestris), Brassica carinata, Brassica nigra or Brassica juncea.
An increase in seed oil content can be an increase with at least 2%, or at least 5%, or at least 10%, or at least 15%, or at least 20%, or at least 25%, or at least 30%, or at least 40%, or at least 50%. Said increase is an increase with respect to levels as obtained in control plants.
"Thousand Kernel Weight" as used herein, also "TKW", refers to the weight in grams of 1000 seeds. An increased TKW may result from an increase in seed size and/or an increase in seed weight.
An increase in Thousand Kernel Weight can be an increase with at least 2%, or at least 5%, or at least 10%, or at least 15%, or at least 20%, or at least 25%, or at least 30%, or at least 40%, or at least 50%. Said increase is an increase with respect to Thousand Kernel Weight as obtained in control plants.
The "control plant" as used herein is generally a plant of the same species which has wild-type levels of AOXl. "Wild-type levels of AOXl" as used herein refers to the typical levels of AOXl protein in a plant as it most commonly occurs in nature. Said control plant has thus not been provided either with a nucleic acid molecule encoding AOXl, or with a nucleic acid activating expression of the endogenous AOXl, such as a T-DNA activation tag or a promoter with stronger activity than the endogenous promoter.
The AOXl protein refers the Alternative Oxidase protein, which is the terminal oxidase of the cyanide -resistant respiratory pathway in the plant mitochondrial
respiratory chain. Endogenous substrates of AOX1 include reduced ubiquinone and O2. The respiratory electron flow of the alternative pathway branches off at ubiquinone in the main path (cytochrome pathway) and bypasses two ATP-formation sites of Complex III and IV. Four electrons from the electron flow are transferred directly by AOX1 to an oxygen molecule, which is reduced to H2O, while the energy not used for ATP synthesis is lost in the form of heat release. AOX1 is a di-iron carboxylate protein. It has structural features common to other di-iron carboxylate proteins and a function of eliminating molecular oxygen.
An AOX1 protein is a protein that contains at least 50%, or at least 55%, or at least 60%, or at least 65%, or at least 70%, or at least 75%, or at least 80%, or at least 85%, or at least 90%, or at least 95%, or at least 98%, or at least 99% sequence identity to any of the AOX proteins as described in this application.
Examples of AOX proteins are the Arabidopsis thaliana AOXl proteins AOX1A (AT3G22370), AOXIB (AT3G22360), AOX1C (AT3G27620), and AOX1D (AT1G32350).
The "AOXIB protein from Arabidopsis thaliana", also AtAOXlB, as used herein refers to the protein with accession number At3g22360, whereas the "AOXIB coding sequence from Arabidopsis thaliana", also AtAOXlB, refers to the coding sequence with accession number At3g22360.
Based on the available sequences, the skilled person can isolate genes encoding AOXl other than the genes mentioned above. Homologous nucleotide sequence may be identified and isolated by hybridization under stringent conditions using as probes identified nucleotide sequences.
"High stringency conditions" can be provided, for example, by hybridization at 65°C in an aqueous solution containing 6x SSC (20x SSC contains 3.0 M NaCl, 0.3 M Na-citrate, pH 7.0), 5x Denhardt's (lOOX Denhardt's contains 2% Ficoll, 2% Polyvinyl pyrollidone, 2% Bovine Serum Albumin), 0.5% sodium dodecyl sulphate (SDS), and 20 μg/ml denaturated carrier DNA (single-stranded fish sperm DNA, with an average length of 120 - 3000 nucleotides) as non-specific competitor. Following hybridization, high stringency washing may be done in several steps, with a final wash (about 30 min)
at the hybridization temperature in 0.2-0. lx SSC, 0.1% SDS.
"Moderate stringency conditions" refers to conditions equivalent to hybridization in the above described solution but at about 60-62°C. Moderate stringency washing may be done at the hybridization temperature in lx SSC, 0.1% SDS.
"Low stringency" refers to conditions equivalent to hybridization in the above described solution at about 50-52°C. Low stringency washing may be done at the hybridization temperature in 2x SSC, 0.1% SDS. See also Sambrook et al. (1989) and Sambrook and Russell (2001).
Other sequences encoding AOX1 may also be obtained by DNA amplification using oligonucleotides specific for genes encoding AOXl as primers, such as but not limited to oligonucleotides comprising or consisting of about 20 to about 50 consecutive nucleotides from the known nucleotide sequences or their complement.
As used herein, an AOXl protein which has "at least 80% sequence identity to SEQ ID No. 2" can be an AOXl protein with 80%, or 83%, or 85%, or 87%, or 90%, or 91%, or 92%, or 93%, or 94%, or 95%, or 96%, or 97%, or 98%, or 99% sequence identity to SEQ ID No. 2, or can be SEQ ID No. 2 itself. An AOX protein which has at least 80% sequence identity to SEQ ID NO. 2 can be an AOX protein which has at least 80% sequence identity to both SEQ ID NO. 2 and the AOXIB protein from Arabidopsis thaliana, such as an AOX protein having 87% sequence identity to both SEQ ID NO. 2 and the AOXIB protein from Arabidopsis thaliana.
As used herein, a nucleic acid which has "at least 80% sequence identity to SEQ ID NO. 1" can be a nucleic acid with 80%, or 83%, or 85%, or 87%, or 90%, or 91%, or 92%, or 93%, or 94%, or 95%, or 96%, or 97%, or 98%, or 99% sequence identity to SEQ ID No. 1, or can be SEQ ID No. 1 itself. A nucleic acid which has at least 80% sequence identity to SEQ ID NO. 1 can be a nucleic acid which has at least 80% sequence identity to both SEQ ID NO. 1 and the AOXIB coding sequence from Arabidopsis thaliana, such as a nucleic acid having 83% sequence identity to both SEQ ID NO. 1 and the AOXIB coding sequence from Arabidopsis thaliana.
It will be clear that mutant alleles or genes can be obtained by addition,
substitution, insertion or deletion of one or more nucleotides with respect to the AOX sequences according to the invention.
Increasing expression of a nucleic acid encoding an AOX1 protein can comprise increasing expression on a whole plant level. Alternatively, increasing expression of a nucleic acid encoding an AOX1 protein can comprise increasing expression in specific plant parts or tissues, such as seeds, or specific seed tissues.
Increasing expression of a nucleic acid encoding an AOX1 protein can conveniently be achieved by heterologously expressing a nucleic acid encoding AOX1. Moreover, expression of the endogenous AOX1 encoding gene can be increased through, for example, T-DNA activation tagging, or by targeted genome engineering technologies in which, for example, the endogenous promoter is modified such that it drives higher levels of expression, or in which the endogenous promoter is replaced with a stronger promoter.
T-DNA activation tagging (Memelink, 2003, Methods Mol Biol. 236:345) is a method to activate endogenous genes by random insertion of a T-DNA carrying promoter or enhancer elements, which can cause transcriptional activation of flanking plant genes. The method can consist of generating a large number of transformed plants or plant cells using a specialized T-DNA construct, followed by selection for the desired phenotype.
Targeted genome engineering refers to generate intended and directed modifications into the genome. Such intended modifications can be insertions at specific genomic locations, deletions of specific endogenous sequences, and replacements of endogenous sequences. Targeted genome engineering can be based on homologous recombination. Targeted genome engineering to increase expression of the AOX1 endogene can consist of insertion of a promoter, stronger than the endogenous promoter, in front of the AOX1 coding sequence, or insert an enhancer to increase promoter activity, or insert elements enhancing RNA stability or enhancing translation of the encoded mRNA.
In a further embodiment of the invention, a method is provided for increasing oil
content, such as seed oil content, and/or seed yield, such as Thousand Kernel Weight, in plants comprising increasing expression of a nucleic acid encoding an AOXl protein comprising the steps of-'
a) providing a plant cell with a chimeric gene comprising the following operably linked nucleic acid molecules :
i) a heterologous plant-expressible promoter;
ii) said nucleic acid encoding an AOXl protein; and optionally
iii) a DNA region involved in transcription termination and polyadenylation; b) regeneration of said plant cell into a plant.
In a further embodiment, said plant-expressible promoter is a constitutive promoter, and in yet another embodiment, said constitutive promoter is the 35S promoter. In a further embodiment, said plant-expressible promoter is a seed-specific promoter.
Said plant cell can be provided with a chimeric gene using methods well-known in the art. Methods to provide plant cells with a chimeric gene are not deemed critical for the current invention and any method to provide plant cells with a chimeric gene suitable for a particular plant species can be used. Such methods are well known in the art and include Agrobacteriumr mediated transformation, particle gun delivery, microinjection, electroporation of intact cells, polyethylene glycol -mediated protoplast transformation, electroporation of protoplasts, liposome-mediated transformation, silicon-whiskers mediated transformation etc. Said chimeric gene may be stably integrated into the genome of said plant cell, resulting in a transformed plant cell. The transformed plant cells obtained in this way may then be regenerated into mature fertile transformed plants.
As used herein, the term "plant-expressible promoter" means a DNA sequence that is capable of controlling (initiating) transcription in a plant cell. This includes any promoter of plant origin, but also any promoter of non-plant origin which is capable of directing transcription in a plant cell, i.e., certain promoters of viral or bacterial origin such as the CaMV35S (Harpster et al. (1988) Mol Gen Genet. 212(l):l82-90, the
subterranean clover virus promoter No 4 or No 7 (WO9606932), or T-DNA gene promoters but also tissue-specific or organ-specific promoters including but not limited to seed-specific promoters (e.g., WO89/03887), organ-primordia specific promoters (An et al. (1996) Plant CeZ/ 8(l):i5-30), stem-specific promoters (Keller et al, (1988) EMBO J. 7(12): 3625-3633), leaf specific promoters (Hudspeth et al. (1989) Plant Mol Biol. 12: 579-589), mesophyl-specific promoters (such as the light-inducible Rubisco promoters), root-specific promoters (Keller et al. (1989) Genes Dev. 3: 1639-1646), tuber-specific promoters (Keil et al. (1989) EMBO J. 8(5): 1323-1330), vascular tissue specific promoters (Peleman et al. (1989) Gene 84: 359-369), stamen-selective promoters (WO 89/10396, WO 92/13956), dehiscence zone specific promoters (WO 97/13865) and the like.
A "heterologous promoter" as used herein refers to a promoter which is not normally associated in its natural context with the coding DNA region operably linked to it in the DNA molecules according to the invention. Accordingly, a heterologous promoter excludes the naturally associated promoter. A heterologous promoter to the nucleic acid encoding an AOX1 protein is therefore a promoter other than the AOX1 promoter.
A chimeric gene comprising a heterologous promoter and a nucleic acid encoding an AOX1 protein can also be referred to as an artificial construct.
Constitutive promoters are well known in the art, and include the CaMV35S promoter (Harpster et al. (1988) Mol Gen Genet. 212(l):l82-90), Actin promoters, such as, for example, the promoter from the Rice Actin gene (McElroy et al., 1990, Plant Cell 2:163), the promoter of the Cassava Vein Mosaic Virus (Verdaguer et al., 1996 Plant Mol. Biol. 31: H29), the GOS promoter (de Pater et al., 1992, Plant J. 2:837), the Histone H3 promoter (Chaubet et al, 1986, Plant Mol Biol 6:253), the Agrobacterium tumefaciens Nopaline Synthase (Nos) promoter (Depicker et al., 1982, J. Mol. Appl. Genet, l: 561), or Ubiquitin promoters, such as, for example, the promoter of the maize Ubiquitin-1 gene (Christensen et al., 1992, Plant Mol. Biol. 18:675).
Seed specific promoters are well known in the art, including the USP promoter
from Vicia faba described in DE10211617; the promoter sequences described in WO2009/073738; promoters from Brassica napus for seed specific gene expression as described in WO2009/077478; the plant seed specific promoters described in US2007/0022502; the plant seed specific promoters described in WO03/014347; the seed specific promoter described in WO2009/125826; the promoters of the omega_3 fatty acid desaturase family described in WO2006/005807 and the like.
A "transcription termination and polyadenylation region" as used herein is a sequence that drives the cleavage of the nascent RNA, whereafter a poly(A) tail is added at the resulting RNA 3' end, functional in plants. Transcription termination and polyadenylation signals functional in plants include, but are not limited to, 3'nos, 3'35S, 3'his and 3'g7.
It is a further aspect of the invention to provide methods for increasing seed oil content and/or Thousand Kernel Weight in seed oil plants, and it is yet another embodiment of the invention to provide methods for increasing seed oil content and/or Thousand Kernel Weight in Brassicaceae plants.
"Seed oil plants" as used herein refers to plants producing oil in their seeds. Examples of seed oil plants are Brassica oilseeds (including Brassica napus, Brassica campestris (rapa), Brassica juncea or Brassica carinata), sunflower, safflower, soybean, palm, Jatropha, flax, crambe, camelina, corn, sesame, castor beans.
As used herein, "Brassicaceae plants" are plants which according to the current botanical standard would be classified into the family Brassicaceae (formerly Cruciferaeae) . Brassicaceae (Mustard) family members are easy to distinguish. They are annual or perannual plants with alternate leaves without stipules and possess simple inflorescence or branched racemes. The flowers are bilaterally symmetrical and hypogynous. With few exceptions, the flowers have 4 petals (free) alternating with 4 sepals (free) >' 6 stamens (4 long and 2 short), an ovary of 2 united carpels with parital placenta, 2 locular through the formation of a membranous false septum ; fruit is a dehiscent capsule opening by 2 valves. Brassicaceae include inter alia the following genera : Sisymbrium, Descurania, Alliaria, Arabidopsis, Myagrum, Isatis, Bunia,
Erysium, Hesperis, Malcolmia, Matthiola, Chorispora, Euclidium, Barbarea, Rorippa, Armoracia, Nasturtium, Dentaria, Cardamine, Cardaminopsis, Arabis, Lunaria, Alyssum, Berteroa, Lobularia, Draba, Erophila, Cochlearia, Camelina, Neslia, Capsella, Hornungia, Thlsapi, Iberis, Lepidium, Cardaria, Coronopus, Subularia, Conringia, Diplotaxis, Brassica, Sinapsis, Eruca, Erucastrum, Coincya, Hirschfeldia, Cakile, Rapistum, Crambe, Enarthrocarpus, Rhaphanus and Clausia.
In a further embodiment, plants are provided that are obtained by the methods according to the invention. Another embodiment provides seeds from plants obtained by the methods according to the invention. In yet another embodiment, oil from the seeds of plants obtained by the methods according to the invention is provided.
The obtained plants can be used in a conventional breeding scheme to produce more plants with the same characteristics or to introduce the characteristic of increased expression of a nucleic acid encoding an AOXl protein according to the invention in other varieties of the same or related plant species, or in hybrid plants. The obtained plants can further be used for creating propagating material. Plants according to the invention can further be used to produce gametes, seeds (including crushed seeds and seed cakes), embryos, either zygotic or somatic, progeny or hybrids of plants obtained by methods of the invention. Seeds obtained from the obtained plants according to the invention are also encompassed by the invention.
"Creating propagating material", as used herein, relates to any means know in the art to produce further plants, plant parts or seeds and includes inter alia vegetative reproduction methods (e.g. air or ground layering, division, (bud) grafting, micropropagation, stolons or runners, storage organs such as bulbs, corms, tubers and rhizomes, striking or cutting, twin- scaling), sexual reproduction (crossing with another plant) and asexual reproduction (e.g. apomixis, somatic hybridization).
A further object of the invention is an isolated DNA encoding the Brassica napus AOXl protein of SEQ ID No. 2, such as an isolated DNA consisting of SEQ ID No. I. Yet a further object of the invention provides an isolated Brassica napus AOXl protein consisting of the nucleotide sequence of SEQ ID No. 2.
"Isolated DNA" as used herein refers to DNA not occurring in its natural genomic context, irrespective of its length and sequence. Isolated DNA can, for example, refer to DNA which is physically separated from the genomic context, such as a fragment of genomic DNA. Isolated DNA can also be an artificially produced DNA, such as a chemically synthesized DNA, or such as DNA produced via amplification reactions, such as polymerase chain reaction (PCR) well-known in the art. Isolated DNA can further refer to DNA present in a context of DNA in which it does not occur naturally. For example, isolated DNA can refer to a piece of DNA present in a plasmid. Further, the isolated DNA can refer to a piece of DNA present in another chromosomal context than the context in which it occurs naturally, such as for example at another position in the genome than the natural position, in the genome of another species than the species in which it occurs naturally, or in an artificial chromosome.
"Isolated protein" as used herein refers to a protein not occurring in its natural cellular context, irrespective of its length and sequence. An isolated protein can, for example, refer to a protein present in a plant cell in which it does not naturally occur. An isolated protein can also be a protein isolated from a plant cell in which it naturally occurs or in which it does not naturally occur. Further, an isolated protein can be a protein produced in a heterologous expression system well known in the art, such as a plant expression system, a yeast expression system, a microbial expression system, a mammalian expression system, where the isolated protein can reside within the cells of said expression system, can be extracted from the cells of said expression system, or can be purified from said expression system. Further, an isolated protein can be produced in an in vitro system, from which it can be extracted and purified.
The invention further provides a chimeric gene comprising the following operably linked nucleic acid molecules:
a) a heterologous plant-expressible promoter.'
b) a nucleic acid encoding an AOX1 protein containing at least 60% sequence identity to SEQ ID No. % and optionally
c) a DNA region involved in transcription termination and polyadenylation;
In another embodiment, said AOX1 protein contains at least 80% sequence identity to SEQ ID No. 2, whereas in yet another embodiment said nucleic acid encoding an AOX1 protein contains at least 80% sequence identity to SEQ ID No. 1. In a further embodiment, said plant-expressible promoter is a constitutive promoter, such as the 35S promoter, and in yet a further embodiment, said plant-expressible promoter is a seed-specific promoter.
The invention further relates to the use of the chimeric genes or of the isolated DNA according to the invention to increase plant seed oil content and/or to seed yield such as Thousand Kernel Weight.
The invention further provides methods for producing oil, comprising harvesting seeds from the plants according to the invention and extracting the oil from said seeds. In a further aspect, the invention provides a method of producing food or feed such as oil, meal, grain, starch, flour or protein, or an industrial product such as biofuel, fiber, industrial chemicals, a pharmaceutical or a neutraceutical, comprising obtaining the plant according to the invention or a part thereof, and preparing the food, feed, or industrial product from the plant or part thereof.
As used herein "comprising" is to be interpreted as specifying the presence of the stated features, integers, steps or components as referred to, but does not preclude the presence or addition of one or more features, integers, steps or components, or groups thereof. Thus, e.g., a nucleic acid or protein comprising a sequence of nucleotides or amino acids, may comprise more nucleotides or amino acids than the actually cited ones, i.e., be embedded in a larger nucleic acid or protein. A chimeric gene comprising a DNA region which is functionally or structurally defined, may comprise additional DNA regions etc.
Unless stated otherwise in the Examples, all recombinant DNA techniques are carried out according to standard protocols as described in Sambrook et al. (1989) Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press, NY and in Volumes 1 and 2 of Ausubel et al. (1994) Current Protocols in Molecular Biology, Current Protocols, USA. Standard materials and
methods for plant molecular work are described in Plant Molecular Biology Labfax (1993) by R.D.D. Croy, jointly published by BIOS Scientific Publications Ltd (UK) and Blackwell Scientific Publications, UK. Other references for standard molecular biology techniques include Sambrook and Russell (2001) Molecular Cloning: A Laboratory Manual, Third Edition, Cold Spring Harbor Laboratory Press, NY, Volumes I and II of Brown (1998) Molecular Biology LabFax, Second Edition, Academic Press (UK). Standard materials and methods for polymerase chain reactions can be found in Dieffenbach and Dveksler (1995) PCR Primer: A Laboratory Manual, Cold Spring Harbor Laboratory Press, and in McPherson at al. (2000) PCR ■ Basics: From Background to Bench, First Edition, Springer Verlag, Germany.
All patents, patent applications, and publications or public disclosures (including publications on internet) referred to or cited herein are incorporated by reference in their entirety.
SEQUENCES
SEQ ID NO: : Brassica napus AOX1 coding sequence.
SEQ ID NO: Brassica napus AOXl protein.
SEQ ID NO: 3: BnAOXl forward primer.
SEQ ID NO: 4: BnAOXl reverse primer.
SEQ ID NO: 5: AtAOXlB forward primer.
SEQ ID NO: 6-- AtAOXlB reverse primer.
SEQ ID NO: 7: T7 primer.
SEQ ID NO: 8: 35S promoter specific primer.
EXAMPLES
The applicants of the present invention have screened out a set of genes including BnAOXl gene, which are differentially expressed not only between two kinds of Brassica napus parent lines but also between the extremely segregated lines of F2 generation, by analyzing the differences in gene expression between two kinds of
parent lines with significantly different oil-content as well as between the mixed samples of the segregated lines of F2 generation exhibiting significantly different oil-content. In order to confirm if the gene has an effect on seed oil content and other traits of the seed, the applicants have cloned the full-length gene, constructed an expression vector comprising said full-length gene, and transformed thereof into the model plant Arabidopsis thaliana. The respiratory metabolism- associated gene BnAOXl from Brassica napus is useful in increasing the oil content and the thousand kernel weight in oil crops.
Example l: identification of the BnAOXl gene
I. Source of the gene:
A high-oil content Brassica napus line zy036 (oil content thereof being 51%) was crossed with a low-oil content Brassica napus line Y817 (oil content thereof being 35%) in order to establish a population of F2 generation. A total of 169 F2 offspring plantlets was used as the starting material. The silique (with pod shells and ovules) were collected respectively from each of F2 plants about 25 days post blossom; and the oil content was determined in mature seeds from the individual plants. The silique from individual plants having a determined oil content of greater than 47% and of less than 38.5% were weighed and mixed in equal amount of 200 mg respectively to constitute two mixed samples with two extreme oil contents, which samples are coded by H and L, respectively. 11 plants had an oil content of greater than 47% and 11 plants had an oil content of less than 38.5%. There was difference of 11.1% between the average oil contents of the two mixed samples. Genes expressed in the two parents and two mixed samples were assayed. The genes whose expression levels were different between the parents as well as between the mixed samples of F2 generations were identified, from which the gene BnAOXl originates.
Both the parent lines zy036 and Y817 used in the study had been established by the technicians of the biotechnical breeding team in the Oil Crops Research Institute (OCRI) of the Chinese Academy of Agricultural Sciences (CAAS) under the direction of
the researcher Wang Hanzhong. The zy036 line is developed by establishing a recurrent selection population consisted of Zhongshuang No.4, Zhongshuang No.7, Zhongshuang No.9, Huashuang No.3, and Youyan No.9, performing recurrent selections of two generations, followed by recurrent selection of the third generation by microspore culture of excellent individual plants therefrom, and eventually conducting high oil content-directed selection. Y817 is a maintenance line for the hybrid cultivar Zhongyou hybrid No.l (Study on techniques about seed production of Zhouyou Hybrid No.l and their utilization, Rural Economy and Science -Technology, (10), 2001).
II. Cloning of the full-length gene:
By screening for gene expression difference, it had been found that the expression levels of the BnAOXl gene in the Brassica napus high-oil-content parent and the mixed population of high-oil-content F2 generations are higher than those in the lowoil-content parent and the mixed population of low-oil-content F2 generations.
Brassica napus genomic sequences homologous to the AOX1 gene have been identified by means of the sequence of Arabidopsis thaliana AOX1B gene (AtAOXlB; Accession Number At3g22360) and an in-house sequence database, then spliced them together, and designed primers flanking the coding regions of the gene of interest on the basis of the spliced sequence. RT-PCR amplification was performed using the cDNA first strand from the parent zy036 as template. The amplified fragment was sequenced, to obtain the coding region sequence of BnAOXl gene. A protein is disclosed, the base sequence encoding said protein is the nucleotide sequence shown in SEQ ID NO: 1. A protein is disclosed, the sequence thereof being the amino acid sequence shown as SEQ ID NO: 2. At the same time, primers for amplifying the sequence of the homologous gene AtAOXlB in Arabidopsis thaliana were designed by use of gene sequences (At3g22360).
III. Detailed description of cloning BnAOXl:
The published gene sequences of Arabidopsis in a sequence database were
searched. EST sequences of Brassica napus were BLASTed and used in combination with Arabidopsis thaliana sequences to design a pair of primers flanking the coding regions of the gene of interest (BnAOXlF: forward primer: [5'-atgatgatgagtcgctacgg-3'] (SEQ ID No. 3), BnAOXIR reverse primer: [5'- tcaatgatccaattggag-3'] (SEQ ID No. 4)) for use in amplifying the corresponding sequence from cDNA of the Brassica napus 15-day-old siliques. Primers for amplification in Arabidopsis thaliana were as follows: AtAOXlB forward primer: [5'-atgatgatgagtcgtcgcta-3'] (SEQ ID No. 5) and reverse primer: [5'-tcaatgatatccaatgggagc-3'] (SEQ ID No. 6), for use in direct amplification from cDNA of the Arabidopsis thaliana 10-dayold siliques.
1. Extraction of mRNAs from Brassica napus, Arabidopsis thaliana
RNA extraction (extraction of RNA with TRIZOL TM Kit): grind 100 mg of raw material in liquid nitrogen.
A. Add 1 ml of TRIZOL, and the resultant mixture is left at room temperature (RT, 20-25 °C, same hereinafter) for 5 min.
B. Add 200 μΐ of chloroform, agitate vigorously for 30 s, and the resultant mixture is left at RT for 2 min.
C. The mixture from step B is centrifuged at 4°C at 12000g for 15min. The resultant supernatant is transferred into a new tube. 500 μΐ of isopropanol is added and mixed well. Then, the resulting mixture is left at RT for 15 min.
D. The resulting mixture is centrifuged at 4°C at 12000g for 15min. The resultant supernatant is discarded. 1ml of 70% (vol/vol) ethanol is added and mixed well.
E. The resulting mixture is centrifuged at 4°C at 7500g for 7 min. The resultant supernatant is discarded and the RNA pellet is air-dried.
F. The air-dried RNA pellet is dissolved in DEPC-H2O.
2. Reverse transcription of the first strand cDNA is performed with Revert- Aid H Minus First Strand cDNA Synthesis Kit (Fermentas), with operation following the instruction of the kit used.
3. PCR amplification is performed by using the resulting cDNAs as a template, and BnAOXl and AtAOXlB genes are obtained. The sequences of BnAOXl and AtAOXlB
genes are as follows: a respiratory metabolism-associated gene BnAOXl from Brassica napus, encoding the BnAOXl protein, the base sequence thereof is the nucleotide sequence shown in SEQ ID NO: V, the BnAOXl protein, the sequence of the protein is the amino acid sequence as shown in SEQ ID NO: 2, and gene sequences of Arabidopsis as published (database accession number At3g22360).
Example 2- Construction of the transgenic vector for transformation of Arabidopsis thaliana
The method for using the cloned gene comprises the following steps:
l) The cloned Brassica napus gene was ligated into the plasmid PCR8/GW/TOPO, then the Brassica napus gene was transferred further to an expression vector plasmid pEarley gate 100 by taking advantage of the feature that the plasmid PCR8/GW/TOPO can be recombined in vitro into the expression vector plasmid.
The method for cloning the Brassica napus gene according to the present invention is the one commonly used in the art, such as, CTAB protocol is used to extract DNA from plant leaves. The methods for extracting mRNA are various and have been well-established, such as, TRIzol Reagent Protocol from Invitrogen Co. or
Total RNA Extraction from Qiagen Co., all of which are commercially available. cDNA library construction is also a conventional technique in molecular biology. Methods for constructing and transforming the vector according to the present invention into a plant are also those commonly used in the art. The involved plasmids (the entry vector PCR8/GW/TOPO and the expression vector plasmid pEarley gate 100) in the methods, host cells for transformation (e.g., Agrobacterium tumefaciens GV3101), and reagents (sucrose, etc.,) used are commercially available. The method most commonly used for polymorphic analysis of molecular marker is polyacrylamide gel electrophoresis in which the reagents used are commercially available, such as, acrylamide, methylene bisacrylamide, etc.
Detailed description of the construction of the transgenic vector:
The gene sequence obtained by PCR amplification was ligated into the TOPO entry
vector (Invitrogen Co.), then the obtained vector was transformed into DH5a competent cells (Invitrogen Co.). Screening of positive colonies with spectinomycin was performed. The plasmid of interest with the forwardly ligated insert was identified by PCR amplification using a vector-specific primer (T7 primer, TAATACGACTCACTATAGGG) (SEQ ID No. 7) and a gene-specific primer (the forward primer for the target gene, the sequence of which was shown in Example l). The plasmid of interest was mini-prepared, then recombined into the vector pEarleygate 100 (Invitrogen Co.), and finally transformed into DH5a competent cells. Screening of the transformant with kanamycin was performed. The presence of the inserted fragment in the transformant was confirmed by PCR amplification using a vector-specific primer (35S promoter-specific primer, CACGTCTTCAAAGCAAGTGGA) (SEQ ID No. 8) and a gene-specific primer (the reverse primer for the target gene, the sequence of which is shown in Example l). The schematic map of the resulting plasmid is shown in Fig.l.
Example 3^ Transformation of Arabidopsis
The expression vector prepared in Example 2 was introduced into Agrobacterium tumefaciens GV3101 and further into Arabidopsis thaliana plants, using the following steps^
Transformation of Arabidopsis thaliana
Formulation of the reagent
Osmotic medium (1L): 1/2 x Murashige-Skoog; 5% (mass percentage) sucrose! 0.5g of MES; adjusted with KOH to pH = 5.7; then supplemented with 10 μΐ of lmg/ml 6-BA (6-benzylaminopurine) stock solution,' 200 μΐ of Silwet L-77.
Transformation procedure :
(l) 10ml of the suspension of Agrobacterium (GV3101, commercially available) transformed with the corresponding plasmid was prepared, then transferred into a large flask for overnight cultivation in the night just before the transformation day. Next day upon use, Οϋβοο of the overnight culture of Agrobacterium should be between 1.2 and 1.6.
(2) The overnight culture was centrifuged at 5000 rpm at room temperature for 15 min.
(3) The supernatant was discarded and the Agrobacterium pellet was resuspended in the corresponding volume of the osmotic media, resulting in Οϋβοο of about 0.8.
(4) A whole plant was immersed into the resulting Agrobacterium suspension for
30 s.
(5) The treated plant was grown overnight with avoidance of light and then cultivated normally until producing seed. The seeds were harvested for further screening and identification.
Example 4- Screening and confirmation of transgenic Arabidopsis thaliana
Screening of the transformants:
The vernalized Arabidopsis seeds were seeded in artificial soil irrigated with the saturated Hyponex NO.2 (commercially available) nutrient solution and covered with plastic wrap. Two days later, light was given, and three days later, the plastic wrap was removed.
Conditions in the artificial cultivation chamber were as follows : Relative humidity: 80%, constant temperature of 20-24°C, light intensity of 80-200 umol M2/S, light cycle: 8h of Dark, 16 h of Light. After about one week, a herbicide (glyphosate) was sprayed to screen positive plants.
Identification of the transgene by PCR:
(l) Extraction of total DNA from a transformed plant for PCR.
A. Leaves were cleaned with 70% (vol/vol) ethanol and weighed about 100 mg.
B. 600 μΐ of extraction buffer (0.2 M Tris-HCl, 0.25 NaCl, 25mM EDTA, 0.5% (mass percentage) SDS, pH 7.5) was added and rapid grinding was performed at room temperature.
C. the resulting mixture was vortexed for 5-10s in a 1.5ml Ependorff tube to homogeneity.
D. the vortexed mixture was centrifuged at 12000 rpm at room temperature for 25
min. The supernatant was collected, followed by adding equal volume of isopropanol, then precipitated at -20 °C overnight.
E. the resulting mixture from step C was centrifuged at 12000 rpm at room temperature for 15 min. DNA pellet was washed by adding 200 μΐ of 70% (vol/vol) ethanol.
F. the resultant from step E was centrifuged at 12000 rpm at room temperature for 15 min. Ethanol was discarded. The tube with the DNA pellet was placed inversely on a paper towel until the ethanol was volatilized completely.
G. the extracted DNA pellet in the tube was dissolved in 100 μΐ of sterile water. The DNA concentration was estimated with a spectrometer or by electrophoresis.
H. PCR was performed by using the total DNA as a template.
(2) PCR protocol
Formulation ratio for the PCR reaction mixture was the same as that in identification of the plasmid by PCR, and based on the sequence of 35S promoter in the plant expression vector and the sequences of the reverse primers for the BnAOXl and AtAOXlB genes: [5'-tcaatgatccaattggag-3'] (SEQ ID No. 4) and [5'-tcaatgatatccaatgggagc-3'] (SEQ ID No. 6), respectively, the time and temperature for the reaction was as follows: 94°C 3 min, 30 cycles of 94°C 45s, 59°C 45s, 72°C 2 min 30s, then 72°C 5 min.
The result from the PCR identification demonstrated that an electrophoretic bands of expected size could be amplified from most of transformed plants, while no such band could be amplified from negative control, indicating that some transgenic Arabidopsis thaliana lines had been obtained (see Figure 2).
Example 5: Determination of seed oil content and thousand kernel weight of the transgenic Arabidopsis thaliana
The transgenic homozygous lines were grown at 21-23 °C in a greenhouse. The seeds were harvested and then tested the changes in the oil content and thousand kernel weight (Fig. 3).
The overall phenotype of the transgenic Arabidopsis thaliana plant overexpressing BnAOXl gene or AtAOXlB gene was not significantly different from that of the wild type Arabidopsis thaliana control. After harvest of the seeds, it was found that the seeds from the transgenic plant were significantly larger than those from the wild type control (Figure 3). The seed oil content was determined by pulse nuclear magnetic resonance spectrometer. The result showed that seed oil content of transgenic Arabidopsis thaliana was significantly increased in comparison with that of the wild type Arabidopsis thaliana, with the highest increase by above 20% (Table l). Moreover, the thousand kernel weight in transgenic Arabidopsis thaliana was also increased to some extent, with the highest increase by up to 25% (Table l). It is clear from the above results that the Brassica napus AOXl gene and the Arabidopsis thaliana AOXIB gene can increase both the seed oil content and the kernel weight.
Table 1 - Determination of the oil content and the thousand kernel weight (TKW) in Arabidopsis thaliana overexpressing BnAOXl (BnAOXl- 1 to BnAOXl-4) or AtAOXlB(AtAOXl-l to AtAOXl-4).
Claims
1. A method for increasing oil content and/or seed yield in plants comprising increasing expression of a nucleic acid encoding an AOXl protein.
2. The method according to claim 1, wherein said oil content is seed oil content.
3. The method according to claim 1 or 2, further characterized in that the Thousand Kernel Weight is increased.
4. The method according to any one of claims 1 to 3, wherein said AOXl protein has at least 60% sequence identity to SEQ ID No. 2.
5. The method according to any one of claims 1 to 4, wherein said AOXl protein has at least 80% sequence identity to SEQ ID No. 2.
6. The method according to any one of claims 1 to 5, wherein said nucleic acid has at least 80% sequence identity to SEQ ID No. 1.
7. The method according to any one of claims 1 to 4, wherein said AOXl protein has at least 80% sequence identity to the AOXl protein from Arabidopsis thaliana.
8. The method according to any one of claims 1 to 4 or 7, wherein said nucleic acid has at least 80% sequence identity to the AOXl coding sequence from Arabidopsis thaliana.
9. The method according to any one of claims 1 to 8, comprising the steps of:
a) providing a plant cell with a chimeric gene comprising the following operably linked nucleic acid molecules'- i) a heterologous plant-expressible promoter;
ii) a nucleic acid encoding an AOXl protein! and optionally
iii) a DNA region involved in transcription termination and polyadenylation; b) regeneration of said plant cell into a plant.
10. The method according to claim 9, wherein said plant-expressible promoter is a constitutive promoter.
11. The method according to claim 10, wherein said constitutive promoter is the 35S promoter.
12. The method according to claim 9, wherein said plant-expressible promoter is a seed-specific promoter.
13. The method according to any one of claims 1 to 12, wherein said plant is a seed oil plant.
14. The method according to claim 13, wherein said plant is a Brassicaceae plant.
15. Plants obtained by the methods according to any one of claims 1 to 14.
16. An isolated Brassica napus AOX1 gene encoding the protein of SEQ ID No. 2.
17. An isolated Brassica napusAOXl gene consisting of the nucleotide sequence of SEQ ID No. 1.
18. An isolated Brassica napusAOXl protein consisting of the amino acid sequence of SEQ ID No. 2.
19. Chimeric gene comprising the following operably linked nucleic acid molecules: a) a heterologous plant-expressible promoter,"
b) a nucleic acid encoding an AOX1 protein containing at least 60% sequence identity to SEQ ID No. 2; and optionally
c) a DNA region involved in transcription termination and polyadenylation.
20. The chimeric gene according to claim 19, wherein said AOX1 protein contains at least 80% sequence identity to SEQ ID No. 2.
21. The chimeric gene according to claim 20, wherein said nucleic acid encoding an AOX1 protein contains at least 80% sequence identity to SEQ ID No. 1.
22. The chimeric gene according to any one of claims 19 to 21, wherein said plant-expressible promoter is a constitutive promoter.
23. The chimeric gene according to claim 22, wherein said constitutive promoter is the 35S promoter.
24. The chimeric gene according to any one of claims 19 to 21, wherein said plant-expressible promoter is a seed-specific promoter.
25. A plant or plant cell comprising the chimeric gene according to any one of claims 19 to 24.
26. Seeds from the plants of claim 15 or 25.
27. Oil from the seeds of claim 26.
28. Use of the isolated gene according to claim 16 or 17 to increase plant seed oil content and/or Thousand Kernel Weight.
29. Use of the chimeric gene according to any one of claims 19 to 24 to increase plant seed oil content and/or Thousand Kernel Weight.
30. Method for producing oil, comprising harvesting seeds from the plants according to claim 15 or 25 and extracting the oil from said seeds.
31. A method of producing food, feed, or an industrial product comprising a) obtaining the plant of claim 15 or 25 or a part thereof; and
b) preparing the food, feed or industrial product from the plant or part thereof.
32. The method of claim 31, wherein
a) the food or feed is oil, meal, grain, starch, flour or protein; or
b) the industrial product is biofuel, fiber, industrial chemicals, a pharmaceutical or a nutraceutical.
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WO2014161908A1 (en) | 2013-04-05 | 2014-10-09 | Bayer Cropscience Nv | Brassica plants comprising mutant da1 alleles |
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CN113528532B (en) * | 2020-03-31 | 2022-05-03 | 中国农业科学院油料作物研究所 | Gene AtOIL3 for regulating oil content and thousand kernel weight of arabidopsis thaliana seed |
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WO2014161908A1 (en) | 2013-04-05 | 2014-10-09 | Bayer Cropscience Nv | Brassica plants comprising mutant da1 alleles |
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CA2825924C (en) | 2018-10-02 |
CN102618560A (en) | 2012-08-01 |
CN102618560B (en) | 2013-06-19 |
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