WO2011147951A1 - Cycloamino derivatives as gpr119 antagonists - Google Patents

Cycloamino derivatives as gpr119 antagonists Download PDF

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WO2011147951A1
WO2011147951A1 PCT/EP2011/058703 EP2011058703W WO2011147951A1 WO 2011147951 A1 WO2011147951 A1 WO 2011147951A1 EP 2011058703 W EP2011058703 W EP 2011058703W WO 2011147951 A1 WO2011147951 A1 WO 2011147951A1
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preparation
compound
vacuo
solution
added
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PCT/EP2011/058703
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WO2011147951A8 (en
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Oscar Barba
James Charles Bell
Tom Banksia Dupree
Peter Timothy Fry
Lisa Sarah Bertram
Matthew Colin Thor Fyfe
William Gattrell
Revathy Perpetua Jeevaratnam
John Keily
Thomas Martin Krulle
Russell Walker Mcdonald
Trevor Morgan
Chrystelle Marie Rasamison
Karen Lesley Schofield
Alan John William Stewart
Simon Andrew Swain
David Matthew Withall
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Prosidion Limited
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Priority claimed from GBGB1008985.2A external-priority patent/GB201008985D0/en
Priority claimed from GBGB1019547.7A external-priority patent/GB201019547D0/en
Priority claimed from GB1103283.6A external-priority patent/GB2488360A/en
Application filed by Prosidion Limited filed Critical Prosidion Limited
Publication of WO2011147951A1 publication Critical patent/WO2011147951A1/en
Publication of WO2011147951A8 publication Critical patent/WO2011147951A8/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D413/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
    • C07D413/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing three or more hetero rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P3/00Drugs for disorders of the metabolism
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P3/00Drugs for disorders of the metabolism
    • A61P3/06Antihyperlipidemics
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P3/00Drugs for disorders of the metabolism
    • A61P3/08Drugs for disorders of the metabolism for glucose homeostasis
    • A61P3/10Drugs for disorders of the metabolism for glucose homeostasis for hyperglycaemia, e.g. antidiabetics
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/14Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D409/00Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms
    • C07D409/14Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D417/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
    • C07D417/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D487/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
    • C07D487/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
    • C07D487/04Ortho-condensed systems
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D491/00Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00
    • C07D491/02Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00 in which the condensed system contains two hetero rings
    • C07D491/08Bridged systems

Definitions

  • the present invention is directed to therapeutic compounds useful for the treatment of metabolic disorders including type II diabetes.
  • the present invention is directed to compounds which have activity as agonists of GPR119.
  • Drugs aimed at the pathophysiology associated with non-insulin dependent type II diabetes have many potential side effects and do not adequately address the dyslipidaemia and hyperglycaemia in a high proportion of patients. Treatment is often focused at individual patient needs using diet, exercise, hypoglycaemic agents and insulin, but there is a continuing need for novel antidiabetic agents, particularly ones that may be better tolerated with fewer adverse effects.
  • metabolic syndrome places people at high risk of coronary artery disease, and is characterized by a cluster of risk factors including central obesity (excessive fat tissue in the abdominal region), glucose intolerance, high triglycerides and low HDL cholesterol, and high blood pressure.
  • central obesity excessive fat tissue in the abdominal region
  • glucose intolerance high triglycerides
  • low HDL cholesterol high blood pressure
  • Myocardial ischemia and microvascular disease is an established morbidity associated with untreated or poorly controlled metabolic syndrome.
  • Obesity is characterized by an excessive adipose tissue mass relative to body size.
  • body fat mass is estimated by the body mass index (BMI; weight(kg)/height(m) ), or waist circumference.
  • BMI body mass index
  • Individuals are considered obese when the BMI is greater than 30 and there are established medical consequences of being overweight. It has been an accepted medical view for some time that an increased body weight, especially as a result of abdominal body fat, is associated with an increased risk for diabetes, hypertension, heart disease, and numerous other health complications, such as arthritis, stroke, gallbladder disease, muscular and respiratory problems, back pain and even certain cancers.
  • GPR119 (previously referred to as GPR116) is a GPCR identified as SNORF25 in WO00/50562 which discloses both the human and rat receptors, US 6,468,756 also discloses the mouse receptor (accession numbers: AAN95194 (human), AAN95195 (rat) and
  • GPR119 is expressed in the pancreas, small intestine, colon and adipose tissue.
  • the expression profile of the human GPR119 receptor indicates its potential utility as a target for the treatment of diabetes.
  • GPR119 agonists have been shown to stimulate the release of GLP-1 from the GI tract. In doing so, GPR119 agonists (1) enhance glucose-dependent insulin release from the pancreas leading to improvements in oral glucose tolerance; (2) attenuate disease progression by increasing ⁇ -cell cAMP concentrations; and (3) induce weight loss possibly through GLP- 1 's ability to reduce food intake.
  • WO 2010/004347 and WO 2010/004348 disclose GPR119 receptor agonists.
  • DPP-IV Dipeptidyl peptidase IV
  • GLP-1 inactivation GLP-1.
  • DPP-IV inhibitors are of use for the treatment of type II diabetes, examples of DPP-IV inhibitors include vildagliptin, sitagliptin, alogliptin and saxagliptin.
  • WO 2009/034388 discloses dual GPR119 agonists and DPP-IV inhibitors.
  • the compounds of the invention may also have dual activity as agonists of GPR119 and inhibitors of DPP-IV.
  • A is a para-substituted phenyl or a para-substituted 6-membered heteroaryl ring containing one to three nitrogen atoms;
  • R1 is hydrogen, halo, cyano, C ⁇ _4alkyl, C ⁇ .4 haloalkyl, C ⁇ .4 alkoxy or C2. galkoxyalkyl;
  • phenyl optionally substituted by one or more halo, methyl, halomethyl or methoxy groups, or pyridyl, N-pyridonyl or N-pyrazolyl, optionally substituted by one or more halo, Ci _2 alkyl or halomethyl groups,
  • R ⁇ is independently halo, methyl or halomethyl
  • Z is -C(0)OR 4 , -C(0)R 4 , -S(0) 2 R 4 , -S(0) 2 N(Ci_3alkyl)R 4 , heteroaryl or
  • Z can also be -CH 2 -phenyl, which phenyl is optionally substituted by one or two groups independently selected from C ⁇ .4 alkyl, C ⁇ .4 haloalkyl and halo;
  • R 4 is aryl, heteroaryl, C2-6 a lkyl, C3_6cycloalkyl, C4_6heterocyclyl, heterocyclylCi . 4alkyl, C2_6 a lkoxyalkyl, arylCj _4alkyl, heteroarylC ⁇ .4 alkyl or C4_ cycloalkylCi _4alkyl, which cycloalkylCj .4 alkyl is optionally substituted by C ⁇ .4 alkyl;
  • aryl or heteroaryl may optionally be substituted by one or two groups selected from halo, cyano, SF5, C ⁇ .4 alkyl, C ⁇ _4haloalkyl, C ⁇ .5 hydroxyalkyl, Ci _4alkoxy, C2.
  • Ci .4 alkyl independently selected from Ci .4 alkyl, hydroxy or halo;
  • X is selected from CR 5 H, O, and NR 6 in which R 5 and R 6 are independently hydrogen or C ⁇ _2alkyl;
  • Y is or W- ⁇ , where W is a 5 membered heteroaryl ring containing one or more heteroatoms selected from N, O and S, and ⁇ is selected from CR 7 H, O and NR 8 , in which R ⁇ is hydrogen, Ci _2alkyl,C2-6 a lkoxyalkyl or heterocyclyl; wherein said Ci _2alkyl can be optionally substituted by cyano, hydroxy or halo and R 8 is C ⁇ _4alkyl or C ⁇ _4cycloalkyl, provided that when Y is W-Y 1 , X is O and Y 1 is CR 7 H, when Y 1 is O or NR 8 , X is CR 5 H and when X is O or NR 6 , Y 1 is CR 7 H;
  • each of R ⁇ and R ⁇ is independently H, halo, C ⁇ _2alky, C ⁇ _2haloalkyl,
  • R11 is H, halo, Ci _2alkyl, C ⁇ _2haloalkyl or Ci _3alkoxy;
  • n 0, 1 or 2;
  • n 0 or 1 ;
  • p and q are each 0, 1 or 2, provided that 0 ⁇ p+q ⁇ 2;
  • r is 1 or 2.
  • the compounds of the invention have activity as agonists of GPRl 19 and may also be inhibitors of DPP-IV and are therefore useful for the treatment of metabolic disorders including type II diabetes.
  • R ⁇ is suitably hydrogen or methyl.
  • R 6 is suitably hydrogen.
  • R 8 is suitably methyl.
  • R 1 1 may be H.
  • R11 may be alkoxy, e.g., methoxy.
  • R11 may be halo, including F.
  • the compounds of the invention may suitably have the stereochemistry defined below (compounds of formula (la)); such compounds may demonstrate DPP-IV inhibitory activity:
  • p and q are independently 0, 1 or 2 provided that p+q does not exceed 2, i.e., forming a 4-, 5- or 6-membered ring. In some embodiments, p and q may be the same, i.e., forming a 4- or 6-membered ring. Suitably p and q are both 1.
  • R9 and R 10 may be the same or different from one another.
  • R9 and RIO are both H.
  • p (or q) is 2
  • the two R ⁇ (or RIO) groups may be the same as or different from one another.
  • one of R ⁇ (or RIO) is other than H, the other one may be H.
  • A may be a para linked 6-membered heteroaromatic ring containing one or two nitrogen atoms.
  • A is suitably pyridine, pyrimidine, pyrazine or pyridazine, typically pyridine or pyrimidine, e.g., 2- or 3-pyridyl or 2- or 5-pyrimidinyl, where the 2-, 3- or 5- refers to the point of attachment of the pyrrolidine or piperidine ring.
  • Y is ⁇ .
  • may be O and X may be CR 5 H.
  • X may be O and ⁇ may suitably be CR ⁇ H.
  • the compounds of the invention may have the formula:
  • Y 1 may be NR 8 and X may be CR 5 H.
  • X may be NR ⁇ and ⁇ may be CR 7 H.
  • Y may be W- ⁇ , where ⁇ is CR ⁇ H bonded directly to X and X is O.
  • W is typically oxadiazolyl.
  • the compounds of the invention may suitably have the formula:
  • A may be selected from:
  • Z may suitably be -C(0)OR 4 , -C(0)R 4 or -S(0)2R 4 .
  • R 4 may suitably be alkyl, C4.5 alkoxyalkyl, cycloalkyl or cycloalkylalkyl, wherein said cycloalkylalkyl is optionally substituted by C ⁇ .4 alkyl.
  • R 4 may be propyl, especially isopropyl.
  • Z may be a heteroaryl group that may optionally be substituted by one or two groups selected from C i .4 alkyl, C i .4 haloalkyl, C i .5 hydroxyalkyl,
  • C2.4 alkoxyalkyl C3. cycloalkyl optionally substituted by C ⁇ .4 alkyl or halo, C ⁇ .4 alkoxy, heterocyclyl, heterocyclylalkyl, heteroarylalkyl, alkylamino, alkylaminoalkyl, cyano and halogen.
  • suitable heteroaryl groups are oxadiazole, pyrimidine, pyridazine, thiazole, tetrazole, benzothiazole and thiadiazole, e.g., oxadiazole and
  • Z may suitably comprise l ,2,4-oxadiazol-3-yl, 1 ,2,4- oxadiazol-5-yl or pyrimidin-2-yl, which may be substituted by any of the aforementioned substituents.
  • said l ,2,4-oxadiazol-3-yl or l ,2,4-oxadiazol-5-yl may be substituted by C ⁇ .4 alkyl, such as propyl (e.g., 3-isopropyl or 5-isopropyl), C ⁇ .4 haloalkyl,
  • said C i .5 hydroxyalkyl group may be C i .3 hydroxyalkyl, e.g. hydroxyethyl.
  • Pyrimidin-2-yl may be unsubstituted or substituted with one or more halo groups, e.g. 5-chloropyrimidin-2-yl.
  • Z may suitably be -CH2-phenyl, wherein the phenyl is optionally substituted by one or two groups independently selected from C i .4 alkyl, C i .4 haloalkyl and halo.
  • R1 may suitably be H or Ci _2alkyl, e.g., methyl. Generally, compounds in which R1 is H may be preferred.
  • R ⁇ may suitably be optionally substituted phenyl, pyridyl, N-pyrazolyl or N- pyridonyl,
  • R ⁇ may suitably be phenyl substituted by one, two or three halo groups; the halo groups are suitably fluoro.
  • R ⁇ may be pyridyl, N-pyrazolyl or N-pyridonyl substituted by one, two or three halo, methyl or methoxy groups, typically one or two methyl groups.
  • R ⁇ may suitably be phenyl optionally substituted by one or more halo, methyl or halomethyl groups.
  • R ⁇ when Y is W-Y ⁇ , R ⁇ may be selected from:
  • phenyl optionally substituted by one or more halo, methyl, halomethyl or methoxy groups, or pyridyl, optionally substituted by one or more halo, C ⁇ _2 alkyl or halomethyl groups, wherein the lactam, phenyl and pyridyl groups are the same as they are above.
  • R ⁇ is suitably H or C ⁇ _2alkyl, typically methyl.
  • R ⁇ may be
  • C ⁇ _2alkyl and R ⁇ may be phenyl, optionally substituted by one or more halo, methyl or halomethyl groups.
  • R ⁇ may be phenyl optionally substituted by one or more halo, methyl or halomethyl groups.
  • the molecular weight of the compounds of the invention is suitably less than about 800, typically less than about 600.
  • Z is heteroaryl, particularly oxadiazolyl
  • the compounds of the invention may be metabolized in vivo by a ring-opening mechanism to form compounds of formula (Id):
  • A, R1 to R11, X, Y, m, n, p, q and r are as defined for any of formulae (I), (lb) or (Ic) above;
  • Z is -C(0)R 12 ;
  • R 12 is -NHC(0)R 13 or -NHC(NH)R 13 , in which R 13 is selected from C 1.4 alkyl, Ci _4haloalkyl, C1.5 hydroxyalkyl, Ci _4alkoxy, C2_4alkoxyalkyl, heterocyclyl,
  • cycloalkyl and alkyl groups are each optionally substituted by one or two groups independently selected from C ⁇ .4 alkyl, hydroxy or halo.
  • Said compounds of formula (Id) may have the stereochemistry of formula (la).
  • R ⁇ 3 may be C ⁇ .4 alkyl, for instance propyl or isopropyl.
  • Y 1 may be CR 7 H, where R 7 is Ci _2 alkyl as defined above.
  • the invention also comprehends isotopically-labeled compounds, which are identical to those recited in formulae (I), (lb), (Ic) and (Id) and following, but for the fact that one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number most commonly found in nature.
  • isotopes that can be incorporated into compounds of the invention include isotopes of hydrogen, carbon, nitrogen, fluorine, such as ⁇ C, and l ⁇ F.
  • Isotopically-labeled compounds of the present invention for example those into which radioactive isotopes such as 3 ⁇ 4, are incorporated, are useful in drug and/or substrate tissue distribution assays. Tritiated, i.e., 3 ⁇ 4, and carbon-14, i.e., l ⁇ C, isotopes are particularly preferred for their ease of preparation and detectability. 1 lC and l ⁇ F isotopes are particularly useful in PET (positron emission tomography). PET is useful in brain imaging.
  • isotopically labeled compounds of formula (I), (lb), (Ic) and (Id) and following of this invention can generally be prepared by carrying out the procedures disclosed in the Schemes and/or in the Examples below, by substituting a readily available isotopically labeled reagent for a non-isotopically labeled reagent.
  • the compounds of formula (I), (lb), (Ic) and (Id) or salts thereof are not isotopically labelled.
  • alkyl means carbon chains which may be linear or branched.
  • alkyl groups include ethyl, propyl, isopropyl, butyl, sec- and tert-butyl.
  • Such alkyl groups may in some embodiments be substituted with one or more halo groups, particularly fluoro.
  • a CF3 group may be replaced by SF5 without departing from the present invention.
  • heteroaryl rings means 5- or 6-membered N-containing heteroaryl rings optionally containing one or more, e.g. 1 , 2 or 3, additional heteroatoms selected from N, O and S, or fused bicyclic systems optionally containing one or more, e.g., 1 , 2, 3, 4 or 5, heteroatoms selected from N, O and S.
  • heteroaryl rings examples include pyrrolyl, pyrazolyl, imidazolyl, oxazolyl, isoxazolyl, thiazolyl, isothiazolyl, triazolyl, oxadiazolyl, thiadiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl C4.
  • cycloalkylalkyl wherein the cycloalkylalkyl is optionally substituted by C ⁇ .4 alkyl, triazinyl, tetrazolyl and
  • Compounds described herein may contain one or more asymmetric centers and may thus give rise to diastereomers and optical isomers.
  • the present invention includes all such possible diastereomers as well as their racemic mixtures, their substantially pure resolved enantiomers, all possible geometric isomers, and pharmaceutically acceptable salts thereof.
  • the present invention includes all stereoisomers of the compounds of the invention and pharmaceutically acceptable salts thereof. Further, mixtures of stereoisomers as well as isolated specific stereoisomers are also included. During the course of the synthetic procedures used to prepare such compounds, or in using racemization or epimerization procedures known to those skilled in the art, the products of such procedures can be a mixture of stereoisomers.
  • the present invention includes any possible tautomers and pharmaceutically acceptable salts thereof, and mixtures thereof, except where specifically drawn or stated otherwise.
  • the present invention includes any possible solvates and polymorphic forms.
  • a type of a solvent that forms the solvate is not particularly limited so long as the solvent is pharmacologically acceptable.
  • water, ethanol, propanol, acetone or the like can be used.
  • salts derived from such inorganic bases include aluminum, ammonium, calcium, copper (ic and ous), ferric, ferrous, lithium, magnesium, potassium, sodium, zinc and the like salts. Particularly preferred are the ammonium, calcium, magnesium, potassium and sodium salts.
  • Salts derived from pharmaceutically acceptable organic non-toxic bases include salts of primary, secondary, and tertiary amines, as well as cyclic amines and substituted amines such as naturally occurring and synthesized substituted amines.
  • organic non-toxic bases from which salts can be formed include arginine, betaine, caffeine, choline, N',N'-dibenzylethylenediamine, diethylamine, 2-diethylaminoethanol, 2- dimethylaminoethanol, ethanolamine, ethylenediamine, N-ethylmorpholine, N- ethylpiperidine, glucamine, glucosamine, histidine, hydrabamine, isopropylamine, lysine, methylglucamine, morpholine, piperazine, piperidine, polyamine resins, procaine, purines, theobromine, triethyl amine, trimethylamine, tripropylamine, tromethamine and the like.
  • the compound of the invention When the compound of the invention is basic, its corresponding salt can be conveniently prepared from pharmaceutically acceptable non-toxic acids, including inorganic and organic acids.
  • acids include, for example, acetic, benzenesulfonic, benzoic, camphorsulfonic, citric, ethanesulfonic, fumaric, gluconic, glutamic, hydrobromic, hydrochloric, isethionic, lactic, maleic, malic, mandelic, methanesulfonic, mucic, nitric, pamoic, pantothenic, phosphoric, succinic, sulfuric, tartaric, p-toluenesulfonic, trifluoroacetic acid and the like.
  • the compounds of the invention are intended for pharmaceutical use they are preferably provided in substantially pure form, for example at least 60% pure, more suitably at least 75% pure, especially at least 98%> pure (% are on a weight for weight basis).
  • the compounds of formula (I) can be prepared as described below, wherein R1, R ⁇ , R 3 , R 4 , R 5 , R 6 , R 7 , R 8 , R 9 , R 10 , R 1 1 , A, X, Y, Z, m, n, p, q and r are as defined for formula (I).
  • PG is a protecting group
  • LG is a leaving group
  • Hal is halogen.
  • Compounds of formula (I) can be prepared as outlined in Scheme 1.
  • Compounds of formula (IV) can be prepared by SN AT displacement of suitable haloaromatic compounds of formula (II) with amines of formula (III) under standard conditions, for example, DBU and DMSO at 80 - 100°C.
  • compounds of formula (IV) can be prepared by reaction of suitable haloaromatic compounds of formula (II) with amines of formula (III) under Buchwald-Hartwig conditions, such as, Pd 2 (dba) 3 and XANTPHOS or
  • Compounds of formula (II), where X is O can be prepared as outlined in Scheme 2.
  • Alcohols of formula (V) can be treated with hydroxyaryl compounds of formula (VI) under standard Mitsonobu conditions, for example, using diisopropylazodicarboxylate and triphenylphosphine in a suitable solvent such as toluene.
  • compounds of formula (II) where X is O can be prepared from alcohols of formula (V) via formation of a suitable leaving group.
  • Suitable leaving groups, such as mesylates of formula (VII) can be prepared using standard conditions, such as, methanesulfonyl chloride and triethylamine in DCM.
  • Compounds of formula (II) can be prepared from mesylates of formula (VII) and hydroxyaryls of formula (VI) under standard conditions, for example, using a base such as CsF or K 2 C0 3 in a suitable solvent such as DMA or DMF at 60 - 80°C.
  • Compounds of formula (IX) can be prepared as outlined in Scheme 4.
  • Compounds of formula (XI) can be prepared by SNA T displacement of suitable haloaromatic compounds of formula (X) with amines of formula (III) under the standard conditions outlined above.
  • Compounds of formula (IX) can be prepared from compounds of formula (XI) by reduction under standard conditions using a catalyst such as 10% palladium on carbon under an atmosphere of hydrogen in a suitable solvent such as methanol or ethanol.
  • Compounds of formula (IV), where X is CR ⁇ H and ⁇ is NR ⁇ , and where R ⁇ is hydrogen, can be prepared as outlined in Scheme 6.
  • Compounds of formula (XIV) can be prepared from alcohols of formula (XII) under standard Mitsonobu conditions using, for example, diisopropylazodicarboxylate and triphenylphosphine in a suitable solvent such as toluene.
  • Compounds of formula (XIV) can be converted to the amine by reaction with hydrazine hydrate in a solvent such as EtOH to afford amines of formula (XV).
  • Compounds of formula (IV) can be prepared by reacting amines of formula (XV) with carbonyl compounds of formula (XVI), under standard reductive amination conditions as outlined above.
  • Carbonyl compounds of formula (XVI) can be prepared as outlined in Scheme 7.
  • Compounds of formula (XVIII) can be prepared by SN ⁇ r displacement of suitable, readily available haloaromatic compounds of formula (XVII) by amines of formula (III) under the standard conditions outlined above.
  • Compounds of formula (XVIII) can be reduced to alcohols of formula (XIX) using, for example, a standard reducing agent such as DIBAL-H in a solvent such as THF.
  • Carbonyl compounds of formula (XVI) can be prepared from alcohols of formula (XIX) by oxidation under standard conditions using a reagent such as Dess-Martin Periodinane in a solvent such as DCM.
  • a reagent such as Dess-Martin Periodinane
  • carbonyl compounds of formula (XVI) can be prepared by SN ⁇ r displacement of suitable readily available haloaromatic compounds of formula (XX) by amines of formula (III) under the standard conditions
  • the compounds of formula (I) may be prepared singly or as compound libraries comprising at least 2, for example 5 to 1,000, compounds and more preferably 10 to 100 compounds of formula (I).
  • Compound libraries may be prepared by a combinatorial "split and mix” approach or by multiple parallel syntheses using either solution or solid phase chemistry, using procedures known to those skilled in the art.
  • the compounds of the invention are useful as GPR119 agonists, e.g. for the treatment and/or prophylaxis of diabetes.
  • the compounds of the invention will generally be administered in the form of a pharmaceutical composition.
  • the compounds of the invention may also be useful as dual GPR119 agonists/DPP- IV inhibitors, e.g. for the treatment and/or prophylaxis of diabetes.
  • the compounds of the invention will generally be administered in the form of a pharmaceutical composition.
  • the invention also provides a compound of the invention, or a pharmaceutically acceptable salt thereof, for use as a pharmaceutical.
  • the invention also provides a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of the invention, in combination with a pharmaceutically acceptable carrier.
  • composition is comprised of a pharmaceutically acceptable carrier and a non-toxic therapeutically effective amount of a compound of the invention, or a
  • the invention also provides a pharmaceutical composition for the treatment of disease by modulating GPR119 and optionally DPP-IV, resulting in the prophylactic or therapeutic treatment of diabetes, comprising a pharmaceutically acceptable carrier and a non-toxic therapeutically effective amount of compound of the invention, or a pharmaceutically acceptable salt thereof.
  • compositions may optionally comprise other therapeutic ingredients or adjuvants.
  • the compositions include compositions suitable for oral, rectal, topical, and parenteral (including subcutaneous, intramuscular, and intravenous)
  • compositions may be conveniently presented in unit dosage form and prepared by any of the methods well known in the art of pharmacy.
  • the compounds of the invention can be combined as the active ingredient in intimate admixture with a
  • the carrier may take a wide variety of forms depending on the form of preparation desired for administration, e.g. oral or parenteral (including intravenous).
  • compositions can be presented as discrete units suitable for oral administration such as capsules, cachets or tablets each containing a predetermined amount of the active ingredient. Further, the compositions can be presented as a powder, as granules, as a solution, as a suspension in an aqueous liquid, as a non-aqueous liquid, as an oil -in- water emulsion, or as a water-in-oil liquid emulsion.
  • the compound of the invention, or a pharmaceutically acceptable salt thereof may also be administered by controlled release means and/or delivery devices.
  • the compositions may be prepared by any of the methods of pharmacy.
  • such methods include a step of bringing into association the active ingredient with the carrier that constitutes one or more necessary ingredients.
  • the compositions are prepared by uniformly and intimately admixing the active ingredient with liquid carriers or finely divided solid carriers or both. The product can then be conveniently shaped into the desired presentation.
  • the compounds of the invention can also be included in pharmaceutical compositions in combination with one or more other therapeutically active compounds.
  • the pharmaceutical carrier employed can be, for example, a solid, liquid, or gas.
  • solid carriers include lactose, terra alba, sucrose, talc, gelatin, agar, pectin, acacia, magnesium stearate, and stearic acid.
  • liquid carriers are sugar syrup, peanut oil, olive oil, and water.
  • gaseous carriers include carbon dioxide and nitrogen.
  • any convenient pharmaceutical media may be employed.
  • water, glycols, oils, alcohols, flavoring agents, preservatives, coloring agents, and the like may be used to form oral liquid preparations such as suspensions, elixirs and solutions; while carriers such as starches, sugars, microcrystalline cellulose, diluents, granulating agents, lubricants, binders, disintegrating agents, and the like may be used to form oral solid preparations such as powders, capsules and tablets. Because of their ease of administration, tablets and capsules are the preferred oral dosage units whereby solid pharmaceutical carriers are employed.
  • tablets may be coated by standard aqueous or nonaqueous techniques.
  • a tablet containing the composition of this invention may be prepared by
  • Compressed tablets may be prepared by compressing, in a suitable machine, the active ingredient in a free-flowing form such as powder or granules, optionally mixed with a binder, lubricant, inert diluent, surface active or dispersing agent. Molded tablets may be made by molding in a suitable machine, a mixture of the powdered compound moistened with an inert liquid diluent. Each tablet preferably contains from about 0.05mg to about 5g of the active ingredient and each cachet or capsule preferably containing from about 0.05mg to about 5 g of the active ingredient.
  • a formulation intended for the oral administration to humans may contain from about 0.5mg to about 5g of active agent, compounded with an appropriate and convenient amount of carrier material which may vary from about 5 to about 95 percent of the total composition.
  • Unit dosage forms will generally contain between from about lmg to about 2g of the active ingredient, typically 25mg, 50mg, lOOmg, 200mg, 300mg, 400mg, 500mg, 600mg, 800mg, or lOOOmg.
  • compositions of the present invention suitable for parenteral administration may be prepared as solutions or suspensions of the active compounds in water.
  • a suitable surfactant can be included such as, for example, hydroxypropylcellulose.
  • Dispersions can also be prepared in glycerol, liquid polyethylene glycols, and mixtures thereof in oils. Further, a preservative can be included to prevent the detrimental growth of microorganisms .
  • compositions of the present invention suitable for injectable use include sterile aqueous solutions or dispersions.
  • the compositions can be in the form of sterile powders for the extemporaneous preparation of such sterile injectable solutions or dispersions.
  • the final injectable form must be sterile and must be effectively fluid for easy syringability.
  • the pharmaceutical compositions must be stable under the conditions of manufacture and storage; thus, preferably should be preserved against the contaminating action of microorganisms such as bacteria and fungi.
  • the carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (e.g. glycerol, propylene glycol and liquid polyethylene glycol), vegetable oils, and suitable mixtures thereof.
  • compositions of the present invention can be in a form suitable for topical use such as, for example, an aerosol, cream, ointment, lotion, dusting powder, or the like. Further, the compositions can be in a form suitable for use in transdermal devices. These formulations may be prepared, using a compound of the invention, or a
  • a cream or ointment is prepared by admixing hydrophilic material and water, together with about 5wt% to about 10wt% of the compound, to produce a cream or ointment having a desired consistency.
  • compositions of this invention can be in a form suitable for rectal administration wherein the carrier is a solid. It is preferable that the mixture forms unit dose suppositories. Suitable carriers include cocoa butter and other materials commonly used in the art. The suppositories may be conveniently formed by first admixing the composition with the softened or melted carrier(s) followed by chilling and shaping in molds.
  • the pharmaceutical formulations described above may include, as appropriate, one or more additional carrier ingredients such as diluents, buffers, flavoring agents, binders, surface-active agents, thickeners, lubricants, preservatives (including anti-oxidants) and the like.
  • additional carrier ingredients such as diluents, buffers, flavoring agents, binders, surface-active agents, thickeners, lubricants, preservatives (including anti-oxidants) and the like.
  • additional carrier ingredients such as diluents, buffers, flavoring agents, binders, surface-active agents, thickeners, lubricants, preservatives (including anti-oxidants) and the like.
  • additional carrier ingredients such as diluents, buffers, flavoring agents, binders, surface-active agents, thickeners, lubricants, preservatives (including anti-oxidants) and the like.
  • other adjuvants can be included to render the formulation isotonic with the blood of the intended recipient
  • compositions containing a compound of the invention, or pharmaceutically acceptable salts thereof, may also be prepared in powder or liquid concentrate form.
  • dosage levels on the order of O.Olmg/kg to about 150mg/kg of body weight per day are useful in the treatment of the above -indicated conditions, or alternatively about 0.5mg to about 7g per patient per day.
  • obesity may be effectively treated by the administration of from about 0.01 to 50mg of the compound per kilogram of body weight per day, or alternatively about 0.5mg to about 3.5g per patient per day.
  • the compounds of the invention may be used in the treatment of diseases or conditions in which GPR119 and optionally DPP-IV play a role.
  • the invention also provides a method for the treatment of a disease or condition in which GPR119 and optionally DPP-IV play a role comprising a step of administering to a subject in need thereof an effective amount of a compound of the invention, or a
  • Such diseases or conditions diabetes, obesity, impaired glucose tolerance, insulin resistance and diabetic complications such as neuropathy, nephropathy, retinopathy, cataracts, cardiovascular complications and dyslipidaemia). And the treatment of patients who have an abnormal sensitivity to ingested fats leading to functional dyspepsia.
  • the compounds of the invention may also be used for treating metabolic diseases such as metabolic syndrome (syndrome X), impaired glucose tolerance, hyperlipidemia, hypertriglyceridemia, hypercholesterolemia, low HDL levels and
  • the invention also provides a method for the treatment of type II diabetes, comprising a step of administering to a patient in need thereof an effective amount of a compound of the invention, or a pharmaceutically acceptable salt thereof.
  • the invention also provides a method for the treatment of obesity, metabolic syndrome (syndrome X), impaired glucose tolerance, hyperlipidemia, hypertriglyceridemia, hypercholesterolemia, low HDL levels or hypertension comprising a step of administering to a patient in need thereof an effective amount of a compound of the invention, or a
  • the invention also provides a compound of the invention, or a pharmaceutically acceptable salt thereof, for use in the treatment of a condition as defined above.
  • the invention also provides the use of a compound of the invention, or a
  • treatment includes both therapeutic and prophylactic treatment.
  • the compounds of the invention may exhibit advantageous properties compared to known compounds or combination therapies for the treatment of diabetes.
  • the compounds of the invention, or pharmaceutically acceptable salts thereof, may be administered alone or in combination with one or more other therapeutically active compounds.
  • the other therapeutically active compounds may be for the treatment of the same disease or condition as the compounds of the invention or a different disease or condition.
  • the therapeutically active compounds may be administered simultaneously, sequentially or separately.
  • the compounds of the invention may be administered with other active compounds for the treatment of obesity and/or diabetes, for example insulin and insulin analogs, gastric lipase inhibitors, pancreatic lipase inhibitors, sulfonyl ureas and analogs, biguanides, a2 agonists, glitazones, PPAR- ⁇ agonists, mixed PPAR- ⁇ / ⁇ agonists, RXR agonists, fatty acid oxidation inhibitors, a-glucosidase inhibitors, ⁇ -agonists, phosphodiesterase inhibitors, lipid lowering agents, glycogen phosphorylase inhibitors, antiobesity agents e.g.
  • active compounds for the treatment of obesity and/or diabetes for example insulin and insulin analogs, gastric lipase inhibitors, pancreatic lipase inhibitors, sulfonyl ureas and analogs, biguanides, a2 agonists, glitazones, PPAR- ⁇ agonists
  • pancreatic lipase inhibitors MCH-1 antagonists and CB-1 antagonists (or inverse agonists), amylin antagonists, lipoxygenase inhibitors, somostatin analogs, glucokinase activators, glucagon antagonists, insulin signalling agonists, PTP1B inhibitors, gluconeogenesis inhibitors, antilypolitic agents, GSK inhibitors, galanin receptor agonists, anorectic agents, CCK receptor agonists, leptin, serotonergic/dopaminergic antiobesity drugs, reuptake inhibitors e.g.
  • sibutramine CRF antagonists, CRF binding proteins, thyromimetic compounds, aldose reductase inhibitors, glucocorticoid receptor antagonists, NHE-1 inhibitors or sorbitol dehydrogenase inhibitors.
  • Combination therapy comprising the administration of a compound of the invention, or a pharmaceutically acceptable salt thereof, and at least one other agent represents a further aspect of the invention.
  • the present invention also provides a method for the treatment of diabetes in a mammal, such as a human, which method comprises administering an effective amount of a compound of the invention, or a pharmaceutically acceptable salt thereof, and another agent, to a mammal in need thereof.
  • the invention also provides the use of a compound of the invention, or a
  • the invention also provides the use of a compound of the invention, or a
  • the compound of the invention, or a pharmaceutically acceptable salt thereof, and the other agent(s) may be co-administered or administered sequentially or separately.
  • Co-administration includes administration of a formulation which includes both the compound of the invention, or a pharmaceutically acceptable salt thereof, and the other agent(s), or the simultaneous or separate administration of different formulations of each agent. Where the pharmacological profiles of the compound of the invention, or a pharmaceutically acceptable salt thereof, and the other agent(s) allow it, coadministration of the two agents may be preferred.
  • the invention also provides the use of a compound of the invention, or a
  • the invention also provides a pharmaceutical composition
  • a pharmaceutical composition comprising a compound of the invention, or a pharmaceutically acceptable salt thereof, and another antiobesity agent, and a pharmaceutically acceptable carrier.
  • the invention also encompasses the use of such compositions in the methods described above.
  • LCMS -method 2 data were obtained as follows: Xbridge C 18 column (2.1 x 50mm, 2.5 ⁇ , flow rate 0.8mL/min) eluting with an MeCN-lOmM NH 4 HCO 3 solution over 1.5 min with UV detection at 215 - 350nm. Gradient information: 0-0.8 min: 98% MeCN 2%
  • the mass spectra were obtained using an electrospray ionisation source in the positive (ES + ) mode.
  • LCMS-method 6 data were obtained as follows: Phenomenex Kinetex CI 8 column (3.0x30mm, 2.6 ⁇ , flow rate l .OmL/min) eluting with a H 2 0-MeCN solution containing 0.1% HC0 2 H over 2 min with UV detection at 220 nm. Gradient information: 0.0-0.1 min 2% MeCN 98% H 2 0 to 5% MeCN 95% H 2 0; 0.1-1.50 min: Ramp up to 100% MeCN; 1.5- 1.75min: Hold at 100% MeCN; 1.75-1.8min: 100% MeCN to 2% MeCN 98% H 2 0; 1.8-2.0 min: Hold at 2% MeCN 98% H 2 0. The mass spectra were obtained using an electrospray ionisation source in either the positive (ES + ) or negative (ES ⁇ ) ion modes.
  • LCMS-method 7 data were obtained as follows: Waters Atlantis CI 8 column (3.0 x 20mm, 3 ⁇ , flow rate l .OmL/min) eluting with H 2 0-MeCN solution containing 0.1% HC0 2 H over 6 min with UV detection at 220 nm. Gradient information: 0.00-0.30 min: 100% H 2 0; 0.30-4.25 min: 100% H 2 0 to 90% MeCN 10% H 2 0; 4.25-4.40 min: 90% H 2 0 to 10% MeCN to 100% MeCN; 4.40-4.90 min: hold at 100% MeCN; 4.90-5.00 min: 100% MeCN to 100% H 2 0; 5.00-6.00 min: hold at 100% H 2 0 for re-equilibration.
  • the mass spectra were obtained using an electrospray ionisation source in the positive (ES + ) mode.
  • LCMS-method 8 data were obtained as follows: Waters Xbridge C18 column (4.6 x 50mm, 3.5 ⁇ , flow rate 1.5 mL/min) eluting with H 2 0-MeCN solution containing 0.2% NH 3 OH over 5.5 min with UV detection at 220 nm. Gradient information: 0.00-0.30 min: 95% H 2 0, 5% MeCN; 0.30-3.90 min: 100% H 2 0 to 100% MeCN; 3.90-4.90 min: hold at 100% MeCN; 4.90-5.00 min: 100% MeCN to 5% MeCN 95% H 2 0; 5.00-5.50 min: hold at 95% H 2 0, 5%) MeCN for re-equilibration. The mass spectra were obtained using an electrospray ionisation source in the positive (ES + ) mode.
  • Standard method Gemini-NX C 18 column (21.2 x 100mm, 5 ⁇ , flow rate 20mL/min) eluting with a H 2 0-MeCN solution containing 0.1% HC0 2 H using a 10 minute gradient with UV detection at 220 nm.
  • MDP Mass-directed purification was carried out using either an acidic or basic method.
  • Acidic method XBridge Prep C 18 column (19 x 50mm, 5 ⁇ , flow rate 20mL/min) eluting with a H 2 0-MeCN solution containing 0.1% HC0 2 H using an 8 minute gradient with
  • UV detection at 220 nm and additional mass ion detection UV detection at 220 nm and additional mass ion detection.
  • DCM Dichloromethane
  • DCE 1 ,2-dichloroethane
  • DEA Diethylamine
  • DEAD
  • DME 1 ,2-Dimethoxyethane
  • DMF Dimethylformamide
  • DIPEA Diisopropylethylamine
  • EtOAc Ethyl Acetate; h: hour(s); HBTU: 0-(benzotriazol-l-yl)N,N,N'N'- tetramethyluronium hexafluorophosphate; HC1: Hydrochloric acid; HC0 2 H: Formic acid; H 2 0: Water; HOAT: l-Hydroxy-7-azabenzotriazole; HOBt: 1 -Hydro xybenzotriazole monohydrate; HPLC: High performance liquid chromatography; H 2 S0 4 : Sulfuric acid; IH: Isohexane; IMS: Industrial methylated spirit; IPA: Isopropyl alcohol; M: Molar; MDP:
  • reaction mixture was partitioned between DCM (lOOmL) and 1M HCl (150mL), then the organic phase was separated and concentrated in vacuo to afford the intermediate product methanesulfonic acid l-(3- isopropyl[ 1 ,2,4]oxadiazol-5-yl)piperidin-4-ylmethyl ester.
  • the following compounds were prepared from the appropriate piperidine starting material employing the procedure outlined in Preparation 12:
  • TBAD (51mg, 0.22mmol) was added and the mixture was stirred at r.t. for 16 h. before being heated to 40 °C for 2 h. Further portions of PS-triphenylphosphine (1.94 mmol/g loading; 113mg, 0.22mmol) and TBAD (51mg, 0.22mmol) were added, then the reaction continued to heat at 40 °C for 2 h., before being allowed to stand at r.t. for 60 h. The reaction mixture was filtered, the resin washed with MeOH, and the filtrate was concentrated in vacuo. The resulting residue was partitioned between DCM and water and passed through a phase separator.
  • Triethylamine (40 ⁇ , 0.3mmol) and methanesulfonyl chloride (20 ⁇ ⁇ , 0.2mmol) were added to a solution of [l-(3-ethyl-[l,2,4]triazolo[4,3-c]pyrimidin-7-yl)piperidin-4- yljmethanol (Preparation 110, 37mg, 0.14mmol) in DCM (lmL) and the reaction was shaken at r.t. for 2 h. The mixture was washed with 1M HC1 (lmL) and passed through a phase separator. The aqueous phase was washed with DCM, then the organic fractions were combined and concentrated in vacuo.
  • Preparation 150 ((3R,45)-4-(2,5-Difluor ophenyl)- 1- ⁇ 5- [l-(5-ethyl- [ 1 ,2,4] oxadiazol-3- yl)piperidin-4-ylmethox ]pyrimidin-2-yl ⁇ pyrrolidin-3-yl)carbamic acid terf-butyl ester
  • reaction mixture Upon cooling, the reaction mixture was poured into water (1500mL) and diluted with EtOAc (lOOOmL) and brine (500mL). The layers were separated and the aqueous extracted with EtOAc (2 x 750mL). The combined organics were washed with watenbrine (1 : 1 , 4 x 500mL), dried (Na 2 S0 4 ), filtered and concentrated in vacuo.
  • reaction mixture was poured into water (250mL) and extracted with EtOAc (2 x lOOmL). The combined organic extracts were washed with brine (2 x 50mL), dried (MgS0 4 ), filtered and concentrated in vacuo.
  • reaction mixture was poured into water and extracted with DCM (3 x). The combined organic extracts were washed with brine, dried (MgS0 4 ), filtered and concentrated in vacuo to afford crude trans-3-tert-butoxycarbonylamino-4-methanesulfonyloxy-pyrrolidine-l- carboxylic acid tert-butyl ester.
  • the crude product was dissolved in THF (40mL), purged with argon and cooled to 0°C. Sodium hydride (0.53g, 13.2mmol) was added portion wise over 5 minutes and the resulting reaction mixture was poured into water and extracted with DCM.
  • Preparation 196 (5)- 1- [1 -(3-Isopropyl- [1 ,2,4] oxadiazol-5-yl)piperidin-4-yl] ethanol
  • Preparation 197 3-Chloro-6- ⁇ (S)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4- yl]-ethoxy ⁇ -pyridazine
  • Preparation 200 ((3R,45)-4-(2,5-Difluoro-phenyl)-l- ⁇ 5-[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)-piperidin-4-ylmethoxy]-4-methoxy-pyrimidin-2-yl ⁇ -pyrrolidin-3-yl)-carbamic acid tert-butyl ester
  • Preparation 201 4-[(S)-l-(2-Chloro-pyrimidin-5-yloxy)-ethyl]-piperidine-l-carboxylic acid isopropyl ester and 4-[(S)-l-(2-Bromo-pyrimidin-5-yloxy)-ethyl]-piperidine-l- carboxylic acid isopropyl ester
  • Preparatino 218 [ l-(3-Isopropyl- [1 2,4] oxadiazol-5-ylmethyl)-azetidin-3-yl] -methanol
  • Triethylphosphonoacetate (5.38g, 24.0mmol) was added dropwise to a solution of sodium hydride (l .lg, 26.0mmol) in THF (120mL) at 0°C and the resulting reaction mixture was stirred at 0°C for 30 min.
  • a solution of 4-methyl-pyridine-2-carbaldehyde (1.5g, 12mmol) in THF (30mL) was added dropwise and the resulting reaction mixture was allowed to warm to r.t. over 1.5 h.
  • the reaction mixture was poured into water and extracted with EtOAc (3 x). The combined organic extracts were dried (MgS0 4 ), filtered and concentrated in vacuo. The remainder was purified by column chromatography

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Abstract

Therapeutic compounds are disclosed having the general formula (I) that are useful for the treatment of metabolic disorders, including type II diabetes. The compounds have activity as agonists of GPR119. Compounds having the stereochemistry of formula (la) may also demonstrate DPP-IV inhibitory activity.

Description

CYCLOAMINO DERIVATIVES AS GPR119 ANTAGONISTS
BACKGROUND OF THE INVENTION
The present invention is directed to therapeutic compounds useful for the treatment of metabolic disorders including type II diabetes. In particular, the present invention is directed to compounds which have activity as agonists of GPR119.
Drugs aimed at the pathophysiology associated with non-insulin dependent type II diabetes have many potential side effects and do not adequately address the dyslipidaemia and hyperglycaemia in a high proportion of patients. Treatment is often focused at individual patient needs using diet, exercise, hypoglycaemic agents and insulin, but there is a continuing need for novel antidiabetic agents, particularly ones that may be better tolerated with fewer adverse effects.
Similarly, metabolic syndrome (syndrome X) places people at high risk of coronary artery disease, and is characterized by a cluster of risk factors including central obesity (excessive fat tissue in the abdominal region), glucose intolerance, high triglycerides and low HDL cholesterol, and high blood pressure. Myocardial ischemia and microvascular disease is an established morbidity associated with untreated or poorly controlled metabolic syndrome.
Obesity is characterized by an excessive adipose tissue mass relative to body size. Clinically, body fat mass is estimated by the body mass index (BMI; weight(kg)/height(m) ), or waist circumference. Individuals are considered obese when the BMI is greater than 30 and there are established medical consequences of being overweight. It has been an accepted medical view for some time that an increased body weight, especially as a result of abdominal body fat, is associated with an increased risk for diabetes, hypertension, heart disease, and numerous other health complications, such as arthritis, stroke, gallbladder disease, muscular and respiratory problems, back pain and even certain cancers.
There is a continuing need for novel antidiabetic agents, particularly ones that are well tolerated with few adverse effects and in particular for agents which are weight neutral or preferably cause weight loss.
GPR119 (previously referred to as GPR116) is a GPCR identified as SNORF25 in WO00/50562 which discloses both the human and rat receptors, US 6,468,756 also discloses the mouse receptor (accession numbers: AAN95194 (human), AAN95195 (rat) and
ANN95196 (mouse)). In humans, GPR119 is expressed in the pancreas, small intestine, colon and adipose tissue. The expression profile of the human GPR119 receptor indicates its potential utility as a target for the treatment of diabetes.
GPR119 agonists have been shown to stimulate the release of GLP-1 from the GI tract. In doing so, GPR119 agonists (1) enhance glucose-dependent insulin release from the pancreas leading to improvements in oral glucose tolerance; (2) attenuate disease progression by increasing β-cell cAMP concentrations; and (3) induce weight loss possibly through GLP- 1 's ability to reduce food intake.
International Patent Applications WO 2005/061489, WO 2006/070208,
WO 2006/067532, WO 2006/067531, WO 2007/003960, WO 2007/003961,
WO 2007/003962, WO 2007/003964, WO 2007/116229, WO 2007/116230,
WO 2008/081204, WO 2008/081205, WO 2008/081206, WO 2008/081207,
WO 2008/081208, WO 2009/050522, WO 2009/050523, WO 2010/001166,
WO 2010/004343, WO 2010/004344, WO 2010/004345, WO 2010/004346,
WO 2010/004347 and WO 2010/004348 disclose GPR119 receptor agonists.
Dipeptidyl peptidase IV (DPP-IV) is a ubiquitous, yet highly specific, serine protease that cleaves N-terminal dipeptides from polypeptides with L-proline or L-alanine at the penultimate position. Studies with DPP-IV inhibitors show the principle role of DPP-IV is in the inactivation GLP-1. By extending the duration of action of GLP-1, insulin secretion is stimulated, glucagon release inhibited, and gastric emptying slowed. DPP-IV inhibitors are of use for the treatment of type II diabetes, examples of DPP-IV inhibitors include vildagliptin, sitagliptin, alogliptin and saxagliptin.
The possibility of using a combination of a GPR119 agonist and a DPP-IV has been suggested, however this requires the administration of two separately formulated products to the patient or the co -formulation of two active ingredients with the inherent problems of achieving compatability in the physicochemical and pharmacokinetic and pharmacodynamic properties of the two active ingredients. WO 2009/034388 discloses dual GPR119 agonists and DPP-IV inhibitors. The compounds of the invention may also have dual activity as agonists of GPR119 and inhibitors of DPP-IV. SUMMARY OF THE INVENTION
According to the present invention there are provided compounds of formula (I) and pharmaceutically acceptable salts thereof:
Figure imgf000005_0001
(I)
wherein A is a para-substituted phenyl or a para-substituted 6-membered heteroaryl ring containing one to three nitrogen atoms;
R1 is hydrogen, halo, cyano, C\ _4alkyl, C\ .4 haloalkyl, C\ .4 alkoxy or C2. galkoxyalkyl;
2 is:
Figure imgf000005_0002
s phenyl optionally substituted by one or more halo, methyl, halomethyl or methoxy groups, or pyridyl, N-pyridonyl or N-pyrazolyl, optionally substituted by one or more halo, Ci _2 alkyl or halomethyl groups,
R^ is independently halo, methyl or halomethyl;
Z is -C(0)OR4, -C(0)R4 , -S(0)2R4 , -S(0)2N(Ci_3alkyl)R4, heteroaryl or
-CH2-heteroaryl, and when p and q are both 0, Z can also be -CH2-phenyl, which phenyl is optionally substituted by one or two groups independently selected from C\ .4 alkyl, C\ .4 haloalkyl and halo;
R4 is aryl, heteroaryl, C2-6alkyl, C3_6cycloalkyl, C4_6heterocyclyl, heterocyclylCi . 4alkyl, C2_6alkoxyalkyl, arylCj _4alkyl, heteroarylC^ .4 alkyl or C4_ cycloalkylCi _4alkyl, which cycloalkylCj .4 alkyl is optionally substituted by C\ .4 alkyl;
wherein when Z is or includes heteroaryl or when R4 is or includes aryl or heteroaryl, said aryl or heteroaryl may optionally be substituted by one or two groups selected from halo, cyano, SF5, C\ .4 alkyl, C\ _4haloalkyl, C\ .5 hydroxyalkyl, Ci _4alkoxy, C2.
4alkoxyalkyl, heterocyclyl, heterocyclylCi _4alkyl, heteroarylC 1.4 alkyl, Ci _4alkylamino,
Ci _4alkylaminoC 1.4 alkyl, C3_6cycloalkyl and -(C 1.3 alkyl)-(C3_6 cycloalkyl), wherein the cycloalkyl and alkyl groups are each optionally substituted by one or two groups
independently selected from Ci .4 alkyl, hydroxy or halo;
X is selected from CR5H, O, and NR6 in which R5 and R6 are independently hydrogen or C\ _2alkyl;
Y is or W-Υΐ, where W is a 5 membered heteroaryl ring containing one or more heteroatoms selected from N, O and S, and γΐ is selected from CR7H, O and NR8, in which R^ is hydrogen, Ci _2alkyl,C2-6alkoxyalkyl or heterocyclyl; wherein said Ci _2alkyl can be optionally substituted by cyano, hydroxy or halo and R8 is C\ _4alkyl or C\ _4cycloalkyl, provided that when Y is W-Y1, X is O and Y1 is CR7H, when Y1 is O or NR8, X is CR5H and when X is O or NR6, Y1 is CR7H;
each of R^ and R^ is independently H, halo, C\ _2alky, C\ _2haloalkyl,
C\ _3alkoxy or hydroxy; or R9 and are joined to form an azabicyclo[3.3.1]nonane, a 3- oxa-7-azabicyclo[3.3.1]nonane or an azabicyclo[3.2.1]octane;
R11 is H, halo, Ci _2alkyl, C\ _2haloalkyl or Ci _3alkoxy;
m is 0, 1 or 2;
n is 0 or 1 ;
p and q are each 0, 1 or 2, provided that 0 < p+q < 2; and
r is 1 or 2.
The compounds of the invention have activity as agonists of GPRl 19 and may also be inhibitors of DPP-IV and are therefore useful for the treatment of metabolic disorders including type II diabetes.
DETAILED DESCRIPTION OF THE INVENTION
R^ is suitably hydrogen or methyl.
R6 is suitably hydrogen.
R8 is suitably methyl. Suitably R1 1 may be H. In some embodiments, R11 may be alkoxy, e.g., methoxy.
Alternatively, R11 may be halo, including F.
In some embodiments, the compounds of the invention may suitably have the stereochemistry defined below (compounds of formula (la)); such compounds may demonstrate DPP-IV inhibitory activity:
Figure imgf000007_0001
(la)
p and q are independently 0, 1 or 2 provided that p+q does not exceed 2, i.e., forming a 4-, 5- or 6-membered ring. In some embodiments, p and q may be the same, i.e., forming a 4- or 6-membered ring. Suitably p and q are both 1.
R9 and R10 may be the same or different from one another. Suitably R9 and RIO are both H. Where p (or q) is 2, the two R^ (or RIO) groups may be the same as or different from one another. Suitably where one of R^ (or RIO) is other than H, the other one may be H.
A may be a para linked 6-membered heteroaromatic ring containing one or two nitrogen atoms. A is suitably pyridine, pyrimidine, pyrazine or pyridazine, typically pyridine or pyrimidine, e.g., 2- or 3-pyridyl or 2- or 5-pyrimidinyl, where the 2-, 3- or 5- refers to the point of attachment of the pyrrolidine or piperidine ring.
In one sub-class of compounds according to the invention, Y is γΐ.
Within this sub-class, suitably γΐ may be O and X may be CR5H.
Alternatively, X may be O and γΐ may suitably be CR^H. In such embodiments, th refore, the compounds of the invention may have the formula:
Figure imgf000008_0001
(lb).
In another alternative, Y1 may be NR8 and X may be CR5H.
In yet another alternative X may be NR^ and γΐ may be CR7H.
In another sub-class of the compounds of the invention, Y may be W-Υΐ, where γΐ is CR^H bonded directly to X and X is O.
W is typically oxadiazolyl. In such embodiments, therefore, the compounds of the invention may suitably have the formula:
Figure imgf000008_0002
(Ic) In each case A may be selected from:
Figure imgf000009_0001
In some embodiments, Z may suitably be -C(0)OR4, -C(0)R4 or -S(0)2R4.
R4 may suitably be alkyl, C4.5 alkoxyalkyl, cycloalkyl or cycloalkylalkyl, wherein said cycloalkylalkyl is optionally substituted by C \ .4 alkyl. Typically, R4 may be propyl, especially isopropyl.
Alternatively, Z may be a heteroaryl group that may optionally be substituted by one or two groups selected from C i .4 alkyl, C i .4 haloalkyl, C i .5 hydroxyalkyl,
C2.4 alkoxyalkyl, C3. cycloalkyl optionally substituted by C\ .4 alkyl or halo, C\ .4 alkoxy, heterocyclyl, heterocyclylalkyl, heteroarylalkyl, alkylamino, alkylaminoalkyl, cyano and halogen.
When Z is heteroaryl, suitable heteroaryl groups are oxadiazole, pyrimidine, pyridazine, thiazole, tetrazole, benzothiazole and thiadiazole, e.g., oxadiazole and
pyrimidine.
In some embodiments Z may suitably comprise l ,2,4-oxadiazol-3-yl, 1 ,2,4- oxadiazol-5-yl or pyrimidin-2-yl, which may be substituted by any of the aforementioned substituents.
Typically, said l ,2,4-oxadiazol-3-yl or l ,2,4-oxadiazol-5-yl may be substituted by C\ .4 alkyl, such as propyl (e.g., 3-isopropyl or 5-isopropyl), C \ .4 haloalkyl,
Cl-5 hydroxyalkyl (e.g. 1 -hydroxyethyl), C2-4 alkoxyalkyl or heterocyclyl.
Suitably said C i .5 hydroxyalkyl group may be C i .3 hydroxyalkyl, e.g. hydroxyethyl.
Pyrimidin-2-yl may be unsubstituted or substituted with one or more halo groups, e.g. 5-chloropyrimidin-2-yl.
In a further alternative, Z may suitably be -CH2-phenyl, wherein the phenyl is optionally substituted by one or two groups independently selected from C i .4 alkyl, C i .4 haloalkyl and halo. In some embodiments R1 may suitably be H or Ci _2alkyl, e.g., methyl. Generally, compounds in which R1 is H may be preferred.
R^ may suitably be optionally substituted phenyl, pyridyl, N-pyrazolyl or N- pyridonyl,
e.g., 2-pyridyl.
In some embodiments, R^ may suitably be phenyl substituted by one, two or three halo groups; the halo groups are suitably fluoro.
Alternatively, R^ may be pyridyl, N-pyrazolyl or N-pyridonyl substituted by one, two or three halo, methyl or methoxy groups, typically one or two methyl groups.
When W is a 5 membered heteroaryl ring, such as oxadiazolyl, R^ may suitably be phenyl optionally substituted by one or more halo, methyl or halomethyl groups.
In som mbodiments, when Y is W-Y^, R^ may be selected from:
Figure imgf000010_0001
s phenyl optionally substituted by one or more halo, methyl, halomethyl or methoxy groups, or pyridyl, optionally substituted by one or more halo, C\ _2 alkyl or halomethyl groups, wherein the lactam, phenyl and pyridyl groups are the same as they are above.
R^ is suitably H or C\ _2alkyl, typically methyl. When Z is -C(0)OR4, R^ may be
C\ _2alkyl and R^ may be phenyl, optionally substituted by one or more halo, methyl or halomethyl groups. When Z is -CH2-phenyl, R^ may be phenyl optionally substituted by one or more halo, methyl or halomethyl groups.
The molecular weight of the compounds of the invention is suitably less than about 800, typically less than about 600. When Z is heteroaryl, particularly oxadiazolyl, the compounds of the invention may be metabolized in vivo by a ring-opening mechanism to form compounds of formula (Id):
Figure imgf000011_0001
d)
wherein A, R1 to R11, X, Y, m, n, p, q and r are as defined for any of formulae (I), (lb) or (Ic) above;
Z is -C(0)R12; and
R12 is -NHC(0)R13 or -NHC(NH)R13, in which R13 is selected from C 1.4 alkyl, Ci _4haloalkyl, C1.5 hydroxyalkyl, Ci _4alkoxy, C2_4alkoxyalkyl, heterocyclyl,
heterocyclylC 1.4 alkyl, heteroarylCi _4alkyl, C3_6cycloalkyl and
~(Ci .3 alkyl)-(C3_ cycloalkyl), wherein the cycloalkyl and alkyl groups are each optionally substituted by one or two groups independently selected from C\ .4 alkyl, hydroxy or halo.
Said compounds of formula (Id) may have the stereochemistry of formula (la).
It has been found that these metabolites may have some GPR119 agonist activity and accordingly they are included in the present invention, together with their pharmaceutically acceptable salts.
In some embodiments, R^3 may be C\ .4 alkyl, for instance propyl or isopropyl.
Suitably, Y1 may be CR7H, where R7 is Ci _2 alkyl as defined above.
While suitable groups for each variable have generally been listed above separately for each variable, the compounds of the present invention include those in which several or each variable in formula (I) is selected from the groups mentioned particularly for each variable. Therefore, this invention is intended to include all combinations of listed groups, especially those indicated to be suitable or typical.
The invention also comprehends isotopically-labeled compounds, which are identical to those recited in formulae (I), (lb), (Ic) and (Id) and following, but for the fact that one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number most commonly found in nature. Examples of isotopes that can be incorporated into compounds of the invention include isotopes of hydrogen, carbon, nitrogen, fluorine, such as ^C, and l ^F.
Compounds of the present invention and salts of said compounds that contain the aforementioned isotopes and/or other isotopes of other atoms are within the scope of the present invention. Isotopically-labeled compounds of the present invention, for example those into which radioactive isotopes such as ¾, are incorporated, are useful in drug and/or substrate tissue distribution assays. Tritiated, i.e., ¾, and carbon-14, i.e., l^C, isotopes are particularly preferred for their ease of preparation and detectability. 1 lC and l ^F isotopes are particularly useful in PET (positron emission tomography). PET is useful in brain imaging. Further, substitution with heavier isotopes such as deuterium, i.e., ¾, can afford certain therapeutic advantages resulting from greater metabolic stability, for example increased in vivo half-life or reduced dosage requirements and, hence, may be preferred in some circumstances, isotopically labeled compounds of formula (I), (lb), (Ic) and (Id) and following of this invention can generally be prepared by carrying out the procedures disclosed in the Schemes and/or in the Examples below, by substituting a readily available isotopically labeled reagent for a non-isotopically labeled reagent. In one embodiment, the compounds of formula (I), (lb), (Ic) and (Id) or salts thereof are not isotopically labelled.
As used herein, unless stated otherwise, "alkyl" means carbon chains which may be linear or branched. Examples of alkyl groups include ethyl, propyl, isopropyl, butyl, sec- and tert-butyl. Such alkyl groups may in some embodiments be substituted with one or more halo groups, particularly fluoro. Generally a CF3 group may be replaced by SF5 without departing from the present invention.
The term "heteroaryl" rings means 5- or 6-membered N-containing heteroaryl rings optionally containing one or more, e.g. 1 , 2 or 3, additional heteroatoms selected from N, O and S, or fused bicyclic systems optionally containing one or more, e.g., 1 , 2, 3, 4 or 5, heteroatoms selected from N, O and S. Examples of such heteroaryl rings are pyrrolyl, pyrazolyl, imidazolyl, oxazolyl, isoxazolyl, thiazolyl, isothiazolyl, triazolyl, oxadiazolyl, thiadiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl C4. cycloalkylalkyl wherein the cycloalkylalkyl is optionally substituted by C\ .4 alkyl, triazinyl, tetrazolyl and
benzothiazolyl.
Compounds described herein may contain one or more asymmetric centers and may thus give rise to diastereomers and optical isomers. The present invention includes all such possible diastereomers as well as their racemic mixtures, their substantially pure resolved enantiomers, all possible geometric isomers, and pharmaceutically acceptable salts thereof. The present invention includes all stereoisomers of the compounds of the invention and pharmaceutically acceptable salts thereof. Further, mixtures of stereoisomers as well as isolated specific stereoisomers are also included. During the course of the synthetic procedures used to prepare such compounds, or in using racemization or epimerization procedures known to those skilled in the art, the products of such procedures can be a mixture of stereoisomers.
When a tautomer of the compound of the invention exists, the present invention includes any possible tautomers and pharmaceutically acceptable salts thereof, and mixtures thereof, except where specifically drawn or stated otherwise.
When the compound of the invention and pharmaceutically acceptable salts thereof exist in the form of solvates or polymorphic forms, the present invention includes any possible solvates and polymorphic forms. A type of a solvent that forms the solvate is not particularly limited so long as the solvent is pharmacologically acceptable. For example, water, ethanol, propanol, acetone or the like can be used.
The term "pharmaceutically acceptable salts" refers to salts prepared from
pharmaceutically acceptable non-toxic bases or acids. When the compound of the present invention is acidic, its corresponding salt can be conveniently prepared from
pharmaceutically acceptable non-toxic bases, including inorganic bases and organic bases. Salts derived from such inorganic bases include aluminum, ammonium, calcium, copper (ic and ous), ferric, ferrous, lithium, magnesium, potassium, sodium, zinc and the like salts. Particularly preferred are the ammonium, calcium, magnesium, potassium and sodium salts. Salts derived from pharmaceutically acceptable organic non-toxic bases include salts of primary, secondary, and tertiary amines, as well as cyclic amines and substituted amines such as naturally occurring and synthesized substituted amines. Other pharmaceutically acceptable organic non-toxic bases from which salts can be formed include arginine, betaine, caffeine, choline, N',N'-dibenzylethylenediamine, diethylamine, 2-diethylaminoethanol, 2- dimethylaminoethanol, ethanolamine, ethylenediamine, N-ethylmorpholine, N- ethylpiperidine, glucamine, glucosamine, histidine, hydrabamine, isopropylamine, lysine, methylglucamine, morpholine, piperazine, piperidine, polyamine resins, procaine, purines, theobromine, triethyl amine, trimethylamine, tripropylamine, tromethamine and the like.
When the compound of the invention is basic, its corresponding salt can be conveniently prepared from pharmaceutically acceptable non-toxic acids, including inorganic and organic acids. Such acids include, for example, acetic, benzenesulfonic, benzoic, camphorsulfonic, citric, ethanesulfonic, fumaric, gluconic, glutamic, hydrobromic, hydrochloric, isethionic, lactic, maleic, malic, mandelic, methanesulfonic, mucic, nitric, pamoic, pantothenic, phosphoric, succinic, sulfuric, tartaric, p-toluenesulfonic, trifluoroacetic acid and the like.
Since the compounds of the invention are intended for pharmaceutical use they are preferably provided in substantially pure form, for example at least 60% pure, more suitably at least 75% pure, especially at least 98%> pure (% are on a weight for weight basis).
The compounds of formula (I) can be prepared as described below, wherein R1, R^, R3, R4, R5, R6, R7, R8, R9, R10, R1 1, A, X, Y, Z, m, n, p, q and r are as defined for formula (I). PG is a protecting group, LG is a leaving group, Hal is halogen.
Compounds of formula (I) can be prepared as outlined in Scheme 1. Compounds of formula (IV) can be prepared by SNAT displacement of suitable haloaromatic compounds of formula (II) with amines of formula (III) under standard conditions, for example, DBU and DMSO at 80 - 100°C. Alternatively, compounds of formula (IV) can be prepared by reaction of suitable haloaromatic compounds of formula (II) with amines of formula (III) under Buchwald-Hartwig conditions, such as, Pd2(dba)3 and XANTPHOS or
triisobutylphosphatrane in a suitable solvent, such as toluene at 120°C in a microwave reactor. Removal of the protecting group PG from the amine functionality to yield compound (I), can be achieved using standard conditions well known to those skilled in the art.
Scheme 1
Figure imgf000014_0001
I
Compounds of formula (II), where X is O, can be prepared as outlined in Scheme 2. Alcohols of formula (V) can be treated with hydroxyaryl compounds of formula (VI) under standard Mitsonobu conditions, for example, using diisopropylazodicarboxylate and triphenylphosphine in a suitable solvent such as toluene. Alternatively, compounds of formula (II) where X is O can be prepared from alcohols of formula (V) via formation of a suitable leaving group. Suitable leaving groups, such as mesylates of formula (VII), can be prepared using standard conditions, such as, methanesulfonyl chloride and triethylamine in DCM. Compounds of formula (II) can be prepared from mesylates of formula (VII) and hydroxyaryls of formula (VI) under standard conditions, for example, using a base such as CsF or K2C03 in a suitable solvent such as DMA or DMF at 60 - 80°C.
Figure imgf000015_0001
Compounds of formula (IV), where X is NR6, and R6 is hydrogen, can be prepared as outlined in Scheme 3. Carbonyl compounds of formula (VIII) can be prepared from alcohols of formula (V) using standard oxidizing conditions, such as DMSO and oxalyl chloride with a base such as triethylamine, or Dess-Martin Periodinane in a solvent such as DCM.
Compounds of formula (IV) can be prepared from carbonyl compounds of formula (VIII) and amines of formula (IX) by reductive amination under standard conditions, using, for example, a reducing agent such as NaBH(OAc)3 and a catalyst such as AcOH in a suitable solvent such as DCM. Scheme 3
Figure imgf000016_0001
Further reaction of compounds of formula (IV) with readily available aldehydes under standard conditions, as outlined above, can be used to prepare compounds of formula
(IV) where R6 is an alkyl group.
Compounds of formula (IX) can be prepared as outlined in Scheme 4. Compounds of formula (XI) can be prepared by SNAT displacement of suitable haloaromatic compounds of formula (X) with amines of formula (III) under the standard conditions outlined above. Compounds of formula (IX) can be prepared from compounds of formula (XI) by reduction under standard conditions using a catalyst such as 10% palladium on carbon under an atmosphere of hydrogen in a suitable solvent such as methanol or ethanol.
Scheme 4
Figure imgf000016_0002
XI
Compounds of formula (II), where X is CR^H and γΐ is O, can be prepared as outlined in Scheme 5. Alkylating agents such as halides of formula (XIII), which are either readily available or can be synthesised by known methods, can be reacted with Alcohols of formula (XII) under standard conditions using, for example, a base such as Sodium hydride or tBuOK in a suitable solvent such as THF or DMF. Scheme 5
Figure imgf000017_0001
XII XIII
Compounds of formula (IV), where X is CR^H and γΐ is NR^, and where R^ is hydrogen, can be prepared as outlined in Scheme 6. Compounds of formula (XIV) can be prepared from alcohols of formula (XII) under standard Mitsonobu conditions using, for example, diisopropylazodicarboxylate and triphenylphosphine in a suitable solvent such as toluene. Compounds of formula (XIV) can be converted to the amine by reaction with hydrazine hydrate in a solvent such as EtOH to afford amines of formula (XV). Compounds of formula (IV) can be prepared by reacting amines of formula (XV) with carbonyl compounds of formula (XVI), under standard reductive amination conditions as outlined above.
Scheme 6
Figure imgf000017_0002
XII XIV
Figure imgf000017_0003
IV
Further reaction of compounds of formula (IV) with readily available aldehydes under standard conditions, using a reducing agent such as NaBH(OAc)3 and catalyst such as AcOH in a suitable solvent such as DCM, can be used to prepare compounds of formula (IV) where R^ is an alkyl group.
Carbonyl compounds of formula (XVI) can be prepared as outlined in Scheme 7. Compounds of formula (XVIII) can be prepared by SN^r displacement of suitable, readily available haloaromatic compounds of formula (XVII) by amines of formula (III) under the standard conditions outlined above. Compounds of formula (XVIII) can be reduced to alcohols of formula (XIX) using, for example, a standard reducing agent such as DIBAL-H in a solvent such as THF. Carbonyl compounds of formula (XVI) can be prepared from alcohols of formula (XIX) by oxidation under standard conditions using a reagent such as Dess-Martin Periodinane in a solvent such as DCM. Alternatively, carbonyl compounds of formula (XVI) can be prepared by SN^r displacement of suitable readily available haloaromatic compounds of formula (XX) by amines of formula (III) under the standard conditions outlined above.
Scheme 7
Figure imgf000018_0001
XVII XVIII
Figure imgf000018_0002
Figure imgf000018_0003
xx
Examples and syntheses of compounds of formula (III) have been described elsewhere: Benbow et.al, WO2007148185; Brackes et.al, Bioorg. Med. Chem. Lett., 2007, 17 (7), 2005-2012; Pei et.al, J. Med. Chem., 2007, 50 (8), 1983-1987; Cox et.al, Bioorg. Med. Chem. Lett., 2007, 17 (16), 4579-4583; Wright et.al, Bioorg. Med. Chem. Lett., 2007, 17 (20), 5638-5642. The syntheses of building blocks of formulae (V) and (XIII) have been described elsewhere: Fang et. al, WO2008070692; Walmsley et. al, WO2008038011; Chen et. al, WO2008083238; Wilson et. al, WO2009123992; Loso et. al, WO2008030266. Other compounds of formula (I) may be prepared by methods analogous to those described above or by methods known per se. Further details for the preparation of the compounds of formula (I) are found in the examples.
The compounds of formula (I) may be prepared singly or as compound libraries comprising at least 2, for example 5 to 1,000, compounds and more preferably 10 to 100 compounds of formula (I). Compound libraries may be prepared by a combinatorial "split and mix" approach or by multiple parallel syntheses using either solution or solid phase chemistry, using procedures known to those skilled in the art.
Any novel intermediates as defined in the Schemes above or in the Examples, are also included within the scope of the invention. Therefore according to a further aspect of the invention there is provided a compound of any one of formulae (II), (IV), (IX) and (XVI) as defined above. The preferred groups for variables recited above in relation to the compounds of formula (I) also apply to the intermediate compounds.
As indicated above the compounds of the invention are useful as GPR119 agonists, e.g. for the treatment and/or prophylaxis of diabetes. For such use the compounds of the invention will generally be administered in the form of a pharmaceutical composition.
The compounds of the invention may also be useful as dual GPR119 agonists/DPP- IV inhibitors, e.g. for the treatment and/or prophylaxis of diabetes. For such use the compounds of the invention will generally be administered in the form of a pharmaceutical composition.
The invention also provides a compound of the invention, or a pharmaceutically acceptable salt thereof, for use as a pharmaceutical.
The invention also provides a pharmaceutical composition comprising a compound of the invention, in combination with a pharmaceutically acceptable carrier.
Preferably the composition is comprised of a pharmaceutically acceptable carrier and a non-toxic therapeutically effective amount of a compound of the invention, or a
pharmaceutically acceptable salt thereof.
Moreover, the invention also provides a pharmaceutical composition for the treatment of disease by modulating GPR119 and optionally DPP-IV, resulting in the prophylactic or therapeutic treatment of diabetes, comprising a pharmaceutically acceptable carrier and a non-toxic therapeutically effective amount of compound of the invention, or a pharmaceutically acceptable salt thereof.
The pharmaceutical compositions may optionally comprise other therapeutic ingredients or adjuvants. The compositions include compositions suitable for oral, rectal, topical, and parenteral (including subcutaneous, intramuscular, and intravenous)
administration, although the most suitable route in any given case will depend on the particular host, and nature and severity of the conditions for which the active ingredient is being administered. The pharmaceutical compositions may be conveniently presented in unit dosage form and prepared by any of the methods well known in the art of pharmacy.
In practice, the compounds of the invention, or pharmaceutically acceptable salts thereof, can be combined as the active ingredient in intimate admixture with a
pharmaceutical carrier according to conventional pharmaceutical compounding techniques. The carrier may take a wide variety of forms depending on the form of preparation desired for administration, e.g. oral or parenteral (including intravenous).
Thus, the pharmaceutical compositions can be presented as discrete units suitable for oral administration such as capsules, cachets or tablets each containing a predetermined amount of the active ingredient. Further, the compositions can be presented as a powder, as granules, as a solution, as a suspension in an aqueous liquid, as a non-aqueous liquid, as an oil -in- water emulsion, or as a water-in-oil liquid emulsion. In addition to the common dosage forms set out above, the compound of the invention, or a pharmaceutically acceptable salt thereof, may also be administered by controlled release means and/or delivery devices. The compositions may be prepared by any of the methods of pharmacy. In general, such methods include a step of bringing into association the active ingredient with the carrier that constitutes one or more necessary ingredients. In general, the compositions are prepared by uniformly and intimately admixing the active ingredient with liquid carriers or finely divided solid carriers or both. The product can then be conveniently shaped into the desired presentation.
The compounds of the invention, or pharmaceutically acceptable salts thereof, can also be included in pharmaceutical compositions in combination with one or more other therapeutically active compounds.
The pharmaceutical carrier employed can be, for example, a solid, liquid, or gas. Examples of solid carriers include lactose, terra alba, sucrose, talc, gelatin, agar, pectin, acacia, magnesium stearate, and stearic acid. Examples of liquid carriers are sugar syrup, peanut oil, olive oil, and water. Examples of gaseous carriers include carbon dioxide and nitrogen.
In preparing the compositions for oral dosage form, any convenient pharmaceutical media may be employed. For example, water, glycols, oils, alcohols, flavoring agents, preservatives, coloring agents, and the like may be used to form oral liquid preparations such as suspensions, elixirs and solutions; while carriers such as starches, sugars, microcrystalline cellulose, diluents, granulating agents, lubricants, binders, disintegrating agents, and the like may be used to form oral solid preparations such as powders, capsules and tablets. Because of their ease of administration, tablets and capsules are the preferred oral dosage units whereby solid pharmaceutical carriers are employed. Optionally, tablets may be coated by standard aqueous or nonaqueous techniques.
A tablet containing the composition of this invention may be prepared by
compression or molding, optionally with one or more accessory ingredients or adjuvants. Compressed tablets may be prepared by compressing, in a suitable machine, the active ingredient in a free-flowing form such as powder or granules, optionally mixed with a binder, lubricant, inert diluent, surface active or dispersing agent. Molded tablets may be made by molding in a suitable machine, a mixture of the powdered compound moistened with an inert liquid diluent. Each tablet preferably contains from about 0.05mg to about 5g of the active ingredient and each cachet or capsule preferably containing from about 0.05mg to about 5 g of the active ingredient.
For example, a formulation intended for the oral administration to humans may contain from about 0.5mg to about 5g of active agent, compounded with an appropriate and convenient amount of carrier material which may vary from about 5 to about 95 percent of the total composition. Unit dosage forms will generally contain between from about lmg to about 2g of the active ingredient, typically 25mg, 50mg, lOOmg, 200mg, 300mg, 400mg, 500mg, 600mg, 800mg, or lOOOmg.
Pharmaceutical compositions of the present invention suitable for parenteral administration may be prepared as solutions or suspensions of the active compounds in water. A suitable surfactant can be included such as, for example, hydroxypropylcellulose. Dispersions can also be prepared in glycerol, liquid polyethylene glycols, and mixtures thereof in oils. Further, a preservative can be included to prevent the detrimental growth of microorganisms .
Pharmaceutical compositions of the present invention suitable for injectable use include sterile aqueous solutions or dispersions. Furthermore, the compositions can be in the form of sterile powders for the extemporaneous preparation of such sterile injectable solutions or dispersions. In all cases, the final injectable form must be sterile and must be effectively fluid for easy syringability. The pharmaceutical compositions must be stable under the conditions of manufacture and storage; thus, preferably should be preserved against the contaminating action of microorganisms such as bacteria and fungi. The carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (e.g. glycerol, propylene glycol and liquid polyethylene glycol), vegetable oils, and suitable mixtures thereof.
Pharmaceutical compositions of the present invention can be in a form suitable for topical use such as, for example, an aerosol, cream, ointment, lotion, dusting powder, or the like. Further, the compositions can be in a form suitable for use in transdermal devices. These formulations may be prepared, using a compound of the invention, or a
pharmaceutically acceptable salt thereof, via conventional processing methods. As an example, a cream or ointment is prepared by admixing hydrophilic material and water, together with about 5wt% to about 10wt% of the compound, to produce a cream or ointment having a desired consistency.
Pharmaceutical compositions of this invention can be in a form suitable for rectal administration wherein the carrier is a solid. It is preferable that the mixture forms unit dose suppositories. Suitable carriers include cocoa butter and other materials commonly used in the art. The suppositories may be conveniently formed by first admixing the composition with the softened or melted carrier(s) followed by chilling and shaping in molds.
In addition to the aforementioned carrier ingredients, the pharmaceutical formulations described above may include, as appropriate, one or more additional carrier ingredients such as diluents, buffers, flavoring agents, binders, surface-active agents, thickeners, lubricants, preservatives (including anti-oxidants) and the like. Furthermore, other adjuvants can be included to render the formulation isotonic with the blood of the intended recipient.
Compositions containing a compound of the invention, or pharmaceutically acceptable salts thereof, may also be prepared in powder or liquid concentrate form.
Generally, dosage levels on the order of O.Olmg/kg to about 150mg/kg of body weight per day are useful in the treatment of the above -indicated conditions, or alternatively about 0.5mg to about 7g per patient per day. For example, obesity may be effectively treated by the administration of from about 0.01 to 50mg of the compound per kilogram of body weight per day, or alternatively about 0.5mg to about 3.5g per patient per day.
It is understood, however, that the specific dose level for any particular patient will depend upon a variety of factors including the age, body weight, general health, sex, diet, time of administration, route of administration, rate of excretion, drug combination and the severity of the particular disease undergoing therapy.
The compounds of the invention may be used in the treatment of diseases or conditions in which GPR119 and optionally DPP-IV play a role. Thus the invention also provides a method for the treatment of a disease or condition in which GPR119 and optionally DPP-IV play a role comprising a step of administering to a subject in need thereof an effective amount of a compound of the invention, or a
pharmaceutically acceptable salt thereof. Such diseases or conditions diabetes, obesity, impaired glucose tolerance, insulin resistance and diabetic complications such as neuropathy, nephropathy, retinopathy, cataracts, cardiovascular complications and dyslipidaemia). And the treatment of patients who have an abnormal sensitivity to ingested fats leading to functional dyspepsia. The compounds of the invention may also be used for treating metabolic diseases such as metabolic syndrome (syndrome X), impaired glucose tolerance, hyperlipidemia, hypertriglyceridemia, hypercholesterolemia, low HDL levels and
hypertension.
The invention also provides a method for the treatment of type II diabetes, comprising a step of administering to a patient in need thereof an effective amount of a compound of the invention, or a pharmaceutically acceptable salt thereof.
The invention also provides a method for the treatment of obesity, metabolic syndrome (syndrome X), impaired glucose tolerance, hyperlipidemia, hypertriglyceridemia, hypercholesterolemia, low HDL levels or hypertension comprising a step of administering to a patient in need thereof an effective amount of a compound of the invention, or a
pharmaceutically acceptable salt thereof.
The invention also provides a compound of the invention, or a pharmaceutically acceptable salt thereof, for use in the treatment of a condition as defined above.
The invention also provides the use of a compound of the invention, or a
pharmaceutically acceptable salt thereof, in the manufacture of a medicament for the treatment of a condition as defined above.
In the methods of the invention the term "treatment" includes both therapeutic and prophylactic treatment.
The compounds of the invention may exhibit advantageous properties compared to known compounds or combination therapies for the treatment of diabetes.
The compounds of the invention, or pharmaceutically acceptable salts thereof, may be administered alone or in combination with one or more other therapeutically active compounds. The other therapeutically active compounds may be for the treatment of the same disease or condition as the compounds of the invention or a different disease or condition. The therapeutically active compounds may be administered simultaneously, sequentially or separately. The compounds of the invention may be administered with other active compounds for the treatment of obesity and/or diabetes, for example insulin and insulin analogs, gastric lipase inhibitors, pancreatic lipase inhibitors, sulfonyl ureas and analogs, biguanides, a2 agonists, glitazones, PPAR-γ agonists, mixed PPAR-α/γ agonists, RXR agonists, fatty acid oxidation inhibitors, a-glucosidase inhibitors, β-agonists, phosphodiesterase inhibitors, lipid lowering agents, glycogen phosphorylase inhibitors, antiobesity agents e.g. pancreatic lipase inhibitors, MCH-1 antagonists and CB-1 antagonists (or inverse agonists), amylin antagonists, lipoxygenase inhibitors, somostatin analogs, glucokinase activators, glucagon antagonists, insulin signalling agonists, PTP1B inhibitors, gluconeogenesis inhibitors, antilypolitic agents, GSK inhibitors, galanin receptor agonists, anorectic agents, CCK receptor agonists, leptin, serotonergic/dopaminergic antiobesity drugs, reuptake inhibitors e.g. sibutramine, CRF antagonists, CRF binding proteins, thyromimetic compounds, aldose reductase inhibitors, glucocorticoid receptor antagonists, NHE-1 inhibitors or sorbitol dehydrogenase inhibitors.
Combination therapy comprising the administration of a compound of the invention, or a pharmaceutically acceptable salt thereof, and at least one other agent represents a further aspect of the invention.
The present invention also provides a method for the treatment of diabetes in a mammal, such as a human, which method comprises administering an effective amount of a compound of the invention, or a pharmaceutically acceptable salt thereof, and another agent, to a mammal in need thereof.
The invention also provides the use of a compound of the invention, or a
pharmaceutically acceptable salt thereof, and another agent for the treatment of diabetes.
The invention also provides the use of a compound of the invention, or a
pharmaceutically acceptable salt thereof, in the manufacture of a medicament for use in combination with another agent, for the treatment of diabetes.
The compound of the invention, or a pharmaceutically acceptable salt thereof, and the other agent(s) may be co-administered or administered sequentially or separately.
Co-administration includes administration of a formulation which includes both the compound of the invention, or a pharmaceutically acceptable salt thereof, and the other agent(s), or the simultaneous or separate administration of different formulations of each agent. Where the pharmacological profiles of the compound of the invention, or a pharmaceutically acceptable salt thereof, and the other agent(s) allow it, coadministration of the two agents may be preferred.
The invention also provides the use of a compound of the invention, or a
pharmaceutically acceptable salt thereof, and another agent in the manufacture of a medicament for the treatment of diabetes.
The invention also provides a pharmaceutical composition comprising a compound of the invention, or a pharmaceutically acceptable salt thereof, and another antiobesity agent, and a pharmaceutically acceptable carrier. The invention also encompasses the use of such compositions in the methods described above.
All publications, including, but not limited to, patents and patent application cited in this specification, are herein incorporated by reference as if each individual publication were specifically and individually indicated to be incorporated by reference herein as fully set forth.
The invention will now be described by reference to the following examples which are for illustrative purposes and are not to be construed as a limitation of the scope of the present invention.
EXAMPLES
Materials and methods
Column chromatography was carried out on Si02 (40-63 mesh) unless specified otherwise. LCMS data were obtained as follows: Atlantis 3μ C18 column (3.0 x 20.0mm, flow rate = 0.85mL/min) eluting with a H20-MeCN solution containing 0.1% HC02H over 6 min with UV detection at 220 nm. Gradient information: 0.0-0.3 min 100% H20; 0.3-4.25 min: Ramp up to 10% H2O-90% MeCN; 4.25-4.4 min: Ramp up to 100% MeCN; 4.4-4.9 min: Hold at 100% MeCN; 4.9-6.0 min: Return to 100% H20. The mass spectra were obtained using an electrospray ionisation source in either the positive (ES+) or negative (ES~) ion modes.
LCMS -method 2 data were obtained as follows: Xbridge C18 column (2.1 x 50mm, 2.5μΜ, flow rate 0.8mL/min) eluting with an MeCN-lOmM NH4HCO3 solution over 1.5 min with UV detection at 215 - 350nm. Gradient information: 0-0.8 min: 98% MeCN 2%
NH4HCO3 to 98% NH4HCO3 2% MeCN; 0.8-1.2min: hold at 98% NH4HCO3 2% MeCN. The mass spectra were obtained using an electrospray ionisation source in the positive (ES+) mode. LCMS-method 3 data were obtained as follows: Xbridge C18 column (2.1 x 5.0mm, 2.55μΜ, flow rate 0.8mL/min) eluting with an MeCN-lOmM NH4HCO3 solution over 5 min with UV detection at 215 - 350nm. Gradient information: 0-4 min: 98% MeCN 2%
NH4HCO3 to 98% NH4HCO3 2% MeCN; 4-4.6min: hold at 98% NH4HCO3 2% MeCN. The mass spectra were obtained using an electrospray ionisation source in the positive (ES+) mode.
LCMS-method 4 data were obtained as follows: Xbridge CI 8 column (3.0 x 150mm,
5μΜ, flow rate l .OmL/min) eluting with an MeCN-lOmM NH4HCO3 solution over 5 min with UV detection at 215 - 350nm. Gradient information: 0-0.1 min: hold at 5% MeCN 95% NH4HCO3; 0.1-3.0 min: 5% MeCN 95%NH4HC03 to 5% NH4HCO3 95% MeCN; 3.0-
3.9min: hold at 5% NH4HCO3 95% MeCN. The mass spectra were obtained using an electrospray ionisation source in the positive (ES+) mode.
LCMS-method 5 data were obtained as follows: Xbridge C18 column (3.0 x 150mm,
5μΜ, flow rate 0.5mL/min) eluting with an MeCN-lOmM NH4HCO3 solution over 25 min with UV detection at 215 - 350nm. Gradient information: 0-15 min: 5% MeCN
95%NH4HC03 to 5% NH4HCO3 95% MeCN; 15-25min: hold at 5% NH4HCO3 95% MeCN.
The mass spectra were obtained using an electrospray ionisation source in the positive (ES+) mode.
LCMS-method 6 data were obtained as follows: Phenomenex Kinetex CI 8 column (3.0x30mm, 2.6μΜ, flow rate l .OmL/min) eluting with a H20-MeCN solution containing 0.1% HC02H over 2 min with UV detection at 220 nm. Gradient information: 0.0-0.1 min 2% MeCN 98% H20 to 5% MeCN 95% H20; 0.1-1.50 min: Ramp up to 100% MeCN; 1.5- 1.75min: Hold at 100% MeCN; 1.75-1.8min: 100% MeCN to 2% MeCN 98% H20; 1.8-2.0 min: Hold at 2% MeCN 98% H20. The mass spectra were obtained using an electrospray ionisation source in either the positive (ES+) or negative (ES~) ion modes.
LCMS-method 7 data were obtained as follows: Waters Atlantis CI 8 column (3.0 x 20mm, 3μΜ, flow rate l .OmL/min) eluting with H20-MeCN solution containing 0.1% HC02H over 6 min with UV detection at 220 nm. Gradient information: 0.00-0.30 min: 100% H20; 0.30-4.25 min: 100% H20 to 90% MeCN 10% H20; 4.25-4.40 min: 90% H20 to 10% MeCN to 100% MeCN; 4.40-4.90 min: hold at 100% MeCN; 4.90-5.00 min: 100% MeCN to 100% H20; 5.00-6.00 min: hold at 100% H20 for re-equilibration. The mass spectra were obtained using an electrospray ionisation source in the positive (ES+) mode.
LCMS-method 8 data were obtained as follows: Waters Xbridge C18 column (4.6 x 50mm, 3.5μΜ, flow rate 1.5 mL/min) eluting with H20-MeCN solution containing 0.2% NH3OH over 5.5 min with UV detection at 220 nm. Gradient information: 0.00-0.30 min: 95% H20, 5% MeCN; 0.30-3.90 min: 100% H20 to 100% MeCN; 3.90-4.90 min: hold at 100% MeCN; 4.90-5.00 min: 100% MeCN to 5% MeCN 95% H20; 5.00-5.50 min: hold at 95% H20, 5%) MeCN for re-equilibration. The mass spectra were obtained using an electrospray ionisation source in the positive (ES+) mode.
Unless otherwise stated LCMS-method 1 was employed for analysis.
Preparative HPLC purification was carried out using either a standard or basic method.
Standard method: Gemini-NX C18 column (21.2 x 100mm, 5μΜ, flow rate 20mL/min) eluting with a H20-MeCN solution containing 0.1% HC02H using a 10 minute gradient with UV detection at 220 nm.
Basic method: XBridge Prep C18 column (19 x 100mm, 5μΜ, flow rate 20mL/min) eluting with a H20-MeCN solution containing 0.2% NH4OH using a 10 minute gradient with UV detection at 220 nm. Unless otherwise stated, the standard method was employed for purification.
MDP (Mass-directed purification) was carried out using either an acidic or basic method. Acidic method: XBridge Prep C18 column (19 x 50mm, 5μΜ, flow rate 20mL/min) eluting with a H20-MeCN solution containing 0.1% HC02H using an 8 minute gradient with
UV detection at 220 nm and additional mass ion detection.
Basic method: XBridge Prep C18 column (19 x 50mm, 5μΜ, flow rate 20mL/min) eluting with a H20-MeCN solution containing 0.2% NH4OH using an 8 minute gradient with UV detection at 220 nm and additional mass ion detection. Both the acidic and basic methods were employed for purification.
Chiral-HPLC was performed on a Daicel chiralpak IA 250 x 20 mm, 5 μΜ column. Abbreviations and acronyms: AcOH: Acetic acid; ADDP: Azodicarboxylic
dipiperidide; BA: n-butylamine; BOP: (benzotriazol-1- yloxy)tris(dimethylamino)phosphonium hexafluorophosphate; n-BuLi: n-Butyl Lithium; lBuOK: tertiary Butanol; lBuOK: Potassium tertiary butoxide; C: Carbon; CsF: Cesium fluoride; DAST: Diethylaminosulfur trifluoride; DBU: l ,8-Diazabicyclo[5.4.0]undec-7-ene;
DCM: Dichloromethane; DCE: 1 ,2-dichloroethane; DEA: Diethylamine; DEAD:
Diethylazodicarboxylate; DIAD: Diisopropylazodicarboxylate; DMA: Dimethylacetamide;
DME: 1 ,2-Dimethoxyethane; DMF: Dimethylformamide; DIPEA: Diisopropylethylamine;
DMAP: Dimethylpyridin-4-ylamine; DMSO: Dimethylsulfoxide; EDCI: (3-
Dimethylaminopropyl)ethylcarbodiimide hydrochloride; Et20: Diethyl ether; EtOH: Ethanol;
EtOAc: Ethyl Acetate; h: hour(s); HBTU: 0-(benzotriazol-l-yl)N,N,N'N'- tetramethyluronium hexafluorophosphate; HC1: Hydrochloric acid; HC02H: Formic acid; H20: Water; HOAT: l-Hydroxy-7-azabenzotriazole; HOBt: 1 -Hydro xybenzotriazole monohydrate; HPLC: High performance liquid chromatography; H2S04: Sulfuric acid; IH: Isohexane; IMS: Industrial methylated spirit; IPA: Isopropyl alcohol; M: Molar; MDP:
Mass-directed purification; MeCN: Acetonitrile; MeOH: Methanol; MgS04: Magnesium sulphate; min: minute/s; MTBE: Methyl tert-butyl ether; NaHC03: Sodium hydrogen carbonate; NaOH: Sodium hydroxide; Na2S04: Sodium sulphate; n-BuLi: n-Butyl lithium; NH3: Ammonia; NH4HC03: Ammonium carbamate; NH4OH: Ammonium hydroxide; NMP: N-methyl-2-pyrrolidone; Pd: Palladium; PE-AX: Anion exchange resin; POH: Phosphonic acid resin; PPh3: Triphenylphosphine; PS: Polymer supported; RT: Retention time; r.t.: Room temperature; sat: Saturated; SCX: Strong Cation Exchange resin; Si02: Silica gel; STMAd: Succinic acid resin; TBAD: tert-butylazodicarboxylate; TBAI:
Tetrabutylammonium iodide; TBME: tert-Butyl methyl ether; THF: Tetrahydrofuran; TFA: Trifluoroacetic acid; TFAA: Trifluoroacetic anhydride; TsOH: /?-Toluenesulfonic acid monohydrate; wt: Weight
The syntheses of the following compounds have been described elsewhere: (1- Benzyl-5-fluoro-l,2,3,6-tetrahydro-pyridin-4-yl)-methanol: Nelson, T.D., et. al., WO
2006069287;
(3S,4S)-3,4-diazido-l-benzylpyrrolidine: Benbow et. al, WO2007148185; N-hydroxy-2- methoxyacetamidine: Allen, et. al., WO2004056823; 4-hydroxypiperidine-l-carbonitrile: Bertram, L., et. al., WO2007116229; (i?)-N-hydroxy-tetrahydro-furan-2-carboxamidine: Rikimaru, K., et. al., WO2010095663; (i?)-3-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin- 4-yl]butan-l-ol: Fyfe et. al, WO2008081204; 3-isopropyl-5-trichloromethyl- [l,2,4]oxadiazole: Smith, N., et. al., WO2009117421; methanesulfonic acid l-(3-isopropyl- [1 ,2,4]oxadiazol-5-yl)-piperidin-4-ylmethyl ester: Fang et al, WO2008070692; 4-((R)-l- methanesulfonyloxy-ethyl)-piperidine-l-carboxylic acid isopropyl ester: Fang et al., WO2008070692; (i?)-l-piperidin-4-yl-ethanol acetate: Fang, J. et al., WO2008070692;
(35',45)-3-tert-butoxycarbonylamino-4-hydroxy-pyrrolidine- 1 -carboxylic acid tert-butyl ester: Johnson, J. et al., WO2009153554.
All other compounds were available from commercial sources. Preparation 1: [(l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]methanol
A solution of 4-piperidinemethanol (3.45g, 30mmol) in DCM (25mL) was cooled to 0°C and sodium hydrogen carbonate (24.72g, 120mmol) was added. To the mixture was added a solution of cyanogen bromide (3.82g, 36mmol) in water (lOmL), dropwise over 15 min, and the mixture was stirred at 0°C for 2 h before being stirred at r.t. for 16 h. The organic phase was separated, and the aqueous phase extracted with DCM (4 x 50mL).
Organic fractions were combined and concentrated in vacuo to afford 4- hydroxymethylpiperidine-l-carbonitrile: RT = 1.71 min, m/z (ES ) = 141.1 [M+ H]+.
To a solution of the intermediate and N-hydroxyisobutyramidine (2.80g, 27.43mmol) in EtOH (30mL) was added a solution of zinc chloride (3.73g, 27.43mmol) in EtOH (20mL) over 15 min. The reaction was stirred at r.t. for 2 h and then 12M HCl (13.33mL) was added before heating the mixture to 50°C for 18 h. After cooling to r.t., the crude mixture was filtered and the filtrate concentrated in vacuo. The resulting residue was diluted with water (lOOmL), then solid NaHC03 was added to bring the pH to 7. The mixture was extracted with EtOAc (3 x 200mL), then organic fractions were combined, washed with brine (2 x 200mL) and dried (MgSC^). Removal of the solvent in vacuo afforded the title compound R- T = 2.57 min, m/z (ES+) = 226.2 [M+ H]+.
Preparation 2 : 2-Chloro-5- [ l-(3-isopropyl- [1 ,2,4] oxadiazol-5-yl)piperidin-4- ylmethoxy] pyrimidine
Figure imgf000029_0001
To a solution of [(l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]methanol (Preparation 1, 1.13g, 5.0mmol) and triethylamine (0.77mL, 5.5mmol) in DCM (30mL), cooled to 0°C, was added methanesulfonyl chloride (0.39mL, 5.0mmol), dropwise, before allowing the reaction to warm to r.t. for 30 min. The reaction mixture was partitioned between DCM (lOOmL) and 1M HCl (150mL), then the organic phase was separated and concentrated in vacuo to afford the intermediate product methanesulfonic acid l-(3- isopropyl[ 1 ,2,4]oxadiazol-5-yl)piperidin-4-ylmethyl ester.
To a solution of the intermediate in DMF (50mL) was added 2-chloropyrimidin-5-ol (0.78g, 6.0mmol) and potassium carbonate (1.38g, lO.Ommol), and the reaction was heated to 80°C for 16 h. The reaction solvent was concentrated in vacuo and the resulting residue was re-dissolved in EtOAc (300mL). The solution was washed with 1M NaOH solution (2 x 300mL), brine, then dried (MgSC^), and the solvent was removed in vacuo to afford the title compound: RT = 3.55 min, m/z (ES+) = 338.1 [M+ H]+.
Preparation 3: 2-Bromo-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy] pyridine
Figure imgf000030_0001
A solution of [(l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]methanol
(Preparation 1, 1.13g, 5.0mmol) and 6-bromopyridin-3-ol (0.87g, 5.0mmol) in toluene (lOOmL), under argon, was cooled to 0°C. ADDP (2.52g, lO.Ommol) was added, followed by portion- wise addition of tri-n-butyl phosphine (2.46mL, lO.Ommol). The resulting mixture was allowed to reach r.t., then stirred for 112 h before concentration of the reaction solvent in vacuo. The residue was re-dissolved in EtOAc, washed with 1M NaOH solution (2 x 200mL), then brine (2 x 150mL), and dried (MgSC^). Purification by column
chromatography (IH:EtOAc, 60:40) afforded the title compound: RT = 2.37 min; m/z (ES ) =
Figure imgf000030_0002
Preparation 4: 2-Bromo-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrazine
Figure imgf000030_0003
[(l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]methanol (Preparation 1) was reacted with 5-bromopyrazin-2-ol employing the procedure outlined in Preparation 2. Further purification by column chromatography (IH:EtOAc, 2:1) afforded the title compound: RT = 2.37 min; m/z (ES+) =382.1, 384.0 [M+ H]+.
Preparation 5: 3-(2,5-Difluorophenyl)-4-nitrobutyric acid methyl ester
Figure imgf000030_0004
To a solution of (2E)-3-(2,5-difluorophenyl)acrylic acid (21.10g, 114.7mmol) in a mixture of DCM and MeOH (DCM:MeOH, 4: 1, 250mL) was added a solution of trimethylsilyldiazomethane (2M in Et20, 57.34mL, 114.7mmol) over 15 min and the resulting mixture was stirred at r.t. until complete. AcOH was added, dropwise, until the reaction turned colourless, and the solvent was removed in vacuo. The residue was re- dissolved in MeCN (114mL), then nitromethane (7.45mL, 137.6mmol) was added. The mixture was cooled to 0°C before adding DBU (17.49mL, 117.0mmol), dropwise, over 30 min. The reaction was allowed to warm to r.t. and stirred for 16 h. Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 95:5, 90: 10) afforded the title compound: 1H NMR δΗ (400MHz, CDC13): 7.18 - 7.00 (m, 3H), 4.91 - 4.77 (m, 2H), 4.27 - 4.17 (m, 1H), 3.75 (s, 3H), 2.91 (m, 2H).
Preparation 6: (frans)-l-Benzyl-4-(2, -difluorophenyl)-5-nitropiperidin
Figure imgf000031_0001
A combination of 3-(2,5-difluorophenyl)-4-nitrobutyric acid methyl ester
(Preparation 5, 16.27g, 62.81mmol), paraformaldehyde (1.94g, 64.63mmol) and benzylamine (13.7mL, 125.62mmol) in EtOH was heated to 90°C in a sealed tube for 16 h. After complete reaction the mixture was partitioned between EtOAc (400mL) and 2M HCl (600mL). The organic fraction was separated, washed with brine, dried (MgSC^), and the solvent removed in vacuo. Purification by column chromatography (IH:EtOAc, 70:30) afforded the title compound: RT = 3.72 min mlz (ES+) = 347.1 [M+ H]+.
Preparation 7: (frans)-l-Benzyl-4-(2,5-difluorophenyl)-3-nitropiperidine hydrochloride
Figure imgf000031_0002
To a solution of (trans)- l-benzyl-4-(2,5-difluorophenyl)-5-nitropiperidin-2 -one
(Preparation 6, 10.44g, 30.17mmol) in THF (90mL), under argon, was added borane dimethylsulfide complex (2.0M in DCM, 45.3mL, 90.60mmol) and the reaction was heated to 70°C for 3 h. After cooling to r.t. the mixture was diluted with MeOH (20mL), then 1M HCl (30mL) was added. The mixture was stirred for 10 min before removal of the solvent in vacuo. Further portions of MeOH (20mL) and 1M HCl (20mL) were added and the reaction was stirred for 10 min. Removal of the solvent in vacuo afforded the title compound: RT = 3.30 min mlz (ES+) = 333.1 [M+ H]+.
Preparation 8: [(3R,4R)-l-Benzyl-4-(2,5-difluorophenyl)piperidin-3-yl]carbamic acid tert-buty\ ester
Figure imgf000032_0001
A combination of (trans)- l-benzyl-4-(2,5-difluorophenyl)-3-nitropiperidine hydrochloride (Preparation 7, 11.12g, 30.17mmol) and zinc dust (15.69g, 241.36mmol) in a mixture of AcOH and EtOH (1 : 1, 1 lOmL) was heated to 80°C. After complete reaction the mixture was filtered and the solvent removed in vacuo. To a solution of the resulting residue in MeOH (30mL) was added HC1 in dioxane (4M, 30mL), and the solvent was removed in vacuo. The material was triturated with Et20 (x 2), then toluene (x 3) to afford the amine intermediate as the hydrochloride salt. To a solution of the intermediate in a mixture of THF (150mL) and water (75mL), cooled to 0°C, was added triethylamine (12.6mL, 90.51mmol), followed by di-tert-butyl dicarbonate (9.59g, 45.26mmol). The mixture was allowed to warm to r.t. and stirred for 16 h, until complete. The mixture was partitioned between EtOAc (750mL) and water (200mL) and the organic phase was separated. The aqueous phase was extracted with EtOAc (500mL), then organic fractions were combined, dried (MgS04) and the solvent removed in vacuo. Purification by column chromatography (IH:EtOAc, 80:20) followed by further purification by chiral HPLC (IH:IPA:DEA, 90: 10:0.1, 15ml/min, 270nm, RT = 9.8 min) afforded the title compound: RT = 2.68 min mlz (ES+) = 403.2 [M+ H]+.
Preparation 9: [(3R,4R)-4-(2,5-Difluorophenyl)piperidin-3-yl]carbamic acid tert-buty\ ester
Figure imgf000032_0002
A solution of [(3i?,4i?)-l-benzyl-4-(2,5-difluorophenyl)piperidin-3-yl]carbamic acid tert-butyl ester (Preparation 8, 1.89g, 4.70mmol) in MeOH (94mL) was passed through an H-Cube apparatus (10% pd/C Catcart 70, 30bar, 80°C) at a flow rate of lmL per min. The solvent was removed in vacuo to afford the title compound: RT = 2.37 min; mlz (ES+) = 313.2[ + H]+. Preparation 10: l-Piperidin-4-yl ethanol
To a solution of a-methyl-4-pyridine methanol (3.7g, 30mmol) in EtOH (lOOmL) was added AcOH (1.9mL, 33mmol) and platinum oxide (0.5g, 2.2mmol), and the resulting mixture was allowed to stir under an atmosphere of hydrogen at r.t. for 16h. The mixture was filtered and the filtrate was concentrated in vacuo. To a solution of the residue, dissolved in MeOH, was added a solution of NaOH (1.6g, 40mmol) and water (1.6mL) in MeOH. The reaction was stirred for 30 min before removing the solvent in vacuo, and the resulting residue was suspended in Et20 for 30 min. The mixture was filtered and the filtrate was concentrated in vacuo to afford the title compound: 1H NMR 5H (400MHZ, CDCI3): 3.63 - 3.55 (m, 1H), 3.39 - 3.31 (m, 2H), 2.7 - 2.6 (m, 2H), 2.01 - 1.92 (m, 2H), 1.76 - 1.69 (m, 1H), 1.67 - 1.54 (m, 2H), 1.51 - 1.42 (m, 1H), 1.1 - 1.14 (m, 3H).
Preparation 11: (S)-l-Piperidin-4-yl ethanol
The title compound was prepared from (5)-(-)-a-methyl-4-pyridinemethanol employing the procedure outlined in Preparation 10: 1H NMR δΗ (400MHz, CDC13): 3.63 - 3.55 (m, 1H), 3.39 - 3.31 (m, 2H), 2.7 - 2.6 (m, 2H), 2.01 - 1.92 (m, 2H), 1.76 - 1.69 (m, 1H), 1.67 - 1.54 (m, 2H), 1.51 - 1.42 (m, 1H), 1.1 - 1.14 (m, 3H).
Preparation 12: 4-Hydroxymethylpiperidine-l-carboxylic acid isopropyl ester
To a solution of 4-piperidine methanol (12. Og, 104.12mmol) in DCM (200mL) in a 3- necked flask, under argon, was added DIPEA (23.6mL, 135.42mmol) and the reaction was cooled to 0°C. A solution of isopropylchloroformate in toluene (1M, 120mL, 119.79mmol) was added, dropwise, over 1.5h, then the reaction was brought to r.t. and stirred for a further 2.5 h. The mixture was partitioned with 1M HC1 solution (200mL) then the organic layer was separated, washed with 1M HC1 solution (200mL), brine (200mL) and dried (MgSC^). Removal of the solvent in vacuo afforded the title compound: 1H NMR δΗ (400MHz,
CDCI3): 4.96 - 4.86 (m, 1H), 4.09 - 4.25 (m, 2H), 3.51 (d, J = 6.2 Hz, 2H), 2.80 - 2.68 (m, 2H), 1.78 - 1.62 (m, 3H), 1.49 - 1.41 (m, 1H), 1.29 - 1.09 (m, 8H). The following compounds were prepared from the appropriate piperidine starting material employing the procedure outlined in Preparation 12:
Figure imgf000034_0002
Preparation 15: 4-(6-Bromopyridin-3-yloxymethyl)piperidine-l-carboxylic acid isopropyl ester
Figure imgf000034_0001
To a dry solution of ADDP (5.01g, 19.87mmol) in toluene (200mL) was added tri n- butylphosphine (4.95mL, 19.87mmol) followed by 6-bromopyridin-3-ol (1.73g, 9.94mmol) and the reaction was cooled to 0°C for 5 min. A solution of 4-hydroxymethylpiperidine-l- carboxylic acid isopropyl ester (Preparation 12, 2.0g, 9.94mmol) in toluene (50mL) was added to the solution, dropwise, over 5 min, and the reaction was allowed to stir at 0°C for 16h. IH (200mL) was added and the reaction was stirred for 10 min before filtering the mixture to remove the precipitate. The filtrate was washed with 2M NaOH solution (2 x 150mL), water (150mL), 1M HC1 solution (2 x 150mL), and brine (150mL), then dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 4: 1, 3:1) afforded the title compound: RT = 3.87 min; mlz (ES+) = 359.1 [M + H]+.
Preparation 16: (3S,4S)-4-Azido-l-benz lpyrrolidin-3-ylamine
Figure imgf000035_0001
To a solution of (SS^^-S^-diazido-l-benzylpyrrolidine (15.6g, 64.10mmol) in THF (500mL), cooled to 0°C, was added a solution of triphenylphosphine (16.5g, 62.81mmol) in THF (lOOmL), dropwise over 4 h. The resulting mixture was allowed to reach r.t., and stirred for 16h. The reaction solvent was removed in vacuo and the resulting residue was re- dissolved in THF (500mL) and water (1.3mL). The mixture was heated to reflux for 4h, then stirred at r.t. for 16h. The reaction solvent was removed in vacuo and the resulting residue was triturated with Et20. The precipitate was filtered and the filtrate was concentrated in vacuo. The residue was taken into Et20 again and filtered. Removal of the filtrate in vacuo followed by purification by column chromatography (IH:EtOAc, 90: 10, 80:20, 50:50, 0: 100 then MeOH:NH4OH, 9: 1) afforded the title compound: RT = 0.77 min; mlz (ES+) = 218.1 [M + H]+.
Preparation 17: ((3S,4S)-4-Azido-l-benzylpyrrolidin-3-yl)carbamic acid tert-buty\ ester
Figure imgf000035_0002
To a solution of (35',45)-4-azido-l-benzylpyrrolidin-3-ylamine (Preparation 16,
6.0g, 27.74mmol) and triethylamine (4.6mL, 33.29mmol) in DCM (lOOmL), cooled to 0°C, was added a solution of di tert-butyldicarbonate (7.3g, 33.29mmol) in DCM (lOmL), dropwise over 20 min. The resulting mixture was allowed to reach r.t., and stirred for 72h. The reaction solvent was washed with sat. NaHC03 solution, then brine, and dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (DCM:MeOH) afforded the title compound: 1H NMR δΗ (400MHz, CDC13): 7.37 - 7.26 (m, 5H), 4.09 - 4.02 (m, 1H), 3.84 - 3.76 (m, 1H), 3.68 - 3.59 (m, 2H), 3.12 - 3.01 (m, 1H), 2.91 - 2.82 (m, 1H), 2.55 - 2.35 (m, 2H), 1.46 (s, 9H). Preparation 18: ((3S,4S)-4-Amino-l-benzylpyrrolidin-3-yl)carbamic acid tert-butyl ester
Figure imgf000036_0001
The title compound was prepared from ((35',45)-4-azido-l-benzylpyrrolidin-3- yl)carbamic acid tert-butyl ester (Preparation 17) employing the procedure outlined in WO2007/148185
Preparation 19: [(3S,4S)-l-Benzyl-4-(2-oxopiperidin-l-yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester
Figure imgf000036_0002
The title compound was prepared in 2 steps from ((3S,4S)-4-amino-l- benzylpyrrolidin-3-yl)carbamic acid tert-butyl ester (Preparation 18) employing the procedures outlined in WO2007/148185. Preparation 20: [(3S,4S)-4-(2-Oxopiperidin-l-yl)pyrrolidin-3-yl]carbamic acid tert- butyl ester
Figure imgf000036_0003
A solution of [(35',45)-l-benzyl-4-(2-oxopiperidin-l-yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 19, 2.6g, 7.07mmol) in MeOH (140mL) was passed through an H-Cube apparatus (10% pd/C Catcart 70, lObar, 90°C) at a flow rate of ImL per min. The solvent was removed in vacuo to afford the title compound: 1H NMR 5H (400MHZ, CDCI3): 5.25 - 5.07 (m, 1H), 4.85 - 4.62 (m, 1H), 4.34 - 4.07 (m, 1H), 3.49 - 3.28 (m, 3H), 3.24 (s, 1H), 2.99 (s, 1H), 2.87 - 2.73 (m, 1H), 2.52 - 2.39 (m, 2H), 2.38 - 2.22 (m, 2H), 1.91 - 1.74 (m, 1H), 1.54 - 1.38 (m, 9H). Preparation 21: 4-Methanesulfonyloxymethylpiperidine-l-carboxylic acid isopropyl ester
To a dry solution of 4-hydroxymethylpiperidine-l-carboxylic acid isopropyl ester (Preparation 12, 2.5g, 12.42mmol) in DCM (30mL), under argon, was added triethylamine (2.08mL, 14.9mmol) and the mixture was cooled to 0°C. Methanesulfonyl chloride (1.06mL, 13.66mmol) was added, dropwise over 4 minutes, then the reaction was stirred at 0°C for 30 min. The mixture was diluted with DCM (50mL) and the organic layer was washed with water (2 x 50mL), 0.5M HC1 solution (2 x 50mL), brine (50mL) then dried (MgS04).
Removal of the solvent in vacuo afforded the title compound: 1H NMR δΗ (400MHz, DMSO-de): 4.95 - 4.85 (m, 1H), 4.25-4.18 (m, 2H), 4.17 - 4.07 (m, 2H), 3.31 (s, 3H), 2.98 - 2.79 (m, 2H), 2.08 - 1.96 (m, 1H), 1.85 - 1.75 (m, 2H), 1.35 - 1.17 (m, 8H)
Preparation 22: 4-(4-Bromophenoxymethyl)piperidine-l-carboxylic acid isopropyl ester
Figure imgf000037_0001
To a solution of 4-methanesulfonyloxymethylpiperidine-l-carboxylic acid isopropyl ester (Preparation 21, 3.40g, 12.17mmol) and 4-bromophenol (2.32g, 13.39mmol) in DMF (70mL), under argon, was added potassium carbonate (3.36g, 24.34mmol) and the reaction was heated to 90°C for 16h. The reaction solvent was removed in vacuo, then the crude residue was dissolved in EtOAc (200mL) before being washed with water (3 x lOOmL). The aqueous layers were combined and extracted with EtOAc (50mL). The organic fractions were then combined, washed with sat. NaHC03 solution (2 x 150mL), brine (150mL), then dried (MgS04). Removal of the solvent in vacuo afforded the title compound: RT = 4.36 min; mlz (ES+) = 536.2 [M+ H]+.
Preparation 23: 4-Methanesulfonyloxymethylpiperidine-l-carboxylic acid tert-butyl ester
To a solution of 4-hydroxymethylpiperidine-l-carboxylic acid tert-butyl ester (5.0g, 23.2mmol) in DCM (lOOmL), cooled to 0°C, was added triethylamine (5.0 mL, 35.9 mmol). To the mixture was added methanesulfonyl chloride, dropwise, over 5 min, and the resulting reaction was stirred at 0°C for 30 min. The mixture was washed with water, then brine, and dried (MgS04). Removal of the solvent in vacuo afforded the title compound: 1H NMR 5H (400MHz, CDC13): 4.24 - 4.09 (m, 2H), 4.08 (d, J= 6.6 Hz, 2H), 3.02 (s, 3H), 2.77 - 2.65 (m, 2H), 1.97 - 1.87 (m, 1H), 1.77 - 1.71 (m, 2H), 1.46 (s, 9 H), 1.29 - 1.15 (m, 2H)
Preparation 24: 4-(2-Chloropyrimidin-5-yloxymethyl)piperidine-l-carboxylic acid tert- butyl ester
Figure imgf000038_0001
To a solution of 4-methanesulfonyloxymethylpiperidine-l-carboxylic acid tert-butyl ester (Preparation 23, 1.47g, 5.0mmol) and 2-chloropyrimidin-5-ol (0.65g, 5.0mmol) in DMF (80mL) was added potassium carbonate (0.83g, 6.0mmol) and the reaction was heated to 80°C until complete. The solvent was removed in vacuo, and the resulting residue was re- dissolved in EtOAc (300mL). The solution was washed with 1M NaOH solution (200mL), brine (200mL), then dried (MgS04) and the solvent was removed in vacuo. Purification by column chromatography (IH:EtOAc, 70:30) afforded the title compound: lH NMR δπ
(400MHz, CDCI3): 8.30 (s, 1H), 4.18 (br. s., 2H), 3.92 (dd, J=6.25, 3.51 Hz, 2H), 2.78 (t, J=12.30 Hz, 2H), 2.09 - 1.95 (m, 1H), 1.84 (d, J=12.89 Hz, 2H), 1.49 (s, 9H), 1.41 - 1.24 (m,
2H).
Preparation 25: 4-(2-Chloropyrimidin-5-yloxymethyl)piperidine-l-carboxylic acid isopropyl ester
Figure imgf000038_0002
To a solution of 4-(2-chloropyrimidin-5-yloxymethyl)piperidine-l-carboxylic acid tert-butyl ester (Preparation 24, 820mg, 2.51mmol) in DCM (25mL) was added a solution of HC1 in dioxane (4M, 2.5 lmL, 10.04mmol) and the reaction was stirred at r.t. until complete. The reaction solvent was removed in vacuo and the resulting residue was re- dissolved in THF. The mixture was cooled to 0°C and triethylamine (0.75mL, 5.52mmol) was added, dropwise, followed by a solution of isopropyl chloro formate in toluene (1M, 3.02mL, 3.02mmol). The mixture was stirred at r.t. for 2 h before concentrating the solvent in vacuo. The residue was dissolved in DCM, washed with sat. NaHC03 solution, then 1M HC1 solution, and the organic phase was passed through a phase separator. Removal of the solvent in vacuo afforded the title compound: RT = 3.65 min; m/z (ES+) = 314.0 [M+ H]+. Preparation 26: 4-(l-Methanesulfonyloxyethyl)piperidine-l-carboxylic acid isopropyl ester
To a dry solution of 4-(l-hydroxyethyl)piperidine-l-carboxylic acid isopropyl ester (Preparation 13, 3.02g, 14.1mmol) in DCM (150mL), under argon, was added triethylamine (2.28mL, 16.9mmol) and the mixture was cooled to 0°C. Methanesulfonyl chloride (1.20mL, 15.5mmol) was added, dropwise over 5 min, and the reaction was allowed to warm to r.t. with stirring until complete. The crude mixture was partitioned between DCM (150mL) and 1M HC1 (500mL), then the organic phase was separated, washed with further 1M HC1 (400mL), dried (MgS04), and the solvent removed in vacuo to afford the title compound: 1H NMR δΗ (400MHz, CDC13): 4.94 (spt, J=6.25 Hz, 1H), 4.68 (quin, J=6.25 Hz, 1H), 4.38 - 4.19 (m, 2H), 3.04 (s, 3H), 2.80 - 2.67 (m, 2H), 1.86 - 1.66 (m, 3H), 1.42 (d, J=6.25Hz, 3H), 1.39 - 1.24 (m, 8H).
Preparation 27: 4-[l-(2-Chloropyrimidin-5-yloxy)ethyl]piperidine-l-carboxylic acid isopropyl ester
Figure imgf000039_0001
The title compound was prepared by reacting 4-(l- methanesulfonyloxyethyl)piperidine-l-carboxylic acid isopropyl ester (Preparation 26) with 2-chloropyrimidin-5-ol employing a similar method to that outlined in Preparation 24, but in this case the reaction was heated to 100°C: RT = 3.75 min; mlz (ES+) = 328.1 [M+ H]+.
Preparation 28: 4-((S)-l-Methanesulfonyloxyethyl)piperidine-l-carboxylic acid isopropyl ester
4-((5)-l-Hydroxyethyl)piperidine-l-carboxylic acid isopropyl ester (Preparation 14) was reacted with methanesulfonyl chloride employing a similar method to that outlined in Preparation 21. The reaction mixture was diluted with EtOAc (50mL) and the organic layer was washed with water (2 x 50mL), 0.5M HC1 solution (2 x 50mL), brine (50mL) then dried (MgS04). Removal of the solvent in vacuo afforded the title compound: 1H NMR 5H
(400MHz , CDCI3): 5.01 - 4.82 (m, 1H), 4.70 - 4.58 (m, 1H), 4.33 - 4.08 (m, 2H), 3.01 (s,
3H), 2.82 -2.53 (m, 2H), 1.88 - 1.55 (m, 3H), 1.41 (d, J=6.25 Hz, 3H), 1.38 - 1.08 (m, 8H) Preparation 29: 4-[(R)-l-(2-Chloropyrimidin-5-yloxy)ethyl]piperidine-l-carboxylic acid isopropyl ester
Figure imgf000040_0001
To a solution of 4-((5)-l-methanesulfonyloxyethyl)piperidine-l-carboxylic acid isopropyl ester (Preparation 28, 1.85g, 6.30mmol) and 2-chloropyrimidin-5-ol (0.69g, 5.25mmol) in DMF (40mL) was added potassium carbonate (1.45g, 10.50mmol) and the reaction was heated to 100°C until complete. The mixture was poured into a combination of water (300mL) and brine (300mL), then the aqueous mixture was extracted with EtOAc (4 x lOOmL). The organic fractions were combined, washed with brine (lOOmL), dried (MgS04) and the solvent removed in vacuo. Purification by column chromatography (IH:EtOAc, 2: 1) afforded the title compound: RT = 3.75 min; m/z (ES+) = 328.1 [M+ H]+.
Preparation 30: 2,4-Difluoro-l-((E)-2-nitr inyl)benzene
Figure imgf000040_0002
A solution of 2,4-difluorobenzaldehyde (25. Og, 0.18mol) and nitromethane (11.4mL,
0.21mol) in MeOH (53mL), under argon, was cooled to -15°C. A solution of NaOH (7.4g, 0.19mol) in water (26mL) was added, dropwise, over 20 min. The resulting mixture was stirred at -15°C and a precipitate formed after 30 min. More MeOH was added to form a slurry and stirring continued for 15 min before allowing the reaction to warm to 0°C. Ice water was added and the mixture was stirred for 15 min before adding 4M HC1 (lOOmL). The organic fraction was extracted with DCM (3 x 300mL), dried (Na2S04) and the solvent removed in vacuo. A portion of the residue (10. Og, 50mmol) was dissolved in acetic anhydride (8.1mL, 90mol) and cooled to 0°C under argon. DMAP (0.4g, 3mmol) was added and the reaction was stirred at this temperature for 20 min before warming the mixture to r.t. and allowing it to stir for a further 16 h. The reaction solvent was removed in vacuo and the resulting residue re-dissolved in DCM. Any remaining acetic anhydride was destroyed by the addition of a small volume of 1M NaOH solution, and the resulting solution was dried (MgS04) and concentrated in vacuo. Purification by column chromatography (DCM) afforded the title compound: RT = 3.60 min; m/z (ES+) = 186.1 [M+ H]+. Preparation 31: (frans)-l-Benzyl-3-(2 4-difluorophenyl)-4-nitropyrrolidine
Figure imgf000041_0001
A solution of 2,4-difluoro-l-((E)-2-nitrovinyl)benzene (Preparation 30, 8.0g, 43.0mmol) in DCM (250mL), under argon, was cooled to -30°C, and N-(methoxymethyl)-N- (trimethylsilylmethyl)benzylamine (11.7mL, 45.0mmol) was added so as to maintain the temperature. The reaction was stirred for 10 min before the dropwise addition of TFA (0.3mL, 4.3mmol), and the resulting mixture was allowed to stir at r.t. over 16 h. The reaction mixture was washed with water, then brine, and dried (Na2S04). Removal of the solvent in vacuo afforded the title compound: RT = 3.05 min; mlz (ES+) = 319.1 [M+ H]+.
Preparation 32: [(irans)-l-Benzyl-4-(2,4-difluorophenyl)pyrrolidin-3-yl]carbamic acid terf-butyl ester
Figure imgf000041_0002
A combination of (trans)- l-benzyl-3-(2,4-difluorophenyl)-4-nitropyrrolidine
(Preparation 31, 25. Og, 0.08mol) and zinc dust (17.8g, 0.28mol) in a mixture of AcOH and EtOH (1 : 1, 500mL) was heated to 70°C. After 45 h a further portion of zinc dust (12.0g, 0.18mol) was added and heating continued for 20 min. After complete reaction the solvent was removed in vacuo. The resulting residue was re-dissolved in EtOAc, washed with sat. NaHCC"3 solution, then brine, and dried (Na2S04). Removal of the solvent in vacuo afforded the intermediate product (tra/75)-l-benzyl-4-(2,4-difluorophenyl)pyrrolidin-3-ylamine: RT = 1.82 min; mlz (ES+) = 289.1 [M+ H]+.
To a solution of the product in THF (400mL), under argon, was added triethylamine (20.4mL, 0.15mol) and the solution was cooled to 0°C. Di-tert-butyl dicarbonate (19.0g, 0.09mol) was added over 5 min and the reaction was allowed to reach r.t. over 16 h. The solvent was removed in vacuo, then the resulting residue was re-dissolved in EtOAc, washed with brine, dried (Na2S04), and the solvent removed in vacuo. To the product was added heptane (lOOmL), and the suspension was sonicated until fully dissolved. The solution was allowed to stand for 60 h, allowing formation of a prepipitate. The solvent was decanted and the solids washed with a fresh portion of heptane (50mL) to afford the title compound: RT = 2.74 min; mlz (ES+) = 389.3 [M+ H]+.
Preparation 33: [(3R,4S)-l-Benzyl-4-(2,4-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester
Figure imgf000042_0001
The title compound was afforded via chiral HPLC separation of [(trans)- l-benzyl-4- (2,4-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 32):
IH:IPA:DEA 96:4:0.1, 15ml/min, 270nm, RT = 9.8 min.
Preparation 34: [(3R,4S)-4-(2,4-Difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester
Figure imgf000042_0002
The title compound was prepared from [(3i?,45)-l-benzyl-4-(2,4- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 33) employing the procedure outlined in Preparation 20, but at a temperature of 50°C: RT = 2.38 min; mlz
Figure imgf000042_0003
Preparation 35: 2,4,5-Trifluoro-l-((E)-2-nitr inyl)benzene
Figure imgf000042_0004
The title compound was prepared from 2,4,5-trifluorobenzaldehyde employing a similar method to that outlined in Preparation 30. After reaction with DMAP the crude mixture was diluted with sat. NaHC03 solution. The precipitate that formed was stirred for 30 min, filtered, and dried under vacuum to afford the title compound: 1H NMR 5H (300MHZ , CDC13): 7.97 - 7.93 (m, 1H), 7.66 - 7.62 (m, 1H), 7.42 - 7.26 (m, 1H), 7.16 - 6.96 (m, 1H)
Preparation 36: (frans)-l-Benzyl-3-(2,4,5-trifluorophenyl)-4-nitropyrrolidine
Figure imgf000043_0001
The title compound was prepared from 2,4,5-trifluoro-l-((E)-2-nitrovinyl)benzene (Preparation 35) employing the method outlined in Preparation 31, but the reaction was carried out at 0°C. Purification by column chromatography (Hexane:EtOAc, 100:0, 98:2, 95:5, 90:10) afforded the title compound. LCMS Method 2: RT = 0.94 min; mlz (ES+) = 337.2 [M+ H]+.
Preparation 37: [(irans)-l-Benzyl-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-buty\ ester
Figure imgf000043_0002
A combination of (tra/75)-l-benzyl-3-(2,4,5-trifluorophenyl)-4-nitropyrrolidine
(Preparation 36, 11.5g, 0.03mol) and zinc dust (18.0g, 0.28mol) in a mixture of AcOH and IMS (1 :1, 210mL) was heated to 65°C. After complete reaction the mixture was filtered, washing with AcOH, and the filtrate was concentrated in vacuo. The resulting residue was re-dissolved in EtOAc, washed with sat. NaHC03 solution, then brine, and dried (Na2S04). Removal of the solvent in vacuo and purification by column chromatography (DCM:MeOH, 100:0, 80:20) afforded the intermediate product (tra/?s)-l-benzyl-4-(2,4,5- trifluorophenyl)pyrrolidin-3-ylamine. LCMS Method 2: RT = 0.82 min; mlz (ES+) = 307.2 [M+ H]+.
To a solution of the product in THF (1 lOmL), under argon, was added triethylamine (3.9mL, 0.04mol) and the mixture was cooled to 0°C. Di-tert-butyl dicarbonate (4.7g, 0.02mol) was added over 5 min, then the reaction was allowed to reach r.t. and stirred for 16 h. The solvent was removed in vacuo, then the resulting residue was re-dissolved in EtOAc, washed with brine, dried (Na2S04), and the solvent was removed in vacuo. The product was triturated several times with heptane to afford the title compound. LCMS Method 3 : RT = 3.10 min; mlz (ES+) = 407.3 [M+ H]+.
Preparation 38: [(frans)-4-(2,4,5-Trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert- butyl ester
Figure imgf000044_0001
A solution of [(tra/75)-l-benzyl-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 37, 40. lg, 98.8mmol) in a combination of IMS (325mL) and EtOAc (50mL), in an autoclave, was placed under an atmosphere of argon. Palladium on carbon (5%, 4.0g, 1.9mmol) was added as a slurry in the minimum volume of toluene, then the reaction mixture was placed under an atmosphere of hydrogen (50atm) and stirred for 72 h. The crude mixture was filtered through celite, washing with EtOAc, and the filtrate was concentrated in vacuo to afford the title compound. LCMS Method 4: RT = 2.42 min; mlz
Figure imgf000044_0002
Preparation 39: [(3R,4S)-4-(2,4,5-Trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert- butyl ester
Figure imgf000044_0003
[(tra/75)-4-(2,4,5-Trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 38, 30. Og, 95mmol) was suspended in EtOH (lOOmL) and heated to 70°C. To the suspension was added a warm solution of (S)-(+)-naproxen (10.9g, 47mmol) in EtOH (lOOmL) and the mixture was heated to reflux. The heat was removed and the mixture was slowly allowed to cool to r.t., with stirring, for 16 h. The resulting precipitate was filtered, washing with EtOH, and the solid product was partitioned between DCM (2400mL) and 1M NaOH (600mL). The organic phase was separated, washed with 1M NaOH, brine, then dried (MgS04), and the solvent was removed in vacuo.
A second portion of [(tra/75)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-bvXy\ ester (Preparation 38, 29.5g, 93mmol), suspended in EtOH (lOOmL), was heated to 70°C. Treatment with a warm solution of (5)-(+)-naproxen (10.6g, 46mmol) in EtOH (lOOmL), employing the procedure outlined above, afforded a second batch of the enantiomerically enriched product.
The two products were combined, and suspended in EtOH (200mL) before being treated with a hot solution of (5)-(+)-naproxen (16g, 69mmol) in EtOH (150mL). The mixture was heated to reflux, employing the procedure outlined above, and work-up was repeated to afford the title compound: 1H NMR δΗ (400MHz , CD3OD): 7.38 - 7.25 (m, 1H), 7.14 - 7.01 (m, 1H), 4.20 - 4.09 (m,l H), 3.30 - 3.21 (m, 3H), 2.90 - 2.81 (m, 1H), 2.77 - 2.68 (m, 1H), 1.34 (br. s., 9H) Preparation 40: [(irans)-l-Benzyl-4-(2,3-difluorophenyl)pyrrolidin-3-yl]carbamic acid terf-butyl ester
Figure imgf000045_0001
The title compound was prepared in 3 steps from 2,3-difluorobenzaldehyde employing the procedures outlined in the synthesis of Preparation 37. LCMS Method 3: RT = 3.04 min; mlz (ES+) = 389.3 [M+ H]+.
Preparation 41: [(3R,4S)-l-Benzyl-4-(2,3-difluorophenyl)pyrrolidin-3-yl]carbamic acid terf-butyl ester
Figure imgf000045_0002
The title compound was afforded via chiral HPLC separation of [(trans)- l-benzyl-4- (2,3-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 40):
IH:IPA:DEA 96.5:3.5:0.1, 15ml/min, 270nm, RT = 10.6 min. Preparation 42: [(3R,4S)-4-(2,3-Difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester
Figure imgf000046_0001
The title compound was prepared from [(3i?,45)-l-benzyl-4-(2,3- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 41) employing the procedure outlined in Preparation 20, but at a pressure of 30 bar: 1H NMR δΗ (400MHz , CDCI3): 7.17 - 6.93 (m, 3H), 4.31 - 4.08 (m, 1H), 3.57 - 3.39 (m, 2H), 3.38 - 3.17 (m, 1H), 3.06 - 2.81 (m, 2H), 1.40 (br. s., 9H).
Preparation 43: [(irans)-l-Benzyl-4-(4-chloro-2-fluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester
Figure imgf000046_0002
The title compound was prepared in 3 steps from 4-chloro-2-fluorobenzaldehyde employing the procedures outlined in the synthesis of Preparation 37. LCMS Method 3: RT = 3.25 min; m/z (ES+) = 405.4 [M+ H]+.
Preparation 44: [(frans)-3-terf-Butoxycarbonylamino-4-(4-chloro-2- fluorophenyl)pyrrolidine-l-carboxylic acid tert-butyl ester
Figure imgf000046_0003
To a solution of [(tra/75)-l-benzyl-4-(4-chloro-2-fiuorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 43, 2.03g, 5.01mmol) in DCE was added 1,8- bis(dimethylamino)naphthalene (1.02g, 4.76mmol) and 1-chloroethyl chloroformate (1.60mL, 14.70mmol), and the reaction was heated to reflux for 1 h before being stirred at r.t. for 16 h. The crude mixture was passed through a silica plug (DCM:MeOH, 100:0, 10: 1, 4: 1) and the polar fractions were combined and concentrated in vacuo. The resulting residue was dissolved in MeOH (lOOmL) and heated to reflux for 3 h before being allowed to cool to r.t.. To the solution was added DIPEA (5mL, 28.7mmol) followed by άι-tert- butyldicarbonate (3.02g, 13.8mmol), and the mixture was stirred at r.t. for 45 min before removal of the solvent in vacuo. The residue was taken up in EtOAc (300mL), washed with water, then brine, and dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 3: 1) afforded the title compound: RT = 3.34 min; mlz
Figure imgf000047_0001
Preparation 45: [(irans)-4-(4-Chloro-2-fluorophenyl)pyrrolidin-3-yl]carbamic acid tert- butyl ester
Figure imgf000047_0002
A suspension of zinc bromide (5.00g, 19.6mmol) in DCM (50mL), under argon, was stirred at r.t. for 16 h. An aliquot of the suspension (3.50mL) was added to [(trans)-3-tert- butoxycarbonylamino-4-(4-chloro-2-fiuorophenyl)pyrrolidine-l-carboxylic acid tert-butyl ester (Preparation 44, 0.25g, 0.6mmol) and the mixture was stirred for a further 4 h. 1M NaOH solution (lOOmL), was added, followed by EtOAc (lOOmL), and the mixture was stirred for 10 min before being filtered. The filtrate was extracted with EtOAc then the organic phase was washed with brine, dried (MgS04) and concentrated in vacuo. Purification by column chromatography (DCM:MeOH, 10:1, 8:2) afforded the title compound: RT = 2.53 min; mlz (ES+) = 315.1 [M+ H]+. Preparation 46: [(irans)-l-Benzyl-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-buty\ ester
Figure imgf000048_0001
The title compound was prepared in 3 steps from 2,5-difluorobenzaldehyde employing the procedures outlined in the synthesis of Preparation 37. LCMS Method 3: RT = 3.04 min; m/z (ES+) = 389.3 [M+ H]+.
Preparation 47: [(3R,4S)-l-Benzyl-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-buty\ ester
Figure imgf000048_0002
The title compound was afforded via chiral HPLC separation of [(trans)- l-benzyl-4- (2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 46):
IH:IPA:DEA 96:4:0.1, 15ml/min, 270nm, RT = 10.9 min.
Preparation 48: [(3R,4S)-4-(2,5-Difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester
Figure imgf000048_0003
The title compound was prepared from [(3i?,45)-l-benzyl-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 47) employing the procedure outlined in Preparation 20, but the reaction was carried out under 30 bar pressure. RT = 2.35 min; m/z (ES+) = 299.2 [M+ H]+. Preparation 49: (R)-3-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]butyric acid
Figure imgf000049_0001
To a stirring solution of concentrated H2SO4 (5mL) was added chromium (VI) oxide (5g) and a thick brown paste resulted. The paste was added to water (15mL), cooled to 0°C with stirring, and a bright red/orange solution formed.
To a separate solution of (i?)-3-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]butan-l-ol (250mg, 0.94mmol) in acetone (lOOmL), cooled to 0°C, was added the red Jones' reagent, dropwise, until no change from the yellow colour was observed. The reaction was quenched by the addition of a few drops of IP A, and the mixture was concentrated in vacuo. The resulting residue was partitioned between EtOAc (lOOmL) and water (50mL), and the organic phase was separated. The aqueous fraction was extracted with EtOAc (lOOmL), then the organic fractions were combined, washed with brine, dried (MgS04), and the solvent removed in vacuo to afford the title compound: RT = 3.12 min; mlz (ES ) = 282.1 [M+ H]+.
Preparation 50: 4-Hydroxymethylpiperidine-l-carbonitrile
To a solution of 4-piperidinemethanol (15g, 0.13mol) in DCM (60mL) was added a slurry of NaHC03 (44. Og) in water (60mL), and the mixture was cooled to 0°C. A solution of cyanogen bromide in DCM (3M, 48.5mL, 0.15mol) was added, dropwise, over 40 min, and the reaction was warmed to r.t. over 90 min. The mixture was filtered and the organic phase was separated. The aqueous phase was extracted with DCM, then organic fractions were combined, washed with sat. NaHC03 solution, brine, and dried (MgS04). The solvent was removed in vacuo to afford the title compound: 1H NMR δΗ (300MHz , CDC1 ): 3.56 - 3.35 (m, 4H), 3.10 - 2.91 (m, 2H), 1.85 - 1.51 (m, 4H), 1.46 - 1.25 (m, 2H).
Preparation 51 : [(1 -(3-Ethyl- [ 1 ,2,4] oxadiazol-5-yl)piperidin-4-yl] methanol
4-Hydroxymethylpiperidine-l-carbonitrile (Preparation 50, 7.5g, 0.05mol) was combined with N-hydroxypropionamidine (5.7g, 0.06mol) in EtOH (150mL). To the mixture was added a solution of zinc(II)chloride (8.8g, 0.06mol) in EtOH (lOmL) over 15 min, and the reaction was stirred at r.t. for 2 h. To the mixture was then added concentrated HC1 (25mL), over 5 min, and the reaction was heated to reflux for 4 h. The reaction solvent was concentrated in vacuo, and water was added. The mixture was brought the pH7 with
NaHC03 and extracted with EtOAc. The organic fraction was washed with brine, dried (MgS04), and the solvent removed in vacuo. Purification by column chromatography afforded the title compound. LCMS Method 3: RT = 1.12 min; mlz (ES+) = 212.1 [M+ H]+.
Preparation 52: Methanesulfonic acid-l-(3-Ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethyl ester
To a dry solution of [(l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]methanol
(Preparation 51, 3.50g, 16.57mmol) in DCM (95mL) was added triethylamine (4.60mL, 33.13mmol) and the mixture was cooled to 5°C. Methanesulfonyl chloride (1.30mL, 16.57mmol) was added, dropwise, over 5 min and the reaction was allowed to warm to r.t., with stirring, until complete. The crude mixture was partitioned between DCM and 1M HCl, then the organic phase was separated, dried (Na2S04) and the solvent removed in vacuo to afford the title compound. LCMS Method 2: RT = 0.65 min; mlz (ES+) = 290.1 [M+ H]+.
Preparation 53 : 2-Chloro-5- [ l-(3-ethyl- [ 1 ,2,4] oxadiazol-5-yl)piperidin-4- ylmethoxy] pyrimidine
Figure imgf000050_0001
A combination of methanesulfonic acid-l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethyl ester (Preparation 52, 440mg, 1.51mmol), 2-chloropyrimidin-5-ol (270mg, 1.81mmol) and potassium carbonate (417mg, 3.02mmol) in DMF (20mL) was heated to 100°C in a microwave reactor for 2 h. The reaction solvent was concentrated in vacuo and the resulting residue was dissolved in EtOAc. The solution was washed with 1M NaOH solution (x 2), brine, then dried (MgS04), before removal of the solvent in vacuo.
Purification by column chromatography (DCM:MeOH, 95:5) afforded the title compound: 1H NMR δΗ (400MHz , CDC13): 8.27 (s, 1H), 8.25 (s, 1H), 4.26 - 4.15 (m, 2H), 3.95 - 3.85 (m, 2H), 3.15 - 3.00 (m, 2H), 2.62 - 2.50 (m, 2H), 2.15 - 2.01 (m, 1H), 1.97 - 1.85 (m, 2H), 1.52 - 1.38 (m, 2H), 1.30 - 1.19 (m, 3H). Preparation 54: 4-[l-(6-Bromopyridin-3-yloxy)ethyl]piperidine-l-carboxylic acid isopropyl ester
Figure imgf000051_0001
To a solution of 4-(l-methanesulfonyloxyethyl)piperidine-l-carboxylic acid isopropyl ester (Preparation 26, 967mg, 3.30mmol) and 6-bromopyridin-3-ol (632mg, 3.63mmol) in DMF (lOmL) was added potassium carbonate (1366mg, 9.90mmol) and the reaction was heated to 100°C for 16 h. The solvent was concentrated in vacuo and the residue purified by column chromatography (IH:EtOAc, 2: 1). The product was dissolved in a small volume of MeOH and crystals were allowed to form. The crystals were removed by filtration, and the filtrate concentrated in vacuo to afford the title compound: RT = 2.45 min; mlz (ES+) = 371.0, 373.0 [M+ H]+.
Preparation 55: 2-Chloro-5-methoxy-4-methylpyrimidine
To a solution of 2,4-dichloro-5-methoxypyrimidine (1.5g, 8.38mmol) in THF (15mL), under argon, was added trimethylboroxine (1.2g, 9.22mmol),
dichlorobis(triphenylphosphine)palladium (0.6g, 0.84mmol) and potassium phosphate (3.6g, 16.76mmol) and the mixture was heated to reflux for 16 h. The reaction was diluted with EtOAc, washed with water, then dried (Na2S04). Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 100:0, 90: 10, 80:20, 70:30) afforded the title compound: RT = 2.45 min; mlz (ES+) = 159.0 [M+ H]+.
Preparation 56: 2-Chloro-4-methylpyrimidin-5-ol
A dry solution of 2-chloro-5-methoxy-4-methylpyrimidine (Preparation 55, l . lg, 6.94mmol) in DCM (20mL), under argon, was cooled to -78°C. Boron tribromide (2.63mL, 27.82mmol) was added, dropwise over 15 min, then the reaction was allowed to stir at -78°C for 20 min before being stirred at r.t. for a further 16 h. The mixture was cooled down to - 78°C and quenched by the dropwise addition of MeOH. The reaction was allowed to reach r.t. then NaHCCb was carefully added to adjust the pH to 5. The mixture was extracted with EtOAc and the organic phase was washed with brine, then dried (Na2S04). Removal of the solvent in vacuo and trituration with DCM afforded the title compound: RT = 2.13 min; mlz (ES+) = 145.0 [Μ+ ηγ. Preparation 57: 2-Chloro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy] -4-methylpyrimidine
Figure imgf000052_0001
To a solution of [(l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]methanol (Preparation 1, 1.40g, 5.84mmol) and triethylamine (0.98mL, 7.01mmol) in DCM (20mL), cooled to 0°C, was added methanesulfonyl chloride (0.50mL, 6.43mmol), dropwise, before removing the ice bath and allowing the reaction to stir at r.t. for 1 h. 1M HCl was added and the organic phase was separated, dried (Na2S04), and concentrated in vacuo to afford the intermediate product methanesulfonic acid l-(3-isopropyl[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethyl ester.
To a solution of the intermediate (0.79g, 2.61mmol) in DMF (lOmL) was added 2- chloro-4-methylpyrimidin-5-ol (Preparation 56, 0.38g, 2.61mmol) and potassium carbonate (0.72g, 5.21mmol), and the reaction was heated to 80°C in a sealed tube for 48 h. The reaction solvent was diluted with EtOAc, washed with brine, dried (Na2S04), and concentrated in vacuo. Purification by column chromatography (DCM:MeOH, 98:2) afforded the title compound: RT = 3.68 min, m/z (ES+) = 352.1 [M+ H]+.
Preparation 58: [l-(5-Isopropyl-[l,2,4]oxadiazol-3-yl)piperidin-4-yl]methanol
To a solution of 4-hydroxymethylpiperidine-l-carbonitrile (Preparation 50, 7.00g, 50mmol) in IMS (lOOmL) was added hydroxylamine (50% in water, 6.06mL, lOOmmol) and the reaction was stirred at r.t. for 30 min. The solvent was concentrated in vacuo and the residue azeotroped three times from toluene to afford the amidoxime intermediate.
To a solution of the amidoxime (8.66g, 50mmol) and DIPEA (36.9mL, 120mmol) in DMF (80mL) was added isobutyric acid (4.87mL, 53mmol) followed by HBTU (22.70g, 60mmol), portionwise, and the reaction was stirred at r.t. for 16 h. The mixture was diluted with water and extracted with EtOAc (x 3). The organic fractions were combined, washed with sat. NaHCCb solution, brine, and the solvent removed in vacuo. The resulting residue was dissolved in toluene (50mL) and heated to reflux for 3 h before removing the solvent in vacuo. Purification by column chromatography (DCM:MeOH, 100:0, 95:5, 90:10) afforded the title compound. LCMS Method 4: RT = 2.25 min; m/z (ES+) = 226.2 [M + H]+. Preparation 59: Methanesulfonic acid l-(5-isopropyl-[l,2,4]oxadiazol-3-yl)piperidin-4- ylmethyl ester
The title compound was prepared from [l-(5-isopropyl-[l,2,4]oxadiazol-3- yl)piperidin-4-yl]methanol (Preparation 58) employing the procedure outlined in
Preparation 52. LCMS Method 3 : RT = 1.73 min; mlz (ES+) = 304.2 [M+ H]+.
Preparation 60 : 2-Chloro-5- [ l-(5-Isopr opyl- [ 1 ,2,4] oxadiazol-3-yl)piperidin-4- ylmethoxy] pyrimidine
Figure imgf000053_0001
Methanesulfonic acid l-(5-isopropyl-[l,2,4]oxadiazol-3-yl)piperidin-4-ylmethyl ester
(Preparation 59) was reacted with 2-chloropyrimidin-5-ol employing the procedure outlined in Preparation 53. Purification by column chromatography (heptane:EtOAc, 100:0, 50:50) afforded the title compound: 1H NMR δΗ (300MHz , CDC13): 8.29 (s, 2H), 4.15 - 4.05 (m, 2H), 3.94 - 3.87 (m, 2H), 3.12 - 3.01 (m, 1H), 2.99 - 2.86 (m, 2H), 2.13 - 1.97 (m, 1H), 1.94 - 1.83 (m, 2H), 1.51 - 1.39 (m, 2H), 1.35 (d, J= 7.3 Hz, 6H).
Preparation 61: (R)-l-Piperidin-4-yl ethanol
The title compound was prepared from (i?)-(+)-a-Methyl-4-pyridinemethanol employing the procedure outlined in Preparation 10, but carrying out the reaction over 64 h: 1H NMR δΗ (400MHz, CDC13): 3.63 - 3.55 (m, 1H), 3.39 - 3.31 (m, 2H), 2.7 - 2.6 (m, 2H), 2.01 - 1.92 (m, 2H), 1.76 - 1.69 (m, 1H), 1.67 - 1.54 (m, 2H), 1.51 - 1.42 (m, 1H), 1.14 - 1.10 (m, 3H).
Preparation 62 : (R)- 1- [ l-(3-Isopr opyl- 1 ,2,4] oxadiazol-5-yl)piperidin-4-yl] ethanol
Figure imgf000053_0002
To a solution of (i?)-l-piperidin-4-yl ethanol (Preparation 61, 519mg, 4.02mmol) in DCM (40mL), under argon, was added NaHC03 (1350mg, 10.08mmol) and water (20mL), and the reaction was cooled to 0°C. A solution of cyanogen bromide (51 lmg, 4.83mmol) in DCM (20mL) was added, dropwise over 5 min, then the reaction was stirred at 0°C for 30 min before being allowed to warm to r.t.. The mixture was diluted with DCM, and the organic phase was separated, washed with sat. NaHC03 solution (2 x lOOmL), brine, then dried (MgS04). Removal of the solvent in vacuo afforded the cyano intermediate.
To a solution of the intermediate in EtOH (30mL) was added N- hydroxyisobutyramidine (367mg, 3.60mmol), followed by zinc(II)chloride, and the reaction was stirred at r.t. for 2 h. Concentrated HCl (629mL, 17.25mmol) was added and the reaction was heated to 50°C for 16 h, before concentrating the solvent in vacuo. To the residue was added sat. NaHC03 solution, and the mixture was washed with EtOAc (4 x 250mL). The organic fractions were combined, washed with brine, dried (MgS04), and the solvent removed in vacuo to afford the title compound: RT = 2.72 min; mlz (ES ) = 240.1 [M+ H]+.
Preparation 63: 2-Chloro-5-{(S)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl] ethoxy}pyrimidine
Figure imgf000054_0001
To a solution of (i?)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethanol (Preparation 62, 570mg, 2.38mmol) and triethylamine (390μΕ, 2.86mmol) in DCM
(42mL), cooled to 0°C, was added methanesulfonyl chloride (204μΕ, 2.86mmol) and the reaction was allowed to warm to r.t. over 1 h. Further portions of methanesulfonyl chloride (92μΕ, 1.19mmol) and triethylamine (199μΕ, 1.43mmol) were added and stirring continued for 16 h. The mixture was partitioned between DCM (lOOmL) and 1M HCl (250mL), then the organic phase was separated and concentrated in vacuo. To a solution of the residue in DMF (15mL) was added 2-chloropyrimidin-5-ol (373mg, 2.86mmol) and potassium carbonate (985mg, 7.34mmol), and the mixture was heated to 80°C for 48 h. The reaction solvent was concentrated in vacuo, then azeotroped once from toluene. The residue was dissolved in EtOAc, washed with brine, dried (MgS04), and the solvent removed in vacuo. Recrystallisation from MeOH, followed by column chromatography (IH:EtOAc, 70:30) afforded the title compound: RT = 3.82 min; mlz (ES+) = 352.1 [M+ H]+. Preparation 64: (3R,4S)-4-(2,5-Difluorophenyl)-l-[5-(piperidin-4-ylmethoxy)pyrimidin- 2-yl] pyr rolidin-3-ylamine
Figure imgf000055_0001
To a combination of 4-(2-chloropyrimidin-5-yloxymethyl)piperidine-l-carboxylic acid tert-butyl ester (Preparation 24, 165mg, 0.5mmol) and [(3R,4S)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, lOOmg, 0.33mmol) in DMSO (lmL) was added DBU (T4uL, 0.5mmol) and the reaction was heated to 100°C for 225 min before being cooled to r.t.. The mixture was diluted with water, and extracted with DCM. The organic fraction was washed with brine, concentrated in vacuo, and purified by column chromatography (DCM:MeOH, 95:5) to afford the intermediate product 4-{2-[(3i?,45)-3-tert-butoxycarbonylamino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyrimidin-5-yloxymethyl}piperidine-l-carboxylic acid tert-butyl ester: RT = 4.67 min; m/z (ES+) = 590.3 [M+ H]
To a solution of the product in DCM (5mL) was added TFA (lmL) and the reaction was stirred at r.t. for 1 h. The crude mixture was passed directly down an SCX cartridge, eluting with MeOH followed by NH4OH in MeOH, and the basic fraction was collected. Removal of the solvent in vacuo afforded the title compound: RT = 1.82 min; m/z (ES ) =
Figure imgf000055_0002
Preparation 65: 4-Cyanopiperidine-l-carboxylic acid isopropyl ester
To a solution of 4-cyanopiperidine (29.74g, 0.27mol) in toluene (300mL), under argon, was added triethylamine (57mL, 0.41mol) and the reaction was cooled to 0°C. A solution of isopropyl chloroformate in toluene (1M, 297mL, 0.30mol) was added, dropwise, then the resulting mixture was allowed to warm to r.t., and stirred for 1 h. The crude reaction mixture was filtered and the filtrate concentrated in vacuo. The resulting residue was dissolved in EtOAc, washed with water, then brine, and dried (MgSC^). Removal of the solvent in vacuo and purification by column chromatography (hexane:EtOAc, 70:30) afforded the title compound: 1H NMR δΗ (400MHz , CDC13): 4.93 - 4.83 (m, 1H), 3.72 - 3.61 (m, 2H), 3.40 - 3.31 (m, 2H), 2.83 - 2.74 (m, 1H), 1.90 - 1.71 (m, 4H), 1.21 (d, 6H). Preparation 66: 4-(N-Hydroxycarbamimidoyl)piperidine-l-carboxylic acid isopropyl ester
Figure imgf000056_0001
To a mixture of 4-cyanopiperidine-l-carboxylic acid isopropyl ester (Preparation 65, 47.17g, 0.24mol), potassium carbonate in water (35.38g, 0.26mol, 400mL) and EtOH (225mL) was added hydroxylamine hydrochloride (35.58g, 0.51 mo 1) and the mixture was heated to reflux for 16 h. After cooling to r.t. the EtOH was removed in vacuo, and the aqueous layer was extracted with EtOAc (x 2). The organic fractions were combined, washed with water (x 2), then brine, and dried (MgSC^). Removal of the sovent in vacuo afforded the title compound: 1H NMR δΗ (400MHz , CDC13): 4.94 - 4.84 (m, 1H), 4.56 (br s, 2H), 4.26 - 4.10 (m, 2H), 2.81 - 2.69 (m, 2H), 2.31 - 2.22 (m, 1H), 1.86 - 1.78 (m, 2H), 1.61 - 1.49 (m, 2H), 1.22 (d, 6H).
Preparation 67: 4-(5-Hydroxymethyl-[l,2,4]oxadiazol-3-yl)piperidine-l-carboxylic acid isopropyl ester
Figure imgf000056_0002
To a suspension of glycolic acid (l .OOg, 13.15mmol) in DCM (15mL) was added carbonyldiimidazole (2.13g, 13.15mmol) and the reaction was stirred at r.t. for 16 h. To the mixture was added 4-(N-hydroxycarbamimidoyl)piperidine-l-carboxylic acid isopropyl ester (Preparation 66, 3.01g, 13.15mmol) and stirring continued for 3 h. The reaction was then heated to 35°C for 2 h before stirring at r.t. for 16 h. The reaction was heated to 35°C for a further 16 h before concentrating the reaction mixture in vacuo. The crude residue was partitioned between EtOAc (150mL) and water (lOOmL). The organic layer was separated, washed with brine, and dried (MgS04). Removal of the solvent in vacuo afforded an oil, which was dissolved in toluene and heated to 105°C for 16 h. Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 40:60) afforded the title compound: RT = 2.67 min; mlz (ES+) = 270.1 [M+ H]+. Preparation 68: 4-[5-(2-Chloropyrimidin-5-yloxymethyl)-[l,2,4]oxadiazol-3- yl]piperidine-l-carboxylic acid iso ropyl ester
Figure imgf000057_0001
To a solution of 4-(5-hydroxyrnethyl-[l,2,4]oxadiazol-3-yl)piperidine-l-carboxylic acid isopropyl ester (Preparation 67, 103mg, 0.38mmol) in THF (5mL), in an oven-dried flask, under argon, was added 2-chloro-pyrimidin-5-ol (50mg, 0.38mmol), followed by triphenylphosphine (150mg, 0.57mmol), and the mixture was cooled to 0°C. DIAD (112μΙ,, 0.57mmol) was added, dropwise, and the resulting mixture was stirred at r.t. for 2.5 h. The reaction solvent was removed in vacuo, and the residue was re-dissolved in EtOAc (lOOmL). The solution was washed with water (50mL), then brine, and dried (MgS04), before removal of the solvent in vacuo. IH was added, followed by a minimal volume of Et20, and a precipitate formed. The solvent was decanted and concentrated in vacuo. Purification of the resulting residue by column chromatography (IH:EtOAc, 50:50, 40:60) afforded the title compound: RT = 3.43 min; mlz (ES+) = 382.1 [M+ H]+.
Preparation 69: 4-(5-{2-[(3R,4R)-3-teri-Butoxycarbonylamino-4-(2,5- difluorophenyl)piperidin-l-yl]pyrimidin-5-yloxymethyl}-[l,2,4]oxadiazol-3- yl)piperidine-l-carboxylic acid isopropyl ester
Figure imgf000057_0002
A combination of 4-[5-(2-chloropyrimidin-5-yloxymethyl)-[l,2,4]oxadiazol-3- yl]piperidine-l-carboxylic acid isopropyl ester (Preparation 68, 38mg, O. lOmmol),
[(3i?,4i?)-4-(2,5-difluorophenyl)piperidin-3-yl]carbamic acid tert-butyl ester (Preparation 9, 31mg, O. lOmmol) and DIPEA (19μΕ, 0.1 lmmol), in tert-butanol (lmL), was heated to 80°C for 40 h. The reaction mixture was partitioned between EtOAc (50mL) and brine (50mL), then the organic layer was separated, dried (MgS04), and the solvent removed in vacuo. The crude residue was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected to afford the title compound: RT = 4.47 min; mlz (ES+) = 658.2[ + H]+.
Preparation 70 : (frans)-3-(9H-Fluoren-9-ylmethoxycarbonylamino)-4-(2- fluorophenyl)pyrrolidine-l-carbox lic acid terf-butyl ester
Figure imgf000058_0001
To a solution of (tra/75)-3-amino-4-(2-fluorophenyl)pyrrolidine-l-carboxylic acid tert- butyl ester (2.00g, 7.13mmol) and triethylamine (1.59mL, 11.40mmol) in a combination of dioxane and water (2: 1, 75mL), cooled to 0°C, was added 9-fluorenylmethyl chloro formate (2.3 lg, 8.92mmol), then the reaction was allowed to reach r.t. before stirring for 16 h. The mixture was diluted with EtOAc, washed with water, 1M HC1, sat. NaHC03 solution, then brine, and dried (MgSC^). Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 90: 10, 80:20, 70:30) afforded the title compound: RT = 4.28 min mlz (ES+) = 503.3 [M+ H]+.
Preparation 71: [(frans)-4-(2-Fluorophenyl)pyrrolidin-3-yl]carbamic acid-9H-fluoren- 9-ylmethyl ester hydrochloride
Figure imgf000058_0002
To a solution of (tra/?5)-3-(9H-fluoren-9-ylmethoxycarbonylamino)-4-(2- fluorophenyl)pyrrolidine-l-carboxylic acid tert-butyl ester (Preparation 70, 1.50g,
2.98mmol) in dioxane (30mL) was added a solution of HC1 in dioxane (4M, 30mL) and the reaction was stirred at r.t. for 16 h, after which time a precipitate had formed. Et20 was added to the mixture until no further precipitation was observed, and the solvent was decanted. The residue was suspended in a further volume of Et20 and stirred for 5 min before decanting the solvent. This process was repeated twice more and the resulting residue was concentrated in vacuo to afford the title compound: RT = 2.82 min mlz (ES ) = 403.1 [M
+ H]+.
Preparation 72: (l-Cyanopiperidin-4-yl)carbamic acid tert-butyl ester
To a solution of piperidin-4-ylcarbamic acid tert-butyl ester (10. Og, 49.9mmol) in DCM (130mL) was added a slurry of NaHC03 (12.6g, 149.8mmol) in water (30mL) and the resulting mixture was cooled to 0°C. A solution of cyanogen bromide (6.4g, 59.9mmol) in DCM (15mL) was added, dropwise, over 10 min then the mixture was warmed to r.t and stirred for 3 h. The reaction mixture was diluted with water, then the layers were separated. The aqueous phase was extracted with DCM, then the organic fractions were combined, washed with sat. NaHC03 solution, then brine, and dried (MgS04). Removal of the solvent in vacuo afforded the title compound: RT = 2.93 min; mlz (ES ) = 226.1 [M+ H]+.
Preparation 73 : l-(3-Isopropyl- [ 1 ,2,4 oxadiazol-5-yl)piperidin-4-ylamine
Figure imgf000059_0001
To a solution of (l-cyanopiperidin-4-yl)carbamic acid tert-butyl ester (Preparation 72, 4.04g, 17.9mmol) and N-hydroxyisobutyramidine (2.20g, 21.5mmol) in EtOH (50mL) was added a solution of Zinc(II)chloride (2.93g, 21.5mmol) in EtOH (30mL), and the resulting solution was stirred at RT for 2.25h. Concentrated HC1 (4.58mL, 53.8mmol) was then added and the reaction heated to 50°C for 16 h. The solvent was removed in vacuo and the resulting residue was triturated with MeCN. The white solid was collected by filtration and washed with EtOAc (x 3), then dissolved in water and basified to pH12 with 2M NaOH solution. EtOAc was added and the resulting emulsion was filtered through celite. The aqueous phase was extracted with EtOAc (x 4), then the organic fractions were combined, washed with brine, dried (MgS04), and the solvent removed in vacuo to afford the title compound: RT = 1.71 min; mlz (ES+) = 211.1 [M+ H]+.
Preparation 74: (2-Chloropyrimidin-5-yl)methanol
A solution of 2-chloropyrimidine-5-carboxylic acid methyl ester (l .Og, 5.8mmol) in THF (30mL), under argon, was cooled to -78°C. To the solution was added a solution of DIBAL-H in DCM (1.0M, 20.3mL, 20.3mmol), slowly over 40min. The reaction was allowed to warm to r. t. before continuing to stir for a further 16 h. A solution of sat. sodium potassium tartrate (lOOmL) was slowly added, followed by EtOAc, and the mixture was stirred vigorously for 2 h. The organic phase was separated then a further portion of EtOAc was added to the aquoues phase before stirring vigorously for lh. The organic phase was removed and the aqueous phase was washed with a mixture of EtOAc and THF (1 :1). All organic fractions were combined and washed with sat. sodium potassium tartrate solution, water, then brine, and dried (MgS04). The solvent was removed in vacuo to afford the title compound: RT = 1.62 min; mlz (ES+) = 145.0 [M+ H]+.
Preparation 75: [(3R,4S)-4-(2,5-Difluorophenyl)-l-(5-hydroxymethylpyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-but l ester
Figure imgf000060_0001
To a dry solution of (2-chloropyrimidin-5-yl)methanol (Preparation 74, 253mg, 1.75mmol) and [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 574mg, 1.93mmol) in DMSO (1.6mL) was added DBU (262μΕ,
1.75mmol) and the reaction was heated to 70°C for 21 h. The mixture was diluted with water and extracted with EtOAc (x 2). The organic fractions were combined, washed with sat. NaHC03 solution, then brine, and dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (DCM:MeOH, 97:3) afforded the title compound: RT = 3.23 min; mlz (ES+) = 407.1 [M+ H]+.
Preparation 76: [(3R,4S)-4-(2,5-Difluorophenyl)-l-(5-formylpyrimidin-2-yl)pyrrolidin- 3-yl]carbamic acid tert-butyl ester
Figure imgf000060_0002
To a solution of [(3i?,45)-4-(2,5-difluorophenyl)-l-(5-hydroxymethylpyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 75, 413mg, 1.02mmol) and pyridine (243 μί, 3.00mmol) in DCM (16mL) at 0°C was added Dess-Martin periodinane (517mg, 1.22mmol), and the resulting mixture was stirred at r.t. for 16 h. The solvent was removed in vacuo, then the remaining residue was dissolved in EtOAc, washed with 2M NaOH solution (x 6) then brine, and dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (HLEtOAc, 1 : 1) afforded the title compound: RT = 3.73 min; mlz (ES+) = 405.1 [M+ H]+.
Preparation 77: [(3R,45)-4-(2,5-Difluorophenyl)-l-(5-{[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)piperidin-4-ylamino]methyl}pyrimidin-2-yl)pyrrolidin-3-yl]carbamic acid tert- butyl ester
Figure imgf000061_0001
To a solution of [(3i?,45)-4-(2,5-difluorophenyl)-l-(5-formylpyrimidin-2-yl)pyrrolidin- 3-yl]carbamic acid tert-butyl ester (Preparation 76, lOlmg, 0.25mmol) and l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-ylamine (Preparation 73, 63mg, 0.30mmol) in DCE (3mL) was added oven dried molecular sieves (550mg), and the reaction mixture was heated to 100°C for 48 h. Further DCE (5mL) was added, followed by sodium
triacetoxyborohydride (85mg, 0.40mmol), and the mixture was stirred at r.t. for 96 h. The reaction mixture was filtered through celite, washing with DCM, then the combined organics were washed with water, dried (MgS04), and the solvent removed in vacuo. Purification by column chromatography (EtOAc:MeOH, 100:0, 90: 10) afforded the title compound. LCMS: RT = 2.87 min; mlz (ES+) = 599.4 [M+ H]+.
Preparation 78: {(3R,45)-4-(2,5-Difluorophenyl)-l-[5-({[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)piperidin-4-yl] methylamino} methyl)pyrimidin-2-yl] pyr rolidin-3-yl} carbamic acid terf-butyl ester
Figure imgf000061_0002
A combination of [(3i?,4S)-4-(2,5-difluorophenyl)-l-(5-{[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-ylamino]methyl}pyrimidin-2-yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 77, 75mg, 0.12mmol), formaldehyde (4mg, 0.14mmol) and sodium triacetoxyborohydride (37mg, 0.18mmol) in DCE (2mL), under argon, was stirred at r.t. for 66 h. The solvent was removed in vacuo and the resulting residue was dissolved in EtOAc, washed with 2M NaOH solution, then brine, and dried (MgS04).
Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 95:5) afforded the title compound: RT = 2.93 min; m/z (ES+) = 612.7 [M+ H]+.
Preparation 79 : 1- [3-(Pr opan-2-yl)- 1 ,2 4-oxadiazol-5-yl] piperidine-4-carbaldehyde
Figure imgf000062_0001
To a solution [(l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]methanol
(Preparation 1, 5.44g, 24.13mmol) in DCM (150mL), cooled to 0°C, was added dess-martin periodinane (12.28g, 28.95mmol), portionwise over 5min. The reaction mixture was warmed to r.t. and stirred for 2 h. The solvent was removed in vacuo and the resulting residue dissolved in EtOAc. The solution was washed with 2M NaOH solution (x 7), then brine, and dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 60:40) afforded the title compound: RT = 2.37 min; m/z (ES+) = 224.1 [M +
H]+.
Preparation 80: [(3R,4S)-4-(2,5-Difluorophenyl)-l-(5-nitropyrimidin-2-yl)pyrrolidin-3- yl]carbamic acid tert-butyl ester
Figure imgf000062_0002
To a solution of 2-chloro-5-nitropyrimidine (2.00g, 12.5mmol) and [(3R,4S)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 4.1 lg,
13.8mmol) in anhydrous DMSO (16mL), under argon, was added DBU (1.87mL, 12.5mmol) and the mixture was heated to 60°C for 16 h. Upon cooling, the mixture was poured into water (150mL) and the resulting scum was extracted into EtOAc (lOOmL then 50mL). The combined organic fractions were washed with sat. NaHC03 solution (50mL), then brine (50mL) and dried (MgS04), before removal of the solvent in vacuo. Recrystallisation from EtOAc:IH (2:3) (x 2), followed by recrystallisation from EtOH, afforded the title compound: RT = 4.12 min; mlz (ES+) = 422.1 [M+ H]+.
Preparation 81 : [(3R,4S)-l-(5-Aminopyrimidin-2-yl)-4-(2,5-difluorophenyl)pyrrolidin- 3-yl]carbamic acid tert-butyl ester
Figure imgf000063_0001
A solution of [(3i?,45)-4-(2,5-difluorophenyl)-l-(5-nitropyrimidin-2-yl)pyrrolidin-3- yljcarbamic acid tert-butyl ester (Preparation 80, 1.04g, 2.47mmol) in a combination of THF (20mL) and MeOH (30mL) was passed through an H-Cube apparatus (10% pd/C, atmospheric pressure, r.t.) at a flow rate of ImL per min. The solvent was removed in vacuo to afford the title compound: RT = 2.84 min; mlz (ES+) = 391.2 [M+ H]+. Preparation 82: [(3R,45)-4-(2,5-Difluorophenyl)-l-(5-{[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)piperidin-4-ylmethyl] amino}pyrimidin-2-yl)pyrrolidin-3-yl] carbamic acid tert- butyl ester
Figure imgf000063_0002
To a solution of [(3 ?,45)-l-(5-aminopyrimidin-2-yl)-4-(2,5- difluorophenyl)pyrrolidin-3-yl] carbamic acid tert-butyl ester (Preparation 81, 300mg, 0.77mmol) and l-[3-(propan-2-yl)-l,2,4-oxadiazol-5-yl]piperidine-4-carbaldehyde
(Preparation 79, 220mg, 0.99mmol) in DCE (20mL), under argon, was added sodium triacetoxyborohydride (276mg, 1.30mmol), followed by AcOH (199μΕ, 3.50mmol). After stirring at r.t for 16 h, the reaction mixture was washed with sat. NaHC03 solution (2 x 20mL). The organic phase was dried (MgS04) and the solvent removed in vacuo.
Purification by column chromatography (IH:EtOAc, 30:70) followed by recrystallisation from EtOAc/IH afforded the title compound: RT = 3.87 min; mlz (ES ) = 599.4 [M+ H] .
Preparation 83 : l-(3-Isopropyl- [ 1 ,2,4] oxadiazol-5-yl)piperidin-4-ol
To a solution of 4-hydroxypiperidine-l-carbonitrile (1.08g, 8.6mmol) and N- hydroxyisobutyramidine (1.05g, 10.3mmol) in EtOH (20mL) was added Zinc(II)chloride (1.40g, 10.3mmol) in EtOH (15mL), and the mixture was stirred at r.t. for 2 h. Cone. HC1 (4.19mL, 49.2mmol) was added, and the resulting mixture was heated to 50°C for 16 h. The solvent was removed in vacuo and water was added to the residue before neutralising with solid NaHC03. The mixture was filtered, extracted with EtOAc (x 3), and the combined organic fractions were washed with brine, then dried (MgS04). Removal of the solvent in vacuo and purification by column chromotography (EtOAc) afforded the title compound: RT = 2.44 min; mlz (ES+) = 212.1 [M+ H]+.
Preparation 84: 2-Chloro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yloxym ethyl] pyrimidine
Figure imgf000064_0001
To a dry solution of l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-ol
(Preparation 83, 432mg, 2.04mmol) in THF (4mL) was added NaH (60% suspension in mineral oil, 98mg, 2.44mmol), and the mixture was stirred at r.t. for 25 min. To the mixture was added a solution of 2-chloro-5-chloromethylpyrimidine (332mg, 2.04mmol) in THF (3mL) and stirring continued at r.t. for 16 h. The reaction was heated to 30°C for 1.5 h then a further portion of NaH (49mg, 1.02mmol) was added, along with TBAI (7mg, 0.02mmol). The reaction was then heated to 35°C for 16 h.
The solvent was removed in vacuo and the residue was dissolved in EtOAc, washed with water, then brine, and dried (MgS04). Removal of the solvent in vacuo and purification by Preparative HPLC afforded the title compound: RT = 3.27 min; mlz (ES ) = 338.2 [M +
H]+. Preparation 85: ((3R,4S)-4-(2,5-Difluorophenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yloxymethyl] pyrimidin-2-yl}pyrr olidin-3-yl)carbamic acid tert-butyl ester
Figure imgf000065_0001
To a solution of 2-chloro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yloxymethyljpyrimidine (Preparation 84, 24mg, 0.07mmol) and [(3i?,45)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 23mg, 0.08mmol) in DMSO (0.05mL) was added DBU (1 Ι μΙ,, 0.07mmol), and the reaction was heated to 70°C for 16 h. The mixture was diluted with EtOAc, washed with water (x 2), then brine, and dried (MgS04). Solvent was removed in vacuo then the residue was purified by column chromotography (IH:EtOAc, 3:7). The resulting product was passed down an SCX cartridge, eluting with EtOH then NH4OH in MeOH, and the basic fraction collected and concentrated. Removal of the solvent in vacuo afforded the title compound: RT = 4.15 min; m/z (ES+) = 600.3 [M+ H]
Preparation 86: 5-Benzyloxy-2-chloropyrimidine
A solution of 2-chloropyrimidin-5-ol (70% purity, 7.5g, 40mmol) in DMF (15mL, 190mmol), under argon, was cooled to 0°C. Cesium Carbonate (14. Og, 43mmol) was added, portionwise, and the mixture was stirred for 5min at 0°C then lOmin at r.t.. The mixture was cooled back back down to 0°C and benzyl bromide (5.1mL, 43mmol) was added, portionwise. The reaction was stirred at 0°C for 15min, then allowed to warm to r.t. and stirred for a further 90min. The solvent was removed in vacuo and the residue partitoned between EtOAc and water. The organic phase was separated, washed with water:brine(l : 1), dried (MgS04), and the solvent removed in vacuo. Trituration from a combination of Et20 and IH, and further trituration of the motherliquer after concentration in vacuo, afforded the title compound in two crops: RT = 3.54 min; m/z (ES ) = 221.0 [M+ H]+. Preparation 87: [(3R,4S)-l-(5-Benzyloxypyrimidin-2-yl)-4-(2,4,5- trifluorophenyl)pyrrolidin-3-yl carbamic acid tert-but l ester
Figure imgf000066_0001
A combination of 5-benzyloxy-2-chloropyrimidine (Preparation 86, 4.4g, 20mmol), [(3i?,45)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 6.0g, 19mmol) and DIPEA (4.4mL, 25mmol) in MeCN (56mL, 1 lOOmmol) was heated in a microwave reactor at 150°C for 4 x 60 min. The solvent was removed in vacuo and the resulting residue partitioned between DCM and water. The organic phase was separated and the aqueous layer was washed with DCM. Organic fractions were combined, dried (MgS04), and the solvent removed in vacuo. The crude material was triturated from Et20. The precipitate was filtered, washing with Et20 (x 2) and Et20/IH (x 2), and dried under vacuum to afford the title compound: RT = 4.50 min; m/z (ES+) = 501.1 [M+ H]+.
Preparation 88: [(3R,4S)-4-(2,4,5-Trifluorophenyl)-l-(5-hydroxypyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid ter -buty\ ester
Figure imgf000066_0002
To a combination of [(3 ?,45)-l-(5-benzyloxypyrimidin-2-yl)-4-(2,4,5- trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 87, 4.5g, 9.0mmol) and 10% Pd/C (O.lg, O. lmmol), purged with argon, was added EtOH (lOOmL) and the reaction was placed under an atmosphere of hydrogen for 60 min. The mixture was filtered through celite, washing with EtOH (2 x 50mL) and the solvent removed in vacuo. The crude material was triturated with Et20, filtered, then triturated with DCM, filtered and dried under vacuum to afford the title compound: RT = 3.53 min; m/z (ES ) = 411.3 [M +
H]+. Preparation 89: [l-(5-Chloropyrimidin-2- l)-4-methoxypiperidin-4-yl] methanol
Figure imgf000067_0001
2,5-Dichloropyrimidine (471mg, 3.2mmol) and triethylamine (1030μί, 7.4mmol) were added to a solution of (4-methoxypiperidin-4-yl)methanol hydrochloride (1 :1) (400mg, 2.0mmol) in t-BuOH (3mL), and the reaction was heated in a microwave reactor at 80°C for 30min. The mixture was partitioned between DCM and water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and concentrated in vacuo. Purification by column chromatography (IH:EtOAc, 100:0 - 0: 100) afforded the title compound: RT = 2.80 min; mlz (ES+) = 258.0 [M+ H]+.
Preparation 90: [(3R,4S)-l-{5-[l-(5-Chloropyrimidin-2-yl)-4-methoxypiperidin-4- ylmethoxy]pyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl] carbamic acid tert- butyl ester
Figure imgf000067_0002
To a solution of [(3i?,45)-4-(2,4,5-trifluorophenyl)-l-(5-hydroxypyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 88, 50mg, O. lmmol) in THF (lmL) was added PS-triphenylphosphine (1.52 mmol/g loading; 120mg, 0.18mmol) and the mixture was allowed to stand at r.t. for 5 min. A solution of TBAD (31mg, 0.13mmol) in THF (0.5mL) was added and the mixture was stirred at r.t. for 5 min. A solution of [l-(5- chloropyrimidin-2-yl)-4-methoxypiperidin-4-yl]methanol (Preparation 89, 31mg,
0.12mmol) in THF (0.5mL) was added and the mixture stirred at r.t. for 2h. Further portions of TBAD (31mg, 0.13mmol) and PS-triphenylphosphine (1.52 mmol/g loading; 120mg, 0.18mmol) were added and the reaction was heated to 40°C for 2 h, before being stirred at r.t. for 60 h. The reaction mixture was filtered and the resin washed with DCM and methanol. The filtrate was concentrated in vacuo before being purified by preparative HPLC. Removal of the solvent in vacuo afforded the title compound: RT = 4.80 min; mlz (ES ) = 650.5 [ + H]+. Preparation 91 : [(3S,4S)-l-Benzyl-4-(5-bromo-4,4-difluoropentanoylamino)pyrrolidin- 3-yl]carbamic acid tert-butyl ester
Figure imgf000068_0001
A combination of 5-bromo-4,4-difluoropentanoic acid (containing 25% 5-chloro-4,4- difluoropentanoic acid, 3.46g, 16.82mmol), EDCI (3.87g, 20.18mmol), HOAT (2.75g,
20.18mmol) and triethylamine (7.00mL, 50.45mmol) in DMF (35mL) was stirred at r.t. for 1 h. To the reaction was added a solution of ((35',45)-4-amino-l-benzylpyrrolidin-3- yl)carbamic acid tert-butyl ester (Preparation 18, 4.90g, 16.82mmol) in DMF (35mL) and the reaction was heated to 50°C for 16h. DMF was removed in vacuo and the crude residue was taken into water. The mixture was extracted with EtOAc (x 3) then the organic fractions were combined, washed with brine (1 : 1) and dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (DCM:MeOH:NH4OH, 99: 1 :0.1, 96:4:0.1) afforded the title compound: RT = 2.92 min; m/z (ES+) = 490.1, 492.1 [M+ H]+. Preparation 92: [(3S,4S)-l-Benzyl-4-(5,5-difluoro-2-oxopiperidin-l-yl)pyrrolidin-3- yl]carbamic acid tert-butyl ester
Figure imgf000068_0002
A solution of [(35,,45)-l-benzyl-4-(5-bromo-4,4-difluoropentanoylamino) pyrrolidin- 3-yl]carbamic acid tert-butyl ester (containing 25% [(35',45)-l-benzyl-4-(5-chloro-4,4- difluoropentanoylamino) pyrrolidin-3-yl]carbamic acid tert-butyl ester, Preparation 91, 5.60g, 11.7mmol) in DMF (30mL) was cooled to 0°C. Sodium hydride (60%> mineral oil, 0.94g, 23.4mmol) was added and the reaction allowed to stir, gradually warming to r.t. over 2 h. The DMF was removed in vacuo, azeotroping with toluene (x 3) then the crude residue was partitioned between DCM and water. The aqueous phase was separated and extracted with DCM, then the organic layers were combined, washed with brine and dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (DCM:MeOH:NH4OH, 99: 1 :0.1, 98:2:0.2 then IH:EtOAc, 50:50, 0: 100) afforded the title compound. LCMS Method 4: RT = 2.90 min; mlz (ES+) = 410.2 [M+ H]+.
Preparation 93 : [(3S,4S)-4-(5,5-Difluoro-2-oxopiperidin-l-yl)pyrrolidin-3-yl] carbamic acid tert-buty\ ester
Figure imgf000069_0001
The title compound was prepared from [(35',45)-l-benzyl-4-(5,5-difluoro-2- oxopiperidin-l-yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 92) employing the procedure outlined in Preparation 20: RT = 2.04 min; mlz (ES+) = 320.2 [M+ H]+.
Preparation 94: 2-bromo-5-{(S)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl] ethoxy} pyridine
Figure imgf000069_0002
To a solution of (i?)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethanol (Preparation 62, 1.02g, 4.24mmol) in THF (12.5mL), under argon, was added
triphenylphosphine (1.66g, 6.32mmol) and the reaction was cooled to 0°C. TBAD (1.46g, 6.32mmol) was added and the reaction was allowed to warm to r.t. before being stirred for 20 h. The reaction solvent was reduced to a volume of 5mL, then purification by column chromatography (TEA doped Si02, Heptane:EtOAc, 4: 1, 3:1) afforded the title compound. LCMS method 5: RT = 14.07 min; mlz (ES+) = 395.0, 397.0 [M+ H]+.
Preparation 95 : 2-Bromo-5-{(5)- 1- [ l-(3-isopropyl- [ 1 ,2,4] oxadiazol-5-yl)piperidin-4- yl] ethoxy} pyrazine
Figure imgf000069_0003
To a solution of (i?)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethanol (Preparation 62, 1.10g, 4.58mmol) in THF (14mL), under argon, was added triphenylphosphine (1.80g, 6.89mmol) and the reaction was cooled to 0°C. DIAD (1.35mL, 6.86mmol) was added, in two portions, and the reaction was allowed to warm to r.t. before being stirred for 16 h. The reaction solvent was reduced in vacuo and the thick slurry was purified by column chromatography (Heptane:EtOAc, 4: 1, 3: 1 then TEA doped Si02, Heptane:EtOAc, 4: 1, 3:1). The purification method was repeated to afford the title compound. LCMS method 5: RT = 14.99 min; mlz (ES+) = 396.0, 398.0 [M+ H]+.
Preparation 96: (R)-l-Pyridin-4-yl-ethanol
To a solution of diphenyl-(5)-pyrrolidin-2-ylmethanol (10.5g, 41.3mmol) in THF (800mL) was added trimethoxyborane (5.52mL, 49.5mmol) and the reaction was stirred at r.t. for 1 h. The mixture was cooled to 0°C and borane dimethylsulfide (78mL, 825.5mmol) was added, followed by a solution of 4-acetylpyridine (50g, 410.7mmol) in THF (200mL), over 1 h. The reaction was stirred for a further 1 h before being quenched with 2M HC1. After stirring for 10 min the reaction mixture was basified with sat. NaHCC"3 solution. The precipitate that formed was filtered, and the remaining filtrate was extracted with EtOAc (x 10). The organic fractions were combined, dried (MgS04) and the solvent removed in vacuo. Purification by column chromatography (DCM:MeOH, 9: 1) afforded the title compound: 1H NMR δΗ (300MHz , CDC13): 8.49 (s, 2H), 7.30 (s, 1H), 4.93 - 4.84 (m, 1H), 3.08 - 2.86 (m, 1H), 1.51 - 1.48 (m, 3H).
Preparation 97: (R)-l-Piperidin-4- lethanol acetate
Figure imgf000070_0001
To a solution of (i?)-l-pyridin-4-yl-ethanol (Preparation 96, 31.6g, 0.29mol) in MeOH (650mL) was added AcOH (16.2mL), and the vessel was flushed with argon.
Platinum oxide (4.0g) was added and the reaction was stirred under an atmosphere of hydrogen at 50atm for 18 h. The mixture was filtered through celite, washing with MeOH, then the filtrate was concentrated in vacuo. The residue was triturated with EtOAc, then filtered to afford the title compound: 1H NMR δΗ (400MHz , CDC13): 5.82 - 5.46 (m, 3H), 3.65 - 3.60 (m, 1H), 3.38 - 3.30 (m, 2H), 2.77 - 2.65 (m, 2H), 2.00 - 1.92 (m, 4H), 1.76 - 1.69 (m, 1H), 1.65 - 1.40 (m, 3H), 1.20 - 1.16 (m, 3H). Preparation 98: 4-((R)-l-hydroxyeth l)piperidine-l-carbonitrile
Figure imgf000071_0001
To a solution of (i?)-l-piperidin-4-ylethanol acetate (Preparation 97, 60. Og, 0.32mol) in DCM (175mL) was added a slurry of NaHC03 (106.5g) in water (175mL), and the mixture was cooled to 0°C. A solution of cyanogen bromide in DCM (3M, 116.0mL,
0.35mol) was added, drop-wise, over 50 min, then the reaction was warmed to r.t. and stirred for 2 h. The mixture was partitioned between DCM and water, and the organic phase was separated. The aqueous phase was extracted with DCM, then organic fractions were combined, washed with sat. NaHC03 solution, and dried (MgS04). The solvent was removed in vacuo to afford the title compound: 1H NMR δΗ (400MHz , CDC13): 3.64 - 3.53 (m, 1H), 3.50 - 3.40 (m, 2H), 3.05 - 2.90 (m, 2H), 1.92 - 1.80 (m, 1H), 1.72 - 1.30 (m, 4H), 1.20 - 1.11 (m, 3H).
Preparation 99: N-Hydroxypropionamidine
To a solution of hydroxylamine (15mL, 0.45mol) in IMS (210mL) was added propionitrile (38mL, 0.54mol) and the reaction was heated to 100°C for 16 h. The reaction solvent was concentrated in vacuo to afford the title compound: 1H NMR δΗ (400MHz , CDC13): 4.75 - 4.38 (s (br), 2H), 2.20 - 2.09 (m, 2H), 1.19 - 1.06 (m, 3H). Preparation 100: (R)-l-[l-(3-Ethyl- l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethanol
Figure imgf000071_0002
4-((i?)-l-hydroxyethyl)piperidine-l-carbonitrile (Preparation 98, 28.4g, 183mmol) was combined with N-hydroxypropionamidine (Preparation 99, 19.4g, 220mol) in EtOH (570mL). To the mixture was added a solution of zinc(II)chloride (309g, 220mol) in EtOH (40mL) over 15 min, and the reaction was stirred at r.t. for 2 h. To the mixture was then added concentrated HC1 (25mL), over 5 min, and the reaction was heated to reflux for 4 h. The reaction solvent was concentrated in vacuo, and water was added. The mixture was brought the pH7 with NaHC03 and extracted with EtOAc, then the organic fraction was dried (MgS04), and the solvent removed in vacuo. Purification by column chromatography
(DCM:MeOH, 95:5) afforded the title compound. LCMS Method 3: RT
(ES+) = 226.1 [Μ+ ηγ. Preparation 101: Methanesulfonic acid (R)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl] ethyl ester
Figure imgf000072_0001
To a dry solution of (i?)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethanol (Preparation 100, 2.0g, 8.9mmol) in DCM (30mL) was added triethylamine (1.5mL, 10.6mmol) and the mixture was cooled to 0°C. Methanesulfonyl chloride (0.8mL, 9.8mmol) was added by syringe and the reaction was stirred until complete. The reaction mixture was diluted with DCM (50mL), washed with 1M HC1 (x 3) and brine, then dried using a phase separator. Removal of the solvent in vacuo afforded the title compound: RT = 3.02 min; mlz
Figure imgf000072_0002
Preparation 102: 2-Chloro-5-{(5)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl] ethoxy}pyrimidine
Figure imgf000072_0003
The title compound was prepared from methanesulfonic acid (R)-l-[l-(3-ethyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethyl ester (Preparation 101) employing the method outlined in Preparation 29. Purification by column chromatography (IH:EtOAc, 40:60) afforded the title compound: RT = 3.50 min; mlz (ES+) = 338.1 [M+ H]+.
Preparation 103 : l-(3-Isopropyl- [ 1 ,2,4] oxadiazol-5-yl)-4-oxiranylpiperidine
Figure imgf000072_0004
To a solution of trimethylsulfoxonium iodide (1.18g, 5.37mmol) in DMSO (lOmL) was added sodium hydride (0.22g, 5.37mmol). The resulting solution was stirred at r.t. for 30 min before the addition of a solution of l-[3-(propan-2-yl)-l,2,4-oxadiazol-5-yl]piperidine-4- carbaldehyde (Preparation 79, 1.20g, 5.37mmol) in DMSO (8mL), via cannula. The reaction was stirred at r.t. for 16 h before being poured into ice-water (400mL). The mixture was extracted with EtOAc (x 3), and the combined organic fractions were washed with water, then brine, and dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 65:35) afforded the title compound: RT = 2.99 min; mlz (ES+) = 238.2 [M+ H] .
Preparation 104 : 1- [ l-(3-Isopr opyl- [ 1 ,2,4] oxadiazol-5-yl)piperidin-4-yl] -2- methoxyethanol
Figure imgf000073_0001
To a solution of l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-4-oxiranylpiperidine
(Preparation 103, 356mg, 1.50mmol) in anhydrous MeOH (6mL) was added sodium methoxide (85mg, 1.50mmol) and the resulting mixture was stirred under reflux for 16 h. The solvent was removed in vacuo and the resulting residue partitioned between water and EtOAc. The aqueous phase was separated, extracted with EtOAc (x 2), and the combined organic fractions were dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 30:70) afforded the title compound: RT = 2.64 min; m/z
Figure imgf000073_0002
Preparation 105: Methanesulfonic acid l-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl] -2-methox ethyl ester
Figure imgf000073_0003
To a solution of l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]-2- methoxyethanol (Preparation 104, 217mg, 0.8mmol) in DCM (5mL), cooled to 0°C, was added triethylamine (190μΕ, 1.4mmol), followed by methanesulfonyl chloride (81 μΕ, l.Ommol), and the reaction was stirred at 0°C for 2.5 h. The reaction was quenched with water, and the organic phase was separated, washed with sat. NH4C1 solution, then brine, and dried (MgS04). Removal of the solvent in vacuo afforded the title compound: RT =
3.24 min; m/z (ES+) = 348.1 [M+ H]+. Preparation 106: [(3R,4S)-l-(5-Benzyloxypyrimidin-2-yl)-4-(2,5- difluorophenyl)pyrrolidin-3- l]carbamic acid tert-butyl ester
Figure imgf000074_0001
A combination of 5-benzyloxy-2-chloropyrimidine (Preparation 86, 350mg, 1.6mmol), [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 570g, 1.9mmol) and DIPEA (550μΕ, 3.2mmol) in MeCN (lOmL) was heated in a microwave reactor at 160°C for 30 min. The solvent was removed in vacuo and the resulting residue was purified by column chromatography (IH:EtOAc, 100:0, 75:25) to afford the title compound: RT = 4.42 min; m/z (ES+) = 483.2 [M+ H]+.
Preparation 107: [(3R,4S)-4-(2,5-Difluorophenyl)-l-(5-hydroxypyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-but l ester
Figure imgf000074_0002
A combination of [(3i?,45)-l-(5-benzyloxypyrimidin-2-yl)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 106, 300mg, 0.6mmol) and palladium on carbon (10% wt., 66mg, 0.06mmol) in EtOH (30mL) was purged with argon and then placed under an atmosphere of hydrogen for 60min. The mixture was filtered through celite and the solvent removed in vacuo to afford the title compound: RT = 3.35 min; m/z (ES+) = 393.2 [M+ H]+.
Preparation 108: [(3R,45)-4-(2,5-Difluorophenyl)-l-(5-{l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yl]-2-methoxyethoxy}pyrimidin-2-yl)pyrrolidin-3- yl]carbamic acid tert-butyl ester
Figure imgf000074_0003
To a solution of methanesulfonic acid l-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl]-2-methoxyethyl ester (Preparation 105, 80.5mg, 0.23mmol) and [(3R,4S)- 4-(2,5-difluorophenyl)-l-(5-hydroxypyrimidin-2-yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 107, 82.7mg, 0.21mmol) in DMA (2.0mL) was added CsF (35.2mg, 0.23mmol), and the reaction was stirred at 65°C for 120 h. A further portion of CsF (35.0mg, 0.23mmol) was added, along with TBAI (15.6mg, 0.04mmol), and the reaction was heated to 75°C for 16 h. Further portions of CsF (35mg, 0.23mmol) and methanesulfonic acid l-[l-(3- isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]-2-methoxyethyl ester (Preparation 105, 40mg, 0.12mmol) in DMA (0.4mL) were added and the reaction continued heating at 75°C for 16 h. Further CsF (35mg, 0.23mmol) was added and the reaction was heated to 85°C for 120 h. On cooling, the reaction mixture was diluted with EtOAc, washed with water (x 3), then brine, and dried (MgS04), before removal of the solvent in vacuo. Purification by column chromatography (IH:EtOAc, (70:30, 70:35, 60:40, 50:50, 0: 100) and further purification by preparative HPLC afforded the title compound: RT = 4.33 min; m/z (ES ) =
Figure imgf000075_0001
Preparation 109: [ l-(5-Ethyl-2-meth l-2H- [ 1 ,2,4] triazol-3-yl)piperidin-4-yl] methanol
Figure imgf000075_0002
To a solution of [l-(5-ethyl-2H-[l,2,4]triazol-3-yl)piperidin-4-yl]methanol (510mg, 2.4mmol) in MeOH (lOmL) was added KOH (140mg, 2.4mmol), portion-wise, and the reaction was stirred at r.t. for 1 h. Methyl iodide (ΠΟμί, 2.7mmol) was added, drop-wise, and the reaction mixture was heated to 60°C for 16 h. The mixture was cooled, a further portion of methyl iodide (Πμί, O.leq) was added, and the reaction was heated to 60°C for 30 min. The mixture was cooled again, another portion of methyl iodide (35μί, 0.2eq.) was added, and the reaction was heated to 60°C for 60 min. The mixture was cooled once more, a further portion of methyl iodide (35μί, 0.2eq) was added, followed by KOH (70mg, 0.5eq), and the reaction was heated to 60°C for 60 min. The mixture was partitioned between DCM and water. The aqueous phase was separated, extracted with DCM, then the combined organic fractions were dried (MgS04) and concentrated in vacuo to afford an oil. The aqueous layer was then extracted with ethyl acetate (x 3). The combined organic fractions were dried (MgS04) and the solvent removed in vacuo to afford an oil.
A small aliquot of the aqueous phase (3mL) was acidified with citric acid, extracted with DCM (5mL), filtered through a phase separator, and the solvent removed in vacuo to afford an oil. The remaining aqueous phase was concentrated in vacuo, and the residue was dissolved in a solution of DCM and MeOH (DCM:MeOH, 95:5). The mixture was passed through a silica cartridge and desired fractions concentrated in vacuo to afford an oil. All oil products were combined and dissolved in MeOH. Purification by preparative HPLC (basic method) afforded the title compound: RT = 1.90 min; mlz (ES+) = 225.2 [M+ H]+.
Preparation 110: [ l-(3-Ethyl- [1 ,2,4] triazolo [4,3-c] pyrimidin-7-yl)piperidin-4- yl] methanol
Figure imgf000076_0001
A combination of 7-chloro-3-ethyl-[l,2,4]triazolo[4,3-c]pyrimidine (50mg, 0.3mmol) and 4-(hydroxymethyl)piperidine (1 lOmg, l .Ommol) in NMP (250μί) was heated in a microwave reactor at 100°C for 15min. The reaction mixture was diluted with DCM and washed with water, before filtering through a phase separator. The organic layer was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. Removal of the solvent in vacuo afforded the title compound: RT = 2.09 min; mlz (ES+) = 262.2 [M+ H]+.
Preparation 111: [l-(3-Isopropyl-[l 2,4] oxadiazol-5-yl)piperidin-3-yl] methanol
Figure imgf000076_0002
A combination of 3-isopropyl-5-trichloromethyl-[l,2,4]oxadiazole (600mg,
2.61mmol) and 3-piperidinemethanol (137mg, 3.90mmol) was heated in a microwave reactor at 80°C for 60 min. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The material was then passed down an STMAd cartridge, eluting with a mixture of DCM and MeOH, and the filtrate was concentrated in vacuo to afford the title compound: RT = 2.65 min; mlz (ES+) = 226.1 [M+ H]+. Preparation 112: (3R,4S)-4-(2,5-Difluoro henyl)pyrrolidin-3-ylamine
Figure imgf000077_0001
To a solution of [(3 ?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert- butyl ester (Preparation 48, 2.5g, 8.4mmol) in DCM (25mL) was added TFA (5mL) and the reaction was stirred at r.t. for 3 h. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected. Removal of the solvent in vacuo afforded the title compound: 1H NMR δΗ (400MHz, CDCI3): 7.04 - 6.95 (m, 2H), 6.92 - 6.85 (m, 1H), 3.57 - 3.49 (m, 2H), 3.37 - 3.31 (m, 1H), 3.15 - 3.07 (m, 1H), 3.04 - 2.98 (m, 1H), 2.82 - 2.75 (m, 1H).
Preparation 113: 4-((R)-l-Hydroxy thyl)piperidine-l-carboxylic acid terf-butyl ester
Figure imgf000077_0002
To a solution of ( ?)-l-piperidin-4-ylethanol acetate (Preparation 97, 20g, 69mmol) in 1,4-dioxane (150mL) was added a solution of Na2C03 (28g, 265mmol) in water (lOOmL) and the mixture was cooled to 0°C. Di-tert-butyldicarbonate (24g, 11 lmmol) was added portion- wise, over 10 min, and the reaction was allowed to stir at r.t for 22 h. The crude mixture was poured into water and extracted with DCM (x 3) then the combined organic fractions were dried (MgS04), and the solvent removed in vacuo. Purification by column chromatography (DCM:EtOAc, 100:0, 80:20, 60:40, 40:60, 20:80, 0: 100) afforded the title compound: 1H NMR δΗ (300MHz, CDC13): 4.23 - 4.10 (m, 2H), 3.62 - 3.53 (m, 1H), 2.70 - 2.58 (m, 2H), 1.85 - 1.78 (m, 1H), 1.64 - 1.50 (m, 3H), 1.48 - 1.33 (m, 10H), 1.20 - 1.15 (m, 3H).
Preparation 114: 4-((R)-l-Methanesulfonyloxyethyl)piperidine-l-carboxylic acid terf- butyl ester
Figure imgf000077_0003
The title compound was prepared from 4-((i?)-l-hydroxyethyl)piperidine-l-carboxylic acid fert-butyl ester (Preparation 113) employing the procedure outlined in Preparation 101 : H NMR δΗ (400MHz , CDC13) δ = 4.69 - 4.60 (m, 1H), 4.29 - 4.08 (m, 2H), 3.01 (s, 3H), 2.73 - 2.60 (m, 2H), 1.83 - 1.61 (m, 3H), 1.46 (s, 9H), 1.41 (d, J = 6.2Hz, 3H), 1.35 - 1.18 (m, 2H)
Preparation 115: 4- [(5)- l-(2-Chloropyrimidin-5-yloxy)ethyl] piperidine- 1-carboxylic acid tert-buty\ ester
Figure imgf000078_0001
To a solution of 4-((i?)-l-methanesulfonyloxyethyl)piperidine- 1-carboxylic acid tert- butyl ester (Preparation 114, 1.77g, 5.76mmol) and 2-chloropyrimidin-5-ol (0.75g, 5.75mmol) in NMP (20mL) was added potassium carbonate (l .lg, 8.10mmol) and the reaction was heated to 80°C for 16 h. The reaction mixture was partitioned between TBME and water, and the aqueous layer was separated and washed with further TBME. The organic fractions were combined, washed with water, then brine, and dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 100:0 - 70:30) afforded the title compound: 1H NMR δΗ (400MHz, CDC13): 8.26 (s, 2H), 4.25 - 4.19 (m, 3H), 2.74 - 2.64 (m, 2H), 1.90 - 1.65 (m, 3H), 1.47 (s, 9H), 1.39 - 1.25 (m, 5H).
Preparation 116: 4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyrimidin-5-yloxy}eth l)piperidine-l-carboxylic acid terf-butyl ester
Figure imgf000078_0002
To a combination of 4-[(5)-l-(2-chloropyrimidin-5-yloxy)ethyl]piperidine-l- carboxylic acid tert-butyl ester (Preparation 115, 1.98g, 5.79mmol) and (3R,4S)-4-(2,5- difluorophenyl)pyrrolidin-3-ylamine (Preparation 112, (1.67g, 8.42mmol)) in DMSO (1 lmL) was added DBU (1.30mL, 8.70mmol) and the reaction was heated to 80°C in a sealed vial for 64 h. The reaction mixture was partitioned between DCM and water. The organic phase was separated, washed with water, then brine, and dried (MgS04). Removal of the solvent in vacuo afforded the title compound: RT = 2.92 min; mlz (ES ) = 504.2 [M +
H]+. Preparation 117: 4-((S)-l-{2-[(3S,4R)-3-(2,5-Difluorophenyl)-4-(9H-fluoren-9- ylmethoxycarbonylamino)pyrrolidin-l-yl]pyrimidin-5-yloxy}ethyl)piperidine-l- carboxylic acid tert-buty\ ester
Figure imgf000079_0001
A combination of 4-((5)-l-{2-[(3i?,45)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyrimidin-5-yloxy}ethyl)piperidine-l-carboxylic acid tert-butyl ester (Preparation 116, 2.59g, 5.14mmol) 9-fluorenylmethyl chloroformate (1.60g, 6.17mmol) and NaHC03 (1.73g, 20.60mmol) in 1,4-Dioxane (40mL), water (50mL) and toluene (20mL) was stirred at r.t. for 16 h. A further portion of 9-fluorenylmethyl chloroformate (0.16g, 0.62mmol) was added and stirring continued for 30 min. The bi-phasic reaction mixture was separated and the aqueous layer washed with EtOAc. The organic fractions were combined, dried (MgS04) and the solvent removed in vacuo. Purification by column chromatography (IH:EtOAc, 100:0 - 60:40) afforded the title compound: RT = 5.12 min; m/z (ES+) = 726.3 [M+ H]+.
Preparation 118: {(3R,45)-4-(2,5-Difluorophenyl)-l-[5-((S)-l-piperidin-4- ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl}carbamic acid 9H-fluoren-9-ylmethyl ester acetate
Figure imgf000079_0002
To a solution of 4-((5)-l-{2-[(3^,4i?)-3-(2,5-difluorophenyl)-4-(9H-fluoren-9- ylmethoxycarbonylamino)pyrrolidin- 1 -yl]pyrimidin-5 -yloxy } ethyl)piperidine- 1 -carboxylic acid tert-butyl ester (Preparation 117, 2.29g, 3.16mmol) in DCM (38mL) was added TFA (8mL) and the reaction was stirred at r.t. for 16 h. The reaction solvent was removed in vacuo and the residue re-dissolved in DCM. The solution was passed through a PE-AX column, washing with methanol, and the filtrate was concentrated in vacuo to afford the title compound: RT = 3.18 min; m/z (ES+) = 626.2 [M + H]+. Preparation 119: {(3R,45)-4-(2,5-Difluorophenyl)-l-[5-((S)-l-piperidin-4- ylethoxy)pyrimidin-2-yl]pyrrolidin-3- l}carbamic acid 9H-fluoren-9-ylmethyl ester
Figure imgf000080_0001
{(3i?,45)-4-(2,5-Difluorophenyl)-l-[5-((5)-l-piperidin-4-ylethoxy)pyrimidin-2- yl]pyrrolidin-3-yl}carbamic acid 9H-fluoren-9-ylmethyl ester acetate (Preparation 118, 0.8 lg, 1.2mmol) was partitioned between DCM (20mL) and sat. NaHC03 solution (20mL), and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and concentrated in vacuo to afford the title compound: RT = 3.18 min; m/z (ES+) = 626.2 [M + H]+. Preparation 120: 4-((5)-l-{2-[(3R,4S)-3-te^Butoxycarbonylamino-4-(2,5- difluorophenyl)pyrrolidin-l-yl]pyrimidin-5-yloxy}ethyl)piperidine-l-carboxylic acid tert-butyl ester
Figure imgf000080_0002
To a combination of 4-[(5)-l-(2-chloropyrimidin-5-yloxy)ethyl]piperidine-l- carboxylic acid tert-butyl ester (Preparation 115, 190mg, 0.55mmol) and [(3R,4S)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 160mg, 0.55mmol) in DMSO (2mL) was added DBU (124μΕ, 0.83mmol) and the reaction was heated in a sealed vial at 100°C for 16 h. The mixture was partitioned between DCM and water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and concentrated in vacuo. Purification by column chromatography (IH:EtOAc, 80:20, 60:40) afforded the title compound: RT = 4.75 min; mlz (ES+) = 604.3 [M+ H]+. Preparation 121: (3R,45)-4-(2,5-Difluorophenyl)-l-[5-((S)-l-piperidin-4-yl- ethoxy)pyrimidin-2-yl]pyrrolidin-3- lamine
Figure imgf000081_0001
To a solution of 4-((5)-l-{2-[(3i?,45)-3-fert-butoxycarbonylamino-4-(2,5- difluorophenyl)pyrrolidin- 1 -yl]pyrimidin-5 -yloxy } ethyl)piperidine- 1 -carboxylic acid tert- butyl ester (Preparation 120, 150mg, 0.25mmol) in DCM (2.5mL) was added TFA (0.5mL) and the reaction was shaken at r.t. for 16 h. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo to afford the title compound: RT = 1.99 min; mlz (ES ) = 404.1 [M+ H]+.
Preparation 122: (5'-Fluoro-3,4,5,6-tetrah dro-2H-[l,2']bipyridinyl-4-yl)methanol
Figure imgf000081_0002
A combination of 2,5-difluoropyridine (0.5g, 4mmol) and 4- (hydroxymethyl)piperidine (1.5g, 13mmol), in a microwave vial, was warmed gently with a heat gun to achieve a melt. The reaction was heated in a microwave reactor at 60°C for 15min, and then at 100°C for 30min. The mixture was partitioned between EtOAc and water and the organic phase separated. The aqueous phase was extracted with EtOAc, then the combined organic fractions were dried (MgS04) and the solvent removed in vacuo.
Purification by column chromatography afforded the title compound: RT = 1.87 min; mlz (ES ) = 211.1 [ + H] .
Preparation 123: [l-(4-Methylthiazol-2-yl)piperidin-4-yl]methanol ^N f OH
A combination of 2-chloro-4-methylthiazole (0.25g, 2mmol) and 4- (hydroxymethyl)piperidine (0.50g, 4mmol), in a microwave vial, was warmed gently with a heat gun to achieve a melt. The reaction was heated in a microwave reactor at 100°C for 15min, and then at 100°C for a further 30min. The resulting gum was partitioned between DCM and water, and the organic phase was separated and concentrated in vacuo. The remaining aqueous phase was extracted with EtOAc, then the organic layer was washed with brine and concentrated in vacuo. The two organic residues were combined and triturated with EtOAc. The supernatant was separated and purified by column chromatography to afford the title compound: RT = 1.74 min; mlz (ES+) = 213.1 [M+ H]+. Preparation 124: [(3R,45)-l-{5-[l-(5-Ethyl-2-methyl-2H-[l,2,4]triazol-3-yl)piperidin-4- ylmethoxy]pyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl] carbamic acid tert- butyl ester
Figure imgf000082_0001
To a solution of [(3i?,45)-4-(2,4,5-trifluorophenyl)-l-(5-hydroxypyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 88, 29.3mg, 0.07mmol) in THF (0.6mL) was added PS-triphenylphosphine (1.52 mmol/g loading; 70.4mg, 0.1 lmmol) and the mixture was allowed to stand at r.t. for 5 min. A solution of TBAD (18.1mg, 0.08mmol) in THF (0.3mL) was added and the mixture was stirred at r.t. for 5 min. A solution of [l-(5-ethyl-2-methyl-2H-[l,2,4]triazol-3-yl)piperidin-4-yl]methanol
(Preparation 109, 16mg, 0.07mmol) in THF (0.3mL) was added and the mixture was stirred at r.t. for 2h. Further portions of TBAD (18.1mg, 0.08mmol) and PS-triphenylphosphine (1.52 mmol/g loading; 70.4mg, 0.1 lmmol) were added and the mixture was heated to 40°C for 2 h. The reaction mixture was filtered and the resin washed with MeOH. The filtrate was concentrated in vacuo before being purified by preparative HPLC. Removal of the solvent in vacuo afforded the title compound: RT = 3.73 min; mlz (ES+) = 617.6 [M+ H]+. Preparation 125: [(3R,4S)-l-[5-(5'-Fluoro-3,4,5,6-tetrahydro-2H-[l,2']bipyridinyl-4- ylmethoxy)pyrimidin-2-yl] -4-(2,4,5-trifluorophenyl)pyr rolidin-3-yl] carbamic acid tert- butyl ester
Figure imgf000083_0001
To a solution of [(3 ?,4S)-4-(2,4,5-trifluorophenyl)- 1 -(5-hydroxypyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 88, 50mg, O. lOmmol) and (5'- fluoro-3,4,5,6-tetrahydro-2H-[l,2']bipyridinyl-4-yl)methanol (Preparation 122, 31mg, 0.15mmol), in a combination of DCM (2mL) and THF (2mL), was added PS- triphenylphosphine (1.94 mmol/g loading; 113mg, 0.22mmol) and the mixture was allowed to stir at r.t. for 5 min. TBAD (5 lmg, 0.22mmol) was added and the mixture was stirred at r.t. for 16 h. Further portions of TBAD (5 lmg, 0.22mmol) and PS-triphenylphosphine (1.94 mmol/g loading; 113mg, 0.22mmol) were added and the mixture was heated to 40°C for 2 h before being allowed to stir at r.t. for 60 h. The reaction mixture was filtered, the resin washed with MeOH, and the filtrate was concentrated in vacuo. The resulting residue was partitioned between DCM and water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and the solvent removed in vacuo. Trituration with MeOH afforded the title compound: RT = 4.50 min; mlz (ES+) = 603.3 [M+ H]+. Preparation 126: [(3R,45)-l-{5-[l-(4-Methylthiazol-2-yl)piperidin-4- ylmethoxy]pyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl] carbamic acid tert- butyl ester
Figure imgf000083_0002
To a solution of [(3 ?,45)-4-(2,4,5-trifluorophenyl)-l-(5-hydroxypyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 88, 50mg, O.lOmmol) and [1- (4-methylthiazol-2-yl)piperidin-4-yl]methanol (Preparation 123, 31mg, 0.15mmol) in a combination of DCM (2mL) and THF (2mL) was added PS-triphenylphosphine (1.94 mmol/g loading; 113mg, 0.22mmol) and the reaction was stirred at r.t. for 5 min. TBAD (51mg, 0.22mmol) was added and the mixture was stirred at r.t. for 16 h. before being heated to 40 °C for 2 h. Further portions of PS-triphenylphosphine (1.94 mmol/g loading; 113mg, 0.22mmol) and TBAD (51mg, 0.22mmol) were added, then the reaction continued to heat at 40 °C for 2 h., before being allowed to stand at r.t. for 60 h. The reaction mixture was filtered, the resin washed with MeOH, and the filtrate was concentrated in vacuo. The resulting residue was partitioned between DCM and water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and the solvent removed in vacuo. Purification by preparative HPLC afforded the title compound: RT = 3.42 min; mlz (ES+) = 605.2 [M+ H]+.
Preparation 127: [(3R,45)-l-{5-[l-(3-Ethyl-[l,2,4]triazolo[4,3-c]pyrimidin-7- yl)piperidin-4-ylmethoxy] pyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3- yl]carbamic acid terf-but l ester
Figure imgf000084_0001
Triethylamine (40μί, 0.3mmol) and methanesulfonyl chloride (20μΙ^, 0.2mmol) were added to a solution of [l-(3-ethyl-[l,2,4]triazolo[4,3-c]pyrimidin-7-yl)piperidin-4- yljmethanol (Preparation 110, 37mg, 0.14mmol) in DCM (lmL) and the reaction was shaken at r.t. for 2 h. The mixture was washed with 1M HC1 (lmL) and passed through a phase separator. The aqueous phase was washed with DCM, then the organic fractions were combined and concentrated in vacuo.
A solution of [(3i?,45)-4-(2,4,5-trifluorophenyl)-l-(5-hydroxypyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 88, 50mg, 0.12mmol) in DMF (lmL) was added to the crude residue, followed by K2CO3 (50mg, 0.40mmol), and the reaction was heated to 80 °C for 16 h. The mixture was partitioned between DCM and water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and concentrated in vacuo. Purification by preparative HPLC afforded the title compound: RT = 3.93 min; mlz (ES ) = 654.3 [M+ H]+.
Preparation 128: [(3R,45)-l-{5-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-3- ylmethoxy]pyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl] carbamic acid tert- butyl ester
Figure imgf000085_0001
The title compound was prepared from [l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-3-yl]methanol (Preparation 111) by formation of the mesylate intermediate, followed by reaction with [(3i?,45)-4-(2,4,5-trifluorophenyl)-l-(5-hydroxypyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 88) employing the procedure outlined in Preparation 127: RT = 4.53 min; mlz (ES+) = 618.3 [M+ H]+.
Preparation 129: Methanesulfonic acid (R)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl] ethyl ester
Figure imgf000085_0002
To a solution of (i?)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethanol (Preparation 62, 4.0g, 16.7mmol) in DCM (50mL) was added triethylamine (2.8mL, 20.0mmol) and the mixture was cooled to 0°C. Methanesulfonyl chloride (1.6mL,
20.0mmol) was added over 10 min and the reaction was allowed to stir at 0°C for 2 h, before being quenched with water. The mixture was washed with brine (x 2), dried (Na2S04), and the solvent removed in vacuo to afford the title compound: : 1H NMR 5H (400MHZ , CDCI3):
4.73 - 4.65 (m, 1H), 4.17 - 4.18 (m, 2H), 3.08 - 2.97 (m, 5H), 2.93 - 2.84 (m, 1H), 1.94 -
1.74 (m, 3H), 1.53 - 1.35 (m, 5H), 1.29 (d, J= 7.0 Hz, 6H). Preparation 130: [(3R,4S)-4-(2,5-Difluorophenyl)-l-(5-{(S)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethylamino}pyrimidin-2-yl)pyrrolidin-3- yl]carbamic acid tert-but \ ester
Figure imgf000086_0001
To [(3i?,45)-l-(5-aminopyrimidin-2-yl)-4-(2,5-difluorophenyl)pyrrolidin-3- yljcarbamic acid tert-butyl ester (preparation 81, 256mg, 0.65mmol) was added a solution of methanesulfonic acid (i?)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethyl ester (Preparation 129, 208mg, 0.65mmol) in MeCN (5.5mL). K2C03 (99.4mg, 0.72mmol) was added and the reaction was heated at reflux for 16 h. The mixture was reduced in vacuo to a volume of 2mL, heated in a microwave reactor at 100°C for 3 h, and then heated at reflux for 144 h. The solvent was removed in vacuo, then the resulting residue was dissolved in EtOAc, washed with water, then brine, and dried (MgS04), before removal of the solvent in vacuo. Purification by column chromatography (IH:EtOAc, 5:4) and further purification by preparative HPLC afforded the title compound: RT = 3.95 min; m/z (ES ) = 613.3 [M +
H]+.
Preparation 131: [(3R,45)-l-{5-[l-(3-Ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl] carbamic acid tert- butyl ester
Figure imgf000086_0002
To a solution of 2-chloro-5-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidine (Preparation 53, 162mg, 0.5mmol) and [(3 ?,45)-4-(2,4,5- trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 158mg, 0.5mmol) in DMSO (lmL) was added DBU (75μΕ, 0.5mmol) and the reaction was heated to 100°C for 72 h. The mixture was diluted with DCM, washed with brine and passed through a phase separater. Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 40:60) afforded the title compound: RT = 4.25 min; mlz (ES ) =
Figure imgf000087_0001
Preparation 132: [(3R,45)-l-{5-[l-(5-Isopropyl-[l,2,4]oxadiazol-3-yl)piperidin-4- ylmethoxy]pyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl] carbamic acid tert- butyl ester
Figure imgf000087_0002
The title compound was prepared by reacting 2-chloro-5-[l-(5-isopropyl- [l,2,4]oxadiazol-3-yl)piperidin-4-ylmethoxy]pyrimidine (Preparation 60) with [(3R,4S)-4- (2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39) employing the procedure outlined in Preparation 131. Purification by column
chromatography (IH:EtOAc, 70:30) afforded the title compound: RT = 4.74 min; mlz (ES ) =
Figure imgf000087_0003
Preparation 133: 2-((E)-2-Nitrovinyl) ridine
Figure imgf000087_0004
A solution of pyridine-2-carbaldehyde (lO.Og, 93mmol) and nitromethane (8.3mL, 112mmol) in MeOH (85mL), under argon, was cooled to -15°C. A solution of NaOH (3.9g, 98mmol) in water (lOmL) was added, drop-wise, over 20 min. The pale yellow precipitate which resulted was stirred at 0°C for 10 min. Ice water (60mL) was added and the mixture was stirred for 15 min before the addition of sat. NH4C1 solution (70mL). The organic fraction was extracted with DCM (x), dried (Na2S04) and the solvent removed in vacuo.
The residue was dissolved in acetic anhydride (lOmL, 195mmol) and cooled to 0°C under argon. DMAP (0.8g, 6mmol) was added and the ice bath was removed, allowing the reaction to stir at r.t. for 16 h. The reaction solvent was extracted with DCM, washed with brine, and the solvent removed in vacuo. The resulting residue was re-dissolved in DCM and the solution was washed with 2M NaOH solution, then brine, before being dried (MgS04). Removal of the solvent in vacuo afforded the title compound: 1H NMR δΗ (300MHz , CDCI3): 8.74 - 8.60 (m, 1H), 8.07 - 7.85 (m, 2H), 7.82 - 7.72 (m, 1H), 7.50 - 7.43 (m, 1H), 7.40 - 7.32 (m, 1H).
Preparation 134: 2-((frans)-l-Benz l-4-nitropyrrolidin-3-yl)pyridine
Figure imgf000088_0001
The title compound was prepared from 2-((E)-2-Nitrovinyl)pyridine (Preparation 133) employing the method outlined in Preparation 31, but the reaction was carried out at 0°C. Purification by column chromatography (Hexane:EtOAc, 100:0, 90: 10, 80:20, 50:50) afforded the title compound. LCMS Method 2: RT = 0.84 min; mlz (ES+) = 284.2 [M+ H]+.
Preparation 135: ((irans)-l-Benzyl-4-pyridin-2-ylpyrrolidin-3-yl)carbamic acid tert- butyl ester
Figure imgf000088_0002
A combination of 2-((tra/?5)-l-benzyl-4-nitropyrrolidin-3-yl)pyridine (Preparation 134, 15.3g, 54mmol) and zinc dust (28. Og, 432mmol) in a mixture of AcOH and EtOH (1 : 1, 300mL) was heated to 60°C for 1 h. After complete reaction the mixture was cooled and filtered, washing with AcOH, and the filtrate was concentrated in vacuo. The resulting residue was re-dissolved in DCM, washed with brine, and dried (Na2S04). Removal of the solvent in vacuo and purification by column chromatography (DCM:MeOH, 100:0, 98:2, 95:5) afforded the intermediate product (tra/75)-l-benzyl-4-pyridin-2-yl-pyrrolidin-3- ylamine. LCMS Method 2: RT = 0.63 min; mlz (ES+) = 254.3 [M+ H]+.
To a solution of the product in THF (lOOmL), under argon, was added triethylamine (5.5mL, 39mmol) and the mixture was cooled to 0°C. Di-tert-butyl dicarbonate (5.2g, 24mmol) was added, then the reaction was allowed to reach r.t. and stirred for 16 h. The solvent was removed in vacuo, and the resulting residue was re-dissolved in EtOAc, washed with brine, dried (Na2S04), and the solvent removed in vacuo. The product was triturated several times with heptane to afford the title compound. LCMS Method 3: RT = 2.35 min; mlz (ES+) = 354.3 [M+ H]
Preparation 136: ((frans)-4-Pyridin-2- lpyrrolidin-3-yl)carbamic acid tert-buty\ ester
Figure imgf000089_0001
A solution of ((tra/75)-l-benzyl-4-pyridin-2-ylpyrrolidin-3-yl)carbamic acid tert-butyl ester (Preparation 135, 500mg, 1.42mmol) in MeOH (28mL) was passed through an H- Cube apparatus (10% pd/C Catcart 30, 30bar, 90°C) at a flow rate of ImL per min. Removal of the solvent in vacuo and purification by column chromatography (DCM:MeOH, 90: 10) afforded the title compound: RT = 1.84 min; mlz (ES+) = 264.1 [M+ H]+.
Preparation 137: 4-Methanesulf nyloxymethylpiperidine-l-carboxylic acid benzyl ester
Figure imgf000089_0002
To a solution of 4-hydroxymethylpiperidine-l-carboxylic acid benzyl ester (16.2g, 65mmol) and methanesulfonyl chloride (8.2g, 71mmol) in DCM (80ml), cooled to 4°C, was added a solution of triethylamine (7.6g, 75mmol) in DCM (20ml), drop-wise, over 1 h. The resulting reaction was stirred for 30 min. The mixture was washed with water (x 2), dried (MgS04) and the solvent removed in vacuo to afford the title compound: 1H NMR 5H
(400MHz, CDCls): 7.43 - 7.32 (m, 5H), 5.16 (s, 2H), 4.28 (Br. s, 2H), 4.10 (m, 2H), 3.05 (s, 3H), 2.84 (t, 2H), 2.04 - 1.92 (m, 1H), 1.80 (m, 2H), 1.34 - 1.21 (m, 2H).
Preparation 138: 4-(2-Chloropyrimidin-5-yloxymethyl)piperidine-l-carboxylic acid benzyl ester
Figure imgf000089_0003
A combination of 4-methanesulfonyloxymethylpiperidine-l-carboxylic acid benzyl ester (Preparation 137, 20.2g, 61mmol), 2-chloropyrimidin-5-ol (containing 30% 2- bromopyrimidin-5-ol, 10.5g, 73mmol) and potassium carbonate (11.8g, 85mmol) in DMF (200mL) was heated to 80°C for 16 h. The reaction was cooled, diluted with water (500mL), and EtOAc (300mL) was added. Further water (lOOmL) and Brine (500mL) were added, and the organic phase was separated. The aqueous phase was extracted with EtOAc (x 3). All organic fractions were combined, washed with 1M NaOH solution (500mL), then brine (500mL), and dried (MgS04). Removal of the solvent in vacuo afforded a crude residue. The remaining aqueous phase was again extracted with EtOAc (x 2). The organic fractions were washed with 1M NaOH solution (250mL), then brine (250mL), and dried (MgS04).
Removal of the solvent in vacuo afforded a further amount of the crude residue. The two fractions of crude material were combined and purified by column chromatography
(DCM:EtOAc, 90: 10) to afford the title compound as a mixture of 4-(2-chloropyrimidin-5- yloxymethyl)piperidine-l-carboxylic acid benzyl ester and 4-(2-bromopyrimidin-5- yloxymethyl)piperidine-l-carboxylic acid benzyl ester (64:36): 1H NMR δπ (400MHz, CDC13): 8.30 (s, 1.4H), 8.26 (s, 0.6H), 7.41 - 7.31 (m, 5H), 5.17 (s, 2H), 4.28 (Br. s, 2H), 3.93 (d, J= 6.2Hz, 2H), 2.86 (m, 2H), 2.10 - 1.99 (m, 1H), 1.87 (d, J= 12.8Hz, 2H), 1.35 (m, 2H). Preparation 139: 4-{2-[(3R,4S)-3-tert-Butoxycarbonylamino-4-(2,5- difluorophenyl)pyrrolidin-l-yl]pyrimidin-5-yloxymethyl}piperidine-l-carboxylic acid benzyl ester
Figure imgf000090_0001
To a solution of 4-(2-chloropyrimidin-5-yloxymethyl)piperidine-l-carboxylic acid benzyl ester (containing 36% 4-(2-bromopyrimidin-5-yloxymethyl)piperidine-l-carboxylic acid benzyl ester, Preparation 138, 13.22g, 35mmol) and [(3i?,45)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 5.45g, 18.3mmol) in DMSO (150mL) was added DBU (3.60mL, 24.4mmol) and the reaction was heated to 100°C for 16 h. A second portion of [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin-3- yljcarbamic acid tert-butyl ester (Preparation 48, 0.55g, 1.8 mmol) was added and heating continued for 4 hours. A third portion of [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin-3- yljcarbamic acid tert-butyl ester (Preparation 48, 4.00g, 13.4mmol) was added, along with DBU (1.57mL, 1 lmmol), and the reaction continued for 16 h. On cooling, the mixture was diluted with water (600mL) and extracted with a mixture of EtOAc and Et20 (95:5, x 4). The combined organic fractions were washed with brine, and dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (DCM:EtOAc, 80:20) afforded the title compound: 1H NMR δΗ (400MHz, CDC13): 8.13 (s, 2H), 7.41 - 7.31 (m, 5H), 7.02 - 7.21 (m, 2H), 7.0 - 6.93 (m, 1H), 4.71 (Br. s, 1H), 5.17 (s, 2H), 4.47 (Br.s, 1H), 4.28 (Br. s, 2H), 4.22 - 4.07 (m, 2H), 3.83 (d, J= 6.2Hz, 2H), 3.70 - 3.60 (m, 2H), 3.41 (m, 1H) 2.86 (m, 2H), 2.06 - 1.95 (m, 1H), 1.86 (d, J= 14Hz, 2H), 1.43 (s, 9H), 1.33 (m, 2H).
Preparation 140: {(3R,45)-4-(2,5-Difluorophenyl)-l-[5-(piperidin-4- ylmethoxy)pyrimidin-2-yl]p rrolidin-3-yl}carbamic acid terf-butyl ester
Figure imgf000091_0001
To a solution of 4-{2-[(3i?,45)-3-tert-butoxycarbonylamino-4-(2,5- difluorophenyl)pyrrolidin- 1 -yl]pyrimidin-5 -yloxymethyl} piperidine- 1 -carboxylic acid benzyl ester (Preparation 139, 13.7g, 22mmol) in ethanol (230mL) was added palladium carbon (10% wt., 4.1 g, 50% water) and the reaction was stirred under an atmosphere of hydrogen for 1 h. The mixture was filtered and the solvent removed in vacuo to afford the title compound: 1H NMR δΗ (400MHz, CDC13): 8.14 (s, 2H), 7.12 - 7.01 (m, 2H), 7.0 - 6.93 (m, 1H), 4.72 (Br. s, 1H), 4.47 (Br.s, 1H), 4.22 - 4.07 (m, 2H), 3.80 (d, J= 6.5Hz, 2H), 3.69 - 3.60 (m, 2H), 3.42 (m, 1H) 3.17 (m, 2H), 2.68 (m, 2H), 2.00 - 1.75 (m, 4H), 1.43 (s, 9H), 1.33 (m, 2H). Preparation 141: [(3R,4S)-l-[5-(l-Cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]-4-(2,5- difluorophenyl)pyrrolidin-3- l]carbamic acid tert-butyl ester
Figure imgf000092_0001
{(3i?,45)-4-(2,5-Difluorophenyl)-l-[5-(piperidin-4-ylmethoxy)pyrimidin-2- yl]pyrrolidin-3-yl}carbamic acid tert-butyl ester (Preparation 140, 10.4g, 21.3mmol) and NaHC03 (5.37 g, 63.8mmol) were added to a combination of water (30mL) and DCM (30mL) and the mixture was cooled to 0°C. To the slurry that formed were added further volumes of water (20mL) and DCM (20mL). A solution of Cyanogen bromide (2.5g, 23.6mmol) in DCM (30mL) was added drop-wise, over 15 minutes, whilst maintaining the temperature below 5°C, then the reaction was stirred for 1 h at 0°C before being allowed to continue at r.t. for 16 h. The mixture was separated and the aqueous layer extracted with DCM (x 2). The organic fractions were combined, washed with sat. NaHC03 solution, then brine, and dried (MgS04). Removal of the solvent in vacuo and purification by column chromatography (DCM:MeOH, 95:5) afforded the title compound: 1H NMR δΗ (400MHz, CDC13): 8.13 (s, 2H), 7.10 - 7.02 (m, 2H), 7.0 - 6.93 (m, 1H), 4.71 (Br. S, 1H), 4.47 (Br.s, 1H), 4.22 - 4.07 (m, 2H), 3.83 (d, J= 6.1Hz, 2H), 3.69 - 3.60 (m, 2H), 3.53 (m, 2H), 3.42 (m, 1H) 3.10 (m, 2H), 2.0 - 1.85 (m, 3H), 1.55 (m, 2H), 1.43 (s, 9H).
Preparation 142: ((3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(2H-tetrazol-5-yl)piperidin-4- ylmethoxy]pyrimidin-2- l}pyrrolidin-3-yl)carbamic acid tert-butyl ester
Figure imgf000092_0002
To a solution of [(3 ?,45)-l-[5-(l-cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]-4- (2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141, 300mg, 0.60mmol) in DMF (5mL), under argon, was added ammonium chloride (47mg, 0.87mmol), portion-wise. Sodium azide (57mg, 0.87mmol) was then added, portion-wise, and the reaction was allowed to stir at r.t. for 20min, before being heated to 100°C for 16 h. On cooling, the mixture was diluted with a combination of water and brine, and extracted into EtOAc (x 2). The combined organic fractions were washed with brine, dried (MgS04), and the solvent removed in vacuo. Trituration with DCM afforded the title compound: RT = 3.62 min; mlz (ES+) = 558.3 [M+ H]+.
Preparation 143: ((3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(2-isopropyl-2H-tetrazol-5- yl)piperidin-4-ylmethox ]pyrimidin-2-yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester
Figure imgf000093_0001
To a solution of ((3i?,45)-4-(2,5-difluorophenyl)-l-{5-[l-(2H-tetrazol-5-yl)piperidin- 4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester (Preparation 142, 196mg, 0.35mmol) and acetone (2.5mL) in DMF (0.5mL), under argon, was added K2CO3 (146mg, 1.05mmol), followed by isopropyl iodide (70uL, 0.70mmol). The reaction was heated to 50°C for 3.5 h, and then concentrated in vacuo. To the crude residue was added a combination of water and brine, and the mixture was extracted with EtOAc (x 2). The combined organic layers were washed with brine, dried (MgS04), and the solvent removed in vacuo. Purification by preparative HPLC (basic method) afforded the title compound: RT = 4.53 min; mlz (ES+) = 600.4 [M+ H]+.
Preparation 144: ((3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(5-isopropyl-[l,3,4]oxadiazol- 2-yl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester
Figure imgf000093_0002
To a solution of {(3i?,45)-4-(2,5-difluorophenyl)-l-[5-(piperidin-4- ylmethoxy)pyrimidin-2-yl]pyrrolidin-3-yl}carbamic acid tert-butyl ester (Preparation 140, 70mg, O.lOmmol) in DMF (4mL) was added 5-isopropyl-3H-[l,3,4]oxadiazol-2-one (27mg, 0.21mmol), followed by BOP (95mg, 0.21mmol) and DIPEA (50μΙ, 0.28mmol), and the reaction was allowed to stir at r.t. for 16 h. The mixture was diluted with water and extracted into EtOAc (x 2). The combined organic fractions were passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The resulting residue was passed down an SCX(POH) cartridge, eluting with MeOH then NH4OH in MeOH. Both fractions were collected and concentrated in vacuo. Further purification by preparative HPLC afforded the title compound: RT = 4.09 min; m/z (ES+) = 600.3 [M+ H]+.
Preparation 145: ((3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(N- hydroxycarbamimidoyl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3- yl)carbamic acid tert-but \ ester
Figure imgf000094_0001
A solution of [(3 ?,45)-l-[5-(l-cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141, 4.0g, 7.8mmol), dissolved in EtOH (40 ml), was warmed to 50°C and further EtOH (35ml) was added until a solution was obtained. The solution was allowed to cool to 40°C and hydroxylamine (50% in water, 0.5mL, 7.8mmol) in EtOH (5ml) was added drop-wise, over 10 min. The reaction was stirred at this temperature for 16 h, after which time a white precipitate had formed. The mixture was filtered, and the resulting solid was triturated with EtOAc (x 2) to afford the title compound: 1H NMR δΗ (400MHz, CDC13): 8.13 (s, 2H), 7.10 - 7.02 (m, 2H), 7.0 - 6.93 (m, 1H), 4.80 (br. s, 1H), 4.64 (br. s, 1H), 4.47 (br. s, 1H), 4.22 - 4.07 (m, 2H,), 3.80 (m, 2H), 3.74 - 3.67 (m, 2H),3.67 - 3.59 (m, 2H), 3.42 (m, 1H), 2.79 - 2.69 (m, 2H), 2.00 - 1.80 (m, 3H), 1.48 - 1.34 (m, 11H).
Preparation 146: 3-Methoxy-2-methyl ropionic acid
Figure imgf000094_0002
To a solution of 3-methoxy-2-methylpropionic acid methyl ester (3.0g, 20mmol) in EtOH (30mL) was added a solution of NaOH (1.4g, 34mmol) in water (30mL) and the reaction was heated to 60°C for 2 h. On cooling, the EtOH was removed in vacuo, and the residue was partitioned between EtOAc and water. The mixture was acidified with 1M HC1 solution, extracted with EtOAc, and the organic layer dried (MgS04). Removal of the solvent in vacuo afforded the title compound: 1H NMR δΗ (400MHz, CDC13): 3.64-3.59 (m, 1H), 3.52-3.48 (m., 1H), 3.40 (s, 3H), 2.85-2.75 (m, 1H), 1.22 (d, J=7.01 Hz, 3H)
Preparation 147: [(3R,45)-l-(5-{l-[5-(l,l-Difluoroethyl)-[l,2,4]oxadiazol-3-yl]piperidin- 4-ylmethoxy}pyrimidin-2-yl)-4-(2,5-difluorophenyl)pyrrolidin-3-yl] carbamic acid tert- butyl ester
Figure imgf000095_0001
To a solution of ((3i?,45)-4-(2,5-difiuorophenyl)-l-{5-[l-(N- hydroxycarbamimidoyl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester (Preparation 145, 50mg, 0.09mmol) in DMF (3mL) was added 2,2- difluoropropionic acid (18mg, 0.16mmol), followed by HOBt (28mg, 0.18mmol), and finally EDCI (35mg, 0.18mmol), and the reaction was allowed to stir at r.t. for 90 min. The solvent was removed in vacuo and the resulting residue was purified by preparative HPLC (basic method) to afford the title compound: RT = 4.64 min; mlz (ES+) = 622.3 [M+ H]+.
Preparation 148: (S)-N-Hydroxy-2-methoxypropionamidine
Figure imgf000095_0002
To a solution of (5)-2-methoxypropionitrile (910mg, 10.69mmol) in IMS (lOmL) was added hydroxylamine (50% in water, 1.55mL, 23.52mmol) and the reaction was heated to 80°C for 16 h. On cooling, the solvent was removed in vacuo and the product recrystallised from heptane: EtOAc (1 :1). The mother liquor was concentrated in vacuo and crystallised for a second time. Both crops of material were combined and dried under vacuum to afford the title compound. LCMS method 2: RT = 0.33 min; mlz (ES+) = 119.0 [M+ H]+. Preparation 149: 2,2-Difluoro-N-hydrox ropionamidine
Figure imgf000096_0001
To a solution of 2,2-difluoropropionitrile (lOOOmg, 10.98mmol) in IMS (30mL) was added hydroxylamine (50% in water, 792μΕ, 13.18mmol) and the reaction was heated to 90°C for 16 h. On cooling, the solvent was removed in vacuo, azeotroping with toluene. The residue was purified by column chromatography (heptane :EtO Ac, 4:1) to afford the title compound: 1H NMR δΗ (300MHz, CDC13): 4.78 (br. s, 1H), 1.90 - 1.73 (m, 3H).
Preparation 150: ((3R,45)-4-(2,5-Difluor ophenyl)- 1-{5- [l-(5-ethyl- [ 1 ,2,4] oxadiazol-3- yl)piperidin-4-ylmethox ]pyrimidin-2-yl}pyrrolidin-3-yl)carbamic acid terf-butyl ester
Figure imgf000096_0002
To a combination of methoxyacetic acid (lOmgg, 0.2mmol) and ((3i?,45)-4-(2,5- difluorophenyl)- 1 - {5 -[ 1 -(N-hydroxycarbamimidoyl)piperidin-4-ylmethoxy]pyrimidin-2- yl}pyrrolidin-3-yl)carbamic acid fert-butyl ester (Preparation 145, 50mg, O. lmmol) in DMF (3mL, 40) was added HOBt (28mg, 0.18mmol), followed by EDCI (35mg, 0.18mmol), and the reaction was stired at r.t. for 180 min, before being heated to 70°C for 90min. On cooling, the solvent was removed in vacuo. The resulting residue was purified by preparative HPLC (basic method) and fractions containing product were concentrated in vacuo to afford the title compound: RT = 4.47 min; mlz (ES+) = 586.2 [M+ H]+.
The following compounds were prepared by reacting ((3i?,45)-4-(2,5- difluorophenyl)- 1 - {5 -[ 1 -(N-hydroxycarbamimidoyl)piperidin-4-ylmethoxy]pyrimidin-2- yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester (Preparation 145) with the appropriate acid building block, employing the procedure outlined in Preparation 150: Prep
Structure Name LCMS No.
[(3R,4S)- 1 - {5-[l -(5-Difluoromethyl- [l,2,4]oxadiazol-3-yl)piperidin-4- RT = 4.52 min; mlz
151 ylmethoxy]pyrimidin-2-yl}-4-(2,5- (ES+) = 608.2 [M + difluorophenyl)pyrrolidin-3-yl]carbamic acid tert- H]+.
butyl ester
[(3R,4S)-4-(2,5-Difluorophenyl)-l-(5-{l-[5-(l- RT = 4.77 min; mlz methylcyclopropyl)-[l,2,4]oxadiazol-3- (ES+) = 612.3 [M +
152
yl]piperidin-4-ylmethoxy}pyrimidin-2- H]+.
yl)pyrrolidin-3-yl]carbamic acid fert-butyl ester
((3R,4S)-4-(2,5-Difluorophenyl)-l-{5-[l-(5- RT = 4.43 min; mlz ethoxymethyl-[ 1 ,2,4]oxadiazol-3-yl)piperidin-4- (ES+) = 616.3 [M +
153
ylmethoxy]pyrimidin-2-yl} pyrrolidin-3 - H]+.
yl)carbamic acid fert-butyl ester
Figure imgf000098_0001
Prep
Structure Name LCMS No.
[(3R,4S)-4-(2,5-Difluorophenyl)-l-(5-{l-[5-(3- RT = 4.32 min; mlz methylisoxazol-5-ylmethyl)-[ 1 ,2,4]oxadiazol-3- (ES+) = 653.3 [M +
157
yl]piperidin-4-ylmethoxy}pyrimidin-2- H]+.
yl)pyrrolidin-3-yl]carbamic acid fert-butyl ester
Preparation 158: 2-Chloro-5- [ l-(3-isopropyl- [1 ,2,4] oxadiazol-5-yl)piperidin-4- yloxy] pyrimidine
Figure imgf000100_0001
To a solution of l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-ol (Preparation 83, 422mg, 2.0mmol) in DCM was added triethylamine (324μΙ^, 2.4mmol) and the mixture was cooled to 0°C. Methanesulfonyl chloride (171 μί, 2.2mmol) was added, and the reaction was allowed to reach r.t. over 15 min, before being stirred for a further 15 min. The mixture was partitioned between DCM and 1M HC1 solution, and dried using a phase separator. Removal of the solvent in vacuo afforded the intermediate product methanesulfonic acid l-(3- isopropyl-[l ,2,4]oxadiazol-5-yl)piperidin-4-yl ester.
To a combination of the intermediate and 2-chloropyrimidin-5-ol (containing 40% 2- bromopyrimidin-5-ol, 358mg, 2.4mmol) in DMF (20mL) was added K2CO3 (828mg, 6.0mmol) and the reaction was heated to reflux for 16 h. The solvent was removed in vacuo, then the resulting residue was taken into MeOH and filtered. The filtrate was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. Further purification by column chromatography
(IH:EtOAc, 1 :1) afforded the title compound (contains 40% 2-bromo-5-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yloxy]pyrimidine): RT = 3.20 min; m/z (ES+) = 324.1 [M +
H]+.
Preparation 159: ((3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(5-dimethylaminomethyl- [l,2,4]oxadiazol-3-yl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-yl)carbamic acid tert-buty\ ester
Figure imgf000100_0002
To a combination of dimethylaminoacetic acid (17mg, 0.16mmol) and ((3R,4S)-4- (2,5-difluorophenyl)- 1 - {5 -[ 1 -(N-hydroxycarbamimidoyl)piperidin-4-ylmethoxy]pyrimidin- 2-yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester (Preparation 145, 50mg, 0.09mmol) in DMF (3mL) was added HOBt (28mg, 0.18mmol), followed by EDCI (35mg, 0.18mmol), and the reaction was allowed to stir at r.t. for 16 h, before being heated to 70°C for 90min. On cooling, the solvent was removed in vacuo. The resulting residue was purified by preparative HPLC (basic method) and fractions containing product were concentrated in vacuo to afford the title compound: RT = 2.93 min; mlz (ES ) = 615.2 [M+ H]+.
The following compounds were prepared by reacting ((3i?,45)-4-(2,5- difluorophenyl)- 1 - {5 -[ 1 -(N-hydroxycarbamimidoyl)piperidin-4-ylmethoxy]pyrimidin-2- yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester (Preparation 145) with the appropriate carboxylic acid building block, employing the procedure outlined in Preparation 159:
Figure imgf000102_0001
Figure imgf000103_0001
Figure imgf000104_0001
Preparation 167: N-Hydroxy-2-methox acetamidine
Figure imgf000105_0001
To a solution of methoxyacetonitrile (5.3mL, 70.42mmol) in EtOH (lOmL) was added a solution of hydroxylamine (50% in water, 4.6mL, 70.42mmol) and the reaction was heated to reflux for 16 h. The solvent was removed in vacuo, azeotroping with toluene, to afford the title compound: 1H NMR δΗ (400MHz , CDC13): 5.29 (s, 1H), 4.87 (br. s., 2H), 3.92 (s, 2H), 3.33 (s, 3H).
Preparation 168: N-Hydroxytetrahydr furan-3-carboxamidine
Figure imgf000105_0002
To a solution of tetrahydrofuran-3-carbonitrile (lOOOmg, 10.3mmol) in IMS (7mL) was added hydroxylamine (50% in water, 750μί, 11.3mmol) and the reaction was heated to reflux for 16 h. On cooling, the solvent was removed in vacuo, azeotroping with toluene. The residue was purified by column chromatography (DCM:MeOH, 100:0, 95:5) to afford the title compound: 1H NMR δΗ (300MHz, CDC13): 7.90 (br. s, 1H), 4.60 (br. s, 2H), 4.10 - 3.85 (m, 2H), 3.80 - 3.60 (m, 2H), 3.03 - 2.82 (m, 1H), 2.30 - 1.90 (m, 2H).
Preparation 169: 2,2-Difluoro-N-hydrox acetamidine
Figure imgf000105_0003
To a solution of difluoroacetonitrile (2.21g, 28.7mmol) in EtOH (5mL) was added a solution of hydroxylamine (50% in water, 2.08mL, 31.6mmol) and the reaction was heated in a sealed tube for 16 h. On cooling, the solvent was removed in vacuo, azeotroping with toluene (x 3). The resulting residue was partitioned between DCM and water, and the organic phase separated. The aqueous phase was extracted with EtOAc (x 2), then organic fractions were combined, dried (Na2S04), and the solvent removed in vacuo to afford the title compound: RT = 0.32 min; mlz (ES ) = 111.0 [M+ H] . Preparation 170: N-Hydroxy-l-methylcyclopropanecarboxamidine
Figure imgf000106_0001
To a solution of 1-methylcyclopropanecarboxylic acid amide (1.50g, 15.13mmol) in THF (225mL), cooled to 0°C, was added pyridine (2.5mL, 30.26mmol) and the reaction was stirred at this temperature for 1 h. TFAA (10.5mL, 75.66mmol) was then added to the mixture, in one portion, and the reaction continued to stir at 0°C for 15 min. Sat. NaHC03 solution was added, until pH 8 was reached, and then the mixture was diluted with DCM. The organic phase was separated, and the aqueous phase was extracted with DCM (x 2). Organic fractions were combined, dried (Na2S04) and the solvent removed in vacuo to afford the intermediate product 1-methylcyclopropanecarbonitrile.
To a solution of the product in IMS (150mL) was added a solution of hydroxylamine (50% in water, 0.9mL, 13.7mmol) and the reaction was heated to 90°C for 16 h. On cooling, the solvent was removed in vacuo, and purification by column chromatography
(Heptane:EtOAc, 40:60, 20:80) afforded the title compound: 1H NMR δΗ (300MHz, CDC13): 6.68 (br. s, 1H), 4.57 (br. s, 2H), 1.29 (s, 3H), 0.96 - 0.90 (m, 2H), 0.59 - 0.51 (m, 2H).
Preparation 171: 2-Fluoro-N-hydroxy-2-methylpropionamidine
Figure imgf000106_0002
To a solution of 2-hydroxy-2-methylpropionitrile (2.00g, 23.5mmol) in DCM
(240mL), cooled to -78°C, was added DAST (4.65mL, 35.3mmol), drop-wise, over 3 min.
The reaction was allowed to warm to r.t. before stirring for a further 16 h. Water and sat.
NaHC03 solution were added, and the organic phase was separated and washed with sat.
NaHC03 solution . The aqueous fractions were combined and extracted further with DCM, then all the combined organic fractions were dried (Na2S04) and the solvent removed in vacuo to afford the intermediate product 2-fluoro-2-methylpropionitrile: 1H NMR 5H
(300MHz, CDC13): 1.80 (s, 3H), 1.73 (s, 3H).
To a solution of the product in IMS (50mL) was added hydroxylamine (50% in water, 1.41mL, 23.30mmol) and the reaction was heated to 85°C for 16 h. On cooling, the solvent was removed in vacuo, azeotroping with toluene (x 2). Purification by column chromatography (heptane:EtOAc, 1 :1), followed by trituration with heptane, afforded the title compound: 1H NMR δΗ (300MHz, CDC13): 4.78 (br. s, 2H), 1.58 (d, J= 22.5Hz, 6H).
Preparation 172: 2-Ethoxyacetamide
Figure imgf000107_0001
To a solution of ethoxyacetic acid (2.07g, 19.85mmol) in DCM (20mL), cooled to 0°C, was added oxalyl chloride (2.02mL, 23.82mmol), followed by DMF (2 drops), and the reaction was stirred at this temperature for 1 h, before continuing to stir at r.t. for 2 h. The mixture was cooled down to 0°C and a solution of ammonia in MeOH (17%, 50mL) was cautiously added, after which the reaction was stirred at r.t for 16 h. The solvent was removed in vacuo and DCM was added. The mixture was filtered, washing with DCM, and the resulting filtrate was concentrated in vacuo to afford the title compound: 1H NMR 5H (300MHz, CDC13): 6.55 (br. s, 1H), 5.66 (br. s, 1H), 3.93 (s, 2H), 3.61 - 3.50 (m, 2H), 1.27 1.20 (m, 3H).
Preparation 173: 2-Ethoxy-N-hydroxyacetamidine
Figure imgf000107_0002
To a solution of 2-ethoxyacetamide (Preparation 172, 1.84g, 17.84mmol) in THF (290mL), cooled to 0°C, was added pyridine (3.0mL, 37.09mmol), followed by TFAA (12.90mL, 92.73mmol), and the reaction was stirred at 0°C for 15 min. Sat. NaHC03 solution was added, until pH 8 was reached, and then the mixture was extracted with DCM (x 2). The organic fractions were combined, washed with 1M HC1 solution, then dried (Na2S04), and the solvent removed in vacuo to afford the intermediate product 1- methylcyclopropanecarbonitrile.
To a solution of the product in IMS (170mL) was added a solution of hydroxylamine (50% in water, 1.08mL, 17.98mmol) and the reaction was heated to 90°C for 16 h. On cooling, the solvent was removed in vacuo, and purification by column chromatography (Heptane:EtOAc, 20:80, 0: 100) afforded the title compound: 1H NMR δΗ (300MHz, CDC13) 5.89 (s, 1H), 4.98 (br. s, 2H), 4.02 (s, 2H), 3.57 - 3.48 (m, 2H), 1.26 - 1.19 (m, 3H). Preparation 174: (R)-N-Hydroxytetrahydrofuran-2-carboxamidine
Figure imgf000108_0001
The title compound was prepared from (i?)-tetrahydrofuran-2-carbonitrile employing the procedure outlined in Preparation 168. Purification by column chromatography
(Heptane:EtOAc, 50:50, 0: 100) afforded the title compound: 1H NMR δΗ (300MHz, CDC13): 4.44 - 4.32 (m, 1H), 4.00 - 3.74 (m, 2H), 2.20 - 1.80 (m, 4H).
Preparation 175 : [(3R,4S)- l-(5-Br omo-3-cyanopyridin-2-yl)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]car amic acid tert-buty\ ester
Figure imgf000108_0002
To a solution of 5-bromo-2-hydroxynicotinonitrile (300mg, 2.00mmol) in MeCN (2mL) was added DBU (338μΙ., 2.26mmol), followed by BOP (lOOOmg, 2.26mmol), in one portion, and the reaction was stirred at r.t. for 18 h. The reaction mixture was partitioned between DCM and brine and the layers were separated. The aqueous phase was extracted with DCM (x 2) then the combined organic fractions were passed through a phase separator and concentrated in vacuo. Purification by column chromatography (IH:EtOAc, 100:0 - 90:10) afforded the title compound: RT = 4.49 min; m/z (ES+) = 479.1, 481.1 [M+ H]+.
Preparation 176 : [(3R,45)- 1- [3-Cyano-5-(4,4,5,5-tetramethyl- [ 1 ,3,2] dioxaborolan-2- yl)pyridin-2-yl]-4-(2,5-difluoro henyl)pyrrolidin-3-yl]carbamic acid tert-buty\ ester
Figure imgf000108_0003
To a combination of [ 1 , Γ- bis(diphenylphosphino)ferrocene]dichloropalladium(II),complex with dichloromethane (1 : 1) (15.2mg, 0.02mmol), [(3i?,45)-l-(5-bromo-3-cyanopyridin-2-yl)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 175, 299. Omg, 0.62mmol), bis(pinacolato)diboron (174.2mg, 0.69mmol), and KOAc (183.7mg, 1.87mmol), under argon, was added 1,4-dioxane (30mL) and the reaction was heated to 80°C for 16 h. The solvent was removed in vacuo and the resulting residue was partitioned between EtOAc and water. The layers were separated and the aqueous phase was extracted with EtOAc. The combined organic fractions were washed with brine, dried (MgS04), and the solvent removed in vacuo to afford the title compound: RT = 4.77 min; mlz (ES+) = 527.2 [M+ H] .
Preparation 177: 5-Bromo-2-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy] nicotinonitrile
Figure imgf000109_0001
To a solution of [(l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]methanol (Preparation 1, 272mg, 1.20mmol) in anhydrous THF (5mL), under argon, was added 5- bromo-2-hydroxynicotinonitrile (200mg, l .Olmmol), followed by triphenylphosphine (477mg, 1.82mmol). The resulting suspension was cooled to 0°C for 20 min and then TBAD (419mg, 1.82mmol) was added, portion- wise. After addition, the reaction was stirred for 20 min at 0°C and then allowed to warm to r.t. and stirred for a further 16 h. Removal of the solvent in vacuo and purification by column chromatography (IH:EtOAc, 90: 10) afforded the title compound: RT = 4.18 min; mlz (ES+) = 406.1, 408.0 [M+ H]+.
Preparation 178: (4-Hydroxymethyl-piperidin-l-yl)-(3-isopropyl
[l,2,4]oxadiazol-5-yl)-methanone
Figure imgf000109_0002
To a solution of 3-isopropyl-5-trichloromethyl-[l,2,4]oxadiazole (500mg, 2.0mmol) in IPA (lOmL) was added piperidin-4-yl-methanol (380mg, 3.3mmol) and the resulting reaction mixture was heated at 50°C for 16 h, followed by heating at 90°C for 5 h. Water (0.5mL) was added and heating at 90°C was continued for 16 h. The reaction mixture was purified by preparative HPLC to afford the title compound: RT = 2.65; mlz (ES+) = 254.11 [M+ H]+. Preparation 179: [(3R,4S)-l-{5-[l-(3-Isopropyl-[l,2,4]oxadiazole-5-carbonyl)-piperidin- 4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid terf-butyl ester
Figure imgf000110_0001
To a solution of (4-hydroxyrnethyl-piperidin-l-yl)-(3-isopropyl-[l,2,4]oxadiazol-5- yl)-methanone (Preparation 178, 36mg, 0.14mmol) in DCM (lmL) was added
triethylamine (40μί, 0.30mmol) and methanesulfonyl chloride (20uL, 0.20mmol) and the resulting reaction mixture was stirred at r.t. for 2 h before washing with 2M aqueous HCl and concentrating in vacuo to afford methanesulfonic acid l-(3-isopropyl-[l,2,4]oxadiazole-5- carbonyl)-piperidin-4-ylmethyl ester. A solution of [(3i?,4S)-4-(2,4,5-trifluorophenyl)-l-(5- hydroxypyrimidin-2-yl)pyrrolidin-3-yl]carbamic acid fert-butyl ester (Preparation 88, 50mg, 0.12mmol) in DMF (lmL) and potassium carbonate (50mg, 0.40mmol)_was added and the resulting reaction mixture stirred at 80°C for 16 h. The reaction mixture was cooled to r.t. and partitioned between DCM and water. The organics were separated, concentrated in vacuo and purified by preparative HPLC to afford the title compound: RT = 4.50 min; mlz
Figure imgf000110_0002
Preparation 180: [(3R,45)-l-{5-[l-(3-Methyl-butyryl)-piperidin-4-ylmethoxy]- pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester
Figure imgf000110_0003
To a solution of l-(4-hydroxymethyl-piperidin-l-yl)-3-methyl-butan-l-one (28mg, 0.14mmol) in DCM (lmL) was added triethylamine (40uL, 0.3mmol) and methanesulfonyl chloride (20uL, 0.2mmol) and the resulting reaction mixture was shaken at r.t. for 2 h. The reaction mixture was washed with 1M aqueous HCl and the organics concentrated in vacuo to afford methanesulfonic acid l-(3-methyl-butyryl)-piperidin-4-ylmethyl ester. A solution of [(3i?,45)-4-(2,4,5-trifluorophenyl)-l-(5-hydroxypyrimidin-2-yl)pyrroli acid tert-butyl ester (Preparation 88, 50mg, 0.12mmol) in DMF (lmL) and potassium carbonate (50mg, 0.40mmol)_was added and the resulting reaction mixture stirred at 80°C for 16 h. The reaction mixture was cooled to r.t. and partitioned between DCM and water. The organics were separated, concentrated in vacuo and purified by preparative HPLC to afford the title compound: RT = 4.27 min; mlz (ES+) = 592.35 [M+ H]+.
Preparation 181: 4-((R)-l-Hydroxy-ethyl)-piperidine-l-carboxylic acid benzyl ester
Figure imgf000111_0001
To a solution of (i?)-l-piperidin-4-yl-ethanol acetate (35g, 185mmol) in DCM (300mL) was added sodium carbonate (58.8g, 555mmol) and water (280mL), followed by the dropwise addition of benzylchloro formate (25.1mL, 176mmol) and the resulting reaction mixture was stirred at r.t. for 16 h . The aqueous was separated and extracted with DCM (2 x) and the combined organics were dried (MgS04), filtered and concentrated in vacuo.
Purification by column chromatography (EtO Ac :Heptane, 3: 1 to 1 :0) afforded the title compound: RT = 0.70 min; mlz (ES+) = 264.1 [M+ H]+ (LCMS -method 2).
Preparation 182: 4-((R)-l-Methanesulfonyloxy-ethyl)-piperidine-l-carboxylic acid benzyl ester
Figure imgf000111_0002
To a solution of 4-((i?)-l-hydroxy-ethyl)-piperidine-l-carboxylic acid benzyl ester
(Preparation 181, 21.3g, 80.7mmol) in DCM (250mL) at 0°C was added triethylamine
(17.9mL, 129mmol) and the resulting reaction mixture stirred at 0°C for 0.5 h. Methane sulfonyl chloride (8.09mL, 105mmol) was added and the resulting reaction mixture was stirred at 0°C for 2 h then at r.t. for 2 h prior to the addition of water (300mL) and DCM
(lOOmL). The layers were separated and the aqueous extracted with DCM (2 x 350mL). The combined organics were washed with brine, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromatography (EtOAc:Heptane, 2: 1) afforded the title compound: RT = 2.68 min; mlz (ES+) = 342.1 [M+ H]+ (LCMS -method 4). Preparation 183: 4-[(S)-l-(2-Chloro-pyrimidin-5-yloxy)-ethyl]-piperidine-l-carboxylic acid benzyl ester
Figure imgf000112_0001
To a solution of 4-((i?)-l-methanesulfonyloxy-ethyl)-piperidine-l-carboxylic acid benzyl ester (Preparation 182, 27.6g, 80.8mmol) in DMA (800mL) was added 2-chloro- pyrimidin-5-ol (10.9g, 130mmol) and cesium fluoride (12.7g, 83.4mmol) and the resulting reaction mixture stirred at 60°C for 96 h. Further cesium fluoride (7.50g, 49.7mmol) was added and stirring at 60°C continued for 72 h. Upon cooling, the reaction mixture was poured into water (1500mL) and diluted with EtOAc (lOOOmL) and brine (500mL). The layers were separated and the aqueous extracted with EtOAc (2 x 750mL). The combined organics were washed with watenbrine (1 : 1 , 4 x 500mL), dried (Na2S04), filtered and concentrated in vacuo. Purification by column chromotograpy (DCM:MeOH, 99: 1 to 97.5:2.5) followed by further purification by column chromotograpy (Heptane:EtOAc, 3: 1 to 2:1) afforded the title compound: RT = 0.87 min; mlz (ES+) = 376.1 [M+ H]+ (LCMS - method 2).
Preparation 184: 4-(l-{(S)-2-[(3R,4S)-3-tei-i-Butoxycarbonylamino-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidine-l-carboxylic acid benzyl ester
Figure imgf000112_0002
To a solution of [(tra/75)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert- butyl ester (Preparation 38, 6.4 lg, 20.3mmol) in anhydrous DMSO (50mL) under argon was added 4-[(5)-l-(2-chloro-pyrimidin-5-yloxy)-ethyl]-piperidine-l-carboxylic acid benzyl ester (Preparation 183, 6.00g, 16.0mmol) followed by DBU (2.5 lmL, 16.8mmol) and the resulting solution was stirred at 90°C for 49 h, followed by stirring at 100°C for 16 h.
Additional [(tra/75)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert- vXy\ ester (Preparation 38, 864g, 2.70mmol) was added and the resulting solution was heated at 120°C for 8 h. Further [(tra/75)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert- - I l l - butyl ester (Preparation 38, 2.0g, 6.32mmol) was added and the resulting solution was heated at 110°C for 16 h and at 140°C for 20h. The reaction mixture was poured into water (250mL) and extracted with EtOAc (2 x lOOmL). The combined organic extracts were washed with brine (2 x 50mL), dried (MgS04), filtered and concentrated in vacuo.
Purification by column chromatography (IH:EtOAc, 2: 1) afforded the title compound:
RT = 1.53 min; mlz (ES+) = 656.00 [M+ H]+ (LCMS -method 6).
Preparation 185: [(3R,4S)-l-[5-((S)-l-Piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-4-(2,4,5- trifluoro-phenyl)-pyrrolidin-3- l]-carbamic acid tert-butyl ester
Figure imgf000113_0001
To a solution of 4-(l-{(5)-2-[(3i?,45)-3-tert-butoxycarbonylamino-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidine-l-carboxylic acid benzyl ester (Preparation 184, 7.44g, 11.3mmol) in EtOH (210mL) was added a slurry of 10% Pd/C (2.1 lg, 58.6mmol) in EtOH (20mL) and the resulting mixture stirred under an atmosphere of hydrogen at r.t. for 3h and at 50°C for 2 h. Upon cooling, the reaction mixture was filtered through Celite and the residue washed with methanol. The filtrate was concentrated in vacuo to afford the title compound: RT = 0.86 min; mlz (ES+) = 522.50 [M+ H]+ (LCMS -method
6).
Preparation 186: [(3R,45)-l-(5-{(S)-l-[l-(Butane-l-sulfonyl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl] -carbamic acid tert-butyl ester
Figure imgf000113_0002
To a solution of [(3i?,45)-l-[5-((5)-l-piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-4-(2,4,5- trifluoro-phenyl)-pyrrolidin-3-yl] -carbamic acid tert-butyl ester (Preparation 185, 75mg, 0.14mmol) in DCM (5mL) was added triethylamine (30 μΐ^, 0.22 mmol) and n- butanesulfonyl chloride (27mg, 0.17 mmol) and the resulting reaction mixture stirred at r.t. for 16 h overnight. The reaction mixture was partioned between DCM (lOmL) and water (lOmL) and the organic layer separated and concentrated in vacuo. Purification by preparative HPLC afforded the title compound: RT = 1.41 min; m/z (ES+) = 642.58 [M + H] (LCMS -method 6).
Preparation 187: [(3R,45)-l-(5-{(S)-l-[l-(2-Methyl-propane-l-sulfonyl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester
Figure imgf000114_0001
The title compound was prepared from [(3i?,45)-l-[5-((5)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185) and 2-methylpropane-l-sulfonyl chloride employing the procedure outlined in Preparation 186: RT = 1.44 min; m/z (ES+) = 642.54 [M + H]+ (LCMS -method
6).
Preparation 188: [(3R,45)-l-(5-{(S)-l-[l-(Propane-2-sulfonyl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl] -carbamic acid tert-butyl ester
Figure imgf000114_0002
The title compound was prepared from [(3i?,45)-l-[5-((5)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185) and propane -2-sulfonyl chloride employing the procedure outlined in Preparation 186: RT = 1.38 min; m/z (ES+) = 628.54 [M + H]+ (LCMS -method 6). Preparation 189: Trans-3-terf-butoxycarbonylamino-4-hydroxy-pyrrolidine-l- carboxylic acid tert-butyl ester
Figure imgf000115_0001
To a solution of trans-3-amino-4-hydroxy-pyrrolidine-l-carboxylic acid tert-butyl ester (5.00g, 24.7mmol) in THF (50mL) was added triethylamine (8.00mL, 57.4mmol). The reaction mixture was cooled to 0°C and di-tert-butyldicarbonate (6.47g, 29.7mmol) was added portion wise. The resulting reaction mixture was stirred at 0°C for 15 min and at r.t. for 3 h, then diluted with DCM and washed with water and brine. The organic extract was dried (MgS04), filtered, concentrated in vacuo and triturated with IH. The resulting solid was collected by filtration to afford the title compound: 1H NMR δΗ (400MHz, DMSO): 7.09 (s, 1H), 5.23 (s, 1H), 3.95 (m, 1H), 3.71 (m, 1H), 3.42 (m, 2H), 3.08 (m, 2H), 1.41 (s, 18H).
Preparation 190: 3,6-Diaza-bicyclo[3.1.0]hexane-3,6-dicarboxylic acid di-terf-butyl ester
Figure imgf000115_0002
To a solution of trans-3-tert-butoxycarbonylamino-4-hydroxy-pyrrolidine-l- carboxylic acid tert-butyl ester (Preparation 189, 4.00g, 13.2mmol) and triethylamine (3.00mL, 21.5mmol) in THF (40mL) under an atmosphere of argon at 0°C was added methanesulfonyl chloride (l . lOmL, 14.2mmol) dropwise over 5 min.
The reaction mixture was poured into water and extracted with DCM (3 x). The combined organic extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo to afford crude trans-3-tert-butoxycarbonylamino-4-methanesulfonyloxy-pyrrolidine-l- carboxylic acid tert-butyl ester. The crude product was dissolved in THF (40mL), purged with argon and cooled to 0°C. Sodium hydride (0.53g, 13.2mmol) was added portion wise over 5 minutes and the resulting reaction mixture was poured into water and extracted with DCM. The organic extract was washed with brine, dried (MgS04), filtered and concentrated in vacuo to afford the title compound: 1H NMR δΗ (400MHz, CDC13): 4.00 (m, 2H), 3.30 (m, 2H), 3.08 (s, 2H), 1.49 (s, 9H), 1.46 (s, 9H).
Preparation 191: l-((Trans)-4-amino-pyrrolidin-3-yl)-5-fluoro-lH-pyridin-2-one
Figure imgf000116_0001
To a solution of 3,6-diaza-bicyclo[3.1.0]hexane-3,6-dicarboxylic acid di-tert-butyl ester (Preparation 190, 330mg, 1.20mmol) and 5-fluoropyridin-2(lH)-one (656mg, 5.80mmol) in NMP (3mL) was added lBuOK (521mg, 4.64mmol) and the resulting reaction mixture was heated under microwave irradiation at 100°C for 30 minutes. The reaction mixture was diluted with DCM, washed with water, 1M aqueous NaOH and brine, then passed through a phase separator. The organics were concentrated in vacuo and the crude intermediate was purified by preparative HPLC. To a solution of the intermediate in DCM (2mL) was added TFA (400
Figure imgf000116_0002
5.00mmol) and the resulting reaction mixture was shaken at r.t. for 3 h before loading onto an SCX cartridge. The cartridge was eluted with MeOH then 3.5M NH3 in MeOH, and the basic fraction collected and concentrated in vacuo to afford the title compound: 1H NMR δΗ (400MHz, CDCI3): 7.56 - 7.65 (m, 1H), 7.21 - 7.28 (m, 1H), 6.46 - 6.56 (m, 1H), 4.82 - 4.90 (m, 1H), 3.45 - 3.55 (m, 2H), 3.37 - 3.44 (m, 1H), 3.12 (dd, J=11.72, 2.73 Hz, 1H), 2.70 (dd, J=10.35, 6.05 Hz, 1H).
Preparation 192: l-((Trans)-4-amino-pyrrolidin-3-yl)-lH-pyridin-2-one
Figure imgf000116_0003
The title compound was synthesized from 3,6-diaza-bicyclo[3.1.0]hexane-3,6- dicarboxylic acid di-tert-butyl ester (Preparation 190, 330mg, 1.20mmol) and
pyrid-2-one (552mg, 5.80mmol) employing a procedure similar to that outlined in
Preparation 191: 1H NMR δΗ (400MHz, CDC13): 7.55 (dd, J=7.03, 1.95 Hz, 1 H), 7.28 -
7.37 (m, 1 H), 6.56 (d, J=8.98 Hz, 1 H), 6.10 - 6.27 (m, 1 H), 4.77 - 4.94 (m, 1 H), 3.48 - 3.58 (m, 2 H), 3.39 (dd, J=10.93, 6.64 Hz, 1 H), 3.16 (dd, J=12.11, 3.51 Hz, 1 H), 2.71 (dd, J=10.93, 6.25 Hz, 1 H). Preparation 193: l-((Trans)-4-amin -pyrrolidin-3-yl)-4-methyl-lH-pyridin-2-one
Figure imgf000117_0001
The title compound was synthesized from 3,6-diaza-bicyclo[3.1.0]hexane-3,6- dicarboxylic acid di-tert-butyl ester (Preparation 190, 330mg, 1.20mmol) and
4-methyl-2-pyridinol (633mg, 5.80mmol) employing a procedure similar to that outlined in Preparation 191: 1H NMR δΗ (400 MHz, CD3OD): 7.59 (d, J=7.07 Hz, 1 H), 6.41 (s, 1 H), 6.31 - 6.39 (m, 1 H), 4.72 - 4.84 (m, 1 H), 3.66 - 3.76 (m, 1 H), 3.41 - 3.53 (m, 2 H), 3.17 (dd, J=12.25, 5.18 Hz, 1 H), 2.78 (dd, J=l 1.78, 7.07 Hz, 1 H), 2.26 (s, 3 H) Preparation 194: l-((Trans)-4-amino-pyrrolidin-3-yl)-5-methyl-lH-pyridin-2-one
Figure imgf000117_0002
The title compound was synthesized from 3,6-diaza-bicyclo[3.1.0]hexane-3,6- dicarboxylic acid di-tert-butyl ester (Preparation 190), and
5-methyl-2-pyridinol employing a procedure similar to that outlined in Preparation 191 RT = 0.24 min; mlz (ES+) = 194.11 [M+ H]+.
Preparation 195: l-((Trans)-4-amino-pyrrolidin-3-yl)-5-fluoro-lH-pyridin-2-one
Figure imgf000117_0003
The title compound was synthesized from 3,6-diaza-bicyclo[3.1.0]hexane-3,6- dicarboxylic acid di-tert-butyl ester (Preparation 190), and
5-fluoro-2-pyridinol employing a procedure similar to that outlined in Preparation 191 = 0.20 min; mlz (ES+) = 198.09 [M+ H]+.
Preparation 196: (5)- 1- [1 -(3-Isopropyl- [1 ,2,4] oxadiazol-5-yl)piperidin-4-yl] ethanol
Figure imgf000117_0004
The title compound was synthesized from (S)-l-piperidin-4-yl ethanol (Preparation 11) employing a procedure similar to that outlined in Preparation 62: RT = 2.72 min; mlz
Figure imgf000118_0001
Preparation 197: 3-Chloro-6-{(S)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4- yl]-ethoxy}-pyridazine
Figure imgf000118_0002
To potaasium tertiary butoxide (395mg, 3.52mmol) was added a solution of (5)-l-[l- (3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethanol (843mg, 3.52mmol) in THF (20mL) and the resulting reaction mixture was stirred at r.t. for 60 min. 3,6-Dichloro-l,2- diazine (500mg, 3.4mmol) in THF (lOmL) was added and the reaction mixture was stirred at r.t. for a further 60 min, then at 60°C for 16 h. Upon cooling, the solvent was removed in vacuo and the residue was partitioned between DCM (200mL) and brine (200mL). The organics were separated, washed with brine (200mL) and concentrated in vacuo. Purification by column chromatography (IH:EtOAc; 7:3) afforded the title compound: RT = 3.72 min; mlz (ES+) = 352.2 [M+ H]+.
Preparation 198: [(3R,4S)-l-(5-Bromo-4-methoxy-pyrimidin-2-yl)-4-(2,5-difluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-but \ ester
Figure imgf000118_0003
To a solution of [(3 ?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert- butyl ester (Preparation 48, 1.49g, 5.00mmol) in DMSO (lOmL) was added DBU (748μΙ., 5.00mmol) and 5-bromo-2-chloro-4-methoxypyrimidine (1.12g, 5.00mmol) and the resulting reaction mixture was heated at 80°C for 19 h. Upon cooling, EtOAc (300mL) and brine (350mL) were added and the organic layer separated, dried (MgS04), filtered and concentrated in vacuo. Recrstallisation from MeOH (35mL) afforded the title compound: RT = 4.49 min; mlz (ES+) = 485.1, 487.1 [M+ H]+. Preparation 199: [(3R,4S)-4-(2,5-Difluoro-phenyl)-l-(5-hydroxy-4-methoxy-pyrimidin- 2-yl)-pyrrolidin-3-yl]-carbamic acid tert-but l ester
Figure imgf000119_0001
To a solution of [(3 ?,45)-l-(5-bromo-4-methoxy-pyrimidin-2-yl)-4-(2,5-difluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 198, 650mg,
1.30mmol) in THF (21mL) was added boric acid trimethyl ester (460μί, 4.00mmol), then the reaction mixture was cooled to -78°C and n-BuLi in hexane (1.6M, 1.8mL, 2.90mmol) was added. The resulting reaction mixture was stirred at -78°C for 1 h, then quenched with water and allowed to warm to r.t. The rection mixture was partitioned between EtOAc (250mL) and brine (250mL) and the organic layer separated and concentrated in vacuo. The remainder was dissolved in THF, cooled to 0°C and aqueous NaOH (2M, 1.3mL, 3.30mmol) and hydrogen peroxide (30% aqueous solution, 0.34mL, 3.30mmol) were added. The resulting reaction mixture was stirred at 0°C for 30 min, poured into EtOAc (250mL) and brine (250mL) and the organic layer separated and concentrated in vacuo. Purification by column chromatography (IH:EtOAc; 8:2 to 7:3) afforded the title compound: RT = 2.75 min; m/z (ES+) = 423.2, 487.1 [M+ H]+.
Preparation 200: ((3R,45)-4-(2,5-Difluoro-phenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)-piperidin-4-ylmethoxy]-4-methoxy-pyrimidin-2-yl}-pyrrolidin-3-yl)-carbamic acid tert-butyl ester
Figure imgf000119_0002
Methanesulfonic acid l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-ylmethyl ester (33.1mg, 109μιηο1), [(3i?,45)-4-(2,5-difluoro-phenyl)-l-(5-hydroxy-4-methoxy- pyrimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 199, 46.1mg, 109μιηο1) and potassium carbonate (45.2mg, 327μιηο1) were dissolved in DMF (l .OmL) and heated at 80°C for 10 h. The DMF was removed in vacuo, azeotroping with toluene (3 x lOmL). The remainder was dissolved in DCM (lOOmL), washed with brine (150mL) and concentrated in vacuo. Purification by column chromatography (IH:EtOAc; 7:3 to 4:6) afforded the title compound: RT = 3.77 min; mlz (ES+) = 630.3 [M+ H]+.
Preparation 201: 4-[(S)-l-(2-Chloro-pyrimidin-5-yloxy)-ethyl]-piperidine-l-carboxylic acid isopropyl ester and 4-[(S)-l-(2-Bromo-pyrimidin-5-yloxy)-ethyl]-piperidine-l- carboxylic acid isopropyl ester
Figure imgf000120_0001
4-((i?)-l-methanesulfonyloxy-ethyl)-piperidine-l-carboxylic acid isopropyl ester (2.93g, 9.99mmol), potassium carbonate (4.14g, 30.0mmol) and a mixture of 2-bromo-5- hydroxypyrimidine (682mg, 3.90mmol) and 2-chloro-5-hydroxypyrimidine (861mg, 6.25mmol) were heated in DMF (20mL) at 80°C for 16 h. EtOAc (350mL) and brine (250mL) were added to the reaction mixture and the organic layer separated, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotogrpahy (IH:EtOAc; 1 :1) afforded the title compounds as a 3:2 ratio of products: RT = 3.84 min; mlz (ES+) = 328.14, 372.09, 374.08 [M+ H]+.
Preparation 202: 4-((S)-l-{2-[(3S,4S)-3-tei"i-Butoxycarbonylamino-4-(2-oxo-piperidin-l- yl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidine-l-carboxylic acid isopropyl ester
Figure imgf000120_0002
To a solution of [(35',45)-4-(2-oxopiperidin-l-yl)pyrrolidin-3-yl]carbamic acid tert- butyl ester (Preparation 20, 70mg, 247μιηο1), 4-[(5)-l-(2-chloro-pyrimidin-5-yloxy)-ethyl]- piperidine-l-carboxylic acid isopropyl ester (Preparation 201, 49.8mg, 152μιηο1) and 4- [(5)-l-(2-bromo-pyrimidin-5-yloxy)-ethyl]-piperidine-l-carboxylic acid isopropyl ester (Preparation 201, 35mg, 95μιηο1) in DMSO (594μΕ) was added DBU (37.6mg, 247μmol) and the resulting reaction mixture was heated at 80°C for 48h. Upon cooling, the reaction mixture was poured into DCM (150mL) and brine (150mL) and the organics separated and concentrated in vacuo. Purification by Preparative HPLC afforded the title compound: RT = 3.88 min; mlz (ES+) = 575.4 [M+ H]+.
Preparation 203: 4-((S)-l-{2-[(3R,4S)-3-tei-i-Butoxycarbonylamino-4-(2,5-difluoro- phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidine-l-carboxylic acid
Figure imgf000121_0001
To a solution of 4-[(5)-l-(2-chloro-pyrimidin-5-yloxy)-ethyl]-piperidine-l-carboxylic acid benzyl ester (Preparation 83, 3.00g, 7.98mmol) and [(3R,4S)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 3.57g,
12.0mmol) in DMSO (16mL) was added DBU (1.19mL, 7.98mmol) and the resulting reaction mixture was heated at 90°C for 40 h. Upon cooling, the reaction mixture was poured into DCM (350mL), washed with brine (300mL) and concentrated in vacuo. Purification by column chrommotography (DCM:MeOH; 99: 1) afforded the title compound: RT = 1.50 min; mlz (ES+) = 638.6 [M+ H]+ (LCMS - Method 6).
Preparation 204: {(3R,45)-4-(2,5-Difluoro-phenyl)-l-[5-((5)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-pyrrolidin-3- l}-carbamic acid tert-butyl ester
Figure imgf000121_0002
To a solution of 4-((5)-l-{2-[(3i?,45)-3-fert-butoxycarbonylamino-4-(2,5-difluoro- phenyl)-pyrrolidin- 1 -yl] -pyrimidin-5 -yloxy } -ethyl)-piperidine- 1 -carboxylic acid
(Preparation 203, 5.03g, 7.89mmol) in EtOH (71mL) was added Pd/C (10%, 1.5g, 42mmol) and the resulting reaction mixture was stirred under an atmosphere of hydrogen for 1.5 h. The reaction mixture was filtered through celite, washing with MeOH, and the filtrate concentrated in vacuo to afford the title compound: RT = 0.83 min; mlz (ES+) = 504.5 [M + Hf (LCMS - Method 6).
Preparation 205: [(3R,45)-l-{5-[(S)-l-(l-Cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2-yl}- 4-(2,5-difluoro-phenyl)-pyrrolidin-3- l]-carbamic acid tert-buty\ ester
Figure imgf000122_0001
To a solution of {(3R,4S)-4-(2,5-difluoro-phenyl)-l-[5-((S)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 204, 2.00g, 3.97mmol) in DCM (lOmL) was added NaHC03 (l .OOg, 11.9mmol) in H20 (lOmL). The reaction mixture was cooled to 0°C and cyanogen bromide (463mg, 4.37mmol) in DCM (20mL) was added over 15 min. The resulting reaction mixture was stirred at 0°C for 30 min before warming to r.t. and diluting with DCM (40mL). The organic phase was separated and concentrated in vacuo to afford the title compound: RT = 1.27 min; m/z (ES ) = 529.6 [M + H]+ (LCMS - Method 6). Preparation 206: [(3R,45)-l-{5-[(S)-l-(l-Cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2-yl}- 4-(2,4,5-trifluoro-phenyl)- rrolidin-3-yl]-carbamic acid tert-butyl ester
Figure imgf000122_0002
The title compound was synthesized from [(3 ?,45)-l-[5-((5)-l-piperidin-4-yl- ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185, 1.1 lg, 2.13mmol) employing a procedure similar to that outlined in Preparation 205: RT = 1.30 min; m/z (ES+) = 547.5 [M+ H]+ (LCMS - Method 6). Preparation 207: l-Fluoro-4-methoxy-2-((£)-2-nitro-vinyl)-benzene
Figure imgf000123_0001
To a solution of 2-fluoro-5-methoxybenzaldehyde (l .OOg, 6.49mmol) in MeOH
(2mL) was added nitromethane (420 μί, 7.8mmol) and the reaction mixture was cooled to - 10°C. A solution of NaOH (272mg, 6.81mmol) in H20 (lmL) was added dropwise and the resulting reaction mixture was stirred at -10°C to -5°C for 15 min. The reaction mixture was quenched with aqueous HCl (2M, 8mL) and extracted into DCM (14mL). The organics were separated, concentrated in vacuo and acetic anhydride (1.22mL, 13.0mmol) was added to the residue prior to cooling the mixture to 0°C. 4-Dimethylaminopyridine (55.5mg, 454μιηο1) was added and the mixture was stirred at r.t. for 16 h. Saturated aqueous NaHC03 solution was added to adjust the pH to pH7 and the resulting reaction mixture was stirred at r.t. The precipitate was collected by filtration, washed with H20 and dried in vacuo. Purification by column chromatography (IH:EtOAc; 1 :0 to 9: 1) afforded the title compound: 1H NMR 5H (400MHz, CDC13): 8.02 (d, J=13.67 Hz, 1H), 7.71 (d, J=13.67 Hz, 1H), 7.06 - 7.20 (m, 1H), 6.86 - 7.06 (m, 2H), 3.84 (s, 3H).
Preparation 208: (rrans)-l-Benzyl- -(2-fluoro-5-methoxy-phenyl)-4-nitro-pyrrolidine
Figure imgf000123_0002
To a solution of l-fluoro-4-methoxy-2-((E)-2-nitro-vinyl)-benzene (Preparation 207, 330mg, 1.70mmol) in DCM (8mL) at 0°C was added TFA (26μΙ., 0.33mmol), then N- benzyl-N-methoxymethyl-N-(trimethylsilyl)methylamine (0.5 lmL, 2.0mmol) was added dropwise over 5 min and the resulting reaction mixture was stirred at 0°C for 90 min.
Purification by column chromotogrpahy (DCM:MeOH; 0:1 to 9: 1) followed by further purification by column chromatography (IH:EtOAc; 1 :0 to 3 : 1) afforded the title compound: RT = 3.03 min; mlz (ES+) = 331.27 [M+ H]+. Preparation 209 : (Trans)-4-(2-Fluoro-5-methox -phenyl)-pyrrolidin-3-ylamine
Figure imgf000124_0001
A solution of (tra/75)-l-benzyl-3-(2-fluoro-5-methoxy-phenyl)-4-nitro-pyrrolidine (130mg, 0.39mmol) ) in MeOH (5mL) was passed through an H-Cube apparatus (10% Pd/C Catcart 70, lOOpsi, 50°C) at a flow rate of ImL per min. The solvent was removed in vacuo to afford the title compound: RT = 2.80 min; mlz (ES+) = 210.98 [M+ H]+.
Preparation 210: 4-Trimethylsilanyleth nyl-lH-pyrazole
Figure imgf000124_0002
To a solution of 4-iodopyrazole (2g, lOmmol) in THF (15mL) was added
(trimethylsilyl)acetylene (7.28mL, 51.6mmol), N-ethylethanamine (15mL, 140mmol), dichlorobis(triphenylphosphine)palladium (II) (l .Og, 1.5mmol) and copper(I) iodide (0.28g, 1.5mmol). The mixture was stirred under argon at r.t. for 16 h and the solvent removed in vacuo.
The residue was dissolved in Et20 and the insoluble impurities removed by filtration. The filtrate was concentrated in vacuo, dissolved in MeOH and the insoluble impurities removed by filtration. The filtrate was concentrated in vacuo and purified by column chromatography (IH:Et20; 4: 1 to 0: 1). Further purification by column chromatography (Et20:IH; 1 :0 to 1 : 1) afforded the title compound: RT = 3.40 min; mlz (ES+) = 165.09 [M+ H]+.
Preparation 211: 4-Ethynyl-lH-pyrazole
Figure imgf000124_0003
To a solution of 4-trimethylsilanylethynyl-lH-pyrazole (Preparation 210, 400mg, 2.4mmol) in THF (3mL) was added a solution of lithium hydroxide (58mg, 2.4mmol) in H20 (0.6mL) and the resulting reaction mixture was stirred at r.t. for 16 h. The reaction mixture was adjusted to pH 7 with acetic acid and concentrated in vacuo. The residue was partitioned between DCM and H20, then the organics separated and concentrated in vacuo to afford the title compound: RT = 1.88 min; mlz (ES+) = 93.01 [M+ H]+. Preparation 212: 4-Ethyl-lH-pyrazole
Figure imgf000125_0001
A solution of 4-ethynyl-lH-pyrazole (Preparation 210, 170mg, 1.8mmol) in EtOH (18mL) was passed through an H-Cube apparatus (10% Pd/C Catcart 70, 1 bar, r.t.) at a flow rate of lmL per min. The solvent was removed in vacuo to afford the title compound: RT = 1.88 min; mlz (ES+) = 97.05 [M+ H]+.
Preparation 213: (rrans)-3-terf-Butoxycarbonylamino-4-(4-ethyl-pyrazol-l-yl)- pyrrolidine-l-carboxylic acid terf-but l ester
Figure imgf000125_0002
A mixture of 3,6-diaza-bicyclo[3.1.0]hexane-3,6-dicarboxylic acid di-tert-butyl ester (Preparation 190, 0.207g, 0.728mmol) and 4-ethyl-lH-pyrazole (Preparation 212, 140mg, 1.4mmol) in toluene (2mL) was heated at 110°C for 16 h. The reaction mixture was diluted with DCM and washed with aqueous NaOH solution (2M) and brine. The organics were dried (MgS04), filtered and concentrated in vacuo. Purification by preparative HPLC afforded the title compound: RT = 3.95 min; mlz (ES+) = 381.18 [M+ H]+.
Preparation 214: (rrans)-4-(4-Ethyl- razol-l-yl)-pyrrolidin-3-ylamine
Figure imgf000125_0003
To a solution of (tra/?5)-3-tert-butoxycarbonylamino-4-(4-ethyl-pyrazol-l-yl)- pyrrolidine- 1-carboxylic acid tert-butyl ester (Preparation 213, 79mg, 0.21mmol) in DCM (2mL) was added TFA (250 μΐ^, 3.2mmol) and the resulting reaction mixture was stirred at r.t. for 4 h. The reaction mixture was loaded onto an SCX cartridge and eluted with MeOH followed by NH3 in MeOH. The basic fractions were concentrated in vacuo to afford the title compound: 1H NMR δΗ (400 MHz, CDC13): 7.35 (s, 1H), 4.25 - 4.44 (m, 1H), 3.67 - 3.82 (m, 1H), 3.40 - 3.59 (m, 2H), 3.25 - 3.38 (m, 1H), 2.70 - 2.86 (m, 1H), 2.49 (q, J=7.55 Hz, 2H), 1.19 (t, J=7.62 Hz, 3H). Preparation 215: 5-Trichloromethyl- l,2,4]oxadiazole-3-carboxylic acid ethyl ester
Figure imgf000126_0001
To a suspension of ethyl-2-oximinooxamate (1.26g, 9.54mmol) in toluene (13mL, 120mmol) was added perchloroacetic anhydride (1.74mL, 9.54mmol) and the resulting reaction mixture was heated at 110°C for 17 h, prior to removal of the solvent in vacuo. The resisue was dissolved in EtOAc (80mL), washed with saturated aqueous NaHC03 solution (2 x 50mL) and concentrated in vacuo to afford the title compound: 1H NMR δπ (400 MHz, CDC13): 4.58 (q, J=7.29 Hz, 2 H), 1.50 (t, J=7.22 Hz, 3 H). Preparation 216: 5-[4-((S)-l-{2-[(3R,4S)-3-tei-i-Butoxycarbonylamino-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazole-3- carboxylic acid ethyl ester
Figure imgf000126_0002
A solution of [(3i?,45)-l-[5-((5)-l-piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-4-(2,4,5- trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185, 250mg, 0.48mmol) and 5-trichloromethyl-[l,2,4]oxadiazole-3-carboxylic acid ethyl ester
(Preparation 215, 186mg, 0.719mmol) in DMF (1.5mL) was heated at 50°C for 2 h. Upon cooling, the solvent was removed in vacuo and the residue partitioned between EtOAc (30mL) and H20 (20mL). The organic layer was separated, washed with brine (lOmL) and concentrated in vacuo. Purification by column chromotograpy (IH:EtOAc; 7:3 to 4:6) afforded the title compound: RT = 1.41 min; mlz (ES ) = 662.43 [M+ ] (LCMS - Method Preparation 217: [(3R,4S)-l-[5-((S)-l-{l-[3-(l-Hydroxy-l-methyl-ethyl)- [l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-3-yl]-carba
Figure imgf000127_0001
To a solution of 5-[4-((5)-l-{2-[(3i?,45)-3-tert-butoxycarbonylamino-4-(2,4,5- trifluoro-phenyl)-pyrrolidin- 1 -yl] -pyrimidin-5 -yloxy } -ethyl)-piperidin- 1 -yl] - [l,2,4]oxadiazole-3-carboxylic acid ethyl ester (Preparation 216, 171mg, 0.258mmol) in THF (4mL) at -20°C was added methylmagnesium bromide in Et20 (3M, 0.43mL,
1.29mmol) dropwise. The resulting reaction mixture was stirred at -20°C for 90 min, prior to the addition of further methylmagnesium bromide in Et20 (3M, 0.172mL, 0.516mmol). The resulting reaction mixture was stirred at -20°C for 90 min, then quenched with saturated aqueous NH4C1 solution (5mL) and partitioined between H20 (15mL) and EtOAc (25mL). The aqueous layer was separated and further extracted with EtOAc (25mL). The combined organic layers were concentrated in vacuo and purified by Preparative HPLC to afford the title compound: RT = 1.29 min; m/z (ES+) = 648.47 [M+ H]+ (LCMS - Method 6).
Preparatino 218: [ l-(3-Isopropyl- [1 2,4] oxadiazol-5-ylmethyl)-azetidin-3-yl] -methanol
Figure imgf000127_0002
To a solution of azetidin-3-yl methanol hydrochloride (0.5g, 4mmol) in DMF (5mL) was added 5-(chloromethyl)-3-isopropyl-l,2,4-oxadiazole (0.78g, 4.8mmol) and
triethylamine (1.7mL, 12mmol) and the resulting reaction mixture was stirred at 40°C for 16 h. The reaction mixture was partitioned between EtOAc and H20 and the aqueous layer was separated and extracted with EtOAc. The combined organic extracts were washed with brine and loaded onto an SCX cartridge, eluting with MeOH followed by NH3 in MeOH. The basic fractions were concentrated in vacuo and purified by preparative HPLC (basic method) to afford the title compound: 1H NMR δΗ (400MHz, CDC13): 3.80 (s, 2H), 3.72 (d, J=5.86 Hz, 2H), 3.42 - 3.55 (m, 2H), 3.16 - 3.27 (m, 2H), 2.94 - 3.13 (m, 1H), 2.64 - 2.74 (m, 1H), 1.30 (d, J=7.03 Hz, 6H). Preparation 219: [(3R,4S)-l-{5-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-ylmethyl)-azetidin-3- ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid terf-butyl ester
Figure imgf000128_0001
To a solution of [(3 ?,45)-4-(2,4,5-trifluorophenyl)-l-(5-hydroxypyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 88, 49mg, 0.12mmol) in THF (lmL) was added PS-PPI13 (1.52mmol/g, 119mg, 0.181mmol). The resulting reaction mixture was stirred at r.t. for 5 min prior to the addition of TBAD (31mg, 0.13mmol) in THF (0.5mL). After stirring at r.t. for a further 5 mins, a solution of [l-(3-isopropyl- [l,2,4]oxadiazol-5-ylmethyl)-azetidin-3-yl]-methanol (Preparation 218, 25mg, 0.12mmol) in THF (0.5mL) was added and the resulting reaction mixture was stirred at r.t. for 2 h. Further TBAD (31mg, 0.13mmol) and PS-PPh3 (1.52mmol/g, 119mg, 0.181mmol) were added and the resulting reaction mixture was stirred at 40°C for 120 min. Upon cooling, the reaction mixture was filtered, the resin washed with DCM and MeOH and the filtrate concentrated in vacuo. Purification by preparative HPLC afforded the title compound: RT = 3.00 min; mlz (ES+) = 604.26 [M+ H]+.
Preparation 220: (rrans)-3-terf-Butoxycarbonylamino-4-(4-methyl-pyrazol-l-yl)- pyrrolidine-l-carboxylic acid terf-but l ester
Figure imgf000128_0002
The title compound was synthesized from 3,6-diaza-bicyclo[3.1.0]hexane-3,6- dicarboxylic acid di-tert-butyl ester (Preparation 190, 0.500 g, 1.76 mmol) and 4-methyl- lH-pyrazole (0.433 g, 5.28 mmol) employing a procedure similar to that outlined in
Preparation 213: RT = 3.72 min; mlz (ES+) = 367.24 [M+ H]+. Preparation 221 : (rrans)-4-(4-Meth l-pyrazol-l-yl)-pyrrolidin-3-ylamine
Figure imgf000129_0001
The title compound was synthesized from (trans)-3-tert-butoxycarbonylamino-4-(4- methyl-pyrazol-l-yl)-pyrrolidine-l-carboxylic acid tert-butyl ester (Preparation 220, lOOmg, 0.273mmol) employing a procedure similar to that outlined in Preparation 214: RT = 0.36 min; mlz (ES+) = 167.11 [M+ H]+.
Preparation 222: 2,2-Difluoro-N-hydrox -propionamidine
Figure imgf000129_0002
To a solution of 2,2-difluoro-propionitrile (1.00g, 11.Ommol) in IMS (30mL) was added hydroxylamine (50% aqueous solution, 792mg, 13.2mmol) and the resulting reaction mixture was heated at 90°C for 16 h. Upon cooling, the solvent was removed in vacuo and the remainder purified by column chromatography (Heptane :EtO Ac; 4:1) to afford the title compound: 1H NMR δΗ (300MHz, CDC13): 1.75 (t, J=19.1 Hz, 3H).
Preparation 223: 2,2,2-Trifluoro-N-hydr xy-acetamidine
Figure imgf000129_0003
To a solution of aqueous hydroxylamine (50%, 3.9mL, 63mmol) in EtOH (80mL) in a 600mL Paar apparatus was added trifluoroacetonitrile (5g, 50mmol) at 35°C and 15 PSi. The reaction mixture was stirred for 45 min and further trifluoroacetonitrile (5g, 5 Ommol) was added at 35°C and 15 PSi. The resulting reaction mixture was stirred at 35°C for 16 h. The solvent was removed in vacuo and the remainder triturated with Et20 (3 x 50mL). The resulting precipitate was dried in vacuo to afford the title compound: 1H NMR 5H (400MHZ, d6-DMSO): 10.30 (s, 1H), 6.25-6.35 (bs, 1H).
Preparation 224: N-hydroxy(~2~H_5) ropionamidine
Figure imgf000129_0004
A solution of propionitrile-D5 (250mg, 4.2mmol) and aqueous hydroxylamine (50%, 0.3mL, 5.0mmol) in EtOH (5mL) was heated at 60°C for 4 h. Upon cooling, the solvent was removed in vacuo to afford the title compound: 1H NMR δΗ (400MHz, d6-DMSO): 8.67 (s, 1H), 5.20-5.30 (bs, 1H).
Preparation 225: N-hydroxy(3,3,3— 2~H ropionamidine
Figure imgf000130_0001
A solution of (3,3,3-~2~H_3)propionitrile (240mg, 4.2mmol), and aqueous hydroxylamine (50%, 0.3mL, 5.0mmol) in EtOH (5mL) was heated at 60°C for 5 h. Further aqueous hydroxylamine (50%>, 0.13mL, 2.1mmol) was added and the resulting reaction mixture stirred at 60°C for 5 h. Upon cooling, the solvent was removed in vacuo to afford the title compound: 1H NMR δΗ (400MHz, CDC13): 8.10-8.60 (bs, 1H), 4.50-4.80 (bs, 1H), 2.17 (s, 2H). Preparation 226: [(3R,45)-4-(2,5-Difluoro-phenyl)-l-(5-{(5)-l-[l-(N- hydroxycarbamimidoyl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]- carbamic acid terf-butyl ester
Figure imgf000130_0002
A solution of [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2-yl}- 4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid fert-butyl ester (Preparation 205, lOOmg, 0.2mmol) and aqueous hydroxylamine (50%>, 13μΕ, 0.22mmol) in EtOH (4mL) was heated at 60°C for 3 h. Removal of the solvent in vacuo, azeotroping with Et20, afforded the title compound: RT = 2.85 min; mlz (ES+) = 562.26 [M+ H]+. Preparation 227: [(3R,4S)-l-(5-{(S)-l-[l-(N-Hydroxycarbamimidoyl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester
Figure imgf000131_0001
The title compound was synthesised from [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4- yl)-ethoxy]-pyrimidin-2-yl} -4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester (Preparation 206, lOOmg, 0.2mmol) employing a procedure similar to that outlined in Preparation 226: RT = 2.93 min; mlz (ES+) = 580.19 [M+ H]+. Preparation 228: [(3R,45)-4-(2,5-Difluoro-phenyl)-l-(5-{(S)-l-[l-(4-methyl-thiazol-2- yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester
Figure imgf000131_0002
A solution of {(3i?,45)-4-(2,5-difluoro-phenyl)-l-[5-((5)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 204, 30mg, 0.06mmol) and 2-chloro-4-methyl-l,3-thiazole (80mg, 0.6mmol) in DCM (2mL) were heated at 120°C for 30 min under microwave irradiation, followed by further heating at 140°C for 60 min under microwave irradiation. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH (2 x 4mL), followed by NH3 in MeOH (3.5M, 2 x 4mL). The basic fractions were concentrated in vacuo and purified by MDP (acidic method) to afford the title compound: RT = 1.05 min; mlz (ES+) = 601.51 [M+ H]+. Preparation 229: [(3R,4S)-4-(2,5-Difluoro-phenyl)-l-(5-{(S)-l-[l-(lH-tetrazol-5-yl)- piperidin-4-yl]-ethoxy}-p rimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester
Figure imgf000132_0001
To a solution of [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2- yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 205, 200mg, 0.4mmol) in DMF (4mL) was added ammonium chloride (30mg, 0.57mmol) then sodium azide (37mg, 0.57mmol) and the resulting reaction mixture was stirred at r.t. for 20 min and at 100°C for 16 h. Upon cooling, the reaction mixture was partitioned between EtOAc (40mL) and water (40mL). The organics were separated, washed with bine (30mL), dried (MgS04), filtered and concentrated in vacuo. Trituration with Et20 and removal of the solvent in vacuo afforded the title compound: RT = 3.75 min; m/z (ES+) = 572.20 [M+ H] .
Preparation 230: [(3R,45)-4-(2,5-Difluoro-phenyl)-l-(5-{(S)-l-[l-(3-ethyl-lH-tetrazol-5- yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-carbamicacid tert-butyl ester
Figure imgf000132_0002
To a solution of [(3i?,45)-4-(2,5-difluoro-phenyl)-l-(5-{(5)-l-[l-(lH-tetrazol-5-yl)- piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester
(Preparation 229, 160mg, 0.28mmol) in DMF (0.5mL) and acetone (2.5mL) at r.t. was added potassium carbonate (120mg, 0.84mmol), followed by portionwise addition of iodoethane (45μί, 0.56mmol) and the resulting reaction mixture was heated at 50°C for 3.5 h. The solvent was removed in vacuo and the remainder partitioned between EtOAc (40mL) and aqueous NaOH solution (1M, 40mL). The organics were separated, washed with brine (40mL), dried (MgS04), filtered and concentrated in vacuo. The remainder was purified by preparative HPLC and added to an SCX cartridge, eluting with MeOH (3 x 4mL), followed by NH3 in MeOH (3.5M, 3 x 4mL). The basic fractions were concentrated in vacuo to afford the title compound: RT = 4.49 min; mlz (ES ) = 600.19 [M+ H] .
Preparation 231: [(3R,45)-l-(5-{(S)-l-[l-(2H-Tetrazol-5-yl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl] -carbamic acid tert-butyl ester
Figure imgf000133_0001
The title compound was synthesized from [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4- yl)-ethoxy]-pyrimidin-2-yl} -4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester (Preparation 206, 200mg, 0.4mmol) employing a procedure similar to that outlined in Preparation 229: RT = 3.82 min; mlz (ES+) = 590.19 [M+ H]+.
Preparation 232: [(3R,45)-l-(5-{(S)-l-[l-(2-Ethyl-2H-tetrazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl] -carbamic acid tert- butyl ester
Figure imgf000133_0002
The title compound was synthesised from [(3i?,45)-l-(5-{(5)-l-[l-(2H-tetrazol-5-yl)- piperidin-4-yl]-ethoxy} -pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 231, 200mg, 0.3mmol) employing a procedure similar to that outlined in Preparation 230: RT = 4.49 min; mlz (ES+) = 618.19 [M+ H]+.
Preparation 233: [l-(6-Ethyl-pyridazin-3-yl)-piperidin-4-yl]-methanol
Figure imgf000133_0003
3-Bromo-6-ethylpyridazine (300mg, 2mmol) and 4-(hydroxymethyl)piperidine (650mg, 5.6mmol) were heated together at 100°C for 20 min under microwave irradiation. The reaction mixture was diluted with DCM (lOmL), washed with water (lOmL) and the organic layer loaded onto an SCX cartridge, eluting with MeOH, followed by N¾ in MeOH (3.5M). The basic fractions were concentrated in vacuo and purified by column
chromotogrpahy (DCM:MeOH; 1 :0 to 95:5) to afford the title compound: RT = 1.63 min; mlz (ES+) = 222.08 [M+ H]+.
Preparation 234: [(3R,4S)-l-{5-[l-(6-Ethyl-pyridazin-3-yl)-piperidin-4-ylmethoxy]- pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester
Figure imgf000134_0001
To a solution of [(3 ?,45)-4-(2,4,5-trifluorophenyl)- 1 -(5-hydroxypyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 88, 50mg, 0.122mmol) in THF (ImL) was added PS-PPh3 (1.52 mmol/g, 120mg, 0.183mmol), followed by TBAD (31mg, 0.134mmol) in THF (0.5mL) and the resulting reaction mixture was stirred at r.t. for 5 min. A solution of [l-(6-ethyl-pyridazin-3-yl)-piperidin-4-yl] -methanol (Preparation 233, 27mg, 0.12mmol) in THF (0.5mL) was added and the resulting reaction mixture stirred at r.t. for 2 h. Further TBAD (31mg, 0.134mmol) and PS-PPh3 (1.52 mmol/g, 120mg, 0.183mmol) were added and the reaction mixture stirred at 40°C for 2 h. The reaction mixture was filtered and the resin washed with MeOH. The filtrate was concentrated in vacuo and purified by preparative HPLC to afford the title compound: RT = 3.13 min; mlz (ES ) =
Figure imgf000134_0002
Preparation 235: [(3R,4S)-l-{5-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-3- ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester hydrochlori
Figure imgf000134_0003
To a solution of [l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-3-yl]methanol (Preparation 111, 32mg, 0.140mmol) in DCM (lmL) was added triethylamine (40μί, 0.3mmol) and methanesulfonyl chloride (20μί, 0.2mmol) and the resulting reaction mixture was shaken at r.t. for 2 h. The reaction mixture was washed with aqueous HC1 (1M) and concentrated in vacuo. A solution of [(3 ?,4S)-4-(2,4,5-trifluorophenyl)-l-(5- hydroxypyrimidin-2-yl)pyrrolidin-3-yl]carbamic acid fert-butyl ester (Preparation 88, 50mg, 0.122mmol) in DMF (lmL) and potassium carbonate (50mg, 0.4mmol) were added and the resulting reaction mixture stirred at 80°C for 16 h. The reaction mixture was partitioned between DCM and water and the organics separated and concentrated in vacuo. Purification by preparative HPLC afforded the title compound: RT = 4.53 min; mlz (ES ) = 618.33 [ + H]+.
Preparation 236: (rrans)-l-Benzyl-3-nitro-4- henyl-pyrrolidine
Figure imgf000135_0001
To a solution of ((E)-2-nitro-vinyl)-benzene (lg, 7.0mmol) in DCM (lOmL) at 0°C was added TFA (0. lOmL, 1.3mmol), followed by dropwise addition of N-(methoxymethyl)- N-(trimethylsilylmethyl)benzylamine (2. OmL, 8.0mmol). The resulting reaction mixture was stirred at 0°C for 1.5 h and at r.t. for 1 h. Further N-(methoxymethyl)-N- (trimethylsilylmethyl)benzylamine (0.8mL, 3.2mmol) and TFA (O.lmL, 1.3mmol) were added and the reaction mixture stirred at 0°C for 30 min. The reaction mixture was diluted with DCM (40mL) and water (5 OmL) and the organic layer separated and concentrated in vacuo. Purification by column chromotogrpahy (IF EtOAc, 1 :0 to 3 : 1) afforded the title compound: RT = 2.57 min; mlz (ES+) = 283.13 [M+ H]+.
Preparation 237: (rrans)-4-Phenyl-pyrrolidin-3- l-ammonium
Figure imgf000135_0002
(7>a/?5)-l-Benzyl-3-nitro-4-phenyl-pyrrolidine (Preparation 236, 275mg, 0.974mmol) was passed through an H-Cube apparatus (10% Pd/C, 100 bar, 75°C) at a flow rate of lmL per min. The reaction mixture was loaded onto an SCX cartridge eluting with MeOH followed by NH3 in MeOH (3.5M). The basic fractions were concentrated in vacuo to afford the title compound: RT = 2.98 min; mlz (ES+) = 163.01 [M+ H]+.
Preparation 238 : 5-Bromo-2-{(S)- 1- [ l-(3-isopropyl- [ 1 ,2,4] oxadiazol-5-yl)-piperidin-4- yl]-ethoxy}-pyrimidine
Figure imgf000136_0001
To a solution of (i?)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethanol (Preparation 62, 0.50g, 2.1mmol), 5-bromo-pyrimidin-2-ol (0.36g, 2.1mmol) and PPh3 (0.66g, 2.5mmol) in THF (20mL) was added DEAD (0.39mL, 2.5mmol) dropwise over 15 min and the resulting reaction mixture was stirred at r.t. for 16h. Further PPh3 (0.33g,
1.25mmol), (R)- 1 -[ 1 -(3-isopropyl-[ 1 ,2,4]oxadiazol-5-yl)piperidin-4-yl]ethanol (Preparation 62, 0.20g, 0.84mmol) and DEAD (0.20mL, 0.43mmol) were added and the resulting reaction mixture was stirred at r.t. for 72 h. The solvent was removed in vacuo and the residue purified by preparative HPLC to afford the title compound: RT = 3.97 min; mlz (ES ) = 396.1, 398.1 [ + H]+.
Preparation 239: (£)-3-(4-Methyl-p ridin-2-yl)-acrylic acid ethyl ester
Figure imgf000136_0002
Triethylphosphonoacetate (5.38g, 24.0mmol) was added dropwise to a solution of sodium hydride (l .lg, 26.0mmol) in THF (120mL) at 0°C and the resulting reaction mixture was stirred at 0°C for 30 min. A solution of 4-methyl-pyridine-2-carbaldehyde (1.5g, 12mmol) in THF (30mL) was added dropwise and the resulting reaction mixture was allowed to warm to r.t. over 1.5 h. The reaction mixture was poured into water and extracted with EtOAc (3 x). The combined organic extracts were dried (MgS04), filtered and concentrated in vacuo. The remainder was purified by column chromatography
(Heptane:EtOAc; 2: 1) to afford the title compound: RT = 2.49 min; mlz (ES+) =192.1 [M + H]+ (LCMS - Method 4). Preparation 240: (rrans)-l-Benzyl-4-(4-methyl-pyridin-2-yl)-pyrrolidine-3-carboxylic acid ethyl ester
Figure imgf000137_0001
To a solution of (E)-3-(4-methyl-pyridin-2-yl)-acrylic acid ethyl ester (Preparation 239, 1.97g, 10.3mmol) and N-(methoxyrnethyl)-N-(trimethylsilylmethyl)benzylamine (3.0mL, 12.4mmol) in DCM (8mL) at 0°C was added TFA (29mL, 1.03mmol) dropwise and the resulting reaction mixture was stirred at 0°C for 1 h and at r.t. for 16 h. The reaction mixture was poured into saturated aqueous NaHC03 solution and extracted with DCM (3 x). The combined organic extracts were dried (MgS04), filtered and concentrated in vacuo. Purification by column chromatography (EtOAc:Heptane; 3: 1 to 1 :0) afforded the title compound: RT = 0.86 min; mlz (ES+) =325.1 [M+ H]+ (LCMS - Method 2).
Preparation 241 : (rrans)-l-Benzyl-4-(4-methyl-pyridin-2-yl)-pyrrolidine-3-carboxylic acid
Figure imgf000137_0002
To a solution of (tra/?5)-l-benzyl-4-(4-methyl-pyridin-2-yl)-pyrrolidine-3-carboxylic acid ethyl ester (Preparation 240, 3.26g, 10.06mmol) in MeOH (30mL) was added a solution of NaOH (680mg, 12.0mmol) in water (5mL) and the resulting reaction mixture was stirred at r.t. Aqueous HC1 (6M, 2.8mL) was added and the solvent removed in vacuo, azeotroping with toluene, to afford the title compound: RT = 2.26 min; mlz (ES ) =297.1 [M + H]+ (LCMS - Method 4).
Preparation 242: [(3R,4S)-l-Benzyl-4-(4-methyl-pyridin-2-yl)-pyrrolidin-3-yl]- carbamic acid tert-buty\ ester
Figure imgf000137_0003
To a solution of (tra/75)-l-benzyl-4-(4-methyl-pyridin-2-yl)-pyrrolidine-3-carboxylic acid (Preparation 241, 2.96g, lOmmol) in 1,4-dioxane (40mL) was added triethylamine (2.1mL, 15mmol) and the resulting reaction mixture was cooled to 0°C. Diphenylphosphoryl azide (2.59mL, 12mmol) was added and the reaction mixture stirred at 0°C for 45 mins prior to the addition of tertiary butanol (5mL). After stirring at 0°C for 5 mins, the reaction mixture was warmed to r.t. and stirred at r.t. for 2 h and at 85 °C for 16 h. The reaction mixture was diluted with EtOAc, washed with saturated aqueous sodium hydrogen carbonate solution, dried (MgS04), filtered and concentrated in vacuo. The oil was triturated with heptane and the solid removed by filtration. The filtrate was purified by column
chromatography (EtOAc:Heptane; 5 : 1 to 1 :0) and the crude product triturated with heptane to afford [(trans)-l -benzyl -4-(4-methyl-pyridin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester. Purification by chiral HPLC (MTBE:MeOH:BA; 98:2:0.1 , 15ml/min, 265nm, RT = 5.1 min) afforded the title compound: RT = 3.03 min; mlz (ES+) =368.2 [M+ H]+ (LCMS - Method 4).
Preparation 243: [(3R, 4S)-4-(4-Methyl-pyridin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-buty\ ester
Figure imgf000138_0001
To a solution of [(3 ?,45)-l-benzyl-4-(4-methyl-pyridin-2-yl)-pyrrolidin-3-yl]- carbamic acid tert-butyl ester (Preparation 242, 200mg, 0.544mmol) in EtOH (12mL) and AcOH (lmL) was added palladium hydroxide (7.6mg, 54μιηο1) and the resulting reaction mixture was stirred under an atmosphere of hydrogen for 16h. The reaction mixture was filtered and the filtrate concentrated in vacuo. The residue was partitioned between DCM (20mL) and saturated aqueous sodium bicarbonate solution (20mL). The organic phase was washed with brine, dried (MgS04), filtered and concentrated in vacuo. Purification by preparative HPLC (basic method) afforded the title compound: RT = 1.90 min; mlz (ES ) =278.11 [Μ+ ηγ. Preparation 244 : 5-Bromo-2-{(S)- 1- [ l-(3-isopropyl- [ 1 ,2,4] oxadiazol-5-yl)-piperidin-4- yl]-ethoxy}-pyridine
Figure imgf000139_0001
To a solution of (i?)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethanol (Preparation 62, 400mg, 2mmol), 5-bromo-2-hydroxypyridine (290mg, 1.7mmol) and PPI13 (660mg, 2.5mmol) in THF at 0°C was added a solution of TBAD (580mg, 2.5mmol) in THF (0.5mL) in 3 portions over 20 min. The resulting reaction mixture was stirred at r.t. for 16 h and the solvent removed in vacuo. The residue was dissolved in EtOAc (200mL), washed with saturated aqueous NaHCC"3 solution (2 x 150mL) and brine (150mL), dried (MgSC^), filtered and concentrated in vacuo. Purification by preparative HPLC afforded the title compound: RT = 4.50 min; mlz (ES+) =395.1, 397.1 [M+ H]+.
Preparation 245 : 5-Bromo-2-{(5)- 1- [ l-(3-isopropyl- [ 1 ,2,4] oxadiazol-5-yl)-piperidin-4- yl]-ethoxy}-4-methyl-pyridine
Figure imgf000139_0002
The title compound was synthesized from ( ?)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl]ethanol (Preparation 62, 400mg, 2mmol) and 5-bromo-2-hydroxy-4- methylpyridine (310mg, 1.7mmol) employing a procedure similar to that outlined in
Preparation 244: RT = 4.72 min; mlz (ES+) =409.1, 411.1 [M+ H]+.
Preparation 246: [(3R,4R)-4-(2,5-Difluoro-phenyl)-l-(5-{(5)-l-[l-(3-ethyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-piperidin-3-yl]-carbamic acid tert-buty\ ester
Figure imgf000139_0003
To a solution of [(3 ?,4i?)-4-(2,5-difluorophenyl)piperidin-3-yl]carbamic acid tert- butyl ester (Preparation 9, 60mg, 0.192mmol) and 2-chloro-5-{(5)-l-[l-(3-ethyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethoxy}pyrimidine (Preparation 102, 54.1mg,
0.160mmol) in DMSO (0.32mL) was added DBU (24.4mg, 160μηιο1) and the resulting reaction mixture was stirred at 90°C for 144 h. Upon cooling, the reaction mixture was poured into DCM (175mL), washed with citric acid (1M, 2 x 150mL) and brine (200mL), dried (MgS04), filtered and concentrated in vacuo to afford the title compound: RT = 1.46 min; mlz (ES+) = 614.5 [M+ H]+.
Preparation 247: [(3R,45)-l-(5-{(S)-l-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4- yl] -ethoxy}-pyrimidin-2-yl)-4-(4-methyl-pyridin-2-yl)-pyrrolidin-3-yl] -carbamic acid tert butyl ester
Figure imgf000140_0001
A solution of [(3 ?,45)-4-(4-methyl-pyridin-2-yl)-pyrrolidin-3-yl] -carbamic acid tert- butyl ester (Preparation 243, 55.0mg, 0.198mmol), 2-chloro-5-{(5)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethoxy}pyrimidine (Preparation 63, 78.6mg,
0.198mmol) and DBU (29.6μΙ., 0.198mmol) in DMSO (4mL) was heated at 80°C for 96 h. Upon cooling, the reaction mixture was diluted with chloroform (50mL) and the organic phase washed with brine (50mL) and concentrated in vacuo. Purification by preparative HPLC (basic method) afforded the title compound: RT = 3.23 min; mlz (ES+) = 593.61 [M +
H]+.
Preparation 248 : 6-Bromo-3- [ l-(3-isopropyl- [1 ,2,4] oxadiazol-5-yl)-piperidin-4- ylmethoxy]-2-methyl-pyridine
Figure imgf000140_0002
To a solution of 6-bromo-2-methyl-pyridin-3-ol (250mg, 1.33mmol), [(l-(3- isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]methanol (Preparation 1, 314mg, 1.40mmol) and PPh3 (384mg, 1.46mmol) in THF was added TBAD (337mg, 1.46mmol) in three portions over 20 min and the resulting reaction mixture was stirred at r.t. for 96 days.
The solvent was removed in vacuo and the remainder dissolved in EtOAc (50mL). The solution was washed with aqueous HC1 solution (0.1M, 25mL), water (25mL) and brine (50mL), dried (MgS04), filtered and concentrated in vacuo. The remainder was purified by preparative HPLC to afford the title compound: RT = 4.03 min; mlz (ES+) = 395.10, 397.09 [M+ H]+.
Preparation 249: ((3R,45)-4-(2,5-Difluoro-phenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)-piperidin-4-ylmethoxy]-6-methyl-pyridin-2-yl}-pyrrolidin-3-yl)-carbamic acid terf-butyl ester
Figure imgf000141_0001
[(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester
(Preparation 48, 272mg, 0.911mmol), 6-bromo-3-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-ylmethoxy]-2-methyl-pyridine (Preparation 248, 300mg, 0.759mmol), biphenyl-2-yl(di-tert-butyl)phosphine (45.3mg, 0.152mmol) and potassium tertiary butoxide (106mg, 0.949mmol) in toluene (lOmL) were heated in a sealed tube at 150°C for 16 h. Upon cooling, the reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M). The fractions were concentrated in vacuo and purified by preparative HPLC (basic method) to afford the title compound: RT = 3.83 min; mlz (ES ) =
Figure imgf000141_0002
Preparation 250: l-Benzyl-4-hydrox methyl-piperidin
Figure imgf000141_0003
To sodium borohydride (50g, 1.31mmol) at 0°C was added a solution of l-benzyl-3- oxo-piperidine-4-carboxylic acid ethyl ester hydrochloride (20g, 67.2mmol) in MeOH (350mL) with rapid overhead stirring. The resulting reaction mixture was stirred at r.t. for 16 h. Water (300mL) was added and stirring was continued for 4 h, prior to removal of the solvent in vacuo. The remainder was diluted with brine, extracted with EtOAc (4 x) and the combined organic extracts dried (MgS04), filtered through celite and concentrated in vacuo to afford the title compound: RT = 2.12, 2.27 min; mlz (ES+) = 222.1 [M+ H]+ (LCMS Method - 4). Preparation 251: Acetic acid (c/s)-4-acetoxymethyl-l-benzyl-piperidin-3-yl ester
Figure imgf000142_0001
To a solution of l-benzyl-4-hydroxymethyl-piperidin-3-ol (Preparation 250, in pyridine (140mL) was added acetic anhydride (70mL) and the resulting reaction mixture stirred at r.t. for 24 h. The solvent was removed in vacuo, azeotroping with toluene (3 x ), and the remainder purified by column chromatography (EtOAc: Heptane; 3:2 to 1 :0) to afford the title compound: RT = 2.72 min; mlz (ES+) = 306.1 [M+ H]+ (LCMS Method - 4).
Preparation 252: Acetic acid (frans)-4-acetoxymethyl-l-benzyl-piperidin-3-yl ester
Figure imgf000142_0002
The title compound was synthesised employing the method outlined in Preparation 251: RT = 2.82 min; mlz (ES+) = 306.1 [M+ H]+ (LCMS Method - 4).
Preparation 253: Acetic acid (ci' -4-acetoxymethyl-piperidin-3-yl ester trifluoroacetate
Figure imgf000142_0003
A solution of acetic acid (czs)-4-acetoxymethyl-l-benzyl-piperidin-3-yl ester
(Preparation 251, 2.00g, 6.55mmol) in EtOH (300mL) and TFA (3mL) was passed through an H-Cube apparatus (10% pd/C Catcart 70, 50 atmospheres, 70°C) at a flow rate of ImL per min. The solvent was removed in vacuo, azeotroping from toluene (2 x), to afford the title compound: RT = 1.42 min; mlz (ES+) = 216.14 [M+ H]+. Preparation 254: Acetic acid (frans)-4-acetoxymethyl-piperidin-3-yl ester
trifluoroacetate
Figure imgf000143_0001
The title compound was synthesized from acetic acid (trans)-4-acetoxymethyl-l- benzyl-piperidin-3-yl ester (Preparation 252, 2.00g, 6.55mmol) employing a procedure similar to that outlined in Preparation 253: RT = 1.52 min; mlz (ES+) = 216.11 [M+ H]
Preparation 255: (cis)-l-(5-Chlor -pyrimidin-2-yl)-4-hydroxymethyl-piperidin-3-ol
Figure imgf000143_0002
Acetic acid (czs)-4-acetoxymethyl-piperidin-3-yl ester trifluoroacetate (Preparation 253, 0.690g, 2.10mmol), 2,5-dichloropyrimidine (0.375g, 2.51mmol), potassium carbonate (0.724g, 5.24mmol), NMP (8mL) and water (4mL, 200mmol) were combined in a microwave tube and stirred at r.t. for 5 min. The reaction mixture was heated at 100°C under microwave irradiation for 1 min, then the pressure released. The reaction mixture was further heated at 150°C for 10 min, under microwave irradiation, followed by a further 20 min, releasing the pressure inbetween. The reaction mixture was poured into water (300mL) and extracted with Et20 (4 x 200mL). The combined organic extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo. The resulting oil was triturated with EtOAc and IH and the solid collected by filtration to afford the title compound: RT = 2.43 min; mlz (ES+) = 244.08 [M+ H]+.
Preparation 256: (irans)-l-(5-Chloro- rimidin-2-yl)-4-hydroxymethyl-piperidin-3-ol
Figure imgf000143_0003
The title compound was synthesised from acetic acid (tra/?s)-4-acetoxymethyl- piperidin-3-yl ester trifluoroacetate (Preparation 254, 0.130g, 0.395mmol), employing a procedure similar to that outlined in Preparation 255: RT = 2.57 min; mlz (ES ) = 244.11 [M+ H]+. Preparation 257: (cis)-l-(5-Chloro-pyrimidin-2-yl)-4-(2-chloro-pyrimidin-5- yloxymethyl)-piperidin-3-ol and (cis)-l-(5-bromo-pyrimidin-2-yl)-4-(2-chloro- pyrimidin-5- loxymethyl)-piperidin-3-ol
Figure imgf000144_0001
To a solution of (cz5)-l-(5-chloro-pyrimidin-2-yl)-4-hydroxyrnethyl-piperidin-3-ol (Preparation 255, 0.449g, 1.84mmol), 2-chloropyrimidin-5-ol (0.144g, l . lOmmol), 2- bromopyrimidin-5-ol (0.129g, 0.737mmol) and PPI13 (0.725g, 2.76mmol) in THF (35mL) was added TBAD (0.467g, 2.03mmol) and the resulting reaction mixture was stirred at 50°C for 3h. The solvent was removed in vacuo and the remainder partitioned between EtOAc (200mL) and water (200mL). The organics were separated, washed with brine, dried
(MgS04), filtered and concentrated in vacuo. The remainder was purified by column chromatography (EtOAcTH; 1 : 1) to afford the title compounds: RT = 3.42-3.48 min; mlz (ES+) = 356.03, 399.97, 401.97 [M+ H]+.
Preparation 258: (irans)-l-(5-Chloro-pyrimidin-2-yl)-4-(2-chloro-pyrimidin-5- yloxymethyl)-piperidin-3-ol and (frans)-l-(5-bromo-pyrimidin-2-yl)-4-(2-chloro- pyrimidin-5- loxymethyl)-piperidin-3-ol
Figure imgf000144_0002
The title compounds were synthesised from (trans)- 1 -(5 -chloro-pyrimidin-2-yl)-4- hydroxymethyl-piperidin-3-ol (Preparation 256, 0.306g, 1.26mmol), employing a procedure similar to that outlined in Preparation 257: RT = 3.38-3.44 min; mlz (ES+) = 356.03, 399.99, 401.98 [M+ H] Preparation 259: [(3R,4S)-l-{5-[(3R,4S)-l-(5-Chloro-pyrimidin-2-yl)-3-hydroxy- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-buty\ ester
Figure imgf000145_0001
To a solution of (cz5)-l-(5-chloro-pyrimidin-2-yl)-4-(2-chloro-pyrimidin-5- yloxymethyl)-piperidin-3-ol (Preparation 257, 0.204g, 0.573mmol), (czV)-l-(5-bromo- pyrimidin-2-yl)-4-(2-chloro-pyrimidin-5-yloxymethyl)-piperidin-3-ol (Preparation 257, 0.136g, 0.339mmol) and [(3 ?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert- butyl ester (Preparation 48, 0.427g, 1.43mmol) in DMSO (2.5mL) was added DBU
(0.143mL, 0.956mmol) and the resulting reaction mixture was heated at 80°C in a sealed tube for 48 h. The reaction mixture was poured into water (lOOmL), extracted with EtOAc (3 x lOOmL) and the combined orgainc extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo. The remainder was purified by column chromotogrpahy (EtOAcTH; 65:35) to afford [(3^45)-l-{5-[(cz5)-l-(5-chloro-pyrimidin-2-yl)-3-hydroxy- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester. Purification by chiral HPLC (MeCN:THF; 84: 16, 15ml/min, 250nm) afforded the title compound: RT = 4.27 min; mlz (ES+) = 618.29 [M+ H]+.
Preparation 260: [(3R,45)-l-{5-[(3S,4R)-l-(5-Chloro-pyrimidin-2-yl)-3-hydroxy- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-buty\ ester
Figure imgf000145_0002
The title compound was synthesised from (cz5)-l-(5-chloro-pyrimidin-2-yl)-4-(2- chloro-pyrimidin-5-yloxymethyl)-piperidin-3-ol and (cis)- 1 -(5-bromo-pyrimidin-2-yl)-4-(2- chloro-pyrimidin-5-yloxymethyl)-piperidin-3-ol (Preparation 257) employing the procedure outlined in Preparation 259: RT = 4.34 min; mlz (ES+) = 618.29 [M+ H]+. Preparation 261: [(3R,4S)-l-{5-[(3R,4R)-l-(5-Chloro-pyrimidin-2-yl)-3-hydroxy- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-buty\ ester
Figure imgf000146_0001
[(3i?,45)-l-{5-[(tran5)-l-(5-Chloro-pyrimidin-2-yl)-3-hydroxy-piperidin-4- ylmethoxy]-pyrimidin-2-yl} -4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester was synthesised from (tra/75)-l-(5-chloro-pyrimidin-2-yl)-4-(2-chloro-pyrimidin- 5-yloxymethyl)-piperidin-3-ol and {trans)- 1 -(5-bromo-pyrimidin-2-yl)-4-(2-chloro- pyrimidin-5-yloxymethyl)-piperidin-3-ol (Preparation 258) employing the procedure outlined in Preparation 259. Purification by chiral HPLC (DCM:EtOH; 94:6, 11 ml/min, 250nm) afforded the title compound: RT = 4.28 min; mlz (ES+) = 618.28 [M+ H]+.
Preparation 262: [(3R,45)-l-{5-[(3S,4S)-l-(5-Chloro-pyrimidin-2-yl)-3-hydroxy- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-buty\ ester
Figure imgf000146_0002
The title compound was synthesised from (tra/?5)-l-(5-chloro-pyrimidin-2-yl)-4-(2- chloro-pyrimidin-5-yloxymethyl)-piperidin-3-ol and (trans)-l-(5-bromo-pyrimidin-2-yl)-4- (2-chloro-pyrimidin-5-yloxymethyl)-piperidin-3-ol (Preparation 258) employing the procedure outlined in Preparation 261: RT = 4.32 min; mlz (ES+) = 618.28 [M+ H]+.
Preparation 263: (3S,45)-4-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l- yl]-pyrimidin-5-yloxymethyl}-l-(5-chloro-pyrimidin-2-yl)-piperidin-3-ol
Figure imgf000146_0003
The title compound was synthesised from [(3i?,45)-l-{5-[(35',45)-l-(5-chloro- pyrimidin-2-yl)-3-hydroxy-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)- pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 262, 55mg, 0.089mmol) employing the procedure outlined in Example 205: RT = 2.70 min; mlz (ES ) = 518.20 [M +
H]+.
Preparation 264: (ci's)-4-Hydroxymeth l-piperidin
Figure imgf000147_0001
To a solution of acetic acid (czs)-4-acetoxymethyl-l-benzyl-piperidin-3-yl ester
(Preparation 251, 3.00g, 9.82mmol) in MeOH (60mL) was added potassium carbonate (13.6g, 98.24mmol) and the resulting reaction mixture was stirred at r.t. for 10 min. Water (50mL) was added and the reaction mixture extracted with EtOAc (3 x lOOmL). The combined organic extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo to afford the (3i?,45)-l-benzyl-4-(hydroxymethyl)piperidin-3-ol. The product was dissolved in EtOH (lOOmL) and passed twice through an H-Cube apparatus (10% Pd/C, 50 atmospheres, 70°C) at a flow rate of lmL per min. The solvent was removed in vacuo to afford the title compound: 1H NMR δΗ (400 MHz, DMSO-d6): 4.07 - 4.40 (m, 2 H), 3.62 (br. s, 1H), 3.14 - 3.52 (m, 3 H), 2.71 - 2.96 (m, 2 H), 2.29 - 2.46 (m, 1 H), 1.52 (m, 1 H), 1.12 - 1.43 (m, 2 H).
Preparation 265: (3R,4S)-3-Hydrox -4-hydroxymethyl-piperidine-l-carbonitrile
Figure imgf000147_0002
To a solution of (cz's)-4-hydroxymethyl-piperidin-3-ol (Preparation 264, 0.880g, 6.71mmol) in DCM (30mL) was added NaHC03 (1.69g, 20.1mmol) and water (5mL) and the resulting reaction mixture was cooled to 0°C. A solution of cyanogen bromide (0.853g, 8.05mmol) in DCM (lOmL) was added and the resulting reaction mixture was stirred at r.t. for 16 h. NaHC03 (lg, 11.9mmol) and MgS04 (lOg) were added and the reaction mixture stirred at r.t. for 10 min. The solids were removed by filtration, washing with DCM (250mL) and the filtrate concentrated in vacuo to afford the title compound: 1H NMR δπ (400 MHz, DMSO-de): 4.04 (br.s, 1H), 3.59 - 3.76 (m, 2H), 3.30 - 3.52 (m, 2H), 2.92 - 3.14 (m, 3H), 2.29 (br.s. 1H), 1.86 - 2.09 (m, 1H), 1.50 - 1.66 (m, 1H), 1.31 - 1.47 (m, 1H). Preparation 266: (cis)-4-Hydroxymethyl-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-3-ol
Figure imgf000148_0001
To a solution of (3i?,45)-3-hydroxy-4-hydroxyrnethyl-piperidine-l-carbonitrile
(Preparation 265, 0.637g, 4.67mmol) and N-hydroxyiosobutyramidine (0.57g, 5.6mmol) in EtOH (lOmL) was added a solution of zinc chloride (0.637g, 4.67mmol) in EtOH (lmL) dropwise over 5 min and the resulting reaction mixture was stirred at r.t. for 2 h. Aqueous HCl (12.5M, 5mL) was added and the reaction mixture heated at 80°C for 4 h. The solvent was removed in vacuo and the pH adjusted to pH 7 with saturated aqueous NaHC03 solution. The product was extracted into EtOAc (3 x 75mL) and the combined organic extracts washed with brine, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromatography (EtOAc) afforded the title compound: RT = 2.17 min; mlz (ES ) =
Figure imgf000148_0002
Preparation 267: Methanesulfonic acid (3R, S)-3-hydroxy-l-(3-isopropyl- [1,2,4] oxadiazol-5-yl)-piperidin-4- lmethyl ester
Figure imgf000148_0003
To a solution of (cz5)-4-hydroxymethyl-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-3-ol (Preparatino 266, 0.170g, 0.704mmol) and triethylamine (0.118mL,
0.845mmol) in DCM (lOmL) at 0°C was added methanesulfonyl chloride (54.5μΕ,
0.704mmol) dropwise and the resulting reaction mixture was stirred at r.t. for 2 h. The reaction mixture was diluted with DCM (lOOmL), washed with saturated aqueous Na2C03 solution and brine, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotograpy (DCM:MeOH; 96:4) afforded the title compound: RT = 2.72 min; mlz (ES+) = 320.07 [M+ H]+. Preparation 268: (cis)-4-(2-Chloro-pyrimidin-5-yloxymethyl)-l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-3-ol
Figure imgf000149_0001
To a solution of 2-chloro-5-hydroxypyrimidine (59mg, 0.45mmol) and potassium carbonate (75mg, 0.54mmol) in DMF (2mL) was added a solution of methanesulfonic acid (3i?,45)-3-hydroxy-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-ylmethyl ester
(Preparation 267, 0.145g, 0.454mmol) in DMF (3.8mL) and the resulting reaction mixture heated at 80°C for 16 h. Further potassium carbonate (31.3mg, 0.23mmol) was added and the reaction mixture heated at 80°C for 24h. The solvent was removed in vacuo, azeotroping with toluene (2 x), and the remainder diluted with EtOAc, washed with saturated aqueous Na2C03 solution and brine, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromatography (EtOAc:IH; 3:2) afforded the title compound: RT = 0.92 min; mlz (ES+) = 354.32 [M+ H]+ (LCMS Method-6). Preparation 269: 2-Chloro-5-[(cis)-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-3-methoxy- piperidin-4-ylmethoxy]-pyrimidine
Figure imgf000149_0002
To a solution of (cz5)-4-(2-chloro-pyrimidin-5-yloxymethyl)-l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-3-ol (Preparation 268, 49mg, 0.14mmol) in THF (lOmL) was added sodium hydride (60% dispersion in mineral oil, 1 lmg, 0.28mmol) and the resulting reaction mixture stirred at r.t. for 10 min. Methyl iodide (43μί, 0.69mmol) was added and the reaction mixture stirred at r.t. for 3 h. Further sodium hydride (60% dispersion in mineral oil, 1 lmg, 0.28mmol) and methyl iodide (87μΕ, 1.4mmol) were added and the reaction mixture stirred at r.t. for 48 h. Water (50mL) was added and the reaction mixture extracted with EtOAc (3 x lOOmL). The combined organic extracts were washed with saturated aqueous NaHCOs solution and brine, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotogrpahy (EtOAcTH; 65:45) afforded the title compound: RT = 3.48 min; mlz (ES+) = 368.11 [M+ H]+. Preparation 270: [(3R,4S)-l-{5-[(3R,4S)-l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-3- methoxy-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- 3-yl]-carbamic acid tert- ty\ ester
Figure imgf000150_0001
To a solution of 2-chloro-5-[(cz'5)-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-3-methoxy- piperidin-4-ylmethoxy]-pyrimidine (Preparation 269, 61mg, 0.16mmol) in DMSO (2.5mL) was added [(3i?,45)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 0.105g, 0.332mmol) and DBU (24.8μΕ, 0.166mmol) and the resulting reaction mixture was heated at 75°C for 48 h, then at 85°C for 72 h. The reaction mixture was poured into water (lOOmL), extracted with EtOAc (3 x) and the combined organic extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo.
Purification by column chromatography (DCM:MeOH; 95:5) afforded [(3i?,45)-l-{5-[(cis)- (3-iopropyl-[l,2,4]oxadiazol-5-yl)-3-methoxy-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4- (2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester. Purification by chiral HPLC (MeOH:THF; 93 :7, 12ml/min, 250nm) afforded the title compound: RT = 1.41 min; m/z (ES+) = 648.57 [M+ H]+ (LCMS Method-6).
Preparation 271: [(3R,45)-l-{5-[(3S,4R)-l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-3- methoxy-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- 3-yl]-carbamic acid tert- ty\ ester
Figure imgf000150_0002
The title compound was synthesized from 2-chloro-5-[(czV)-l-(3-isopropyl- [1 ,2,4]oxadiazol-5-yl)-3-methoxy-piperidin-4-ylmethoxy]-pyrimidine (Preparation 269) employing the procedure outlined in Preparation 270: RT = 1.41 min; m/z (ES ) = 648.57 [M + H]+ (LCMS Method-6). Preparation 272: 4-Fluoro-3-((£')-2-nitr -vinyl)-benzoic acid methyl ester
Figure imgf000151_0001
The title compound was synthesized from 4-fluoro-3-formyl-benzoic acid methyl ester (10. Og, 53.5mmol) employing a procedure similar to that outlined in Preparation 35, using IPA in place of MeOH: 1H NMR δΗ (300MHz, CDC13): 8.25-8.22 (m, 1H), 8.20-8.10 (m, 1H), 8.07 (d, J=13.7 Hz, 1H), 7.27 (d, J=13.7 Hz, 1H), 7.29-7.23 (m, 1H), 3.92 (s, 3H).
Preparation 273: 3-((frans)-l-Benzyl-4-nitro-pyrrolidin-3-yl)-4-fluoro-benzoic acid methyl ester
Figure imgf000151_0002
The title compound was prepared from 4-fluoro-3-((E)-2-nitro-vinyl)-benzoic acid methyl ester (Preparation 272) employing a method similar to that outlined in Preparation 31, but the reaction was carried out at 0°C. Purification by column chromatography
(Heptane:EtOAc, 6: 1) afforded the title compound. RT = 3.15 min; mlz (ES+) = 359.2 [M + H]+ (LCMS Method - 4).
Preparation 274: (irans)-l-Benzyl-4-(2-fluoro-5-methoxycarbonyl-phenyl)-pyrrolidin-3- yl-ammonium
Figure imgf000151_0003
To a solution of 3-((tra/75)-l-benzyl-4-nitro-pyrrolidin-3-yl)-4-fluoro-benzoic acid methyl ester (Preparation 273, 14.7g, 41.0mmol) in AcOH (225mL) at 50°C was added zinc powder (3.88g, 243mmol) in four portions over 1.5 h. The resulting reaction mixture was heated at 50°C for 15 h. Upon cooling, the reaction mixture was filtered through celite, washing with AcOH (3 x lOOmL) and the filtrate concentrated in vacuo. The remainder was added cautiously to saturated aqueous NaHC03 solution (750mL) and extracted with DCM (3 x 300mL). The combined organic extracts were washed with water (750mL) and brine (500mL), dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotography (MeOH:DCM; 99: 1 to 98:2 to 97:3 to 96:4 to 95:5 to 94:6 to 92:8 to 90: 10) afforded the title compound: RT = 2.93 min; mlz (ES+) = 329.2 [M+ H]+ (LCMS Method - 4)·
Preparation 275: 3-((irans)-l-Benzyl-4-tert-butoxycarbonylamino-pyrrolidin-3-yl)-4- fluoro-benzoic acid methyl ester
Figure imgf000152_0001
To a solution of (tra/75)-l-benzyl-4-(2-fluoro-5-methoxycarbonyl-phenyl)-pyrrolidin- 3-yl-ammonium (Preparation 274, 2.37g, 7.22mmol) and triethylamine (3mL, 21.7mmol) in THF (30mL) at 0°C was added άι-tertiary - vXyl dicarbonate (2.36g, 10.83mmol) and the resulting reaction mixture stirred at 0°C for 1 h, then at r.t. for 16 h. The solvent was removed in vacuo and the remainder dissolved in EtOAc, washed with water and brine, dried (MgS04), filtered and concentrated in vacuo. The remainder was triturated with heptane and the solid collected by filtration to afford the title compound: RT = 0.97 min; mlz (ES ) = 429.3 [M+ H]+ (LCMS Method - 2).
Preparation 276: [(irans)-l-Benzyl-4-(2-fluoro-5-hydroxymethyl-phenyl)-pyrrolidin-3- yl]-carbamic acid terf-butyl ester
Figure imgf000152_0002
To a solution of 3-((tra/75)-l-benzyl-4-tert-butoxycarbonylamino-pyrrolidin-3-yl)-4- fluoro-benzoic acid methyl ester (Preparation 275, 1.95g, 4.55mmol) in THF (7mL) at - 10°C was added lithium aluminium hydride (1M, 2.3mL, 2.3mmol) over 3 min and the resulting reaction mixture was stirred at -10°C for 100 min. EtOAc (30mL) and saturated aqueous Rochelle's salt solution (lOmL) were added and the reaction mixture stirred at -
10°C for 16 h. The organic layer was separated, washed with brine, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromatography (DCM:EtOAc; 1 : 1) afforded the title compound: RT = 3.05 min; mlz (ES+) = 401.3 [M + H]+ (LCMS Method - 4)· Preparation 277: [(3R,4S)-l-Benzyl-4-(2-fluoro-5-fluoromethyl-phenyl)-pyrrolidin-3- yl]-carbamic acid tert-butyl ester
Figure imgf000153_0001
To a solution of [(trans)- l-benzyl-4-(2-fluoro-5-hydroxymethyl-phenyl)-pyrrolidin- 3-yl]-carbamic acid tert-butyl ester (Preparation 276, 1.34g, 3.35mmol) in DCM (20mL) at -78°C was added DAST (0.66mL, 5.02mmol) and the resulting reaction mixture stirred at - 78°C for 2 h. Water and saturated aqueous NaHC03 solution were added, then the reaction mixture was warmed to r.t. and extracted with DCM (4 x). The combined organic extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo. Purifictaion by column chromotogrpahy (DCM:EtOAc; 6:1 to 5: 1) afforded [(trans)- 1 -benzyl-4-(2-fluoro-5- fluoromethyl-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester. Purification by chiral HPLC (IH:IPA:diethylamine; 96:4:0.1, 15ml/min, 270nm, RT = 11.6 min), afforded the title compound: RT = 3.01 min; mlz (ES+) = 403.3 [M+ H]+ (LCMS Method - 3).
Preparation 278 : [(3R, S)-4-(2-Fluoro-5-fluor omethyl-phenyl)-pyr rolidin-3-yl] - carbamic acid tert-butyl ester
Figure imgf000153_0002
To a solution of [(3 ?,45)-l-benzyl-4-(2-fluoro-5-fluoromethyl-phenyl)-pyrrolidin-3- yl]-carbamic acid tert-butyl ester (Preparation 277, 0.092g, 0.23mmol) in DCE (1 lmL) and DIPEA (0.32mL, 1.8mmol) was added trichloroethyl chloroformate (47.2μΕ, 0.343mmol) dropwise and the resulting reaction mixture was heated under reflux conditions for 2 h. The solvent was removed in vacuo, the residue dissolved in AcOH (2mL) and zinc (50mg, 0.76mmol) was added portion wise. The resulting reaction mixture was stirred at r.t. for 2 h, MeOH (lOmL) was added and the reaction mixture filtered through celite. The filtrate was concentrated in vacuo and the residue purified by preparative HPLC to afford the title compound: RT = 0.72 min; mlz (ES+) = 313.34 [M+ H]+ (LCMS Method - 6).
Preparation 279: l-(2-Fluoro-5-methyl-phenyl)-2-nitro-ethanol
Figure imgf000154_0001
To a solution of 2-fluoro-5-methyl-benzaldehyde (5.0g, 36.2mmol) and nitromethane (2.35mL, 43.5mmol) in MeOH (90mL) at 0°C was added a solution of NaOH (1.52g, 38.0mmol) in H20 (15mL) dropwise over 10 min and the resulting reaction mixture was stirred at r.t. for 50 min. The reaction mixture was poured into saturated aqueous NH4C1 solution and extracted with DCM (3 x). The combined organics were washed with brine, dried (MgSC^), filtered and concentrated in vacuo to afford the title compound: 1H NMR 5H (300MHz, CDCI3): 7.34-7.30 (m, 1H), 7.15-7.10 (m, 1H), 7.0-6.9 (m, 1H), 5.71-5.70 (m, 1H), 4.63-4.57 (m, 2H), 2.93 (br. s, 1H), 2.33 (s, 3H).
Preparation 280: l-Fluoro-4-methyl-2-((£)-2-nitro-vinyl)-benzene
Figure imgf000154_0002
To a solution of l-(2-fluoro-5-methyl-phenyl)-2-nitro-ethanol (Preparation 279, 7.18g, 36.1mmol) in acetic anhydride (6.8mL, 22.2mmol) was added DMAP (300mg, 2.5mmol) and the resulting reaction mixture was stirred at r.t. for 19 h. The reaction mixture was slowly poured into saturated aqueous NaHC03 solution and stirred vigorously for 1 h. The solid was collected by filtration, washing with saturated aqueous NaHC03 solution, then H20 to afford the title compound: 1H NMR δΗ (300MHz, CDC13): 8.04-7.99 (d, J=13.76 Hz, 1H), 7.74-7.69 (d, J=13.76 Hz, 1H), 7.30-7.26 (m, 2H), 7.1-7.0 (m, 1H), 2.36 (s, 3H).
Preparation 281: (rrans)-l-Benzyl-3-(2-fluoro-5-methyl-phenyl)-4-nitro-pyrrolidine
Figure imgf000154_0003
To a solution of l-fluoro-4-methyl-2-((E)-2-nitro-vinyl)-benzene (Preparation 280, 6.38g, 35.3mmol) in DCM (70mL) at 10°C was added TFA (0.27mL, 3.52mmol), followed by dropwise addition of N-(methoxyrnethyl)-N-(trimethylsilylmethyl)benzylamine (9.52mL, 38.8mmol) in DCM (30mL). The resulting reaction mixture was stirred at r.t. for 1.5 h, poured into saturated aqueous NaHC03 solution and extracted with DCM (3 x). The combined organic extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo to afford the title compound: 1H NMR δΗ (300MHz, CDC13): 7.35-7.26 (m, 5H), 7.1-7.0 (m, 2H), 7.0-6.9 (m, 1H), 5.04-5.02 (m, 1H), 4.17-4.15 (m, 1H), 3.77-3.65 (m, 2H), 3.5-3.46 (m, 1H), 3.3-3.26 (m, 1H), 3.1-3.0 (m, 1H), 2.65-2.60 (m, 1H), 2.30 (s, 3H).
Preparation 282: (rrans)-l-Benzyl-4-(2-fluoro-5-methyl-phenyl)-pyrrolidin-3-yl- ammonium
Figure imgf000155_0001
To a solution of (tra/75)-l-Benzyl-3-(2-fluoro-5-methyl-phenyl)-4-nitro-pyrrolidine (Preparation 281, 11.4g, 35.3mmol) in AcOH (90mL) at 30°C was added zinc (13.8g,
212mmol) portion wise over 30 min. The resulting reaction mixture was stirred at 30°C for 1 h, then filtered through celite washing with AcOH. The filtrate was concentrated in vacuo, the remainder dissolved in DCM (30mL) and poured slowly into saturated aqueous NaHC03 solution (900mL). The resulting mixture was stirred at r.t. for 16 h, the layers separated and the aqueous extracted with DCM (2 x). The combined organic extracts were dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotography (DCM:MeOH, 19:1 to 9: 1 to 17:3 to 4: 1 to 7:3 to 3:2) afforded the title compound: RT = 3.06 min; mlz (ES+) = 285.1 [M+ H]+ (LCMS Method - 4). Preparation 283: [(rrans)-l-Benzyl-4-(2-fluoro-5-methyl-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-buty\ ester
Figure imgf000155_0002
To a solution of (tra/75)-l-benzyl-4-(2-fluoro-5-methyl-phenyl)-pyrrolidin-3-yl- ammonium (Preparation 282, 5.6g, 19.7mmol) in THF (80mL) at 0°C was added triethylamine (5.65mL, 40mmol) and di-tert-butyldicarbonate (5.15g, 23.6mmol) in THF (30mL) and the resulting reaction mixture was stirred at r.t. for 21 h. The reaction mixture was poured into water, extracted with EtOAc (3 x) and the combined organic extracts washed with brine, dried (MgSC^), filtered and concentrated in vacuo. The resulting oil was dissolved in IH, allowed to stand at r.t. and the solid collected by filtration, washing with IH, to afford the title compound: RT = 3.36 min; mlz (ES ) = 385.1 [M+ H] (LCMS Method -
4)·
Preparation 284: [(3R,4S)-l-Benzyl-4-(2-fluoro-5-methyl-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-butyl ester
Figure imgf000156_0001
The title compound was afforded via chiral HPLC separation of [(trans)- 1 -benzyl-4-(2- fluoro-5-methyl-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 283): IH:IPA:DEA 96:4:0.1, 15ml/min, 270nm, RT = 8.2 min.
Preparation 285: [(3R,4S)-4-(2-Fluoro-5-methyl-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester
Figure imgf000156_0002
A solution of [(3 ?,45)-l-benzyl-4-(2-fluoro-5-methyl-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-butyl ester (Preparation 284, 2.4g, 6.2mmol) in MeOH (124 mL) was passed through an H-Cube apparatus (10% Pd/C Catcart 70, lOObar, 50°C) at a flow rate of lmL per min. The solvent was removed in vacuo to afford the title compound: RT = 2.42 min; mlz (ES+) = 295.32 [M+ H]+. Preparation 286: l-(2,4-Difluoro-5-m thyl-phenyl)-2-nitro-ethanol
Figure imgf000157_0001
To a solution of 2,4-difluoro-5-methyl-benzaldehyde (15.0g, 96.1mmol) and nitromethane (7.33g, 120mmol) in IPA (150mL) at 0°C was added a solution of NaOH (5.22g, 131mmol) in H20 (20mL) dropwise over 10 min and the resulting reaction mixture was stirred at r.t. for 1 h. Water (90mL) and saturated aqueous NH4C1 solution (105mL) were added and extracted with DCM (3 x 250mL). The combined organic extracts were washed with brine, dried (Na2S04), filtered and concentrated in vacuo. Purification by column chromatography (IH:EtAOc, 9: 1 to 7:1 to 4: 1 to 3: 1) afforded the title compound: 1H NMR δΗ (300MHz, CDCI3): 7.38-7.34 (m, 1H), 6.82-6.76 (m, 1H), 5.69-5.66 (m, 1H), 4.61-4.51 (m, 2H), 2.95 (s, 1H), 2.28 (s, 3H).
Preparation 287: l,5-Difluoro-2-methyl-4-((£)-2-nitro-vinyl)-benzene
Figure imgf000157_0002
The title compound was synthesized from l-(2,4-difluoro-5-methyl-phenyl)-2-nitro- ethanol (Preparation 286, 14.5g, 66.9mmol) employing a procedure similar to that outlined in Preparation 280: 1H NMR δΗ (400MHz, CDC13): 7.99-7.96 (d, J=13.73 Hz, 1H), 7.68- 7.65 (d, J=13.73 Hz, 1H), 7.34-7.3 (m, 1H), 6.91-6.89 (m, 1H), 2.27 (s, 3H). Preparation 288: (rrans)-l-Benzyl- -(2,4-difluoro-5-methyl-phenyl)-4-nitro-pyrrolidine
Figure imgf000157_0003
The title compound was synthesized from l,5-difluoro-2-methyl-4-((E)-2-nitro- vinyl)-benzene (Preparation 287, 12. Og, 60.3mmol) employing a procedure similar to that outlined in Preparation 281: RT = 1.00 min; mlz (ES+) = 333.2 [M+ H]+ (LCMS Method- 2)· Preparation 289: (rrans)-l-Benzyl-4-(2,4-difluoro-5-methyl-phenyl)-pyrrolidin-3- ylamine
Figure imgf000158_0001
The title compound was synthesized from (trans)- l-benzyl-3-(2,4-difluoro-5-methyl- phenyl)-4-nitro-pyrrolidine (Preparation 288, 21.0g, 63.3mmol) employing a procedure similar to that outlined in Preparation 282: RT = 0.93 min; mlz (ES+) = 303.2 [M+ H]+ (LCMS Method-2).
Preparation 290: [(rrans)-l-Benzyl-4-(2,4-difluoro-5-methyl-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-buty\ ester
Figure imgf000158_0002
The title compound was synthesised from ( rans)- l-benzyl-4-(2,4-difluoro-5-methyl- phenyl)-pyrrolidin-3-ylamine (Preparation 289, 9.5g, 31.5mmol) employing a procedure similar to that outlined in Preparation 283: RT = 3.25 min; mlz (ES+) = 403.3 [M+ H]+ (LCMS Method-3).
Preparation 291: [(3R,4S)-l-Benzyl-4-(2,4-difluoro-5-methyl-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-buty\ ester
Figure imgf000158_0003
The title compound was afforded via chiral HPLC separation of [(trans)- l-benzyl-4-
(2,4-difluoro-5-methyl-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 290): IH:IPA:DEA 96:4:0.1, 15ml/min, 270nm, RT = 9.0 min. Preparation 292 : [(3R,4S)-4-(2,4-Difluoro-5-methyl-phenyl)-pyrrolidin-3-yl] -carbamic acid tert-buty\ ester
Figure imgf000159_0001
A solution of [(3 ?,45)-l-benzyl-4-(2,4-difluoro-5-methyl-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-butyl ester (Preparation 291, 1.97g, 4.9mmol) in MeOH (100 mL) was passed through an H-Cube apparatus (10% Pd/C Catcart 70, 80bar, 50°C) at a flow rate of lmL per min. The solvent was removed in vacuo to afford the title compound: RT = 0.68 min; m/z (ES+) = 313.32 [M+ H]+ (LCMS Method-6).
Preparation 293: 3, N-Dimethoxy-N-methyl-isonicotinamide
Figure imgf000159_0002
A suspension of 3-methoxypyridine-4-carboxylic acid hydrochloride (5.48g,
28.9mmol) in thionyl chloride (40mL) was heated under reflux conditions for 6 h. Upon cooling, the solvent was removed in vacuo and the residue supended in DCM (150mL). Ν,Ο- Dimethylhydroxylamine hydrochloride (5.64g, 57.8mmol) was added and the suspension cooled to 0°C before the portionwise addition of triethylamine (16.1mL, 116mmol). The reaction was stirred at r.t.for a further 18 h before removal of the solvent in vacuo. The residue was partitioned between EtOAc (200mL) and water (120mL) and the aqueous layer separated and further extracted with chloroformTPA (4: 1, 3 x lOOmL). The combined organic extracts were concentrated in vacuo and the remainder purified by column chromatography (EtOAcTH; 3 : 1 to 1 :0) to afford the title compound: 1H NMR δΗ (400 MHz, CDCls): 8.38 (s, 1 H), 7.14 - 7.21 (m, 1 H), 3.96 (s, 3 H), 3.49 (br. s., 3 H), 3.37 (br. s., 3 H).
Preparation 294: l-(3-Methoxy-pyridin-4-yl)-ethanone
To a solution of 3, N-dimethoxy-N-methyl-isonicotinamide (Preparation 293, 4.83g, 24.6mmol) in THF (40mL) at 0°C was added methylmagnesium bromide (3.0M in Et20, 12.3mL, 36.9mmol) and the resulting reaction mixture was stirred at 0-5°C for 90 min. The reaction was quenched with saturated aqueous NH4C1 solution (50mL) and extracted with EtOAc (3 x 80mL). The combined organic extracts were concentrated in vacuo to afford the title compound: 1H NMR δΗ (400 MHz, CDC13): 8.48 (s, 1 H), 8.36 (d, J=4.69 Hz, 1 H), 7.49 (d, J=5.08 Hz, 1 H), 4.04 (s, 3 H), 2.63 (s, 3 H).
Preparation 295: (R)-l-(3-Methoxy-pyridin-4-yl)-ethanol
Figure imgf000160_0001
To a solution of diphenyl[(25)-pyrrolidin-2-yl]methanol (623mg, 2.46mmol) in THF (25mL) was added boric acid, trimethyl ester (0.335mL, 2.95mmol) and the reaction mixture stirred at r.t. for 1 h. Borane-dimethylsulfide complex (4.67mL, 49.2mmol) was added and the resulting reaction mixture stirred at r.t. for 15 min prior to the slow addition of l-(3- methoxy-pyridin-4-yl)-ethanone (Preparation 294, 3.72g, 24.6mmol) in THF (5mL) over 1 h. The reaction mixture was stirred at r.t. for a further 1 h, then cautiously acidified by the dropwise addition of aqueous HC1 (12M) and the reaction mixture stirred at r.t. for 20 min. The pH was adjusted to pH 8 with saturated aqueous NaHC03 solution and the solution extracted with EtOAc (3 x 80mL). The combined organic extracts were concentrated in vacuo and the residue analysed by chiral HLPC (IH:MTBE:MeOH 75:20:5, lmL/min, 285nM) which indicated the ratio of enantiomers to be > 9: 1. The remainder was purified by column chromatography (DCM:MeOH; 1 :0 to 95:5) to afford the title compound: 1H NMR δΗ (500 MHz, CDC13): 8.24 (d, J=4.42 Hz, 1 H), 8.20 (s, 1 H), 7.35 (d, J=4.98 Hz, 1 H), 5.12 (q, J=6.27 Hz, 1 H), 3.93 (s, 3 H), 1.47 (d, J=6.63 Hz, 3 H).
Preparation 296: (cis)-4-((R)-l-Hydroxy-ethyl)-3-methoxy-piperidine-l-carbonitrile
Figure imgf000160_0002
To a solution of (i?)-l-(3-methoxy-pyridin-4-yl)-ethanol (Preparation 295, 3.67g, 24.0 mmol) in MeOH (lOOmL) was added AcOH (1.50mL, 26.4mmol) followed by platinum dioxide (0.381g, 1.68mmol). The reaction mixture was placed under a hydrogen atmosphere (approximately 800 Psi) and stirred for 22 h. Furher AcOH (1.50mL, 26.4mmol) and platinum dioxide (0.381g, 1.68mmol) were added and the reaction mixture was stirred under a hydrogen atmosphere (approximately 800 Psi) at 40°C for 6 h, at r.t. for 15 h, at 40°C for 10 h and at r.t. for 83 h. The reaction mixture was filtered and the filtrate concentrated in vacuo to afford (i?)-l-((cz'5)-3-methoxy-piperidin-4-yl)-ethanol acetate. The product was dissolved in DCM (lOOmL) and a slurry of NaHC03 (lO.lg, 0.12mol) in H20 (lOOmL) was added. The reaction mixture was cooled to 0°C, cyanogen bromide (2.80g, 26.4mmol) in DCM (30mL) was added and the resulting reaction mixture warmed to r.t. and stirred for 5 h. The organic layer was separated, concentrated in vacuo and the remainder purified by column chromatography (EtOAc:IH; 1 :1 to 1 :0) to afford the title compound: 1H NMR δπ (500 MHz, CDC13): 3.79 - 3.87 (m, 1 H), 3.75 (br. s., 1 H), 3.68 - 3.74 (m, 1 H), 3.47 - 3.52 (m, 1 H), 3.46 (s, 3 H), 3.05 (td, J=12.85, 3.04 Hz, 1 H), 2.89 (dd, J=13.82, 1.11 Hz, 1 H), 2.37 (d, J=7.19 Hz, 1 H), 2.07 - 2.13 (m, 1 H), 1.38 - 1.49 (m, 2 H), 1.25 (d, J=6.08 Hz, 3 H),
Preparation 297: (R)-l-[(cis)-l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-3-methoxy-piperidin- 4-yl]-ethanol
Figure imgf000161_0001
The title compound was synthesized from (czs)-4-((i?)-l-hydroxy-ethyl)-3-methoxy- piperidine-l-carbonitrile (Preparation 296) employing a procedure similar to that outlined in Preparation 266: 1H NMR δΗ (500 MHz, CDC13): 4.46 - 4.54 (m, 1 H), 4.18 - 4.23 (m, 1
H), 3.76 - 3.86 (m, 2 H), 3.42 (s, 3 H), 3.08 (td, J=12.99, 2.76 Hz, 1 H), 2.95 (dd, J=14.37, 1.11 Hz, 1 H), 2.84 - 2.93 (m, 1 H), 2.48 (d, J=7.19 Hz, 1 H), 1.94 - 2.05 (m, 1 H), 1.46 - 1.57 (m, 2 H), 1.29 (d, J=6.63 Hz, 6 H), 1.26 (d, J=6.08 Hz, 3 H).
Preparation 298: 2-Chloro-5-{(5)-l-[(cw)-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-3- methoxy-piperidin-4-yl]-ethox -pyrimidine
Figure imgf000161_0002
To a solution of (i?)-l-[(cz5)-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-3-methoxy- piperidin-4-yl]-ethanol (Preparation 297, 0.2g, 0.7mmol) and 2-chloro-5- hydroxypyrimidine (0.121g, 0.928mmol) in THF (6mL) was added PPh3 (0.390g, 1.48mmol) and TBAD (0.342g, 1.48mmol). The resulting reaction mixture was heated to 60°C and stirred for 2.5 h. Upon cooling, the reaction mixture was concentrated in vacuo and the remainder partitioned between EtOAc (30mL) and water (20mL). The organic layer was separated, washed with brine (20mL) and concentrated in vacuo. Purification by preparative HPLC afforded the title compound: RT = 1.15 min; mlz (ES+) = 382.4 [M+ H]+ (LCMS Method-6).
Preparation 299: 4-(2-Chloro-pyrimidin-5-yloxymethyl)-4-hydroxy-piperidine-l- carboxylic acid tert-butyl ester
Figure imgf000162_0001
To a solution of l-oxa-6-aza-spiro[2.5]octane-6-carboxylic acid tert-butyl ester (1.61g, 7.55mmol) in DMF (lOmL) was added 2-chloro-5-hydroxypyrimidine (1.08g, 8.30mmol) and potassium carbonate (1.56g, 11.3mmol) and the resulting reaction mixture was heated at 80°C for 20 h. The solvent was removed in vacuo and the residue partitioned between EtOAc (lOOmL) and water (50mL). The organic layer was separated, washed with brine (2 x 50mL) and concentrated in vacuo. Purification by column chromotogrpahy (EtOAcTH; 3:7 to 6:4) afforded the title compound: RT = 0.96 min; mlz (ES+) = 344.30 [M + H]+ (LCMS Method-6).
Preparation 300: 4-(2-Chloro-p rimidin-5-yloxymethyl)-piperidin-4-ol hydrochloride
Figure imgf000162_0002
To a solution of 4-(2-chloro-pyrimidin-5-yloxymethyl)-4-hydroxy-piperidine-l- carboxylic acid tert-butyl ester (Preparation 299, 0.566g, 1.65mmol) in 1,4-dioxane (5mL) was added HCl in 1,4-dioxane (4M, 5mL, 20mmol) and the resulting reaction mixture was stirred at r.t. for 4 h. The solvent was removed in vacuo to afford the title compound: RT = 0.37 min; mlz (ES+) = 244.22 [M+ H]+ (LCMS Method-6).
Preparation 301: 4-(2-Chloro-pyrimidin-5-yloxymethyl)-4-hydroxy-piperidine-l- carbonitrile
Figure imgf000162_0003
To a solution of 4-(2-chloro-pyrimidin-5-yloxyrnethyl)-piperidin-4-ol hydrochloride (Preparation 300, 0.432g, 1.54mmol) in DCM (15mL) was added NaHC03 (0.389g, 4.63mmol) in H20 (15mL). The resulting reaction mixture was cooled to 0°C and cyanogen bromide (0.196g, 1.85mmol) was added prior to warming the reaction mixture to r.t. and stirring for 5 h. The aqueous layer was separated, extracted with DCM (20mL) and the combined organic layers were concentrated in vacuo to afford the title compound: RT = 0.68 min; mlz (ES+) = 269.23 [M+ H]+ (LCMS Method-6).
Preparation 302: 4-(2-Chloro-pyrimidin-5-yloxymethyl)-l-(3-ethyl-[l,2,4]oxadiazol-5- yl)-piperidin-4-ol
Figure imgf000163_0001
To a solution of 4-(2-chloro-pyrimidin-5-yloxymethyl)-4-hydroxy-piperidine-l- carbonitrile (Preparation 301, 0.391g, 1.46mmol) and N-hydroxypropionamidine (0.154g, 1.75mmol) in EtOH (6mL) was added zinc dichloride (0.238g, 1.75mmol) in EtOH (2mL) dropwise. The resulting reaction mixture was stirred at r.t. for 2.5 h. Aquoues HC1 (12M, 0.36 ImL, 4.36mmol) was added and the reaction mixture heated under reflux conditions for 5 h. The solvent was removed in vacuo, the residue suspended in water (15mL) and the pH adjusted to ~ pH 8 with saturated aqueous NaHC03 solution. The mixture was extracted with EtOAc (3 x 25mL) and the combined organic extracts concentrated in vacuo to afford the title compound: RT = 0.81 min; mlz (ES+) = 340.30 [M+ H]+ (LCMS Method-6).
Preparation 303 : 2-Chloro-5- [ l-(3-ethyl- [ 1 ,2,4] oxadiazol-5-yl)-4-methoxy-piperidin-4- ylmethoxy]-pyrimidine
Figure imgf000163_0002
To a solution of 2-chloro-5-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)-4-methoxy-piperidin- 4-ylmethoxy]-pyrimidine (Preparation 302, lOOmg, 0.294mmol) in anhydrous DMF (3mL) at 0°C was added NaH (60% dispersion in mineral oil, 12.9mg, 0.324mmol) portion wise and the resulting reaction mixture was stirred at 0-5°C for 15 min. Methyl iodide (36.6μΕ, 0.589mmol) was added and the resulting reaction mixture was warmed to r.t. and stirred for 3 h. The reaction mixture was cooled to 0°C and further NaH (60% dispersion in mineral oil, 12.9mg, 0.324mmol)) and methyl iodide (36.6μί, 0.589mmol) were added. The reaction mixture was warmed to r.t. and stirred for a further 19 h. The solvent was removed in vacuo and the remainder partitioned between EtOAc (lOmL) and H20 (5mL). The organic layer was separated, washed with brine (5mL) and concentrated in vacuo to afford the title compound: RT = 0.95 min; mlz (ES+) = 354.32 [M+ H]+ (LCMS Method-6).
Preparation 304: 4-(2-Chloro-pyrimidin-5-yloxymethyl)-4-fluoro-piperidine-l- carboxylic acid tert-butyl ester
Figure imgf000164_0001
To a solution of 4-(2-chloro-pyrimidin-5-yloxymethyl)-4-hydroxy-piperidine-l- carboxylic acid tert-butyl ester (Preparation 299, 500mg, lmmol) in DCM (lOmL) at 0°C was added diethylaminosulfur trifluoride (0.23mL, 1.7mmol) dropwise. The resulting reaction mixture was stirred at 0-5°C for 1 h, then quenched with saturated aqueous NaHC03 solution (5mL) and the organic layer separated and concentrated in vacuo. Purification by column chromatography (EtOAcTH; 0: 1 to 1 :0) afforded the title compound: RT = 1.18 min; mlz (ES+) = 290.23 [M -56]+ (LCMS Method-6).
Preparation 305: 4-(2-Chloro-pyrimidin-5-yloxymethyl)-4-fluoro-piperidine-l- carbonitrile
Figure imgf000164_0002
The title compound was synthesized from 4-(2-chloro-pyrimidin-5-yloxymethyl)-4- fluoro-piperidine-l-carboxylic acid tert-butyl ester (Preparation 304, 410mg, 1.2mmol) employing the procedures outlined in Preparation 300 and Preparation 301: RT = 0.87 min; mlz (ES+) = 271.25 [M+ H]+ (LCMS Method-6).
Preparation 306 : 2-Chloro-5- [ l-(3-ethyl- [ 1 ,2,4] oxadiazol-5-yl)-4-fluoro-piperidin-4- ylmethoxy]-pyrimidine
Figure imgf000164_0003
Crude title compound was synthesized from 4-(2-chloro-pyrimidin-5-yloxymethyl)- 4-fluoro-piperidine-l-carbonitrile (Preparation 305, 0.23 lg, 0.853mmol) employing a procedure similar to that outlined in Preparation 302. Purification by column
chromatography (EtOAc:IH; 3:7 to 1 : 1) afforded the title compound: RT = 1.0 min; mlz (ES+) = 342.28 [M+ H]+ (LCMS Method-6).
Preparation 307: 5-Bromo-2-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4- ylmethoxy] -pyridine
Figure imgf000165_0001
The title compound was synthesised from [(l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl]methanol (Preparation 1, 777mg, 3.45mmol) and 5-bromo-2- hydroxypyridine employing a procedure similar to that outlined in Preparation 244: RT = 4.28 min; mlz (ES+) = 381.06, 383.05 [M+ H]+.
Preparation 308: ((3R,45)-4-(2,5-Difluoro-phenyl)-l-{6-[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)-piperidin-4-ylmethoxy]-pyridin-3-yl}-pyrrolidin-3-yl)-carbamic acid terf-butyl ester
Figure imgf000165_0002
A mixture of [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 300mg, l .OOmmol), 5-bromo-2-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)-piperidin-4-ylmethoxy]-pyridine (Preparation 307, 0.320g, 0.838mmol), sodium tertiary butoxide (96.6mg, l .OOmmol) and biphenyl-2-yl(di-tert-butyl)phosphine (50mg, 0.168mmol) in a sealed tube in toluene (5mL) was degassed with argon for 20 min.
Tris(dibenzylideneacetone)dipalladium (38.4mg, 41.9μmol) was added and the resulting reaction mixture was heated at 90°C for 66 h. Upon cooling, the reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by 7.5% NH4OH in MeOH (7.5%). The basic fraction was concentrated in vacuo and the remainder purified by preparative HPLC to afford the title compound: RT = 4.55 min; mlz (ES ) = 599.36 [M +
HT. Preparation 309: 2-Chloro-4-(l-ethox -vinyl)-5-methoxy-pyrimidine
Figure imgf000166_0001
To a solution of 2,4-dichloro-5-methoxypyrimidine (12.39g, 69.22mmol) in 1,4- dioxane (0.5L, 6000mmol) was added a solution of potassium carbonate (19.13g,
138.5mmol) in H20 (20mL). The solution was degassed with argon for 10 min and 1- ethoxyvinyltri-n-butyltin (25. Og, 69.2mmol) and Pd(PPh3)2Cl2 (2.43g, 3.46mmol) were added. The mixture was heated to 100°C for 30 min and the solvent removed in vacuo. The residue was partitioned between DCM (550mL) and H20 (600mL) and the organic layer separated and concentrated in vacuo. Purification by column chromatography (EtOAcTH; 2:3) afforded the title compound: RT = 3.04 min; mlz (ES+) = 215.0 [M+ H]+.
Preparation 310: 2-Chloro-5-methoxy- rimidine-4-carboxylic acid ethyl ester
Figure imgf000166_0002
To a solution of 2-chloro-4-(l-ethoxy-vinyl)-5-methoxy-pyrimidine (Preparation 309, 4.00g, 18.6mmol) in 1,4-dioxane (300mL) was added a solution of potassium meta- periodate (8.57g, 37.3mmol) in H20 (90mL). Potassium permanganate (294mg, 1.86mmol) was added and the resulting reaction mixture stirred at r.t. for 30 min. The reaction mixture was poured into DCM (400mL) and the organic layer separated. The aqueous was extracted with DCM (2 x 400mL) and the combined organic extracts dried (MgS04), filtered and concentrated in vacuo to afford the title compound: RT = 2.84 min; mlz (ES ) = 217.1 [M +
H]+.
Preparation 311: [(3R,4S)-l-(4-Carbamoyl-5-methoxy-pyrimidin-2-yl)-4-(2,5-difluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-buty\ ester
Figure imgf000166_0003
To 2-chloro-5-methoxy-pyrimidine-4-carboxylic acid ethyl ester (Preparation 310, (1.3 lOg, 6.047mmol) at 0°C was added a solution of saturated aquoues ammonium hydroxide (20mL) and the resulting reaction mixture was stirred at r.t. for 1 h. The solvent was removed in vacuo and the remainder purified by preparative HPLC. The crude product was dissolved in DMSO (5mL). [(3i?,45)-4-(2,5-Difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 462mg, 1.55mmol) and DBU (0.77 lmL, 5.16mmol) were added and the resulting reaction mixture stirred at r.t. for 1 h and at 95°C for 3 h. The solvent was removed in vacuo and the remainder triturated with EtOAc and MeOH. The solid was collected by filtration to afford the title compound: RT = 3.40 min; mlz (ES ) =
Figure imgf000167_0001
Preparation 312: 2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]-5- hydroxy-pyrimidine-4-carboxylic acid amide
Figure imgf000167_0002
A mixture of [(3i?,45)-l-(4-carbamoyl-5-methoxy-pyrimidin-2-yl)-4-(2,5-difluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 311, 1.7g, 3.8mmol) and lithium iodide (6.00g, 44.8mmol) in 2-methylpyridine (30mL) in a sealed tube was heated at 120°C under microwave irradiation. The solvent was removed in vacuo and the remainder partitioned between EtOAc (lOOmL) and water (200mL). The layers were separated and the aqueous extracted with EtOAc (3 x 50mL). The combined organic extracts were washed with brine (50mL), dried (MgS04), filtered and concentrated in vacuo.
Purification by preparative HPLC afforded the title compound: RT = 2.23 min; mlz (ES ) =
Figure imgf000167_0003
Preparation 313: [(3R,4S)-l-(4-Carbamoyl-5-hydroxy-pyrimidin-2-yl)-4-(2,5-difluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-but \ ester
Figure imgf000167_0004
To a solution of 2-[(3i?,45)-3-amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]-5- hydroxy-pyrimidine-4-carboxylic acid amide (Preparation 312, 135mg, 0.403mmol) in THF (lO.OmL) was added triethylamine (112μΕ, 0.805mmol) and di-tert-butyldicarbonate (132mg, 0.604mmol). The resulting reaction mixture was heated at 100°C for 2 h. Upon cooling, the reaction mixture was partitioned between aqueous potassium carbonate solution (10%, 20mL) and EtOAc (lOOmL). The layers were separated and the aqueous phase extracted with EtOAc (2 x 20mL). The combined organic extracts were washed with brine (20mL), dried (MgS04), filtered and concentrated in vacuo. Purification by column chromatography (EtOAcTH; 1 :9 to 1 : 1) afforded the title compound: RT = 3.84 min; m/z
Figure imgf000168_0001
Preparation 314: [(3R,4S)-l-(4-Cyano-5-hydroxy-pyrimidin-2-yl)-4-(2,5-difluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-but \ ester
Figure imgf000168_0002
To a solution of [(3i?,45)-l-(4-carbamoyl-5-hydroxy-pyrimidin-2-yl)-4-(2,5-difluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 313, 85mg, 0.20mmol) in THF (5mL) at 0°C was added pyridine (63μΕ, 0.78mmol) and TFAA (1 ΙΟμΕ, 0.78mmol) and the resulting reaction mixture was stirred at 0°C for 10 min and at r.t. for 80 min. Further TFAA (55μί, 0.39mmol) was added and the reaction mixture stirred for 1 h. Aqueous potassium carbonate solution (10%, 20mL) and EtOAc (50mL) were added and the reaction mixture stirred vigorously for 10 min. The layers were separated and the aqueous layer was extracted with EtOAc (30mL). The combined organic extracts were washed with brine (30mL), dried (MgS04), filtered and concentrated in vacuo. Purification by column chromatography (DCM:MeOH; 95:5) afforded the title compound: RT = 3.87 min; m/z (ES ) = 418.38 [Μ+ ηγ. Preparation 315: [(3R,4S)-4-(2-Fluoro-5-methyl-phenyl)-l-(5-{(S)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-buty\ ester
Figure imgf000169_0001
To a solution of 2-chloro-5-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyrimidine (Preparation 63, 60mg, 0.17mmol) and [(3i?,45)-4-(2-fluoro-5- methyl-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 285, lOOmg, 0.3mmol) in DMSO (3.4mL) was added DBU (25.4μΕ, 0.17mmol) and the resulting reaction mixture was stirred at 90°C for 96 h. Upon cooling, the reaction mixture was partitioned between brine and EtOAc. The organic layer was separated, washed with brine (2 x) and concentrated in vacuo. Purification by preparative HPLC afforded the title compound: RT = 4.67 min; m/z (ES+) = 610.36 [M+ H]+.
Preparation 316: 2-Chloro-5-{l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-2- methoxy-ethoxy}-pyrimidine and 2-Bromo-5-{l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-yl]-2-methoxy-ethoxy}-pyrimidine
Figure imgf000169_0002
To a solution of l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]-2- methoxyethanol (Preparation 104, 3.477g, 12.91mmol), 2-chloro-pyrimidin-5-ol (1.45g, 1 l .lmmol), 2-bromo-pyrimidin-5-ol (0.88g, 16.1mmol) and PPh3 (6.77g, 25.8mmol) in THF (150mL) was added TBAD (5.94g, 25.8mmol) and the resulting reaction mixture was stirred at 60°C for 75 min. Further TBAD (2.97g, 12.9mmol) and PPh3 (3.39g, 12.9mmol) were added and the reaction mixture heated at 60°C for a further 30 min. The solvent was removed in vacuo, then the residue was dissolved in EtOAc and washed with water, aqueous NaOH solution (2M) and brine, dried (MgS04), filtered and concentrated in vacuo. The remainder was triturated with Et20, the precipitate collected by filtration and the filtrate was concentrated in vacuo. Purification by column chromotography (DCM then EtOAcTH; 1 : 1), followed by further purification by column chromotogrpahy (EtOAcTH; 2:3) afforded the title compound as an 11 :5 ratio of chloro:bromo isomers: RT = 3.67 min; mlz (ES ) = 382.10, 426.05, 428.05 [M+ H]+.
Preparation 317: [(3R,45)-l-(5-{l-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- 2-methoxy-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-buty\ ester
Figure imgf000170_0001
To a solution of 2-chloro-5-(2-methoxy-l-l-[3-(propan-2-yl)-l,2,4-oxadiazol-5- yl]piperidin-4-ylethoxy)pyrimidine (Preparation 316, 335mg, 0.877mmol), 2-bromo-5-(2- methoxy- 1-1 -[3-(propan-2-yl)- 1 ,2,4-oxadiazol-5-yl]piperidin-4-ylethoxy)pyrimidine
(Preparation 316, 170mg, 0.399mmol) and [(3i?,45)-4-(2,4,5-trifluorophenyl)pyrrolidin-3- yljcarbamic acid tert-butyl ester (Preparation 39, 0.484g, 1.53mmol) in DMSO (5mL) was added DBU (0.191mL, 1.28mmol) and the resulting reaction mixture was stirred at 80°C for 16 h. Further [(3i?,45)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 96mg, 0.30mmol) was added and the reaction mixture stirred at 80°C for 80 h. Upon cooling, the reaction mixture was poured into water and extracted with EtOAc (3 x). The combined organic extracts were dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotogrpahy (EtOAcTH; 1 : 1), followed by purification by preparative HPLC afforded the title compound: RT = 4.50 min; mlz (ES ) = 662.22 [M + H]+.
Preparation 318: 4-Oxiranyl-piperidine-l-carboxylic acid benzyl ester
Figure imgf000170_0002
The title compound was synthesized from 4-formyl-piperidine-l-carboxylic acid benzyl ester (15. Og, 60.6mmol) employing a procedure similar to that outlined in
Preparation 103: RT = 3.47 min; mlz (ES+) = 262.2 [M+ H]+. Preparation 319: 4-(l-Hydroxy-2-methoxy-ethyl)-piperidine-l-carboxylic acid benzyl ester
Figure imgf000171_0001
The title compound was synthesised from 4-oxiranyl-piperidine-l-carboxylic acid benzyl ester (Preparation 318, 7.0g, 27mmol) employing a procedure similar to that outlined in Preparation 104: RT = 0.92 min; mlz (ES+) = 294.3 [M+ H]+ (LCMS Method- 6).
Preparation 320: 4-[l-(2-Chloro-pyrimidin-5-yloxy)-2-methoxy-ethyl]-piperidine-l- carboxylic acid benzyl ester
Figure imgf000171_0002
The title compound was synthesized from 4-(l-hydroxy-2-methoxy-ethyl)-piperidine- 1-carboxylic acid benzyl ester (Preparation 319, l .Og, 3.4mmol) and 2-chloro-5- hydroxypyrimidine (0.556g, 4.26mmol) employing a procedure similar to that outlined in Preparation 316: RT = 1.23 min; mlz (ES+) = 406.4 [M+ H]+ (LCMS Method-6).
Preparation 321: 4-(l-{2-[(3R,4S)-3-ter^Butoxycarbonylamino-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-2-methoxy-ethyl)-piperidine-l-carboxylic acid benzyl ester
Figure imgf000171_0003
The title compound was synthesized from 4-[l-(2-chloro-pyrimidin-5-yloxy)-2- methoxy-ethyl]-piperidine-l-carboxylic acid benzyl ester (Preparation 320, l.OOg,
1.48mmol) and [(3i?,45)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 0.70 lg, 2.22mmol) employing a procedure similar to that outlined in Preparation 317: RT = 1.48 min; mlz (ES ) = 686.6 [M+ ] (LCMS Method-6).
Preparation 322: 4-((R)-l-{2-[(3R,4S)-3-tei-i-Butoxycarbonylamino-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-2-methoxy-ethyl)-piperidine-l-carboxylic acid benzyl ester
Figure imgf000172_0001
The title compound was isolated from 4-(l-{2-[(3i?,45)-3-fert-butoxycarbonylamino- 4-(2,4,5-trifluoro-phenyl)-pyrrolidin- 1 -yl]-pyrimidin-5-yloxy} -2-methoxy-ethyl)-piperidine- 1-carboxylic acid benzyl ester (Preparation 321) via chiral HPLC: (MeOH:THF; 80:20, 14ml/min, 250nm, RT = 7.5 min): RT = 1.48 min; mlz (ES+) = 686.6 [M+ H]+ (LCMS Method-6). The stereochemistry of * centre has been arbitrarily assigned.
Preparation 323: ((lS,25)-2-(5,5-Difluoro-2-oxo-piperidin-l-yl)-4-{5-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-ylmethoxy]-4-methyl-pyrimidin-2-yl}-cyclopentyl)- carbamic acid tert-buty\ ester
Figure imgf000172_0002
To a solution of 2-chloro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]-4-methylpyrimidine (Preparation 57, 150mg, 0.43mmol) and [(3S,4S)-4-(5,5- difluoro-2-oxopiperidin-l-yl)pyrrolidin-3-yl] carbamic acid tert-butyl ester (Preparation 93, 270mg, 0.85mmol) in DMSO (2.5mL) in a sealed tube was added DBU (64μΕ, 0.43mmol) and the resulting reaction mixture was stirred at 80°C for 120 h. Upon cooling, the reaction mixture was diluted with EtOAc, washed with aqueous citric acid solution (0.1M), saturated aqueous NaHC03 solution and brine, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotogrpahy (DCM:MeOH) afforded the title compound: RT = 3.93 min; mlz (ES+) = 635.24 [M+ Hf). Preparation 324: [(3R,4S)-4-(2,5-Difluoro-phenyl)-l-(5-{(S)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-4-methyl-pyrimidin-2-yl)-pyrrolidin-3- yl]-carbamic acid tert-but l ester
Figure imgf000173_0001
To a solution of methanesulfonic acid (i?)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl]ethyl ester (Preparation 129, 250mg, 1.7mmol) and 2-chloro-4- methylpyrimidin-5-ol (250mg, 1.7mmol) in DMA (15mL) in a sealed tube was added cesium fluoride (260mg, 1.7mmol) and the resulting reaction mixture was stirred at 65°C for 72 h. Further cesium fluoride (260mg, 1.7mmol) was added and the reaction mixture heated at 70°C for 24 h. Further cesium fluoride (260mg, 1.7mmol) was added and the reaction mixture heated at 80°C for 24 h. Upon cooling, the reaction mixture was diluted with EtOAc, washed with H20 (5 x 20mL) and brine (20mL), dried (MgS04), filtered and concentrated in vacuo. The remainder was dissolved in DMSO (2.5mL), [(3i?,45)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 143mg, 0.478mmol) and DBU (40.9μΕ, 0.273mmol) were added and the resulting reaction mixture stirred at 80°C for 16 h. Upon cooling, the reaction mixture was diluted with EtOAc, washed with aquoues citric acid solution (0.1M), saturated NaHC03 solution and brine, dried (MgS04), filtered and concentrated in vacuo to afford the title compound: RT = 4.70 min; m/z (ES+) = 628.16 [M+ H]+.
Preparation 325 : (3R,4S)-3-tert-Butoxycarbonylamino-4-(5-chloro-2-fluoro-phenyl)- pyrrolidine-l-carboxylic acid tert-but l ester
Figure imgf000173_0002
The title compound was synthesised in a multi-step synthesis from 5-chloro-2- fluorobenzaldehyde employing procedures similar to those outlined in the synthesis of
Preparation 44: RT = 4.40 min; m/z (ES+) = 415.12 [M+ H]+. Preparation 326: (3R,4S)-4-(5-Chloro-2-fluoro- henyl)-pyrrolidin-3-ylamine
Figure imgf000174_0001
The title compound was synthesised from (3i?,4S)-3-tert-butoxycarbonylamino-4-(5- chloro-2-fluoro-phenyl)-pyrrolidine-l-carboxylic acid tert-butyl ester (Preparation 325, 1.21g, 2.92mmol) employing a procedure similar to that outlined in Example 205: RT = 1.42 min; m/z (ES+) = 215.00 [M+ H]+.
Preparation 327: [(3R,45)-l-(5-{(S)-l-[l-(3-Ethyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4-(2-fluoro-5-methyl-phenyl)-pyrrolidin-3-yl]-carbamic acid terf-butyl ester
Figure imgf000174_0002
The title compound was synthesized from 2-chloro-5-{(5)-l-[l-(3-ethyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethoxy}pyrimidine (Preparation 102) and [(3R,4S)-4- (2-fluoro-5-methyl-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 285) employing a proceudure similar to that outlined in Prepartion 315: RT = 4.47 min; m/z
Figure imgf000174_0003
Preparation 328: [(3R,4S)-l-(5-Bromo-pyrimidin-2-yl)-4-(2,5-difluoro-phenyl)- pyrrolidin-3-yl]-carbamic acid tert-but \ ester
Figure imgf000174_0004
To a solution of 5-bromo-2-chloropyrimidine (l .Og, 5.17mmol) in DMSO (lOmL) was added [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 2.3 lg, 7.75mmol) and DBU (0.773mL, 5.17mmol) and the resulting reaction mixture was stirred at 80°C for 6 h. Upon cooling, the reaction mixture was poured into water (lOOmL) and extracted with EtOAc (75mL). The organic extract was washed with brine (25mL), dried (MgS04), filtered and concentrated in vacuo. Recrystallisation (EtOAc) afforded the title compound: RT = 4.32 min; mlz (ES+) = 455.0 [M+ H]+. Preparation 329: 4-Vinyl-piperidin -l-carboxylic acid benzyl ester
Figure imgf000175_0001
To a suspension of methyltriphenylphosphonium bromide (2.23g, 6.25mmol) in THF (75mL) at -20°C was added dropwise n-BuLi in hexane (1.6M, 3.90mL, 6.25mmol) and the resulting reaction mixture was stirred at -20°C for 30 min. A solution of 4-formyl-piperidine- 1-carboxylic acid benzyl ester (1.03g, 4.16mmol) in THF (9mL) was added and the reaction mixture warmed to r.t. and stirred for 1 h. The reaction mixture was poured into water (lOOmL) and extracted into Et20 (2 x 50mL). The combined organic extracts were dried (MgS04), filtered and concentrated in vacuo. The remainder was purified by column chromotogrpahy (IH:EtOAc; 4: 1) to afford the title compound: RT = 4.07 min; mlz (ES ) =
Figure imgf000175_0002
Preparation 330: 4-((JE)-2-{2-[(3R,4S)-3-tei'i-Butoxycarbonylamino-4-(2,5-difluoro- phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yl}-vinyl)-piperidine-l-carboxylic acid benzyl ester
Figure imgf000175_0003
4-Vinyl-piperidine- 1-carboxylic acid benzyl ester (Preparation 329, 109.0mg, 0.444mmol), [(3i?,45)-l-(5-bromo-pyrimidin-2-yl)-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-butyl ester (Preparation 328, lOlmg, 0.222mmol), Pd(PPh3)4 (25mg, 0.022mmol) and triethylamine (62μΕ, 0.444mmol) in DMF (0.5mL) in a sealed tube were heated at 115°C for 3 h..Upon cooling, the reaction mixture was partioned between water and Et20 and the organic layer dried (MgS04), filtered and concentrated in vacuo. The remainder was loaded onto a reverse phase silica column and eluted with MeOH:H20 (4: 1 to 9:1) to afford the title compound: RT = 4.75 min; mlz (ES ) = 620.51 [M+ H] .
Preparation 331 : {(3R,45)-4-(2,5-Difluoro-phenyl)-l- [5-(2-piperidin-4-yl-ethyl)- pyrimidin-2-yl]-pyrrolidin-3- l}-carbamic acid tert-buty\ ester
Figure imgf000176_0001
To a solution of 4-((E)-2-{2-[(3i?,45)-3-tert-butoxycarbonylamino-4-(2,5-difluoro- phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yl}-vinyl)-piperidine-l-carboxylic acid benzyl ester (Preparation 330, 82.0mg, 0.132mmol) in EtOH (lmL) was added a suspension of Pd/C (10%) in EtOH (lmL) and the resulting reaction mixture stirred under an atmosphere of hydrogen for 1.5 h. The reaction mixture was filtered through celite, washing with MeOH, and the filtrate concentrated in vacuo to afford the title compound: RT = 2.68 min; mlz (ES )
Figure imgf000176_0002
Preparation 332: [(3R,4S)-l-(5-{2-[l-(5-Chloro-pyrimidin-2-yl)-piperidin-4-yl]-ethyl}- pyrimidin-2-yl)-4-(2,5-difluoro- henyl)-pyrrolidin-3-yl]-carbamic acid tert-buty\ ester
Figure imgf000176_0003
To a solution of {(3i?,45)-4-(2,5-difluoro-phenyl)-l-[5-(2-piperidin-4-yl-ethyl)- pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 331, 64.0mg, 0.131mmol) in t-BuOH (2.5mL) in a sealed tube was added 2,5-dichloropyrimidine (19.6mg, 0.131mmol) and triethylamine (Ί9μΙ^, 0.567mmol). The resulting reaction mixture was heated under microwave irradiation at 110°C for 30 min. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M) and the basic fractions were concentrated in vacuo to afford the title compound: RT = 4.92 min; mlz (ES ) = 600.22 [Μ+ ηγ. Preparataion 333: [(3R,4S)-l-{5-[2-(l-Cyano-piperidin-4-yl)-ethyl]-pyrimidin-2-yl}-4- (2,5-difluoro-phenyl)-pyrrolidin-3- l]-carbamic acid tert-buty\ ester
Figure imgf000177_0001
To a solution of {(3i?,45)-4-(2,5-difluoro-phenyl)-l-[5-(2-piperidin-4-yl-ethyl)- pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 331, 102mg, 0.209mmol) in DCM (2mL) was added a solution of NaHC03 (52.7mg, 0.628mmol) in H20 (lmL) and the reaction mixture was cooled to 0°C. A solution of cyanogen bromide (24.4mg, 0.230mmol) in DCM (lmL) was added dropwise and the resulting reaction mixture was stirred at r.t. for 30 min. The reaction mixture was partitioned between DCM and water and the organic layer was dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotogrpahy (DCM:MeOH; 97.5:2.5) afforded the title compound: RT = 1.23 min; m/z (ES+) = 513.5 [M+ H]+ (LCMS Method - 6).
Preparation 334: [(c/s)-3-Fluoro-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- methanol
Figure imgf000177_0002
To a solution of (l-benzyl-5-fluoro-l,2,3,6-tetrahydro-pyridin-4-yl)-methanol (0.172g, 0.777mmol) in MeOH (3mL) was added Pd/C (10%) as a slurry in MeOH (2mL) and the resulting reaction mixture was stirred under an atmosphere of hydrogen for 16 h. The reaction mixture was filtered through celite and the filtrate concentrated in vacuo prior to purification by column chromatography (DCM:NH3 in MeOH (7M); 9: 1). The residue was dissolved in DCM (2mL), a solution of potassium carbonate (0.137g, 0.991mmol) in H20 (2mL) was added and the reaction mixture was cooled to 0°C. A solution of cyanogen bromide (38.5g, 0.363mmol) in DCM (0.5mL) was added dropwise and the reaction mixture stirred at 0°C for 30 min and at r.t for 1 h. The organic layer was separated, dried (MgS04), filtered and concentrated in vacuo. The remainder was dissolved in EtOH (8mL) and N- hydroxyisobutyramidine (32.5mg, 0.319mmol) was added, followed by zinc dichloride in Et20 (1M, 0.319mL, 0.319mmol). The reaction mixture was stirred at r.t. for 16 h. HC1 in 1,4-dioxane (4M, 0.332mL, 1.33mmol) was added and the reaction mixture stirred at 70°C for 5 h. The solvent was removed in vacuo and the remainder partitioned between DCM and water. The organic layer was dried (MgSC^), filtered and concentrated in vacuo. Purification by column chromatography (DCM:MeOH; 98:2) afforded the title compound: RT = 0.75 min; mlz (ES+) = 244.28 [M+ H]+ (LCMS Method - 6).
Preparation 335: 2-Chloro-5-[(cis)-3-fluoro-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-ylmethoxy]-pyrimidine
Figure imgf000178_0001
To a solution of [(cz5)-3-fluoro-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- methanol (Preparation 334, 65mg, 0.27mmol), 2-chloro-5-hydroxypyrimidine (35mg, 0.267mmol) and PPh3 (105mg, 0.401mmol) in THF (3mL) was added TBAD (92.3mg, 0.401mmol) and the resulting reaction mixture was stirred at 50°C for 4 h. Further PPh3 (25mg, 0.095mmol) and TBAD (25mg, 0.109mmol) were added and the resulting reaction mixture was stirred at 60°C for 2 h. Further PPh3 (25mg, 0.095mmol) and TBAD (25mg, 0.109mmol) were added and the resulting reaction mixture was stirred at 60°C for 1 h. The solvent was removed in vacuo and the remainder purified by column chromatography (DCM:MeOH; 98:2) to afford the title compound: RT = 1.07 min; mlz (ES+) = 356.31 [M + H]+ (LCMS Method - 6).
Preparation 336: [(3R,45)-l-{5-[(3R,4S)-3-Fluoro-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]- carbamic acid ieri-buty\ ester
Figure imgf000178_0002
A solution of 2-chloro-5-[(cz5)-3-fluoro-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-ylmethoxy]-pyrimidine (Preparation 335, 99mg, 0.28mmol), [(3R,4S)-4-(2,4,5- trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 0.176g, 0.556mmol) and DBU (41.6μΙ., 0.278mmol) in DMSO (l .OOmL) was stirred at 90°C for 16 h, then at 110°C for 8 h. Upon cooling, the reaction mixture was poured into water, extracted into EtOAc, washed with brine (2 x), dried (MgS04), filtered and concentrated in vacuo. Purification by column chromatography (EtOAc:IH) afforded [(cz5)-l-{5-[(3i?,45)-3- fluoro-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4- (2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester. Purification by chiral HPLC (MeOH:MTBE; 60:40, 15ml/min, 250nm) afforded the title compound: RT = 1.38 min; mlz (ES+) = 636.5 [M+ H]+ (LCMS Method - 6).
Preparation 337: [(3R,45)-l-{5-[(3S,4R)-3-Fluoro-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-ylmethoxy] -pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl] - carbamic acid tert-buty\ ester
Figure imgf000179_0001
The title compound was isolated from [(cz5)-l-{5-[(3i?,45)-3-fluoro-l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-3-yl]-carbamic acid tert-butyl ester (see Preparation 336) via chiral HPLC (MeOH:MTBE; 60:40, 15ml/min, 250nm): RT = 1.38 min; mlz (ES+) = 636.5 [M+ H]+ (LCMS Method - 6).
Preparation 338: [(c/s-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-3-methyl-piperidin-4-yl]- methanol
Figure imgf000179_0002
To a solution of cz's- l-N-Boc-3-methyl-piperidine-4-carboxylic acid (0.463g, 1.90mmol) in DMF (8mL) was added potassium carbonate (0.263g, 1.90mmol) followed by methyl iodide (0.142mL, 2.28mmol) and the reaction mixture was stirred at r.t. for lh. The mixture was poured into aqueous potassium carbonate (10%) and extracted with EtOAc (2 x 20mL). The combined organic extracts were washed with brine (2 x 25mL), dried (MgS04), filtered and concentrated in vacuo to afford (cz's)-3-methyl-piperidine-l,4-dicarboxylic acid 1 -tert-butyl ester 4-methyl ester. The intermediate was dissolved in THF (3mL), cooled to 0°C and LiAlH4 (73mg, 1.92mmol) in THF (3mL) was added. The resulting reaction mixture was warmed to r.t., Et20 (5mL) was added and the reaction mixture was cooled to 0°C prior to the addition of aqueous NaOH solution (15%, 73μί) and water (293μί). The reaction mixture was stirred at r.t. for 1 h prior to the addition of MgS04, then filtered and concentrated in vacuo to afford (cis)-4-hydroxymethyl-3-methyl-piperidine-l-carboxylic acid tert- vXy\ ester. This intermediate was dissolved in HCl in 1,4-dioxane (4M, 3.0mL, 12.0mmol) and the reaction mixture stirred at r.t. for 1 h. The solvent was removed in vacuo to afford ((cis)-3-methyl-piperidin-4-yl)-methanol hydrochloride. To a solution of this intermediate in DCM (5mL) at 0°C was added NaHC03 (0.608g, 7.24mmol) in H20 (5mL), followed by dropwise addition of a solution of cyanogen bromide (0.21 lg, 1.99mmol) in DCM (3mL). The resulting reaction mixture was stirred at 0°C for 1 h and at r.t. for 2 h. The organic phase was separated, dried (MgS04), filtered and concentrated in vacuo. The remainder was dissolved in EtOH (25mL) and N-hydroxyisobutyramidine (0.183g,
1.79mmol) was added, followed by zinc dichloride in Et20 (1M, 1.79mL, 1.79mmol). The reaction mixture was stirred at r.t. for 2 h, then HCl in 1,4-dioxane (4M, 1.86mL, 7.46mmol) was added and the reaction mixture was stirred at 70°C for 6 h. Upon cooling, the solvent was removed in vacuo and the residue partitioned between DCM and water. The organic layer was separated, dried (MgS04), filtered and concentrated in vacuo. The remainder was purified by column chromatography (DCM:MeOH; 97:3) to afford the title compound: RT = 0.80 min; mlz (ES+) = 240.4 [M+ H]+ (LCMS Method - 6).
Preparation 339: 2-Chloro-5-[(c/s)-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-3-methyl- piperidin-4-ylmethoxy]-pyrimidine
Figure imgf000180_0001
To a solution of [(cz'5-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-3-methyl-piperidin-4-yl]- methanol (Preparation 338, 0.106g, 0.443mmol), 2-chloro-5 -hydro xypyrimidine (57.8mg, 0.443mmol) and PPh3 (0.174g, 0.664mmol) in THF (5mL) was added TBAD (0. 153g, 0.664mmol) and the resulting reaction mixture was stirred at 50°C for 3 h. Upon cooling, the reaction mixture was partitioned between EtOAc (25mL) and water (25mL). The organic layer was separated, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromatography (IH:EtOAc; 3:2) afforded the title compound: RT = 1.17 min; mlz (ES+) = 352.3 [M+ H]+ (LCMS Method - 6). Preparation 340 : [(3R,4S)- 1-{5- [(cis)- l-(3-Isopropyl- [ 1 ,2,4] oxadiazol-5-yl)-3-methyl- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-buty\ ester
Figure imgf000181_0001
To a solution of 2-chloro-5-[(cz'5)-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-3-methyl- piperidin-4-ylmethoxy]-pyrimidine (Preparation 339, 89mg, 0.25mmol) and [(3R,4S)-4- (2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 0.16g, 0.50mmol) in DMSO (lmL) was added DBU (37.8μΙ., 0.253mmol) and the resulting reaction mixture was stirred at 70°C for 48 h. Further [(3R,4S)-4-(2,4,5- trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 0.1 Og,
0.31mmol) in DMSO (0.5mL) was added and the reaction mixture was stirred at 100°C for 16 h. Upon cooling, the reaction mixture was poured into water (25mL) and the suspension extracted with EtOAc. The organic extract was washed with brine (2 x lOmL), dried
(MgS04), filtered and concentrated in vacuo. Purification by column chromatography (IH:EtOAc; 2: 1), followed by further purification by preparative HPLC afforded the title compound: RT = 1.47 min; m/z (ES+) = 632.53 [M+ H]+ (LCMS Method - 6).
Preparation 341: [(3R,45)-l-[5-((S)-l-{l-[(R)-3-(Tetrahydro-furan-3-yl)- [l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-3-yl]-carba
Figure imgf000181_0002
To a solution of [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2- yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 206, 660mg, 1.21mmol) and N-hydroxytetrahydrofuran-3-carboxamidine (Preparation 168, 0.188g, 1.45mmol) in EtOH (0.72mL, 1.45mmol) was added zinc dichloride in EtOH (2M, 0.724mL, 1.45mmol) and the resulting reaction mixture was stirred at r.t. for 16 h. HC1 in 1 ,4-dioxane (4M, 1.51mL, 6.04mmol) was added and the reaction mixture was heated to 80°C for 6 h. Upon cooling, the reaction mixture was poured into DCM (200mL) and saturated aqueous NaHC03 solution (200mL). The organic layer was separated, dried (MgSC^), filtered and concentrated in vacuo to afford (3i?,45)-l -[5-((5)-l- { l-[3-(tetrahydro- mran-3-yl)-[l ,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-tri phenyl)-pyrrolidin-3-ylamine. The intermediate was dissolved in THF (15mL) and H20 (15mL) and triethylamine (0.252mL, 1.81mmol) and di-fert-butyldicarbonate (0.395g, 1.81mmol) were added. The resulting reaction mixture was stirred at r.t. for 16 h, then the THF was removed in vacuo. The aqueous residue was diluted with saturated aqueous citric acid solution (75mL) and extracted with DCM (2 x 150mL). The combined organic extracts were concentrated in vacuo and purified by column chromatography (EtOAcTH; 3 : 1) to afford [(3R.4S)- 1 -[5-((S)- 1 - { 1 -[3-(tetrahydro-furan-3-yl)-[l ,2,4]oxadiazol-5-yl]-piperidin-4- yl} -ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester. Purification by chiral HPLC (MTBE:THF; 75 :25, 12ml/min, 250nm, RT = 13.9 min) afforded the title compound: RT = 1.35 min; mlz (ES+) = 660.5 [M + H]+ (LCMS Method - 6).
Preparation 342: [(3R,45)-l-[5-((S)-l-{l-[(S)-3-(Tetrahydro-furan-3-yl)- [l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-3-yl]-carba
Figure imgf000182_0001
The title compound was isolated from [(3i?,45)-l-[5-((5)-l- {l -[3-(tetrahydro-furan-3- yl)-[l ,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (see Preparation 341) via chiral HPLC (MTBE:THF; 75 :25, 12ml/min, 250nm, RT = 12.2 min): RT = 1.35 min; mlz (ES+) = 660.5 [M + H]+ (LCMS Method - 6).
Preparation 343: 2-[4-((S)-l-{2-[(3R,4S)-3-tei-i-Butoxycarbonylamino-4-(2,5-difluoro- phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-oxazole-4-carboxylic acid ethyl ester
Figure imgf000183_0001
To a solution of {(3i?,45)-4-(2,5-difluoro-phenyl)-l-[5-((5)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 204, 250mg, 0.50mmol) and ethyl-2-chlorooxazole-4-carboxylate (109mg, 0.620mmol) in DMSO
(1.5mL, 21mmol) was added DIPEA (108μΕ, 0.620mmol) and the resulting reaction mixture was heated under microwave irradiation at 120°C for 30 min. The reaction mixture was partitioned between EtOAc (50mL) and water (30mL) and the organic layer separated, washed with brine (30mL), passed through a hydrophobic frit and concentrated in vacuo. Purification by column chromatography (IH:EtOAc; 1 :4 to 3:7) afforded the title compound: RT = 1.39 min; mlz (ES+) = 643.47 [M+ H]+ (LCMS Method - 6).
Preparation 344: 5-[4-((S)-l-{2-[(3R,4S)-3-tei-i-Butoxycarbonylamino-4-(2,5-difluoro- phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazole-3- carboxylic acid ethyl ester
Figure imgf000183_0002
The title compound was synthesized from {(3 ?,45)-4-(2,5-difluoro-phenyl)-l-[5-((5)- l-piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 204) and 5-trichloromethyl-[l,2,4]oxadiazole-3-carboxylic acid ethyl ester (Preparation 215) employing a procedure similar to that outlined in Preparation 216: RT = 1.37 min; mlz (ES+) = 644.42 [M + H]+ (LCMS Method - 6). Preparation 345: [(3R,4S)-l-(5-{(S)-l-[l-(3-Acetyl-[l,2,4]oxadiazol-5-yl)-piperidin-4- ethoxy}-pyrimidin-2-yl)-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester
Figure imgf000184_0001
To a solution of solution of 5-[4-((5)-l-{2-[(3i?,45)-3-fert-butoxycarbonylamino-4-
(2,5-difluoro-phenyl)-pyrrolidin-l -yl]-pyrimidin-5-yloxy} -ethyl)-piperidin- 1 -yl]- [l,2,4]oxadiazole-3-carboxylic acid ethyl ester (Preparation 344, 1.24g, 1.93mmol) in anhydrous THF (12mL) at -78°C was added methyl magnesium bromide (1.44mL,
4.33mmol) and the resulting reaction mixture was stirred between -75°C and -65°C for 4 h. The reaction was quenched with saturated aquoues NH4C1 solution (5mL) and warmed to r.t. The mixture was partitioned between EtOAc (25mL) and saturated aquoues NH4CI solution (25mL). The aqueous layer was separated and extracted with EtOAc (2 x 25mL). The combined organic extracts were passed through a hydrophobic frit and the solvent removed in vacuo. Purification by column chromotogrpahy (EtOAcTH; 35:65 to 3: 1) afforded the title compound: RT = 1.35 min; mlz (ES+) = 614.46 [M+ H]+ (LCMS Method - 6).
Preparation 346: {(3R,45)-4-(2,5-Difluoro-phenyl)-l-[5-((5)-l-{l-[3-(l-hydroxy-l- methyl-propyl)- [ 1 ,2,4] oxadiazol-5-yl] -piperidin-4-yl}-ethoxy)-pyrimidin-2-yl] - pyrrolidin-3-yl}-carbamic acid tert-but \ ester
Figure imgf000184_0002
To a solution of [(3i?,45)-l-(5-{(5)-l-[l-(3-acetyl-[l,2,4]oxadiazol-5-yl)-piperidin-4- yl]-ethoxy} -pyrimidin-2-yl)-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester (Preparation 345, 200mg, 0.326mmol) in THF (3mL) at -70°C was added ethyl magnesium chloride (1M in THF, 0.733mL, 0.733mmol) dropwise and the resulting reaction mixture was stirred at -78°C for 3 h. The reaction was quenched with saturated aqueous NH4CI solution (2mL) and the mixture allowed to warm to r.t. and then partitioned between saturated aqueous NH4C1 solution and EtOAc. The aqueous layer was separated and extracted with EtOAc. The combined organic extracts were passed through a hydrophobic frit and concentrated in vacuo. Purification by preparative HPLC afforded the title compound: RT = 1.32 min; mlz (ES+) = 644.49 [M+ H]+ (LCMS Method - 6).
Preparation 347: [(3R,45)-l-[5-((S)-l-{l-[3-(l-Cyclopropyl-l-hydroxy-ethyl)- [l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,5-difluoro-phenyl)- pyrrolidin-3-yl]-carbamic acid tert-but \ ester
Figure imgf000185_0001
The title compound was synthesised from [(3i?,45)-l-(5-{(5)-l-[l-(3-acetyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-4-(2,5-difluoro-phenyl)- pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 345) and
cyclopropylmagnesium bromide employing the procedure outlined in Preparation 346 = 1.35 min; mlz (ES+) = 656.49 [M+ H]+ (LCMS Method - 6).
Preparation 348: (R)-N-Hydroxy-2-methoxy-propionamidine
Figure imgf000185_0002
A solution of (2i?)-2-methoxypropanenitrile (lOOmg, l .Ommol) and hydro xylamine (50% aqueous solution, 86μΕ, 1.4mmol) in EtOH (5mL, 80mmol) were heated at 60°C for 4 h. The solvent was removed in vacuo to afford the title compound: RT = 0.65 min; mlz (ES+) = 119.01 [M+ H]+ (LCMS Method - 8).
Preparation 349: 3,N-Dihydroxy-2,2- imethyl-propionamidine
Figure imgf000185_0003
A solution of 3-hydroxy-2,2-dimethylpropanenitrile (0.500g, 5.04mmol) and hydroxylamine (50%> aqueous solution, 0.37 lmL, 6.05mmol) in EtOH (5.89mL) was heated at 60°C for 4 h. Further hydroxylamine (50% aqueous solution, 0.155mL, 2.52mmol) was added and the reaction mixture heated at 60°C for 3 h. The solvent was removed in vacuo to afford the title compound: 1H NMR δΗ (400MHz, CDC13): 8.90 (s, 1H), 5.25 (br. s, 2H), 4.61 - 5.58 (m, 1H), 3.39 - 3.37 (dd, 2H), 1.04 (s, 6H). Preparation 350: {(3R,45)-4-(2,5-Difluoro-phenyl)-l-[5-((S)-l-{l-[3-(l-hydroxy-l- methyl-ethyl)- [ 1 ,2,4] oxadiazol-5-yl] -piperidin-4-yl}-ethoxy)-pyrimidin-2-yl] -pyrrolidin- 3-yl}-carbamic acid terf-but l ester
Figure imgf000186_0001
The title compound was synthesized from 5-[4-((S)-l- {2-[(3R,4S)-3-tert- butoxycarbonylamino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)- piperidin-l-yl]-[l ,2,4]oxadiazole-3-carboxylic acid ethyl ester (Preparation 344) employing a procedure similar to that outlined in Preparation 217: RT = 1.32 min; m/z (ES ) = 630.52 [M + H]+ (LCMS Method - 6). Preparation 351: 4-((5)-l-{2-[(3R,4S)-3-te^Butoxycarbonylamino-4-(2,4-difluoro-5- methyl-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidine-l-carboxylic acid benzyl ester
Figure imgf000186_0002
A solution of 4-[(5)-l-(2-chloro-pyrimidin-5-yloxy)-ethyl]-piperidine-l-carboxylic acid benzyl ester (Preparation 183, 0.400g, 1.06mmol), [(3i?,45)-4-(2,4-difluoro-5-methyl- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 292, 0.399g,
1.28mmol) and DBU (0.159mL, 1.06mmol) in DMSO (2mL) in a sealed tube was heated at 80°C for 120 h. Upon cooling the reaction mixture was poured into H20 (50mL) and extracted with EtOAc (3 x 50mL). The combined organic extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromatography (EtOAcTH; 1 : 1) afforded the title compound: RT = 1.58 min; m/z (ES+) = 652.50 [M + H]+ (LCMS Method - 6).
Preparation 352: {(3R,45)-4-(2,4-Difluoro-5-methyl-phenyl)-l-[5-((S)-l-piperidin ethoxy)-pyrimidin-2-yl]-p rrolidin-3-yl}-carbamic acid tert-butyl ester
Figure imgf000187_0001
The title compound was synthesized from 4-((S)-l-{2-[(3R,4S)-3-tert- butoxycarbonylamino-4-(2,4-difluoro-5 -methyl-phenyl)-pyrrolidin- 1 -yl] -pyrimidin-5 - yloxy}-ethyl)-piperidine-l-carboxylic acid benzyl ester (Preparation 351, (0.600g,
0.921mmol) employing a method similar to that outlined in Preparation 185: RT = 0.90 min; m/z (ES+) = 518.45 [M+ H]+ (LCMS Method - 6).
Preparation 353: 5-[4-((5)-l-{2-[(3R,4S)-3-tei-i-Butoxycarbonylamino-4-(2,4-difluoro-5- methyl-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-
[1,2,4] oxadiazole-3-car xylic acid ethyl ester
Figure imgf000187_0002
The title compound was synthesized from {(3i?,45)-4-(2,4-difluoro-5-methyl- phenyl)- 1 -[5-((5)-l -piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-yl} -carbamic acid tert-butyl ester (Preparation 352) and 5-trichloromethyl-[l,2,4]oxadiazole-3-carboxylic acid ethyl ester (Preparation 215) employing a procedure similar to that outlined in Preparation 216: RT = 1.44 min; m/z (ES+) = 658.48 [M+ H]+ (LCMS Method - 6).
Preparation 354: {(3R,45)-4-(2,4-Difluoro-5-methyl-phenyl)-l-[5-((S)-l-{l-[3-(l- hydroxy-l-methyl-ethyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]- pyrrolidin-3-yl}-carb
Figure imgf000187_0003
The title compound was synthesized from 5-[4-((S)-l-{2-[(3R,4S)-3-tert- butoxycarbonylamino-4-(2,4-difluoro-5 -methyl-phenyl)-pyrrolidin- 1 -yl] -pyrimidin-5 - yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazole-3-carboxylic acid ethyl ester (Preparation 353) employing a procedure similar to that outlined in Preparation 217: RT = 1.32 min; mlz (ES+) = 644.52 [M + H]+ (LCMS Method - 6).
Preparation 355: 4-Fluoro-benzoic acid 1-carboxy-cyclopropyl ester
Figure imgf000188_0001
To a solution of 1 -hydroxy- 1-cyclopropanecarboxylic acid (0.500g, 4.90mmol) in pyridine (1.25mL) and chloroform (lmL) at 0°C was added 4-fluoro-benzoyl chloride (0.608mL, 5.14mmol) and the resulting reaction mixture was heated at 70°C for 40 min. Upon cooling, the reaction mixture was poured into water (20mL) and extracted with chloroform (3 x 15mL). The combined organic extracts were washed with 2M HCl (20mL) and then extracted into saturated aqueous NaHC03 solution (2 x 20mL). The combined NaHC03 extracts were aj dusted to pH 1 with 12M HCl and then extracted into chloroform (3 x 20mL). The combined organic extracts were passed through a hydrophobic frit and the solvent removed in vacuo. Purification by column chromatography (EtOAcTH; 1 :9 to 3: 10) afforded the title compound: RT = 0.94 min; mlz (ES~) = 223.18 [M - H]+ (LCMS Method - 6).
Preparation 356: 4-Fluoro-benzoic acid 1-carbamoyl-cyclopropyl ester
Figure imgf000188_0002
To a solution of 4-fluoro-benzoic acid 1-carboxy-cyclopropyl ester (Preparation 355, 0.423g, 1.89mmol) in THF (13mL) was added EDCI (0.434g, 2.26mmol) and HOBt and the resulting reaction mixture was stirred at r.t. for 10 min. NH3 in 1,4-dioxane (0.5M,
37.74mL, 18.87mmol) was added and the reaction mixture stirred at r.t. for 72 h. The solvent was removed in vacuo and the remainder partitioned between water (lOOmL) and EtOAc (200mL). The organic layer was separated and washed with saturated aqueous NaHC03 solution and brine, dried (MgS04), filtered and concentrated in vacuo: RT = 0.82 min; mlz (ES+) = 224.19 [M+ Hf (LCMS Method - 6).
Preparation 357: 4-Fluoro-benzoic acid l-(5-trichloromethyl-[l,2,4]oxadiazol-3-yl)- cyclopropyl ester
Figure imgf000189_0001
To a solution of 4-fluoro-benzoic acid 1-carbamoyl-cyclopropyl ester (Preparation 356, 0.290g, 1.30mmol) in THF (lOmL) at 0°C was added triethylamine (0.54mL, 3.9mmol) followed by TFAA (0.28mL, 1.9mmol) and the resulting reaction mixture was stirred for 1 h. The reaction was quenched with water (50mL), extracted into DCM (2 x 70mL) and the combined organic extracts were passed through a hydrophobic frit and concentrated in vacuo. The remainder was dissolved in EtOH (lOmL) and hydroxylamine (50% aqueous solution, 87.6μί, 1.43mmol) was added. The resulting reaction mixture was heated at 60°C for 1.5 h, then the solvent removed in vacuo. The remainder was dissolved in toluene (20mL), perchloroacetic anhydride (0.237mL, 1.30mmol) was added and the reaction mixture heated at 90°C for 3 h. The solvent was removed in vacuo and the remainder purified by column chromatography (EtOAcTH; 5:95) to afford the title compound: RT = 1.42 min; m/z (ES+) = 365.07 [M+U]+ (LCMS Method - 6).
Preparation 358: 4-Fluoro-benzoic acid l-{5-[4-((5)-l-{2-[(3R,4S)-3-tert- butoxycarbonylamino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}- ethyl)-piperidin- 1- l] - [ 1 ,2,4] oxadiazol-3-yl}-cyclopropyl ester
Figure imgf000189_0002
A solution of {(3i?,45)-4-(2,5-difluoro-phenyl)-l-[5-((5)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 204, 0.276g, 0.547mmol) and 4-fluoro-benzoic acid l-(5-trichloromethyl-[l,2,4]oxadiazol-3-yl)- cyclopropyl ester (Preparation 357, O. lOOg, 0.274mmol) in DMSO (lmL) was stirred at r.t. for 16 h. The reaction mixture was poured into water (50mL) and extracted with EtOAc (3 x 50mL). The combined organic extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotogrpahy (EtOAc) afforded the title compound: RT = 1.55 min; mlz (ES+) = 750.50 [M+U]+ (LCMS Method - 6).
Preparation 359: Benzoic acid 1-cyan -cyclobutyl ester
Figure imgf000190_0001
To a solution of a-oxobenzeneacetonitrile (4.00g, 30.5mmol) and cyclobutanone
(4.02mL, 61. Ommol) in toluene (30mL) was added DBU (0.182mL) and the resulting reaction mixture was stirred at r.t. for 20 h. The solvent was removed in vacuo and the residue purified by column chromotogrpahy (EtOAc:IH; 5:95) to afford the title compound: 1H NMR δΗ (400 MHz, CDC13): 8.04 - 8.10 (m, 2 H), 7.62 - 7.68 (m, 1 H), 7.48 - 7.55 (m, 2 H), 2.90 - 3.02 (m, 2 H), 2.57 - 2.71 (m, 2 H), 2.17 - 2.29 (m, 1 H), 2.09 - 2.17 (m, 1 H).
Preparation 360: Benzoic acid l-(5-trichloromethyl-[l,2,4]oxadiazol-3-yl)-cyclobutyl ester
Figure imgf000190_0002
To a suspension of benzoic acid 1-cyano-cyclobutyl ester (Preparation 359, 3.84g,
19.1mmol) in EtOH (50mL) was added hydroxyl amine (50% aqueous solution, 1.29mL, 21.Ommol) and the resulting reaction mixture was heated at 70°C for 2.5 h. The solvent was removed in vacuo and the remainder suspended in toluene (50mL). Perchloroacetic anhydride (3.49mL, 19.1mmol) was added and the reaction mixture heated under reflux conditions for 3h. The solvent was removed in vacuo and the remainder purified by column chromatography (EtOAcTH; 0: 1 to 5:95) to afford the title compound: RT = 1.47 min; mlz (ES+) = 361.11 [Μ+ηγ (LCMS Method - 6).
Preparation 361: Benzoic acid l-{5-[4-((S)-l-{2-[(3R,4S)-3-ter )utoxycarbonylamino-4- (2,5-difluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]- [1,2,4] oxadiazol-3-yl}-cyclobutyl ester
Figure imgf000190_0003
A solution of {(3i?,45)-4-(2,5-difluoro-phenyl)-l-[5-((5)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 204, 0.20g, 0.397mmol) and benzoic acid l-(5-trichloromethyl-[l,2,4]oxadiazol-3-yl)-cyclobutyl ester (Preparation 360, 0.215g, 0.596mmol) in DMF (0.8mL) was heated at 50°C for 5 h. The solvent was removed in vacuo and the resisdue purified by preparative HPLC to afford the title compound: RT = 1.60 min; m/z (ES+) = 746.52 [M+H]+ (LCMS Method - 6).
Preparation 362: {(3R,45)-4-(2,5-Difluoro-phenyl)-l-[5-((S)-l-{l-[3-(l-hydroxy- cyclobutyl)- [ 1 ,2,4] oxadiazol-5-yl] -piperidin-4-yl}-ethoxy)-pyrimidin-2-yl] -pyrrolidin-3- yl}-carbamic acid tert-but l ester
Figure imgf000191_0001
To a solution of benzoic acid l-{5-[4-((5)-l-{2-[(3i?,45)-3-tert- butoxycarbonylamino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)- piperidin-l-yl]-[l,2,4]oxadiazol-3-yl} -cyclobutyl ester (Preparation 361, 80mg, O. l lmmol) in THF (2mL), MeOH (lmL) and H20 (lmL) was added lithium hydroxide monohydrate (5.4mg, 0.13mmol) and the resulting reaction mixture was stirred at r.t. for 2 h. Further lithium hydroxide monohydrate (5.4mg, 0.13mmol) was added and the reaction mixture heated at 50°C for 1.5 h. The solvent was removed in vacuo and the remainder partitioned between DCM (20mL) and water (lOmL). The organic layer was passed through a hydrophobic frit and the solvent removed in vacuo to afford the title compound: RT = 1.29 min; m/z (ES+) = 642.52 [M+H]+ (LCMS Method - 6).
Preparation 363: Benzoic acid l-{5-[4-((S)-l-{2-[(3R,4S)-3-tert-butoxycarbonylamino-4- (2,4,5-trifluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]- [1,2,4] oxadiazol-3- l}-cyclobutyl ester
Figure imgf000191_0002
The title compound was synthesized from [(3 ?,45)-l-[5-((5)-l-piperidin-4-yl- ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185, 0.88g, 1.7mmol) and benzoic acid l-(5-trichloromethyl- [l,2,4]oxadiazol-3-yl)-cyclobutyl ester (Preparation 360, 0.303g, 0.839mmol) employing a procedure similar to that outlined in Preparation 358: RT = 1.61 min; mlz (ES ) = 764.54 [M+H]+ (LCMS Method - 6).
Preparation 364: 3,N-Dihydroxy-3-meth l-butyramidine
Figure imgf000192_0001
A solution of hydroxylamine (50% aqueous solution, 1.24mL, 40.4mmol) and 3- hydroxy-3-methyl-butyronitrile (lg, lO. lmmol) in EtOH (lOmL) was stirred at r.t. for 1.5 h. The solvent was removed in vacuo, azeotroping with toluene, to afford the title compound: 1H NMR δΗ (400MHz, CDC13): 2.53 (s, 2H), 1.42 (s, 6H).
Preparation 365: [(3R,45)-4-(2,5-Difluoro-phenyl)-l-(5-{(S)-l-[l-(2H-tetrazol-5-yl)- piperidin-4-yl]-ethoxy}- rimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester
Figure imgf000192_0002
To a solution of [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2- yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 205, 300mg, 0.6mmol) in DMF (5mL) was added ammonium chloride (47mg, 0.87mmol) and sodium azide (57mg, 0.87mmol) and the resulting reaction mixture was stirred at r.t. for 15 min and at 100°C for 7 h. Uon cooling, the reaction mixture was diluted with water (lOmL) and brine (lOmL) and extracted with EtOAc (2 x 20mL). The combined organic extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo. The remainder was purified by preparative HPLC to afford the title compound: RT = 1.14 min; mlz (ES ) = 572.45 [M+H]+ (LCMS Method - 6). Preparation 366 : 2- {5- [4-((S> 1- {2- [(3R,4S)-3-tei-i-Butoxycarbonylamino-4-(2,5-difluoro- phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-tetrazol-2-yl}-2- methyl-propionic acid eth l ester
Figure imgf000193_0001
[(3i?,45)-4-(2,5-Difluoro-phenyl)- 1 -(5- {(S)- 1 -[ 1 -(2H-tetrazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 365, 0.126g, 0.220mmol), 2-bromo-2-methyl-propionic acid ethyl ester (98.5μί, 0.661mmol), potassium iodide (3.7mg, 22μmol) and triethylamine (0.50mL) in DMF (0.50mL) were heated at 70°C for 16 h. Upon cooling, the reaction mixture was partitioned between EtOAc and water and the organic layer separated, washed with brine (2 x), passed through a hydrophobic frit and concentrated in vacuo. Purification by preparative HPLC afforded the title compound: RT = 1.51 min; m/z (ES+) = 686.52 [M+H]+ (LCMS Method - 6).
Preparation 367: {(3R,45)-4-(2,5-Difluoro-phenyl)-l-[5-((5)-l-{l-[2-(2-hydroxy-l,l- dimethyl-ethyl)-2H-tetrazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3- yl}-carbamic acid tert-but l ester
Figure imgf000193_0002
To a solution of 2-{5-[4-((5)-l-{2-[(3i?,45)-3-tert-butoxycarbonylamino-4-(2,5- difluoro-phenyl)-pyrrolidin- 1 -yl] -pyrimidin-5 -yloxy} -ethyl)-piperidin- 1 -yl] -tetrazol-2-yl}-2- methyl-propionic acid ethyl ester (Preparation 366, 65mg, 95μιηο1) in THF (2mL) at -20°C was added L1AIH4 in THF (1M, 95μΙ^, 95μιηο1) and the resulting reaction mixture stirred at - 20°C for 1 h. The reaction mixture was quenched with saturated aqueous NH4CI solution and extracted into EtOAc. The organic layer was separated, passed through a hydrophobic frit and concentrated in vacuo. Purification by column chromotogrpahy (IH:EtOAc; 2: 1 to 1 :1) afforded the title compound: RT = 1.32 min; m/z (ES+) = 644.48 [M +H]+ (LCMS Method - 6). Preparation 368: (R)-l-(3-Fluoro-pyridin-4-yl)-ethanol =/ OH
To a solution of diphenyl[(2S)-pyrrolidin-2-yl]methanol (0.50g, 2.0mmol) in THF (22.1mL) was added boric acid, trimethyl ester (0.27mL, 2.4mmol) and the resulting reaction mixture stirred at r.t. for 1 h. Borane dimethyl sulfide ((3.76mL, 39.7mmol) was added dropwise and the reaction mixture stirred for 15 min prior to the dropwise addition of l-(3- fluoropyridin-4-yl)ethanone (2.76g, 19.8mmol) in THF (22mL) over 1 h. The reaction mixture was stirred at r.t. for 90 min and then quenched with aqueous HCl (12M) and stirred for 30 min. The mixture was adjusted to pH 8 with saturated aquoues NaHC03 solution, extracted with EtOAc (2 x 50mL) and the combined organic extracts passed through a hydrophobic frit and concentrated in vacuo. Purification by column chromatography (DCM:MeOH) afforded the title compound: RT = 0.43 min; mlz (ES+) = 142.09 [M+H]+ (LCMS Method - 6).
Preparation 369: l-Benzyl-3-fluoro-4-((R)-l-h droxy-ethyl)-pyridinium bromide
Figure imgf000194_0001
To a solution of (i?)-l-(3-fluoro-pyridin-4-yl)-ethanol (Preparation 368, 2.20g, 15.6mmol) in acetone (35mL) was added benzyl bromide (2.04mL, 17.1mmol) and the resulting reaction mixture heated under reflux conditions for 10 h. The solvent was removed in vacuo to afford the title compound: RT = 0.48 min; mlz (ES+) = 232.18 [M ]+ (LCMS Method - 6).
Preparation 370: (R)-l-(l-Benzyl-5-fluoro-l,2,3,6-tetrahydro-pyridin-4-yl)-ethanol
Figure imgf000194_0002
To a solution of 1 -benzyl-3-fluoro-4-((i?)- 1 -hydroxy-ethyl)-pyridinium bromide
(Preparation 369, 4.86g, 15.6mmol) in MeOH (80mL) at 0°C was added sodium
borohydride (1.92g, 50.6mmol) portionwise and the resulting reaction mixture was stirred at r.t. for 16 h. The solvent was removed in vacuo, the remainder partitioned between EtOAc (50mL) and water (50mL) and the organic layer separated, dried (MgS04) and concentrated in vacuo. Purification by column chromotogrpahy (IH:EtOAc; 2:1) afforded the title compound: RT = 0.50 min; mlz (ES+) = 236.22 [M+U]+ (LCMS Method - 6). Preparation 371: (R)-l-[(cw)-l-(3-Ethyl-[l,2,4]oxadiazol-5-yl)-3-fluoro-piperidin-4-yl]- ethanol
Figure imgf000195_0001
The title compound was synthesized from (i?)-l-(l-benzyl-5-fluoro-l,2,3,6- tetrahydro-pyridin-4-yl)-ethanol (Preparation 370) and N-hydroxypropionamidine employing a procedure similar to that outlined in Prepartion 334: RT = 0.72 min; mlz (ES ) = 244.24 [Μ+ηγ (LCMS Method - 6).
Preparation 372: Methanesulfonic acid (R)-l-[(ci's)-l-(3-ethyl-[l,2,4]oxadiazol-5-yl)-3- fluoro-piperidin-4-yl] -ethyl ester
Figure imgf000195_0002
To a solution of (i?)-l-[(c 5)-l-(3-ethyl-[l,2,4]oxadiazol-5-yl)-3-fluoro-piperidin-4- yl]-ethanol (Preparation 371, 0.184g, 0.756mmol) and triethylamine (0.21 lmL, 1.51mmol) in DCM (lOmL) at 0°C was added dropwise methanesulfonyl chloride (70.2μΕ, 0.908mmol) and the resulting reaction mixture was stirred at 0°C for 15 min and at r.t. for 30 min. The reaction mixture was washed with saturated aquoues NaHC03 solution (2 x lOmL), passed through a hydrophobic frit and concentrated in vacuo. Purification by column
chromatography (DCM:MeOH; 99: 1) afforded the title compound: RT = 0.89 min; mlz (ES+) = 322.25 [M+H]+ (LCMS Method - 6). Preparation 373: 2-Chloro-5-{(5)-l-[(cw)-l-(3-ethyl-[l,2,4]oxadiazol-5-yl)-3-fluoro- piperidin-4-yl]-ethoxy}-pyrimidine
Figure imgf000195_0003
A solution of methanesulfonic acid (i?)-l-[(cz'5)-l-(3-ethyl-[l,2,4]oxadiazol-5-yl)-3- fluoro-piperidin-4-yl] -ethyl ester (Preparation 372, 0.230g, 0.716mmol), 2-chloro-5- hydroxypyrimidine (96.2mg, 0.737mmol) and cesium fluoride (0.112g, 0.737mmol) in DMA (7mL) was heated at 60°C for 16 h. Further cesium fluoride (0.112g, 0.737mmol) was added and the reaction mixture was heated at 60°C for 16 h. Further cesium fluoride (0.112g, 0.737mmol) was added and the reaction mixture was heated at 60°C for 16 h. The reaction mixture was partitioned between EtOAc (20mL) and water (20mL) and the organic layer was separated, washed with brine, dried (MgS04), filtered and concentrated in vacuo. The remainder was dissolved in DMA (5mL) and cesium fluoride (0.112g, 0.737mmol) was added and the reaction mixture heated at 60°C for 16 h. Further cesium fluoride (0.112g, 0.737mmol) was added and the reaction mixture was heated at 60°C for 16 h. Further cesium fluoride (0.112g, 0.737mmol) was added and the reaction mixture was heated at 60°C for 16 h. The reaction mixture was partitioned between water (20mL) and EtOAc (20mL) and the organic layer was separated, washed with brine, dried (MgS04), filtered and concentrated in vacuo. The remainder was purified by column chromatography (DCM:MeOH; 99: 1) and further purified by preparative HPLC to afford the title compound: RT = 1.04 min; mlz (ES ) = 356.23 [Μ+Ή]+ (LCMS Method - 6).
Preparation 374: [(3R,45)-l-(5-{(S)-l-[(3S,4R)-l-(3-Ethyl-[l,2,4]oxadiazol-5-yl)-3- fluoro-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3- yl]-carbamic acid tert-buty\ ester
Figure imgf000196_0001
A solution of 2-chloro-5-{(5)-l-[(cz5)-l-(3-ethyl-[l,2,4]oxadiazol-5-yl)-3-fluoro- piperidin-4-yl]-ethoxy}-pyrimidine (Preparation 373, 21mg, 59μιηο1), [(3i?,45)-4-(2,4,5- trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 98mg, 0.31mmol) and DBU (17.6μΕ, 0.118mmol) in DMSO (lmL) was heated at 80°C for 16 h then at 90°C for 8 h. Upon cooling, water (lOmL) and EtOAc (lOmL) were added and the organic phase separated, washed with brine, dried (MgS04), filtered and concentrated in vacuo. The remainder was purified by column chromotogrpahy (DCM:MeOH; 99: 1) and further purified by chiral HPLC (MTBE:MeOH:THF; 75:20:5, 14ml/min, 250nm) to afford the title compound: RT = 1.36 min; mlz (ES+) = 636.43 [M+H]+ (LCMS Method - 6). Preparation 375: [(3R,4S)-l-(5-{(S)-l-[(3R,4S)-l-(3-Ethyl-[l,2,4]oxadiazol-5-yl)-3- fluoro-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3- yl]-carbamic acid tert- ty\ ester
Figure imgf000197_0001
The title compound was synthesised employing the procedure outlined in Example 374: RT = 1.36 min; m/z (ES+) = 636.43 [M+U]+ (LCMS Method - 6).
Preparation 376: [(3R,45)-l-{5-[(S)-l-(l-Benzooxazol-2-yl-piperidin-4-yl)-ethoxy]- pyrimidin-2-yl}-4-(2,5-difluoro- henyl)-pyrrolidin-3-yl]-carbamic acid terf-butyl ester
Figure imgf000197_0002
A mixture of {(3i?,45)-4-(2,5-difluoro-phenyl)-l-[5-((5)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 204, 50mg, O.lmmol), 2-chlorobenzoxazole (20mg, O.lmmol), sodium tertiary butoxide (14mg,
0.15mmol) and (l,l'bis-(diphenylphosphino)-ferrocene) palladium dichloride (14mg, 20μmol) in toluene (2.5mL) was heated under microwave irradiation at 130°C for 60 min. The solvent was removed in vacuo and the remainder purified by preparative HPLC to afford the title compound: RT = 1.46 min; m/z (ES+) = 621.46 [M+H]+ (LCMS Method - 6).
Preparation 377: [(3R,45)-l-(5-{(S)-l-[l-(3-Acetyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester
Figure imgf000197_0003
The title compound was synthesized from 5-[4-((S)-l-{2-[(3R,4S)-3-tert- butoxycarbonylamino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy} -ethyl)- piperidin-l-yl]-[l,2,4]oxadiazole-3-carboxylic acid ethyl ester (Preparation 26) employing a procedure similar to that outlined in Preparation 344: RT = 1.37 min; mlz (ES ) = 632.5 [M+H]+ (LCMS Method - 6). Preparation 378: [(3R,45)-l-[5-((S)-l-{l-[3-(l-Cyclopropyl-l-hydroxy-ethyl)-
[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-3-yl]-carba
Figure imgf000198_0001
The title compound was synthesised from [(3R,4S)-l-(5-{(S)-l-[l-(3-acetyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 377) and
cyclopropylmagnesium bromide employing the procedure outlined in Preparation 346: RT = 1.37 min; mlz (ES+) = 674.5 [M+ H]+ (LCMS Method - 6). Preparation 379: 7-Benzyl-3-oxa-7-aza-bic clo[3.3.1]nonan-9-one
Figure imgf000198_0002
To a solution of tetrahydropyron-4-one (24g, 240mmol) and paraformaldehyde (18g, 600mmol) in IPA (600mL) at 65 °C was added a solution of benzylamine (28.8mL,
264mmol) and acetic acid (15.2mL, 264mmol) in IPA (600mL) dropwise over 1.5 h and the resulting reaction mixture was stirred at 65 °C for 1 h. Upon cooling, the solvent was removed in vacuo, the remainder diluted with water (1 L) and aqueous HCl (IM, 90mL), and extracted with Et20 (2 x lOOmL). The aqueous was basified to pH 13 with aqueous NaOH solution (IM, 2L) and extracted with EtOAc (3 x). The combined EtOAc extracts were dried (MgS04), filtered and concentrated in vacuo to afford the title compound: RT = 0.74 min; mlz (ES+) = 232.1 [M+ H]+ (LCMS Method - 2). Preparation 380: 7-Benzyl-3-oxa-7-aza- icyclo[3.3.1]nonane-9-carbonitrile
To a solution of 7-benzyl-3-oxa-7-aza-bicyclo[3.3.1]nonan-9-one (Preparation 379, lOg, 43.3mmol) and toluene sulfonyl methyl isocyanide (1 lg, 103.9mmol) in DME (146mL) and EtOH (4mL) at 0°C was added potassium tertiary butoxide (11.65g, 103.9mmol) portionwise over 20 min and the resulting reaction mixture was stirred at 0°C for 1.5 h, then at 40°C for 1 h. Upon cooling, the reaction mixture was filtered and the filtrate concentrated in vacuo. The remainder was dissolved in EtOAc, washed with water and brine, dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotogrpahy (DCM:MeOH; 97:3 to 5:95 to 1 :9) afforded the title compound: RT = 2.51 min; mlz (ES+) = 243.2 [M+ H]+ (LCMS Method - 4).
Preparation 381: 7-Benzyl-3-oxa-7-aza-bicyclo[3.3.1]nonane-9-carboxylic acid ethyl ester
Figure imgf000199_0002
A solution of 7-benzyl-3-oxa-7-aza-bicyclo[3.3.1]nonane-9-carbonitrile
(Preparation 380, 10. Og, 41.3mmol) in aqueous HC1 (12M, 80mL) was heated under reflux conditions for 6 h. The solvent was removed in vacuo and the remainder dissolved in EtOH (lOOmL) and concentrated aqueous sulphuric acid (few drops) and heated under reflux conditions for 20 h. The reaction mixture was concentrated to one quarter of the original volume, poured into saturated aqueous NaHC03 solution and extracted with EtOAc. The organic extract was washed with brine, dried (MgS04), filtered and concentrated in vacuo to afford the title compound: RT = 2.99 min; mlz (ES+) = 290.2 [M+ H]+ (LCMS Method - 4). Preparation 382: (7-Benzyl-3-oxa-7-aza-bic clo[3.3.1]non-9-yl)-methanol
Figure imgf000199_0003
To a suspension of lithium aluminium hydride (10.26g, 0.27mmol) in THF (140mL) at 0°C was added a solution of 7-benzyl-3-oxa-7-aza-bicyclo[3.3.1]nonane-9-carboxylic acid ethyl ester (Preparation 381, 19.5g, 67.47mmol) in THF (160mL) over 40 min. The resulting reaction mixture was heated at 60°C for 4.5 h. The reaction mixture was cooled to 0°C and Na2S04.H20 was added portionwise until all effervescence ceased. EtOAc was added and the mixture filtered through celite, washing with EtOAc, and the filtrate concentrated in vacuo to afford the title compound: RT = 2.25 min; mlz (ES+) = 248.2 [M + H]+ (LCMS Method - 4).
Preparation 383: (3-Oxa-7-aza-bicyclo[3.3.1]non-9-yl)-methanol
Figure imgf000200_0001
To a solution of (7-benzyl-3-oxa-7-aza-bicyclo[3.3.1]non-9-yl)-methanol
(Preparation 382, 2.2g, 9.1mmol) in IMS was added Pd/C (5%) and the resulting reaction mixture was stirred under an atmosphere of hydrogen at r.t. for 16 h. The reaction mixture was filtered through celite, washing with IMS, and the filtrate concentrated in vacuo to afford the title compound: 1H NMR δΗ (300MHz, CDC13): 4.2-3.8 (m, 6H), 3.4-3.15 (m, 2H), 3.15-2.95 (m, 2H), 2.5-2.2 (m, 4H), 1.6-1.5 (m, 1H).
Preparation 384: 9-Hydroxymethyl-3-oxa-7-aza-bic clo[3.3.1]nonane-7-carbonitrile
Figure imgf000200_0002
To a solution of (3-oxa-7-aza-bicyclo[3.3.1]non-9-yl)-methanol (Preparation 383, 4.05g, 17.7mmol) in DCM (35mL) at 0°C was added NaHC03 (4.46g, 53.1mmol) and H20 (35mL). A solution of cyanogen bromide (2.25g, 21.3mmol) in DCM (15mL) was slowly added and the resulting reaction mixture stirred at 0°C for 45 min, then at r.t. for 16 h. The reaction mixture was extracted with DCM (3 x) and the combined organic extracts dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotogrpahy (EtOAc) afforded the title compound: 1H NMR δΗ (300MHz, CDC13): 4.2-4.1 (m, 1H), 4.0- 3.7 (m, 4H), 3.65-3.4 (m, 3H), 3.4-3.3 (m, 1H), 2.2-1.85 (m, 1H), 1.85-1.7 (m, 2H), 1.6-1.5 (m, 1H).
Preparation 385: [7-(3-Ethyl-[l,2,4]oxadiazol-5-yl)-3-oxa-7-aza-bicyclo[3.3.1]non-9-yl]- methanol The title compound was synthesised from 9-hydroxymethyl-3-oxa-7-aza- bicyclo[3.3.1]nonane-7-carbonitrile (Preparation 384) and N-hydroxypropionamidine employing a procedure similar to that outlined in Preparation 51: RT = 1.77 min; mlz (ES ) = 254.1 [M+ H]+ (LCMS Method - 4).
Preparation 386: (lS,5R)-9-(2-Chloro-pyrimidin-5-yloxymethyl)-7-(3-ethyl- [l,2,4]oxadiazol-5-yl)-3-oxa-7-aza-bic clo[3.3.1]nonane
Figure imgf000201_0001
To a solution of 2-chloro-5-hydroxypyrimidine (130mg, 0.99mmol), [7-(3-ethyl- [l,2,4]oxadiazol-5-yl)-3-oxa-7-aza-bicyclo[3.3.1]non-9-yl]-methanol (Preparation 385, 250mg, 0.99mmol) and PPh3 (777mg, 2.96mmol) in THF (20mL) was added 1,1*- (azodicarbonyl)dipiperidine (0.747g, 2.96mmol) and the resulting reaction mixture was heated at 60°C for 2 h. Further PPh3 (259mg, 0.99mmol) and 1,1'-
(azodicarbonyl)dipiperidine (249mg, 0.99mmol) were added and the reaction mixture stirred at 60°C for 4 h. Further PPh3 (259mg, 0.99mmol) and 1 , l'-(azodicarbonyl)dipiperidine
(249mg, 0.99mmol) were added and the reaction mixture stirred at r.t. for 16 h. Purification by column chromotogrpahy (EtOAc:IH; 2:3) afforded the title compound: RT = 0.89 min; mlz (ES+) = 366.3 [M+ H]+ (LCMS Method - 6). Preparation 387: ((3R,45)-4-(2,5-Difluoro-phenyl)-l-{5-[(lR,55)-7-(3-ethyl-
[l,2,4]oxadiazol-5-yl)-3-oxa-7-aza-bicyclo[3.3.1]non-9-ylmethoxy]-pyrimidin-2-yl}- pyrrolidin-3-yl)-carbamic acid tert-but \ ester
Figure imgf000201_0002
To a solution of (15',5i?)-9-(2-chloro-pyrimidin-5-yloxymethyl)-7-(3-ethyl- [l,2,4]oxadiazol-5-yl)-3-oxa-7-aza-bicyclo[3.3.1]nonane (Preparation 386, 70.63mg,
0.1931mmol) and [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 60mg, 0.2mmol) in DMSO (0.8mL) was added DBU (58μΕ, 0.386mmol) and the resulting reaction mixture was heated at 85°C for 120 h. Upon cooling, the reaction mixture was diluted with DCM (lOOmL), washed with aqueous citric acid solution (1M, lOOmL) and brine (lOOmL), dried (MgS04), filtered and concentrated in vacuo. Purification by column chromotogrpahy (DCM:MeOH; 98:2), followed by further purification by preparative HPLC afforded the title compound: RT = 1.23 min; mlz (ES ) = 628.5 [M+ H]+ (LCMS Method - 6).
Preparation 388: l-Fluoro-2-((ii)-2-nitro-vinyl)-benzene
Figure imgf000202_0001
The title compound was syntheised from 2-f uorobenzaldehyde employing a procedure similar to that outlined in Preparation 30: 1H NMR δΗ (300MHz, CDC13): 8.05 (d, J=13.8 Hz, 1H), 7.73 (d, J=13.8Hz, 1H), 7.4-7.6 (m, 2H), 7.1-7.3 (m, 2H).
Preparation 389: (rrans)-l-Benzyl-3- 2-fluoro-phenyl)-4-nitro-pyrrolidine
Figure imgf000202_0002
The title compound was synthesised from l-f uoro-2-((E)-2-nitro-vinyl)-benzene (Preparation 388) employing a procedure similar to that outlined in Preparation 31: RT = 0.93 min; mlz (ES+) = 301.2 [M+ H]+ (LCMS Method - 2).
Preparation 390: [(rrans)-l-Benzyl-4-(2-fluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid terf-butyl ester
Figure imgf000202_0003
The title compound was synthesised from (trans)- l-benzyl-3-(2-fluoro-phenyl)-4- nitro-pyrrolidine (Preparation 389) employing a procedure similar to that outlined in
Preparation 32: RT = 2.99 min; mlz (ES+) = 371.3 [M+ H]+ (LCMS Method - 3). Preparation 391: [(3R,4S)-l-Benzyl-4-(2-fluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid terf-butyl ester
Figure imgf000203_0001
The title compound was afforded via chiral HPLC separation of [(trans)- 1 -benzyl-4- (2-fluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 390):
IH:IPA:BA 96:4:0.1, 15ml/min, 270nm, RT = 10.6 min.
Preparation 392: [(3R,4S)-4-(2-Fluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester
Figure imgf000203_0002
A solution of [(3 ?,45)-l-benzyl-4-(2-fluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 391, 880mg, 2.38mmol) in MeOH (47.5mL) was passed through an H-Cube apparatus (10% Pd/C Catcart 30, 30bar, 90°C) at a flow rate of ImL per min. The solvent was removed in vacuo to afford the title compound: RT = 0.63 min; m/z (ES+) = 281.3 [M+ H]+ (LCMS Method - 6).
Preparation 393: (R)-l-{l-[3-((5)-l-Methoxy-ethyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4- yl}-ethanol
Figure imgf000203_0003
The title compound was syntheseised from 4-((i?)-l-hydroxyethyl)piperidine-l- carbonitrile (Preparation 98) and (5)-N-hydroxy-2-methoxypropionamidine (Preparation 148) employing a procedure similar to that outlined in Preparation 100: RT = 0.58 min; m/z (ES+) = 256.2 [M+ H]+ (LCMS Method - 2). Preparation 394: Methanesulfonic acid (R)-l-{l-[3-((S)-l-methoxy-ethyl)- [l,2,4]oxadiazol-5-yl]-piperidin- -yl}-ethyl ester
Figure imgf000204_0001
The title compound was synthesized from (i?)-l-{l-[3-((5)-l-methoxy-ethyl)- [l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethanol (Preparation 393) employing a procedure similar to that outlined in Preparation 101: RT = 0.65 min; mlz (ES+) = 334.2 [M+ H]+ (LCMS Method - 2).
Preparation 395: 2-Chloro-5-((5)-l-{l-[3-((S)-l-methoxy-ethyl)-[l,2,4]oxadiazol-5-yl]- piperidin-4-yl}-ethoxy)-pyrimi ine
Figure imgf000204_0002
The title compound was synthesised from methanesulfonic acid (i?)-l-{l-[3-((5)-l- methoxy-ethyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl} -ethyl ester (Preparation 394) employing a procedure similar to that outlined in Preparation 373. Purification by column chromotogrpahy (DCM:MeOH; 99:1 to 96:4): RT = 2.09 min; mlz (ES+) = 368.2 [M+ H]+ (LCMS Method - 3).
Preparation 396: {(3R,45)-4-(2-Fluoro-phenyl)-l-[5-((S)-l-{l-[3-((S)-l-methoxy-ethyl)- [l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-buty\ ester
Figure imgf000204_0003
To a solution of 2-chloro-5-((S)-l-{l-[3-((S)-l-methoxy-ethyl)-[l,2,4]oxadiazol-5- yl]-piperidin-4-yl}-ethoxy)-pyrimidine (Preparation 395, 131mg, 0.357mmol) in DMSO (0.72mL) was added [(3i?,45)-4-(2-fluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 392, 150mg, 0.535mmol) and the resulting reaction mixture heated at 80°C for 88 h. Upon cooling, the reaction mixture was partitioned between DCM (150mL) and saturated aqueous citiric acid solution (150mL). The organics were separated, washed with brine (lOOmL) and concentrated in vacuo. The remainder was purified by preparative HPLC to afford the title compound: RT = 1.34 min; mlz (ES+) = 612.5 [M+ H]+ (LCMS Method - 6).
Preparation 397: 4-Fluoro-benzoic acid l-{5-[4-((5)-l-{2-[(3R,45)-3-tert- butoxycarbonylamino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}- ethyl)-piperidin- 1- l] - [ 1 ,2,4] oxadiazol-3-yl}-cyclopropyl ester
Figure imgf000205_0001
The title compound was synthesized from [(3 ?,45)-l-[5-((5)-l-piperidin-4-yl- ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185) and 4-fluoro-benzoic acid l-(5-trichloromethyl-[l,2,4]oxadiazol-3- yl)-cyclopropyl ester (Preparation 357) employing a procedure similar to that outlined in Preparation 358: RT = 1.58 min; mlz (ES+) = 768.51 [M+ H]+ (LCMS Method - 6).
Preparation 398: 4-((5)-l-{2-[(3R,4S)-3-tei-i-Butoxycarbonylamino-4-(2-fluoro-5- methyl-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidine-l-carboxylic acid benzyl ester
Figure imgf000205_0002
The title compound was synthesized from 4-[(5)-l-(2-chloro-pyrimidin-5-yloxy)- ethyl]-piperidine-l-carboxylic acid benzyl ester (Preparation 183) and [(3i?,45)-4-(2-fluoro- 5-methyl-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 285)
employing a procedure similar to that outlined in Preparation 351: RT = 1.55 min; mlz (ES+) = 634.49 [M+ H]+ (LCMS Method - 6). Preparation 399: {(3R,4S)-4-(2-Fluoro-5-methyl-phenyl)-l-[5-((S)-l-piperidin ethoxy)-pyrimidin-2-yl]-p rrolidin-3-yl}-carbamic acid tert-butyl ester
Figure imgf000206_0001
The title compound was synthesized from 4-((S)-l-{2-[(3R,4S)-3-tert- butoxycarbonylamino-4-(2-fluoro-5 -methyl-phenyl)-pyrrolidin- 1 -yl] -pyrimidin-5 -yloxy } - ethyl)-piperidine-l-carboxylic acid benzyl ester (Preparation 398) employing a procedure similar to that outlined in Preparation 185: RT = 0.87 min; m/z (ES+) = 500.46 [M+ H]+ (LCMS Method - 6).
Preparation 400: 4-Fluoro-benzoic acid l-{5-[4-((S)-l-{2-[(3R,4S)-3-teri- butoxycarbonylamino-4-(2-fluoro-5-methyl-phenyl)-pyrrolidin-l-yl]-pyrimidin-5- yloxy}-ethyl)-piperidin-l- l]-[l,2,4]oxadiazol-3-yl}-cyclopropyl ester
Figure imgf000206_0002
The title compound was synthesised from {(3i?,45)-4-(2-fluoro-5-methyl-phenyl)-l- [5-((5)-l-piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 399) and 4-fluoro-benzoic acid l-(5-trichloromethyl-[l,2,4]oxadiazol-3- yl)-cyclopropyl ester (Preparation 357) employing a procedure similar to that outlined in Preparation 358: RT = 1.61 min; m/z (ES+) = 746.58 [M+ H]+ (LCMS Method - 6).
Preparation 401: 4-((S)-l-{2-[(3R,4S)-3-tei"i-Butoxycarbonylamino-4-(2-fluoro-phenyl)- pyrrolidin-l-yl]-pyrimidin-5- loxy}-ethyl)-piperidine-l-carboxylic acid benzyl ester
Figure imgf000206_0003
The title compound was synthesized from 4-[(5)-l-(2-chloro-pyrimidin-5-yloxy)- ethyl]-piperidine-l-carboxylic acid benzyl ester (Preparation 183) and [(3i?,45)-4-(2-fluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 392) employing a procedure similar to that outlined in Preparation 351 : RT = 1.50 min; mlz (ES ) = 620
[M + H]+ (LCMS Method - 6).
Preparation 402: {(3R,45)-4-(2-Fluoro-phenyl)-l-[5-((S)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-pyrrolidin-3- l}-carbamic acid tert-butyl ester
Figure imgf000207_0001
The title compound was synthesized from 4-((S)-l- {2-[(3R,4S)-3-tert- butoxycarbonylamino-4-(2-fluoro-phenyl)-pyrrolidin- 1 -yl]-pyrimidin-5-yloxy} -ethyl)- piperidine-l-carboxylic acid benzyl ester (Preparation 401) employing a procedure similar to that outlined in Preparation 185: RT = 0.80 min; mlz (ES+) = 486.44 [M + H]+ (LCMS Method - 6).
Preparation 403: Benzoic acid l-{5-[4-((S)-l-{2-[(3R,4S)-3-tei"i-butoxycarbonylamino-4- (2-fluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]- [1,2,4] oxadiazol-3- l}-cyclobutyl ester
Figure imgf000207_0002
The title compound was synthesised from {(3i?,45)-4-(2-fluoro-phenyl)-l-[5-((5)-l- piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester
(Preparation 402) and benzoic acid l-(5-trichloromethyl-[l ,2,4]oxadiazol-3-yl)-cyclobutyl ester (Preparation 360) employing a procedure similar to that outlined in Preparation 358: RT = 1.59 min; mlz (ES+) = 728.57 [M + H]+ (LCMS Method - 6).
Preparation 404: Benzoic acid l-{5-[4-((S)-l-{2-[(3R,4S)-3-tert-butoxycarbonylamino-4- (2-fluoro-5-methyl-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]- [1,2,4] oxadiazol-3-yl}-cyclobutyl ester
Figure imgf000207_0003
The title compound was synthesised from {(3i?,45)-4-(2-fluoro-5-methyl-phenyl)-l- [5-((5)-l-piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 399) and benzoic acid l-(5-trichloromethyl-[l,2,4]oxadiazol-3-yl)- cyclobutyl ester (Preparation 360) employing a procedure similar to that outlined in
Preparation 358: RT = 1.62 min; m/z (ES+) = 742.56 [M+ H]+ (LCMS Method - 6).
Preparation 405: N-Hydroxy-l-hydroxymethyl-cyclopropanecarboxamidine
Figure imgf000208_0001
A solution of hydroxylamine (50% aqueous solution, 0.4 lmL, 6.69mmol) and 1- (hydroxymethyl)cyclopropanecarbonitrile (0.50g, 5.15mmol) in EtOH (20mL) was heated at 60°C for 4 h. Further hydroxylamine (50% aqueous solution, 0.789mL, 12.9mmol) was added and the reaction mixture stirred at 60°C for 4 h. The solvent was removed in vacuo to afford the title compound: 1H NMR δΗ (400MHz, DMSO-d6): 8.83 (s, 1H), 5.25 (br. s., 2H), 4.64 (t, 1H), 3.44 (d, J=5.5 Hz, 2H), 0.77-0.75 (m, 2H), 0.56-0.54 (m, 2H).
Preparation 406: 5-[4-((S)-l-{2-[(3R,4S)-3-tei-i-Butoxycarbonylamino-4-(2-fluoro-5- methyl-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]- [1,2,4] oxadiazole-3-carbox lic acid methyl or ethyl ester
Figure imgf000208_0002
A solution of {(3i?,4lS)-4-(2-fiuoro-5-methyl-phenyl)-l-[5-((5)-l-piperidin-4-yl- ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 399, 120mg, 0.240mmol) and 5-trichloromethyl-[l,2,4]oxadiazole-3-carboxylic acid ethyl ester (Preparation 215, 31.2mg, 0.120mmol) in DMSO (lmL) was stirred at r.t. for 96 h. The reaction mixture was loaded onto an SCX cartridge that had been pre-eluted with MeOH followed by aqueous HCl (1M) followed by MeOH. The reaction mixture was eluted with MeOH, followed by NEt3 in MeOH (2M) and the desired fractions concentrated in vacuo. Purification by column chromotogrpahy afforded a 4: 1 mixture of the title compounds: RT = 1.37, 1.42 min; m/z (ES+) = 626.5, 640.5 [M+ H]+ (LCMS Method - 6). Preparation 407: {(3R,4S)-4-(2-Fluoro-5-methyl-phenyl)-l-[5-((S)-l-{l-[3-(l-hydroxy-l- methyl-ethyl)- [ 1 ,2,4] oxadiazol-5-yl] -piperidin-4-yl}-ethoxy)-pyrimidin-2-yl] -pyrrolidin- 3-yl}-carbamic acid tert-but \ ester
Figure imgf000209_0001
The title compound was synthesized from 5-[4-((S)-l-{2-[(3R,4S)-3-tert- butoxycarbonylamino-4-(2-fluoro-5 -methyl-phenyl)-pyrrolidin- 1 -yl] -pyrimidin-5 -yloxy } - ethyl)-piperidin-l-yl]-[l,2,4]oxadiazole-3-carboxylic acid methyl or ethyl ester
(Preparation 406) employing a procedure similar to that outlined in Preparation 217: RT = 1.30 min; m/z (ES+) = 626.5 [M+ H]+ (LCMS Method - 6).
Preparation 408: (R)-l-[l-(5-Ethyl- rimidin-2-yl)-piperidin-4-yl]-ethanol
Figure imgf000209_0002
A solution of ( ?)-l-piperidin-4-yl ethanol (Preparation 61, 0.50g, 3.87mmol) and 2- bromo-5-ethylpyrimidine (0.693g, 3.70mmol) in DBU (0.6mL) was heated at 100°C under microwave irradiation for 30 min. Upon cooling, the reaction mixture was poured into water and extracted with EtOAc (3 x). The combined organic extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo. Purification (chromatography) afforded the title compound: RT = 0.72 min; m/z (ES+) = 236.28 [M+ H]+ (LCMS Method - 6).
The following compounds were prepared by reaction of ( ?)-l-piperidin-4-yl ethanol (Preparation 61) with 2-chloro-5-ethylpyrazine or 2,5-dichloropyrimidine employing a procedure similar to that outlined in Preparation 408:
Figure imgf000210_0002
Preparation 411: Methanesulfonic acid (R)-l-[l-(5-ethyl-pyrimidin-2-yl)-piperidin-4- yl] -ethyl ester
Figure imgf000210_0001
To a solution of (i?)-l-[l-(5-ethyl-pyrimidin-2-yl)-piperidin-4-yl]-ethanol
(Preparation 408, 0.484g, 2.06mmol) and triethylamine (0.40mL, 2.87mmol) in DCM (30mL) at 0°C was added methanesulfonyl chloride (0.20mL, 2.58mmol) and the resulting reaction mixture was stirred for 30 min. The reaction mixture was washed with water and saturated aqueous NaHC03 solution and concentrated in vacuo to afford the title compound: RT = 0.96 min; m/z (ES+) = 314.29 [M+ H]+ (LCMS Method - 6).
The following compounds were prepared by reaction of the appropriate alcohol building block (Preparation 409 or 410) with methanesulfonyl chloride employing a procedure similar to that outlined in Preparation 411:
Figure imgf000211_0002
Preparation 414: 2-Chloro-5-(lS)-l-[l-(5-ethylpyrimidin-2-yl)piperidin-4- yl] ethoxypyrimidine
Figure imgf000211_0001
A solution of methanesulfonic acid (i?)-l-[l-(5-ethyl-pyrimidin-2-yl)-piperidin-4-yl]- ethyl ester (Preparation 411, 1.36g, 4.34mmol), 2-chloro-5 -hydro xypyrimidine (1.13g, 8.68mmol) and potassium carbonate (1.50g, 10.8mmol) in DMF (8mL) was heated in a sealed tube at 80°C for 16 h. Upon cooling, the reaction mixture was partitioned between EtOAc and water and the organic extract separated, dried (MgS04) and concentrated in vacuo. Purification (chromatography) afforded the title compound: RT = 1.20 min; m/z (ES ) = 348.29 [M+ H]+ (LCMS Method - 6). The following compounds were prepared by reaction of the appropriate mesylate building block (Preparation 412 or 413) with 2-chloro-5-hydroxypyrimidine employing a procedure similar to that outlined in Preparation 414:
Figure imgf000212_0003
Preparation 417: (R)-l-{l-[3-(l,l-Difluoro-ethyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}- ethanol
Figure imgf000212_0001
The title compound was synthesised from 4-((i?)-l-hydroxyethyl)piperidine-l- carbonitrile (Preparation 98) and 2,2-difluoro-N-hydroxy-propionamidine (Preparation 222) employing a procedure similar to that outlined in Preparation 100: 1H NMR 5H
(300MHz, CDC13): 4.3-4.2 (m, 2H), 3.7-3.6 (m, 1H), 3.1-3.0 (m, 2H), 2.1-1.9 (m, 4H), 1.8- 1.7 (m, 1H), 1.6-1.3 (m, 3H), 1.2 (d, J=6.43 Hz, 3H).
Preparation 418: 2-Chloro-5-((5)-l-{l-[3-(l,l-difluoro-ethyl)-[l,2,4]oxadiazol-5-yl]- piperidin-4-yl}-ethoxy)-pyrimidine
Figure imgf000212_0002
To a solution of 2-chloro-5-hydroxypyrimidine (82.4mg, 0.632mmol), (i?)-l-{l-[3- (l,l-difluoro-ethyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethanol (Preparation 417,
150mg, 0.57mmol) and PPh3 (226mg, 0.861mmol) in THF (6mL) was added TBAD (198mg, 0.861mmol) and the resulting reaction mixture was stirred at r.t. for 16 h. The reaction mixture was partitioned between DCM and water and the organic extract dried (MgS04), filtered and concentrated in vacuo. Purification (chromatography) afforded the title compound: RT = 1.21 min; mlz (ES+) = 374.23 [M+ H]+ (LCMS Method - 6).
The following compounds were prepared by reaction of 4-((i?)-l- hydroxyethyl)piperidine-l-carbonitrile (Preparation 98) with the appropriate amidoxime building block employing a procedure similar to that outlined in Preparation 100:
Figure imgf000213_0001
The following compounds were prepared by reaction of the appropriate alcohol building block (Preparation 419 or 420) with methanesulfonyl chloride employing a procedure similar to that outlined in Preparation 411:
Figure imgf000214_0002
Preparation 421: 2-Chloro-5-{(5)-l-[l-(3-trifluoromethyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-yl]-ethoxy}-pyrimidine
Figure imgf000214_0001
To a solution of methanesulfonic acid (i?)-l-[l-(3-trifluoromethyl-[l,2,4]oxadiazol-5- yl)-piperidin-4-yl] -ethyl ester (Preparation 419, 1.34g, 3.90mmol) and 2-chloro-5- hydroxypyrimidine (1.13g, 8.68mmol) in DMA (27mL) was added cesium fluoride (1.19g, 7.81mmol) and the resulting reaction mixture was stirred at 70°C for 72 h. Upon cooling, the reaction mixture was diluted with water and saturated aqueous NaHC03 solution and extracted with EtOAc (2 x). The combined organic extracts were washed with brine (8 x), dried (MgS04), filtered and concentrated in vacuo. Purification by column chromatography (EtOAc: Heptane; 1 : 1) followed by further purification by column chromatography
(DCM:MeOH:NH ) afforded the title compound: RT = 2.68 min; m/z (ES+) = 378.4 [M + H]+ (LCMS Method - 3). Preparation 422 : 5-{(S)-l-[l-(3-terf-Butyl- [ 1 ,2,4] oxadiazol-5-yl)-piperidin-4-yl] -ethoxy}- 2-chloro-pyrimidine
Figure imgf000215_0001
The title compound was synthesised from methanesulfonic acid (R)-l-[l-(3-tert- butyl-[l ,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethyl ester (Preparation 420) and 2-chloro-5- hydroxypyrimidine employing a procedure similar to that outlined in Preparation 421: RT = 2.65 min; mlz (ES+) = 366.4 [M+ H]+ (LCMS Method - 3).
Preparation 423: [(3R,45)-l-[5-((S)-l-{l-[(S)-2-(Tetrahydro-furan-3-yl)-2H-tetrazol-5- yl] -piperidin-4-yl}-ethoxy)-pyrimidin-2-yl] -4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl] - carbamic acid tert-buty\ est r
Figure imgf000215_0002
A solution of [(3i?,45)-l-(5-{(5)-l-[l-(2H-tetrazol-5-yl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 231, 0.250g, 0.424mmol), 3-iodotetrahydrofuran (0.252g, 1.27mmol) and triethylamine (lmL, 7mmol) in DMF (lmL) was heated at 80°C for 28 h. Upon cooling, EtOAc (50mL) was added, the solution washed with water (30mL) and brine (2 x 30mL), passed through a hydrophobic frit and concentrated in vacuo. The remainder was purified by preparative HPLC to afford [(3i?,45)-l-[5-((5)-l-{l-[2-(tetrahydro-furan-3-yl)-2H-tetrazol-5- yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-butyl ester. Purification by chiral HPLC ((MeOH:MeCN:THF 45:40: 15, 15ml/min, 250nm) afforded the title compound: RT = 1.39 min; mlz (ES+) = 660.50 [M + H]+ (LCMS Method - 6). Preparation 424: [(3R,4S)-l-[5-((S)-l-{l-[(R)-2-(Tetrahydro-furan-3-yl)-2H-tetrazol-5- yl] -piperidin-4-yl}-ethoxy)-pyrimidin-2-yl] -4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl] - carbamic acid tert-butyl ter
Figure imgf000216_0001
The title compound was synthesized from [(3i?,45)-l-(5-{(5)-l-[l-(2H-tetrazol-5-yl)- piperidin-4-yl]-ethoxy} -pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 231) employing the procedure outlined in Preparation 423: RT = 1.39 min; m/z (ES+) = 660.50 [M+ H]+ (LCMS Method - 6). Example 1: (3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy] rimidin-2-yl}pyrrolidin-3-ylamine hydrochloride
Figure imgf000216_0002
To a solution of 2-choro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidine (Preparation 2, 67mg, 0.20mmol) and [(3i?,45)-4-(2,5- difluorophenyl)pyrrolidin-3-yl] carbamic acid tert-butyl ester (Preparation 48, 60mg, 0.20mmol) in DMSO (0.4mL), under argon, was added DBU (30μΙ., 0.20mmol) and the mixture was heated to 100°C for 16 h. A further portion of 2-choro-5-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-ylmethoxy]pyrimidine (Preparation 2, 20mg, 0.06mmol) was added and heating continued for 8 h. The mixture was cooled to r.t. and partitioned between DCM and brine. The organic phase was separated, dried (Na2S04) and the solvent removed in vacuo. To a solution of the residue in DCM (8mL) was added TFA (2mL) and the mixture was stirred at r.t. for 1 h. The crude reaction mixture was purified by SCX cartridge, eluting with MeOH followed by NH4OH in MeOH, and the basic fraction collected. Further purification by column chromatography (DCM:MeOH, 98:2) afforded the title compound as the free base, which was dissolved in a solution of 4M HC1 in dioxane.
The solvent was removed in vacuo to afford the title compound: RT = 2.82 min; m/z (ES ) = 500.2 [M+ H]+. Example 2: (3R,4R)-4-(2,5-Difluorophenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy] rimidin-2-yl}piperidin-3-ylamine hydrochloride
Figure imgf000217_0001
The title compound was prepared from 2-choro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy]pyrimidine (Preparation 2) and [(3i?,4i?)-4-(2,5- difluorophenyl)piperidin-3-yl]carbamic acid tert-butyl ester (Preparation 9) employing the procedure outlined in Example 1: RT = 2.88 min; m/z (ES+) = 514.3 [M+ H]+.
Example 3: (3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy] ridin-2-yl}pyrrolidin-3-ylamine hydrochloride
Figure imgf000217_0002
A combination of 2-bromo-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyridine (Preparation 3, 38mg, O.lOmmol), [(3R,4S)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 36mg, 0.12mmol), sodium tert-butoxide (34mg, 0.35mmol) and 2,8,9-triisobutyl-2,5,8,9-tetraaza-l- phosphabicyclo[3.3.3]undecane (3mg, O.Olmmol) in toluene (3mL) was degassed with argon for 10 min. tra(dibenzylideneacetone)dipalladium (9mg, O.Olmmol) was added and the mixture was degassed with argon for a further 10 min before heating in a microwave reactor at 120°C for 30 min. The reaction mixture was partitioned between DCM (lOOmL) and brine (lOOmL), then the organic phase was separated, dried (MgS04) and the solvent removed in vacuo to afford the tert-butyl carbamate protected intermediate product.
The crude product was dissolved in DCM (5mL), and TFA (5mL) was added before stirring the mixture at r.t. for 20 min. Removal of the reaction solvent in vacuo and purification by column chromatography (DCM:MeOH, 96:4) afforded the title compound as the free amine. The product was dissolved in a solution of HC1 in dioxane (4M), then removal of the solvent in vacuo afforded the title compound: RT = 2.52 min; m/z (ES ) = 499.3 [Μ+ ηγ. Example 4: (3R,4R)-4-(2,5-Difluorophenyl)-5'-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy] -3,4,5,6-tetr ahydro-2H- [ 1 ,2 ' ] bipyridinyl-3-ylamine hydrochloride
Figure imgf000218_0001
The title compound was prepared from 2-bromo-5-[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)piperidin-4-ylmethoxy]pyridine (Preparation 3) and [(3i?,4i?)-4-(2,5- difluorophenyl)piperidin-3-yl]carbamic acid tert-butyl ester (Preparation 9) employing a similar method to that outlined in Example 3, but the tert-butyl protected amine intermediate was purified by column chromatography (IH:EtOAc, 60:40). To a solution of the product in DCM (5mL) was added TFA (5mL) and the reaction was stirred at r.t. for 20 min. The crude reaction mixture was passed directly down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected. The residue was dissolved in a solution of HC1 in dioxane (4M), then removal of the solvent in vacuo afforded the title compound: RT = 2.63 min; m/z (ES+) = 513.3 [M+ H]+.
Example s: (3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy] razin-2-yl}pyrrolidin-3-ylamine hydrochloride
Figure imgf000218_0002
A combination of 2-bromo-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrazine (Preparation 4, 115mg, 0.30mmol), [(3R,4S)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 107mg, 0.36mmol), sodium tert-butoxide (lOlmg, 1.05mmol) and 2,8,9-triisobutyl-2,5,8,9-tetraaza- l-phosphabicyclo[3.3.3]undecane (lOmg, 0.03mmol) in dioxane (4mL) was degassed with argon for 10 min. tra(dibenzylideneacetone)dipalladium (9mg, O.Olmmol) was added and the mixture was degassed with argon for a further 5 min before being heated in a microwave reactor at 120°C for 30 min. The reaction mixture was passed directly down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected.
Further purification by preparative HPLC afforded the title compound as the free amine. The product was dissolved in a solution of HC1 in dioxane (4M), then removal of the solvent in vacuo afforded the title compound: RT = 2.80 min; mlz (ES+) = 500.2 [M+ H] .
Example 6: (3R,4S)-l-{5-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrazin-2-yl}-4- -trifluorophenyl)pyrrolidin-3-ylamine hydrochloride
Figure imgf000219_0001
2-Bromo-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-ylmethoxy]pyrazine (Preparation 4) was reacted with [(3i?,45)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39) employing a procedure similar to that outlined in
Example 5, but the reaction mixture was heated for a further 30 min at 120°C. After SCX purification the residue was dissolved in DCM (5mL), and TFA (5mL) was added. After stirring at r.t. for 15 min the reaction mixture was passed directly down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected. Further purification by column chromatography (DCM:MeOH, 97.5:2.5) afforded the title compound as the free amine. The product was dissolved in a solution of HC1 in dioxane (4M), then removal of the solvent in vacuo afforded the title compound: RT = 2.83 min; mlz (ES ) = 518.4 [M+ H]+.
Example 7: 4-{6-[(3S,4S)-3-Amino-4-(2-oxopiperidin-l-yl)pyrrolidin-l-yl]pyridin-3- yloxymethyl}piperidine-l-carbox lic acid isopropyl ester hydrochloride
Figure imgf000219_0002
A combination of 4-(6-bromopyridin-3-yloxymethyl)piperidine-l-carboxylic acid isopropyl ester (Preparation 15, 107mg, 0.30mmol), [(35',45)-4-(2-oxopiperidin-l- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 20, 109mg, 0.35mmol), 9,9- dimethyl-4,5-bis(diphenylphosphino)xanthene (lOmg, 0.02mmol) and sodium tert-butoxide (lOlmg, 1.05mmol), in toluene (4mL), was bubbled with argon for 15 min. tris- (dibenzylideneacetone)dipalladium (6mg, O.Olmmol) was added and the resulting mixture was heated to 100°C for 24 h. The crude mixture was filtered and diluted with EtOAc. The organic mixture was washed with sat. NaHCCb solution, dried (MgS04) and the solvent removed in vacuo. Purification by column chromatography (DCM:MeOH, 90: 10) afforded the title compound as the free amine. The product was re-dissolved in a solution of HCl in dioxane (4M), then the solvent was removed in vacuo to afford the title compound: RT = 2.23 min; mlz (ES+) = 460.2 [M+ H]+.
Example 8 : 4- {6- [(3R, S)-3- Amino-4-(2,5-difluorophenyl)pyrrolidin- 1-yl] pyridin-3- yloxymethyl}piperidine-l-carbox lic acid isopropyl ester hydrochloride
Figure imgf000220_0001
4-(6-Bromopyridin-3-yloxymethyl)piperidine-l-carboxylic acid isopropyl ester
(Preparation 15) was reacted with [(3 ?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48) employing a procedure similar to that outlined in
Example 7. The crude reaction mixture was partitioned between DCM and brine, then the organic phase was separated, dried (MgS04) and the solvent removed in vacuo. Purification by column chromatography (DCM:MeOH, 98:2, 96:4, 92:8,90: 10) afforded the title compound as the free amine. The product was re-dissolved in a solution of HCl in dioxane
(4M) and the solvent was removed in vacuo to afford the title compound: RT = 2.57 min; mlz
Figure imgf000220_0002
Example 9: 4-[(3R,4R)-3-Amino-4-(2,5-difluorophenyl)-3,4,5,6-tetrahydro-2H- [l,2']bipyridinyl-5'-yloxymethyl]piperidine-l-carboxylic acid isopropyl ester hydrochloride
4-(6-Bromopyridin-3-yloxymethyl)piperidine-l-carboxylic acid isopropyl ester
(Preparation 15) was reacted with [(3i?,4i?)-4-(2,5-difluorophenyl)piperidin-3-yl]carbamic acid tert-butyl ester (Preparation 9) employing a procedure similar to that outlined in
Example 7, but the reaction was heated to 90°C. The crude mixture was concentrated in vacuo, re-dissolved in MeOH, and filtered. The filtrate was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected. The material was further purified by preparative HPLC, and the resulting product was passed down a second SCX cartridge, eluting with MeOH then NH4OH in MeOH. The basic fraction was collected and concentrated in vacuo. The product was dissolved in a solution of HC1 in dioxane (4M) and the solvent was removed in vacuo to afford the title compound: RT = 2.75 min; mlz (ES+) = 489.2 [M+ H]+.
Example 10: 4- {4- [(3R,4R)-3-Amino-4-(2,5-difluorophenyl)piperidin- 1- yl]phenoxymethyl}piperidine-l-carbox lic acid isopropyl ester hydrochloride
Figure imgf000221_0001
A combination of 4-(4-bromophenoxymethyl)piperidine-l-carboxylic acid isopropyl ester (Preparation 22, 96mg, 0.3mmol), [(3i?,4i?)-4-(2,5-difluorophenyl)piperidin-3- yljcarbamic acid tert-butyl ester (Preparation 9, 31mg, O.lmmol), triethylamine (41 μΙ^, 0.3mmol), copper acetate monohydrate (20mg, O.lmmol) and 4A molecular sieves in DCM (6mL) was stirred at r.t. for 80 h. The reaction mixture was filtered, and filtrate concentrated in vacuo. The residue was re-dissolved in MeOH and passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected. To the product in DCM (lOmL) was added TFA (2mL) and the reaction was stirred at r.t. for 1 h. The material was passed down a second SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected. Further purification by preparative HPLC afforded the title compound as the free amine. The product was dissolved in a solution of HC1 in dioxane (4M), then the solvent was removed in vacuo to afford the title compound: RT = 3.10 min; mlz (ES+) = 488.3 [M+ H]+.
Example 11: 4-{2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l-yl]pyrimidin-5- yloxymethyl}piperidine-l-carbox lic acid isopropyl ester hydrochloride
Figure imgf000221_0002
To a solution of 4-(2-chloropyrimidin-5-yloxymethyl)piperidine-l-carboxylic acid isopropyl ester (Preparation 25, 47mg, 0.15mmol) and [(3R,4S)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 45mg, 0.15mmol) in DMSO (0.3mL) under argon was added DBU (23 uL, 0.15mmol) and the mixture was heated to 100°C for 16 h. After cooling to r.t. the mixture was partitioned between DCM (lOOmL) and brine (lOOmL), then the organic phase was separated and concentrated in vacuo. The residue was re-dissolved in DCM (lOmL), and TFA (3mL) was added before stirring at r.t. for 1 h. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected. Further purification by column chromatography (DCM:MeOH, 98:2) afforded the title compound as the free amine. The product was dissolved in a solution of HC1 in dioxane (4M) and the solvent was removed in vacuo to afford the title compound: RT = 2.88 min; mlz (ES+) = 476.3 [M+ H]+.
Example 12: 4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyrimidin-5-yloxy}ethyl) iperidine-l-carboxylic acid isopropyl ester hydrochloride
Figure imgf000222_0001
To a solution of 4-[l-(2-chloropyrimidin-5-yloxy)ethyl]piperidine-l-carboxylic acid isopropyl ester (Preparation 27, 113mg, 0.31mmol) and [(3R,4S)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 112mg, 0.38mmol) in DMSO (0.63mL), under argon, was added DBU (47μΙ., 0.20mmol) and the reaction was heated to 100°C for 72 h. The mixture was cooled to r.t. and partitioned between EtOAc and brine. The organic phase was separated, dried (MgS04) and
concentrated in vacuo. Purification by column chromatography (IH:EtOAc, 60:40) followed by chiral HPLC (MTBE:THF 90: 10, 13ml/min, 235nm, RT = 19.4 min) afforded the intermediate product 4-(l - {2-[(3i?,45)-3-fert-butoxycarbonylamino-4-(2,5- difluorophenyl)pyrrolidin- 1 -yl]pyrimidin-5 -yloxy } ethyl)piperidine- 1 -carboxylic acid isopropyl ester: RT = 4.55 min; mlz (ES+) = 590.3 [M+ H]+.
To a solution of the product in DCM (5mL) was added TFA (lmL) and the reaction was stirred at r.t. until complete. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected. Removal of the solvent in vacuo afforded the title compound as the free amine, which was re-dissolved in Et20 (3mL). A solution of HC1 in dioxane (4M) was added and the solvent was removed in vacuo to afford the title compound: RT = 2.75 min; mlz (ES+) = 490.2 [M + H]+. Example 13: (3R,4S)-4-(2,4-difluorophenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy] rimidin-2-yl}pyrrolidin-3-ylamine hydrochloride
Figure imgf000223_0001
To a solution of 2-choro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidine (Preparation 2, 54mg, 0.15mmol) and [(3 ?,45)-4-(2,4- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 34, 54mg, 0.18mmol) in DMSO (0.63mL), under argon, was added DBU (47μΙ, 0.20mmol) and the reaction was heated to 100°C for 16 h. The mixture was cooled to r.t. and partitioned between EtOAc and brine. The organic phase was separated, washed with brine (3 x 150mL), dried (MgS04) and concentrated in vacuo. Purification by column chromatography (IH:EtOAc, 60:40) afforded the intermediate product ((3i?,45)-4-(2,4-difiuorophenyl)-l-{5- [l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3- yl)carbamic acid tert-butyl ester: RT = 4.47 min; m/z (ES+) = 600.3 [M+ H]+
To a solution of the product in DCM (5mL) was added TFA (lmL) and the reaction was stirred at r.t. until complete. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected. Removal of the solvent in vacuo afforded the title compound as the free amine, which was re-dissolved in Et20 (3mL). A solution of HC1 in dioxane (4M) was added and the solvent was removed in vacuo to afford the title compound: RT = 2.77 min; m/z (ES+) = 500.2 [M+ H] .
The following Examples were prepared by reacting the appropriate 2-choropyrimidine building block with the appropriate amine building block employing a similar procedure to that outlined in Example 13:
Figure imgf000224_0001
Example 18: (3R,4S)-l-{5-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidin-2-yl}-4- 2,4,5-trifluorophenyl)pyrrolidin-3-ylamine
Figure imgf000225_0001
To a solution of 2-choro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidine (Preparation 2, 199mg, 0.56mmol) and [(3R,4S)-4-(2,4,5- trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 269mg, 0.85mmol) in DMSO (4mL), under argon, was added DBU (130μΙ_,, 0.89mmol) and the reaction was heated to 85°C for 144 h. The mixture was cooled to r.t. and diluted with EtOAc. The organic solution was washed with water, then brine, and dried (MgS04), before removal of the solvent in vacuo. Purification by column chromatography (IH:EtOAc, 1 : 1.5) afforded the intermediate product [(3i?,4S)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy]pyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester: RT = 4.53 min; m/z (ES+) = 618.2 [M+ H]+
To a solution of the product in DCM (lOmL) was added TFA (2.5mL) and the reaction was stirred at r.t. until complete. The reaction solvent was concentrated in vacuo and the resulting residue was partitioned between EtOAc and 1M NaOH solution. The organic phase was separated and the aqueous phase extracted with EtOAc (x 3). All organic fractions were combined, washed with brine, dried (MgS04), and the solvent removed in vacuo.
Purification by column chromatography (DCM:MeOH, 20: 1), followed by crystallisation from EtOAc, afforded the title compound: RT = 2.77 min; m/z (ES+) = 500.2 [M+ H]+.
Example 19: ((3R,45)-4-(4-Chloro-2-fluorophenyl)-l-{5-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperi in-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-ylamine
Figure imgf000225_0002
To a solution of 2-choro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidine (Preparation 2, 130mg, 0.37mmol) and [(tra/?s)-4-(4-chloro-2- fluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 45, HOmg, 0.0.35mmol) in DMSO (2mL), under argon, was added DBU (55μί, 0.37mmol) and the reaction was heated to 85°C for 120 h. The mixture was cooled to r.t. and diluted with EtOAc. The organic solution was washed with water, then brine, and dried (MgSC^), before removal of the solvent in vacuo. Purification by column chromatography (IH:EtOAc, 1 : 1.5) and further purification by chiral HPLC (MTBE:THF 80:20, 12ml/min, 235nm, RT = 14.2 min) afforded the intermediate product ((3i?,45)-4-(4-chloro-2-fluorophenyl)-l- {5-[l-(3- isopropyl-[l ,2,4]oxadiazol-5-yl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3- yl)carbamic acid tert-butyl ester: RT = 4.64 min; mlz (ES ) = 616.3 [M + H]+
To a solution of the product in DCM (4mL) was added TFA (lmL) and the reaction was stirred at r.t. until complete. The solvent was concentrated in vacuo, and resulting residue partitioned between EtOAc and 1M NaOH solution. The organic phase was separated, washed with brine, dried (MgSC^), and the solvent removed in vacuo. Purification by column chromatography (DCM:MeOH, 40:3) afforded the title compound: RT = 2.93 min; mlz (ES+) = 516.2 [M + H]+.
Example 20: ((3S,4R)-4-(4-Chloro-2-fluorophenyl)-l-{5-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-ylamine
Figure imgf000226_0001
The title compound was prepared from 2-choro-5-[l-(3-isopropyl-[l ,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy]pyrimidine (Preparation 2) and [(tra/?s)-4-(4-chloro-2- fluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 45) employing the procedure outlined in Example 19. Chiral HPLC: MTBE:THF 80:20, 12ml/min, 235nm, RT 9.1 min. LCMS : RT = 2.85 min; mlz (ES+) = 516.2 [M + H]+.
Example 21: 4-((R)-l-{6-[(3R,45)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyridine-3-yloxy}ethyl)pi eridine-l-carboxylic acid isopropyl ester hydrochloride
Figure imgf000226_0002
The title compound was prepared by reacting 4-[l-(6-bromopyridin-3- yloxy)ethyl]piperidine-l-carboxylic acid isopropyl ester (Preparation 54) with [(3R,4S)-4- (2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48)
employing a similar method to that outlined in Example 3. At the end of the first step the reaction mixture was passed directly down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected. To a solution of the residue in DCM (5mL) was added TFA (5mL) and the reaction was stirred at r.t. for 30 min. The crude reaction mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected. Further purification by column chromatography (DCM:MeOH, 97.5:2.5) followed by chiral HPLC (MTBE:MeOH:BA 80:20:0.1, 13ml/min, 250nm, RT: 10.5 min) afforded the title compound as the free amine. The product was dissolved in Et20, and a few drops of a solution of HC1 in dioxane (4M) was added.
Removal of the solvent in vacuo afforded the title compound: RT = 2.54 min; mlz (ES ) =
Figure imgf000227_0001
Example 22: 4-((5)-l-{6-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyridin-3-yloxy}ethyl)piperidine-l-carbox lic acid isopropyl ester hydrochloride
Figure imgf000227_0002
The title compound was prepared employing the procedure outlined in Example 21: chiral HPLC: MTBE:MeOH:BA 80:20:0.1, 13ml/min, 250nm, RT: 14.4 min. LCMS: RT = 2.54 min; mlz (ES+) = 489.2 [M+ H]+.
Example 23: (3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy] -4-methylpyrimidin-2-yl}pyrrolidin-3-ylamine p- toluenesulfonic acid salt
Figure imgf000227_0003
To a solution of 2-chloro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]-4-methylpyrimidine (Preparation 57, 89mg, 0.25mmol) and [(3i?,45)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid fert-butyl ester (Preparation 48, 150mg, 0.50mmol) in DMSO (4mL) was added DBU (39μί, 0.25mmol) and the reaction was heated to 80°C in a sealed tube for 7 days. The mixture was diluted with EtOAc, washed with brine, dried (Na2S04) and the solvent removed in vacuo to afford the intermediate product
((3i?,45)-4-(2,5-difluorophenyl)- 1 - {5-[l -(3 -isopropyl- [ 1 ,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]-4-methylpyrimidin-2-yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester: RT = 4.51 min; m/z (ES+) = 614.5 [M+ H]+.
To a solution of the product in DCM (5mL), cooled to 0°C, was added TFA (2mL) over 5 min, and the resulting mixture was stirred at this temperature for 2 h. Sat. NaHC03 solution was added to quench the reaction and the organic phase was separated, passed through a phase separator, and concentrated in vacuo. Purification by column
chromatography, followed by chiral HPLC, afforded the title compound as the free amine. To a solution of the product in MeOH was added a solution of TsOH (leq.) in MeOH, then removal of the solvent in vacuo afforded the title compound: RT = 2.87 min; m/z (ES ) =
Figure imgf000228_0001
Example 24: (3R,4S)-l-{5-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-ylmethoxy]- 4-methylpyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-ylamine p- toluenesulfonic acid alt
Figure imgf000228_0002
To a solution of 2-chloro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]-4-methylpyrimidine (Preparation 57, 83mg, 0.24mmol) and [(3i?,45)-4-(2,4,5- trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 150mg, 0.47mmol) in DMSO (4mL) was added DBU (36μΕ, 0.24mmol) and the reaction was heated to 80°C in a sealed tube for 7 days. The mixture was diluted with EtOAc, washed with brine, dried (MgS04) and the solvent removed in vacuo. Purification by preparative HPLC afforded the intermediate product [(3i?,45)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]-4-methylpyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester: RT = 4.53 min; mlz (ES+) = 632.26 [M+ H]+.
To a solution of the product in Et20 (5mL), under argon, was added HC1 in dioxane
(4M, 5mL), and the resulting mixture was stirred at r.t. for 16 h. The reaction solvent was concentrated in vacuo, then sat. NaHC03 solution and MeOH (2mL) were added. The mixture was extracted with DCM and the organic phase was dried (Na2S04). Removal of the solvent in vacuo and purification by column chromatography (DCM:MeOH, 100:0, 98:2, 97:3, 90: 10) afforded the title compound as the free amine. To a solution of the product in MeOH was added a solution of TsOH (leq.) in MeOH, then removal of the solvent in vacuo afforded the title compound: RT = 2.95 min; mlz (ES+) = 532.2 [M+ H]+.
Example 25: (3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(5-isopropyl-[l,2,4]oxadiazol-3- yl)piperidin-4-ylmethoxy] rimidin-2-yl}pyrr olidin-3-ylamine hydrochloride
Figure imgf000229_0001
To a solution of 2-chloro-5-[l-(5-isopropyl-[l,2,4]oxadiazol-3-yl)piperidin-4- ylmethoxy]pyrimidine (Preparation 60, 249mg, 0.70mmol) and [(3i?,45)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 209mg, OJOmmol) in DMSO (1.4mL), under argon, was added DBU (104μΙ., 0.70mmol) and the reaction was heated to 100°C for 16 h. The mixture was cooled to r.t. and partitioned between EtOAc and brine. The organic phase was separated, dried (MgS04) and the solvent removed in vacuo. Purification by column chromatography (IH:EtOAc, 70:30) afforded the intermediate product ((3i?,45)-4-(2,5-difluorophenyl)-l-{5-[l-(5-isopropyl-[l,2,4]oxadiazol- 3-yl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester: RT = 4.69 min; mlz (ES+) = 600.2 [M+ H]+
To a solution of the product in DCM (8mL) was added TFA (2mL) and the reaction was stirred at r.t. for 1 h. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected and concentrated in vacuo. Purification was repeated by passing the residue down an SCX(POH) cartridge. The basic fraction was collected and concentrated in vacuo to afford the title compound as the free amine. The product was re-dissolved in a small volume of Et20 and a solution of HC1 in dioxane (4M) was added. Removal of the solvent in vacuo afforded the title compound: RT = 2.79 min; mlz (ES+) = 500.2 [M+ H]+.
Example 26: (3R,4S)-l-{5-[l-(5-Chloropyrimidin-2-yl)piperidin-4- ylmethoxy]pyrimidin-2-yl}-4-(2,5-difluorophenyl)pyrrolidin-3-ylamine
Figure imgf000229_0002
A combination of (3i?,45)-4-(2,5-difluorophenyl)-l-[5-(piperidin-4- ylmethoxy)pyrimidin-2-yl]pyrrolidin-3-ylamine (Preparation 64, 21 mg, 0.05 mmol), 2,5- dichloropyrimidine (8 mg, 0.05 mmol) and triethylamine (30 μί, 0.2 mmol) in tert-butanol (1 mL) was heated in a microwave reactor at 110°C for 50 min. The mixture was cooled to r.t. and passed directly down an SCX(POH) cartridge, eluting with MeOH then 10% NH4OH in MeOH. The basic fraction was collected and concentrated in vacuo to afford the title compound: RT = 2.93 min; mlz (ES+) = 502.2 [M+ H]+.
Example 27: 4-(5-{2-[(3R,4S)-3-Amino-4-(2-fluorophenyl)pyrrolidin-l-yl]pyrimidin-5- yloxymethyl}-[l,2,4]oxadiazol-3-yl)piperidine-l-carboxylic acid isopropyl ester p- toluenesulfonic acid salt
Figure imgf000230_0001
A combination of 4-[5-(2-chloropyrimidin-5-yloxymethyl)-[l,2,4]oxadiazol-3- yl]piperidine-l-carboxylic acid isopropyl ester (Preparation 68, 125mg, 0.33mmol),
[(tra/75)-4-(2-fluorophenyl)pyrrolidin-3-yl]carbamic acid-9H-fluoren-9-ylmethyl ester hydrochloride (Preparation 71, 143mg, 0.33mmol) and DIPEA (120μΕ, 0.69mmol), in tert- butanol (2mL), was heated to 80°C for 72 h. The reaction mixture was concentrated in vacuo and purified by column chromatography (DCM:MeOH, 94:6). Further purification by chiral HPLC (MTBE:MeOH:BA 80:20:0.1, 12ml/min, 250nm, RT = 24.9 min) afforded the title compound as the free amine. A solution of TsOH (leq.) in MeOH (2mL) was added to the product, then removal of the solvent in vacuo afforded the title compound: RT = 2.79 min; mlz (ES+) = 526.3 [M+ H]
Example 28 : 4-(5- {2- [(3R,4R)-3- Amino-4-(2,5-difluorophenyl)piperidin- 1-yl] pyrimidin- 5-yloxymethyl}-[l,2,4]oxadiazol-3-yl)piperidine-l-carboxylic acid isopropyl ester hydrochloride
Figure imgf000230_0002
To a solution of 4-(5-{2-[(3i?,4i?)-3-tert-butoxycarbonylamino-4-(2,5- difluorophenyl)piperidin- 1 -yl]pyrimidin-5-yloxymethyl} -[ 1 ,2,4]oxadiazol-3-yl)piperidine- 1 - carboxylic acid isopropyl ester (Preparation 69, 30mg, 0.05mmol) in DCM (8mL) was added TFA (2mL) and the reaction was stirred at r.t. for 1 h. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH. The basic fraction was collected and concentrated in vacuo to afford the title compound as the free amine. The product was re-dissolved in Et20, then a solution of HC1 in dioxane (4M) was added. The solvent was removed in vacuo to afford the title compound: RT = 2.87 min; mlz (ES+) = 558.2 [ + H]+.
Example 29: {2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l-yl]pyrimidin-5- ylmethyl}- [1 -(3-isopr opyl- [ 1 ,2,4] oxadiazol-5- l)piperidin-4-yl] methylamine
Figure imgf000231_0001
To a solution of {(3i?,45)-4-(2,5-difluorophenyl)-l-[5-({[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yl]methylamino}methyl)pyrimidin-2-yl]pyrrolidin-3- yl}carbamic acid tert-butyl ester (Preparation 78, 49.3mg, 0.08mmol) in DCM (l .OmL) was added TFA (0.2mL) and the reaction was mixed at r.t. for 2h .
The reaction mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected. Removal of the solvent in vacuo afforded the title compound: RT = 2.27 min; mlz (ES+) = 513.2 [M+ H]+.
Example 30: {2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l-yl]pyrimidin-5- yl}-[l-(3-isopropyl-[l,2,4]oxadiazol-5- l)piperidin-4-ylmethyl]amine
Figure imgf000231_0002
The title compound was prepared from [(3i?,45)-4-(2,5-difluorophenyl)-l-(5-{[l-(3- isopropyl- [ 1 ,2,4]oxadiazol-5 -yl)piperidin-4-ylmethyl] amino } pyrimidin-2-yl)pyrrolidin-3 - yljcarbamic acid tert-butyl ester (Preparation 82) employing the procedure outlined in
Example 29: RT = 2.62 min; mlz (ES+) = 499.3 [M+ H]+. Example 31: (3R,4S)-4-(2,5-Difluorophenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yloxymethyl] rimidin-2-yl}pyrrolidin-3-ylamine
Figure imgf000232_0001
To a solution of ((3i?,45)-4-(2,5-difluorophenyl)-l-{5-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yloxymethyl]pyrimidin-2-yl}pyrrolidin-3-yl)car^ acid tert-butyl ester (Preparation 85, 11.7mg, 0.02mmol) in DCM (250μί) was added TFA (50μί), and the mixture was stirred at r.t. for 80 min. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected and concentrated in vacuo. Further purification by column chromatography (EtOAc:MeOH, 100:0, 0: 100) afforded the title compound: RT = 2.57 min; mlz (ES+) = 500.3 [M+ H]+.
Example 32: (3R,4S)-l-{5-[l-(5-Chloropyrimidin-2-yl)-4-methoxypiperidin-4- ylmethoxy]pyrimidin-2-yl}-4-(2,4,5-trifluoro henyl)pyrrolidin-3-ylamine
Figure imgf000232_0002
To a solution of [(3i?,45)-l-{5-[l-(5-chloropyrimidin-2-yl)-4-methoxypiperidin-4- ylmethoxy]pyrimidin-2-yl} -4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 90, 4.9mg, O.Olmmol) in DCM (lmL) was added TFA (O.lmL) and the reaction was shaken at r.t. for 16 h. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected and concentrated in vacuo to afford the title compound: RT = 2.98 min; mlz (ES+) = 550.5 [M+ H] .
Example 33: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl]ethoxy}pyrimidin-2-yl)pyrrolidin-3-yl]-5,5-difluoropiperidin-2-one hydrochloride
Figure imgf000232_0003
To a solution of 2-chloro-5-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyrimidine (Preparation 63, 171mg, 0.49mmol) and [(3S,4S)-4-(5,5-Difluoro-2- oxopiperidin-l-yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 93, 155mg, 0.49mmol) in DMSO (l .OmL), under argon, was added DBU (Ί4μΙ, 0.49mmol) and the reaction was heated to 80°C for 112 h. The reaction mixture was diluted with DCM (50mL), washed with brine (3 x 50mL), dried using a phase separator, and the solvent removed in vacuo. Purification by column chromatography (DCM:MeOH, 97.5: 1.5) afforded the intermediate product [(35,,45)-4-(5,5-difluoro-2-oxopiperidin-l -yl)- 1 -(5- {(S)- 1 -[ 1 -(3- isopropyl- [ 1 ,2,4]oxadiazol-5 -yl)piperidin-4-yl] ethoxy } pyrimidin-2-yl)pyrrolidin-3 - yljcarbamic acid tert-butyl ester.
To a solution of the intermediate in DCM (5mL) was added TFA (lmL) and the reaction was stirred at r.t. for 30min. A further portion of TFA was added (lmL) and the reaction was stirred for a further 20min. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. Further purification by column chromatography (DCM:MeOH, 95:5, 90: 10) afforded the title compound as the free amine. The product was re-dissolved in Et20 (2mL) and a solution of HC1 in dioxane (4M, 5 drops) was added. Removal of the solvent in vacuo afforded the title compound: RT = 2.67 min; m/z (ES+) = 535.5 [M+ H] .
Example 34: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl] ethoxy pyrimidin-2-yl)pyrrolidin-3-yl] piperidin-2-one hydrochloride
Figure imgf000233_0001
To a solution of 2-chloro-5-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyrimidine (Preparation 63, 171mg, 0.49mmol) and [(35',45)-4-(2-oxopiperidin- l-yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 20, 160mg, 0.56mmol) in DMSO (l .OmL), under argon, was added DBU (81 uL, 0.54mmol) and the reaction was heated to 80°C for 144 h. The reaction mixture was diluted with DCM (50mL), washed with brine (x 3), dried using a phase separator, and the solvent removed in vacuo. Purification by column chromatography (DCM:MeOH, 98:2) afforded the intermediate product (3S,4S)-l- (5- {(S)- 1 -[ 1 -(3-isopropyl-[l ,2,4]oxadiazol-5-yl)piperidin-4-yl]ethoxy}pyrimidin-2-yl)-4-(2- oxopiperidin-l-yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester. To a solution of the intermediate in DCM (5mL) was added TFA (lmL) and the reaction was stirred at r.t. for 30min. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. Purification was repeated by passing the residue down an SCX(POH) cartridge. The basic fraction was collected and concentrated in vacuo to afford the title compound as the free amine. The product was re-dissolved in Et20 (2mL) and a solution of HCl in dioxane (4M, 5 drops) was added. Removal of the solvent in vacuo afforded the title compound: RT = 2.57 min; mlz (ES+) = 499.3 [M+ H]+. Example 35: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl]ethoxy} ridin-2-yl)pyrrolidin-3-yl]piperidin-2-one
Figure imgf000234_0001
A combination of 2-bromo-5-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin- 4-yl]ethoxy}pyridine (Preparation 94, 200mg, 0.50mmol), [(35',45)-4-(2-oxopiperidin-l- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 20, 170mg, 0.61mmol), sodium tert-butoxide (170mg, 1.77mmol) and 2,8,9-triisobutyl-2,5,8,9-tetraaza-l- phosphabicyclo[3.3.3]undecane (17mg, 0.05mmol) in 1,4-dioxane (6mL) was degassed with argon for 10 min. tra(Dibenzylideneacetone)dipalladium (46mg, 0.05mmol) was added and the mixture was degassed with argon for a further 10 min before heating in a microwave reactor at 120°C for 2 x 30 min. The reaction mixture was filtered, washing with MeOH and the solvent removed in vacuo. Purification by preparative HPLC and column
chromatography (DCM:MeOH, 95:5), followed by further purification by chiral HPLC (MeOH:THF:BA 80:20:0.1, 12ml/min, 250nm, RT = 13.0 min) afforded the title compound: RT = 1.83 min; mlz (ES+) = 498.5 [M+ H]+.
Example 36: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl]ethoxy}pyrazin-2-yl)pyrrolidin-3-yl]piperidin-2-one
Figure imgf000234_0002
A combination of 2-bromo-5-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin- 4-yl]ethoxy}pyrazine (Preparation 95, 200mg, 0.51mmol), [(35',45)-4-(2-oxopiperidin-l- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 20, 172mg, 0.61mmol), sodium tert-butoxide (170mg, 1.77mmol) and 2,8,9-triisobutyl-2,5,8,9-tetraaza-l- phosphabicyclo[3.3.3]undecane (17mg, 0.05mmol) in 1,4-dioxane (3mL) was degassed with argon for 10 min. tra(Dibenzylideneacetone)dipalladium (46mg, 0.05mmol) was added and the mixture was degassed with argon for a further 10 min before heating in a microwave reactor at 120°C for 2 x 30 min. The reaction mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected. Removal of the solvent in vacuo afforded the intermediate product [(35',45)-l-(5-{(5)-l-[l-(3-Isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethoxy}pyrazin-2-yl)-4-(2-oxopiperidin-l-yl)pyrrolidin- 3-yl]carbamic acid tert-butyl ester.
To a solution of the product in DCM (5mL) was added TFA (lmL) and the reaction was stirred at r.t. for 20 min. A further portion of TFA (lmL) was added and stirring continued for 20 min. The reaction mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The residue was passed down an SCX(POH) cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. Further purification by preparative HPLC (basic method), SCX cartridge, preparative HPLC
(standard method) then SCX cartridge, with removal of the solvent in vacuo between each purification step, afforded the title compound: RT = 2.63 min; m/z (ES ) = 499.4 [M+ H]+.
Example 37: (3R,45)-4-(2,5-Difluorophenyl)-l-(5-{(S)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl] ethoxy rimidin-2-yl)pyrrolidin-3-ylamine hydrochloride
Figure imgf000235_0001
To a solution of 2-chloro-5-{(i?)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyrimidine (Preparation 102, 182mg, 0.54mmol) and [(3i?,45)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 160mg, 0.54mmol) in DMSO (l . lmL), under argon, was added DBU (81 μΙ_,, 0.49mmol) and the reaction was heated to 80°C for 72 h. The reaction mixture was diluted with DCM (50mL), washed with brine (x 3), dried using a phase separator, and the solvent removed in vacuo. Purification by column chromatography (IH:EtOAc, 60:40) afforded the intermediate product (3i?,45)-4-(2,5-difiuorophenyl)- 1 -(5- {(S)- 1 -[ 1 -(3-ethyl-[ 1 ,2,4]oxadiazol-5- yl)piperidin-4-yl]ethoxy}pyrimidin-2-yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester: RT = 4.39 min; m/z (ES+) = 600.5 [M+ H]+.
To a solution of the product in DCM (5mL) was added TFA (lmL) and the reaction was stirred at r.t. for 20 min. A further portion of TFA (lmL) was added and stirring continued for 20 min. The reaction mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The residue was passed down an SCX(POH) cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected. Removal of the solvent in vacuo afforded the title compound as the free amine: The product was re-dissolved in Et20 (2mL) and a solution of HCl in dioxane (4M, 5 drops) was added. Removal of the solvent in vacuo afforded the title compound: RT = 2.70 min; m/z (ES+) = 500.3 [M+ H]+.
The following examples were prepared by reacting the appropriate chloropyrimidine building block with the desired pyrrolidine building block employing the procedure outlined in Example 37:
Ex. Structure Name LCMS
(3R,4S)-l-(5-{(S)-l-
[l-(3-Ethyl-
[l,2,4]oxadiazol-5- RT = 2.70 yl)piperidin-4- min; m/z
38 yl]ethoxy}pyrimidin- (ES+) =
Figure imgf000236_0001
2-yl)-4-(2,4,5- 518.3 [M + trifluorophenyl)pyrroli H]+.
din-3-yl amine
hydrochloride
Figure imgf000237_0001
Example 40: (3R,45)-4-(2,5-Difluorophenyl)-l-(5-{l-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl]-2-methox ethoxy}pyrimidin-2-yl)pyrrolidin-3-ylamine
Figure imgf000237_0002
The title compound was prepared from [(3i?,45)-4-(2,5-difluorophenyl)-l-(5-{ l-[l -
(3-isopropyl-[l ,2,4]oxadiazol-5-yl)piperidin-4-yl]-2-methoxyethoxy}pyrimidin-2- yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 108) employing the procedure outlined in Example 29: RT = 2.76 min; m/z (ES+) = 544.3 [M + H]+. Example 41: (3R,45)-4-(2,5-Difluorophenyl)-l-(5-{(S)-l-[l-(3-isopropyl-
[l,2,4]oxadiazol-5-yl)piperidin-4-yl]-2-methoxyethoxy}pyrimidin-2-yl)pyrrolidin-3- ylamine
Figure imgf000237_0003
The title compound was prepared via chiral HPLC separation of (3i?,45)-4-(2,5- difluorophenyl)- 1 -(5- { 1 -[1 -(3-isopropyl-[ 1 ,2,4]oxadiazol-5-yl)piperidin-4-yl]-2- methoxyethoxy}pyrimidin-2-yl)pyrrolidin-3-ylamine (Example 40): MTBE:MeOH:THF:n- butylamine 80: 15:5:0.1, l .OmL/min, 250nm.
Example 42: (3R,4S)-4-(2,5-Difluorophenyl)-l-(5-{(R)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yl]-2-methoxyethoxy}pyrimidin-2-yl)pyrrolidin-3- ylamine
Figure imgf000238_0001
The title compound was prepared via chiral HPLC separation of (3i?,45)-4-(2,5- difluorophenyl)- 1 -(5- { 1 -[1 -(3-isopropyl-[ 1 ,2,4]oxadiazol-5-yl)piperidin-4-yl]-2- methoxyethoxy}pyrimidin-2-yl)pyrrolidin-3-ylamine (Example 40): MTBE:MeOH:THF:n- butylamine 80: 15:5:0.1, l .OmL/min, 250nm.
The following examples were prepared by reacting the appropriate tert-butyl carbamate-containing building block with TFA employing the procedure outlined in
Example 29:
Figure imgf000239_0001
Example 47: (3R,4S)-l-{5-[l-(3-Ethyl-[l,2,4]triazolo[4,3-c]pyrimidin-7-yl)piperidin-4- ylmethoxy]pyrimidin-2- l}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-ylamine
Figure imgf000240_0001
The title compound was prepared from [(3i?,45)-l-{5-[l-(3-ethyl-[l,2,4]triazolo[4,3- c]pyrimidin-7-yl)piperidin-4-ylmem^
3-yl]carbamic acid tert-butyl ester (Preparation 127) employing the procedure outlined in Example 29. Further purification by preparative HPLC (basic method) afforded the title compound: RT = 2.57 min; m/z (ES+) = 554.3 [M+ H]+. Example 48: (3R,45)-4-(2,5-Difluorophenyl)-l-(5-{(S)-l-[l-(5-isopropylpyrimidin-2- yl)piperidin-4-yl]ethox rimidin-2-yl)pyrrolidin-3-ylamine
Figure imgf000240_0002
2-Chloro-5-isopropylpyrimidine (19mg, 0.12mmol) and DBU (37μί, 0.25mmol) were added to a solution of (3i?,45)-4-(2,5-difluorophenyl)-l-[5-((5)-l-piperidin-4-yl- ethoxy)pyrimidin-2-yl]pyrrolidin-3-ylamine (Preparation 121, 50mg, O.lmmol) in DMSO
(lmL, lOmmol) and the reaction was heated in a microwave reactor at 100°C for 30 min.
The mixture was partitioned between DCM and water, and passed through a phase separator.
The aqueous phase was washed with further DCM. The organic fractions were combined, concentrated in vacuo, and purified by preparative HPLC. Fractions containing the desired product were passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected. Removal of the solvent in vacuo afforded the title compound: RT = 2.92 min; m/z (ES+) = 524.3 [M+ H]+.
Example 49: 4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyrimidin-5-yloxy}eth l)piperidine-l-carboxylic acid propyl ester
Figure imgf000240_0003
Pyridine (14μΙ^, 0.17mmol) and n-propylchloroformate (19μΙ^, 0.17mmol) were added to a stirred solution of {(3i?,45)-4-(2,5-difluorophenyl)-l-[5-((5)-l-piperidin-4- ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl}carbamic acid 9H-fluoren-9-ylmethyl ester
(Preparation 119, 35mg, 0.06mmol) in DCM (l .OmL) and the reaction continued to stir at r.t. for 16 h. The mixture was washed with water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and Piperidine (200μί, 2.00mmol) was added. The reaction was stirred at r.t. for a further 16 h. The mixture was washed with water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and concentrated in vacuo. Purification by preparative HPLC (basic method) afforded the title compound: RT = 2.87 min; mlz (ES+) = 490.2 [M + H]+.
Example 50: 4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyrimidin-5-yloxy}eth l)piperidine-l-carboxylic acid cyclopropylmethyl ester
Figure imgf000241_0001
Triphosgene (12mg, 0.04mmol) was dissolved in DCM (0.25mL, 3.9mmol) and cooled to 0°C. To the solution was added a mixture of cyclopropylmethanol (9.6μί, 0.12mmol) and pyridine (9.7μΙ., 0.12mmol) in DCM (0.25mL), drop-wise, and the reaction was allowed to warm to r.t.. After 1 h, a solution of {(3i?,45)-4-(2,5-difluorophenyl)-l-[5- ((iS)- 1 -piperidin-4-ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl} carbamic acid 9H-fluoren-9- ylmethyl ester (Preparation 119, 25mg, 0.04mmol) and pyridine (9.ΊμΙ^, 0.12mmol) in DCM (0.5mL) was added, drop-wise, and the reaction was stirred at r.t. for 16 h. The mixture was washed with water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and Piperidine (200μΙ^, 2mmol) was added. The reaction was stirred at r.t. for 16 h. The mixture was washed with water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined, concentrated in vacuo and purified by preparative HPLC (basic method) to afford the title compound: RT = 2.90 min; mlz (ES+) = 502.2 [M + U]+. Example 51: (3R,4S)-4-(2,5-Difluorophenyl)-l-(5-{(S)-l-[l-(5-fluoropyrimidin-2- yl)piperidin-4-yl]ethoxy}pyrimidin-2-yl)pyrrolidin-3-ylamine formic acid salt
Figure imgf000242_0001
The title compound was prepared by reacting {(3i?,4S)-4-(2,5-difluorophenyl)-l-[5- ((5)-l-piperidin-4-ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl}carbamic acid 9H-fluoren-9- ylmethyl ester (Preparation 119) with 2-chloro-5-fluoropyrimidine employing a procedure similar to that outlined in Example 48, but after work-up the crude residue was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. Further purification by preparative HPLC afforded the title compound as the formate salt: RT = 2.97 min; mlz (ES+) = 500.1 [M+ H]+.
Example 52: 4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyrimidin-5-yloxy}eth l)piperidine-l-carboxylic acid cyclopentyl ester
Figure imgf000242_0002
Cyclopentanol (19.8μί, 0.22mmol) and 2,6-lutidine (25μΙ,, 0.22mmol) were added to a solution of triphosgene (22mg, 0.07mmol) in DCM (lmL), and the mixture was stirred at r.t. for 30 min. In a separate vessel, a solution of {(3i?,4S)-4-(2,5-difluorophenyl)-l-[5-((S)- 1 -piperidin-4-ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl} carbamic acid 9H-fluoren-9-ylmethyl ester acetate (Preparation 118, 50mg, 0.07mmol) in DCM (2mL) was washed with sat. NaHCC>3 solution (lmL) and passed through a phase separator to afford a solution of
{(3i?,45)-4-(2,5-difluorophenyl)-l-[5-((5)-l-piperidin-4-ylethoxy)pyrimidin-2-yl]pyrrol^ 3-yl} carbamic acid 9H-fluoren-9-ylmethyl ester as the free base. The cyclopentanol mixture was added to the solution of {(3i?,45)-4-(2,5-difluorophenyl)-l-[5-((5)-l-piperidin-4- ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl} carbamic acid 9H-fluoren-9-ylmethyl ester, followed by 2,6-lutidine (8.4μΙ,, 0.07mmol), and the reaction was stirred at r.t. for 30 min. The mixture was washed with water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and piperidine (200μΙ,, 2mmol) was added. After stirring at r.t. for 60 h, the mixture was washed with water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and concentrated in vacuo.
Purification by preparative HPLC (basic method) afforded the title compound: RT = 2.94 min; mlz (ES+) = 516.4 [M+ H]+. Example 53: 4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyrimidin-5-yloxy}eth l)piperidine-l-carboxylic acid butyl ester
Figure imgf000243_0001
A solution of {(3i?,45)-4-(2,5-difiuorophenyl)-l-[5-((5)-l-piperidin-4- ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl}carbamic acid 9H-fluoren-9-ylmethyl ester acetate (Preparation 118, 50mg, 0.07mmol) in DCM (2mL) was washed with sat. NaHC03 solution (lmL) and passed through a phase separator, washing with DCM (0.5mL), to afford a solution of {(3i?,45)-4-(2,5-difluorophenyl)- 1 -[5-((5)- 1 -piperidin-4-ylethoxy)pyrimidin-2- yl]pyrrolidin-3-yl}carbamic acid 9H-fluoren-9-ylmethyl ester as the free base, n- Butylchloroformate (30.5 μΐ,, 0.24mmol) and 2,6-lutidine (9.2μΙ,, 0.08mmol) were added to the solution and the reaction was stirred at r.t. for 60 min.
The mixture was partitioned between DCM and water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined, piperidine (200μί, 2mmol) was added, and the mixture was stirred at r.t. for 16 h. The mixture was washed with water and passed through a phase separator. The aqueous phase was washed with further DCM, then the organic fractions were combined and concentrated in vacuo. Purification by preparative HPLC (basic method) afforded the title compound: RT = 2.97 min; mlz (ES+) = 504.2 [M+ H]+.
Example 54: 4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyrimidin-5-yloxy}eth l)piperidine-l-carboxylic acid isobutyl ester
Figure imgf000243_0002
The title compound was prepared from {(3i?,45)-4-(2,5-difluorophenyl)-l-[5-((5)-l- piperidin-4-ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl} carbamic acid 9H-fluoren-9-ylmethyl ester acetate (Preparation 118) and isobutylchloro formate employing the procedure outlined in Example 53: RT = 2.87 min; mlz (ES+) = 504.2 [M + H]+.
Example 55: 4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl]pyrimidin-5-yloxy}eth l)piperidine-l-carboxylic acid cyclobutyl ester
Figure imgf000244_0001
Cyclobutanol (17mg, 0.24 mmol) and 2,6-lutidine (28μί, 0.24mmol) were added to a solution of triphosgene (24mg, 0.08mmol) in DCM (1 mL) and the mixture was shaken at r.t. for 30 min. In a separate vessel, a solution of {(3i?,4S)-4-(2,5-difluorophenyl)-l-[5-((S)-l- piperidin-4-ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl} carbamic acid 9H-fluoren-9-ylmethyl ester acetate (Preparation 118, 50mg, 0.07mmol) in DCM was washed with sat. NaHC03 solution and passed through a phase separator to afford a solution of {(3i?,45)-4-(2,5- difluorophenyl)- 1 -[5-((5)- 1 -piperidin-4-ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl} carbamic acid 9H-fluoren-9-ylmethyl ester as the free base. The cyclobutanol mixture was added to the solution of {(3i?,45)-4-(2,5-difluorophenyl)- 1 -[5-((5)- 1 -piperidin-4-ylethoxy)pyrimidin-2- yl]pyrrolidin-3-yl} carbamic acid 9H-fluoren-9-ylmethyl ester and the reaction was shaken at r.t. for 60 min. The mixture was washed with water, passed through a phase separator, and the aqueous phase was washed with further DCM. The organic fractions were combined, piperidine (200 uL, 2 mmol) was added, and the reaction was shaken at r.t. for 16 h. The mixture was washed with water and passed through a phase separator. The aqueous was washed with further DCM, and the organic fractions were combined and concentrated in vacuo. Purification by preparative HPLC (basic method) afforded the title compound: RT = 2.87 min; mlz (ES+) = 502.2 [M + H]+.
The following examples were prepared by reacting {(3i?,45)-4-(2,5-difluorophenyl)- 1 -[5-((iS)- 1 -piperidin-4-ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl} carbamic acid 9H-fluoren-9- ylmethyl ester acetate (Preparation 118) with the appropriate alcohol employing the procedure outlined in Example 55:
Figure imgf000245_0001
Figure imgf000246_0001
Example 64: (3R,4S)-4-(2,5-Difluorophenyl)-l-(5-{(S)-l-[l-(5-ethylpyrimidin-2- yl)piperidin-4-yl]ethox }pyrimidin-2-yl)pyrrolidin-3-ylamine
Figure imgf000247_0001
To a combination of {(3i?,45)-4-(2,5-difluorophenyl)-l -[5-((5)-l-piperidin-4- ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl}carbamic acid 9H-fluoren-9-ylmethyl ester
(Preparation 119, 50mg, 0.08mmol ) and 2-chloro-5-ethylpyrimidine (1 lOmg, 0..08mmol) in DMSO (lmL) was added DBU (36μΙ^, 0.24mmol) and the reaction was heated in a microwave reactor at 100°C for 30 min. The mixture was partitioned between DCM and water, and passed through a phase separator. The aqueous phase was washed with further DCM. The organic fractions were combined, concentrated in vacuo, and purified by preparative HPLC. Fractions containing the desired product were combined, concentrated in vacuo, and purified further by preparative HPLC (basic method) to afford the title compound: RT = 2.82 min; m/z (ES+) = 510.3 [M + H]+.
Example 65: {6-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l- yl] pyrimidin-5-yloxy} eth l)piperidin- 1-yl] pyridazin-3-yl} dimethylamine
Figure imgf000247_0002
The title compound was prepared by reacting {(3i?,45)-4-(2,5-difluorophenyl)-l-[5- ((iS)- 1 -piperidin-4-ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl} carbamic acid 9H-fluoren-9- ylmethyl ester (Preparation 119) with (6-chloropyridazin-3-yl)dimethylamine employing the procedure outlined in Example 48: RT = 2.85 min; m/z (ES+) = 524.3 [M + H]+.
Example 66: (3R,45)-4-(2,5-Difluorophenyl)-l-(5-{(S)-l-[l-(5-propylpyrimidin-2- yl)piperidin-4-yl]ethox rimidin-2-yl)pyrrolidin-3-ylamine
Figure imgf000247_0003
The title compound was prepared by reacting {(3i?,45)-4-(2,5-difluorophenyl)-l-[5- ((iS)- 1 -piperidin-4-ylethoxy)pyrimidin-2-yl]pyrrolidin-3-yl} carbamic acid 9H-fluoren-9- ylmethyl ester (Preparation 119) with 2-chloro-5-propylpyrimidine employing a procedure similar to that outlined in Example 48, but after heating the reaction in a microwave reactor at 100°C for 30 min, a further portion of 2-chloro-5-propylpyrimidine (leq.) was added, and the reaction was heated at 150°C for 30 min: RT = 2.97 min; mlz (ES+) = 524.3 [M+ H]+.
Example 67: {2-[(3R,4S)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l-yl]pyrimidin-5- yl}- {(5)- 1- [l-(3-isopr op l- [ 1 ,2,4] oxadiazol-5-yl)piperidin-4-yl] ethyl} amine
Figure imgf000248_0001
To a solution of [(3i?,45)-4-(2,5-difiuorophenyl)-l-(5-{(5)-l-[l-(3-isopropyl- [1 ,2,4]oxadiazol-5 -yl)piperidin-4-yl]ethylamino } pyrimidin-2-yl)pyrrolidin-3 -yl] carbamic acid tert-butyl ester (Preparation 130, 6mg, O.Olmmol) in DCM (200μί, 3.0mmol) was added TFA (30uL, 0.4mmol) and the reaction was stirred at r.t. for 2.5 h. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The material was further purified by preparative HPLC, and the fractions containing product were concentrated in vacuo. The material was passed down an SCX cartridge again, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo to afford the title compound: RT = 2.57 min; mlz (ES+) = 513.3 [M+ H]+. Example 68: (3R,45)-l-{5-[l-(3-Ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidin-2- -4-(2,4,5-trifluorophenyl)pyrrolidin-3-ylamine hydrochloride
Figure imgf000248_0002
To a solution of [(3i?,45)-l-{5-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidin-2-yl} -4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 131, 171mg, 0.28mmol) in DCM (5mL) was added TFA and the reaction was stirred for 20 min. A further portion of TFA was added and stirring continued for 20 min. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The material was then passed down an SCX(POH) cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The resulting residue was purified by column chromatography (DCM:MeOH, 98:2), followed by preparative HPLC, and the fractions containing product were concentrated in vacuo. The residue was again passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo to afford the title compound as the free amine.
To a solution of the compound in Et20 (2mL) was added a solution of HC1 in dioxane (4M, 5 drops). Removal of the solvent in vacuo afforded the title compound: RT = 2.70 min; mlz (ES+) = 504.2 [M+ H]+.
Example 69: (3R,45)-l-{5-[l-(5-Isopropyl-[l,2,4]oxadiazol-3-yl)piperidin-4- ylmethoxy]pyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-ylamine p- toluenesulfonic aci alt
Figure imgf000249_0001
To a solution of [(3i?,45)-l-{5-[l-(5-isopropyl-[l,2,4]oxadiazol-3-yl)piperidin-4- ylmethoxy]pyrimidin-2-yl} -4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid fert-butyl ester (Preparation 132, 103mg, 0.17mmol) in DCM (5mL) was added TFA (ImL) and the reaction was stirred at r.t. for 20 min. A further portion of TFA (ImL) was added and stirring continued for 20 min. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. To a solution of the product in a combination of MeOH (2mL) and EtOAc (2mL) was added TsOH (25mg, 0.13mmol). Removal of the solvent in vacuo afforded the title compound: RT = 2.87 min; mlz (ES+) = 518.2 [M+ H]+. Example 70: (3R,45)-l-(5-{(S)-l-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyrimidin-2-yl -4-pyridin-2-ylpyrrolidin-3-ylamine hydrochloride
Figure imgf000249_0002
To a solution of 2-chloro-5-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyrimidine (Preparation 63, 81mg, 0.23mmol) and ((tra/?s)-4-pyridin-2- ylpyrrolidin-3-yl)carbamic acid tert-butyl ester (Preparation 136, 61mg, 0.23mmol) in DMSO (0.5mL) was added DBU (39μΙ., 0.23mmol) and the reaction was heated to 100°C for 48 h. The mixture was diluted with DCM, washed with brine (x 3) and passed through a phase separater before removal of the solvent in vacuo. Purification by column
chromatography (IH:EtOAc, 20:80) and further purification by chiral HPLC
(MTBE:MeCN:MeOH, 70:20: 10, 15mL/min, 250nm, RT = 11.46 min) afforded the intermediate compound [(3R, 4S)- 1 -(5- {(S)- 1 -[ 1 -(3 -isopropyl-[ 1 ,2,4]oxadiazol-5- yl)piperidin-4-yl]ethoxy}pyrimidin-2-yl)-4-pyridin-2-ylpyrrolidin-3-yl]carbamic acid tert- butyl ester.
To a solution of the product in dioxane (0.1 mL) was added a solution of HC1 in dioxane (4M, O.lmL) and the reaction was stirred at r.t. for 16 h. Removal of the solvent in vacuo afforded the title compound: RT = 2.52 min; mlz (ES+) = 479.3 [M+ H]+.
Example 71: (3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(2-isopropyl-2H-tetrazol-5- yl)piperidin-4-ylmethox ]pyrimidin-2-yl}pyrrolidin-3-ylamine hydrochloride
Figure imgf000250_0001
To a solution of ((3i?,45)-4-(2,5-difluorophenyl)-l-{5-[l-(2-isopropyl-2H-tetrazol-5- yl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester (Preparation 143, 1 lOmg, 0.18mmol) in DCM (5mL) was added TFA (lmL) and the reaction was stirred at r.t. until complete. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected. Removal of the solvent in vacuo afforded the title compound as the free amine, which was re-dissolved in DCM (5mL). A solution of HC1 in dioxane (4M, 230μί, 0.92mmol)) was added and the mixture was stirred for 30 min. Removal of the solvent in vacuo afforded the title compound: RT = 2.85 min; mlz (ES+) = 500.2 [M+ H]+.
Example 72: (3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(5-isopropyl-[l,3,4]oxadiazol-2- yl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-ylamine
Figure imgf000250_0002
To a solution of ((3i?,4S)-4-(2,5-difluorophenyl)-l-{5-[l-(5-isopropyl- [l,3,4]oxadiazol-2-yl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-yl)carbami acid tert-butyl ester (Preparation 144, 19mg, 0.03mmol) in DCM (2.5mL) was added TFA (0.5mL) and the reaction was stirred at r.t. until complete. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected. Removal of the solvent in vacuo afforded the title compound: RT = 2.62 min; m/z (ES+) = 500.3 [M+ H]
The following examples were prepared by reacting the appropriate tert-butyl carbamate-containing building block with TFA employing the procedure outlined in
Example 72:
Figure imgf000252_0001
Figure imgf000253_0001
Example 81: (3R,4S)-4-(2,5-Difluorophenyl)-l-(5-{l-[5-(2-methoxy-l-methylethyl)- [l,2,4]oxadiazol-3-yl]pi eridin-4-ylmethoxy}pyrimidin-2-yl)pyrrolidin-3-ylamine
Figure imgf000254_0001
To a solution of 3-methoxy-2-methylpropionic acid (Preparation 146, 8.4mg, 0.07mmol) in DMF (1.5mL) was added ((3^4S)-4-(2,5-difluorophenyl)-l-{5-[l-(N- hydroxycarbamimidoyl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-yl)carbam acid tert-butyl ester (Preparation 145, 30mg, 0.05mmol), followed by HOBt (12mg, 0.08mmol), and finally EDCI (16mg, 0.08mmol). The reaction was allowed to stir at r.t. for 16 h before being heated to 80°C for 3 h. The solvent was concentrated in vacuo and the resulting residue was partitioned between DCM and water. The organic phase was separated, washed with sat. NaHCC"3 solution, and the solvent removed in vacuo to afford the intermediate product [(3i?,45)-4-(2,5-difiuorophenyl)-l -(5- { 1 -[5-(2-methoxy-l -methylethyl)- [l,2,4]oxadiazol-3-yl]piperidin-4-ylmethoxy}pyrimidin-2-yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester.
To a solution of the intermediate in DCM (lmL) was added TFA (0. lmL) and the reaction was stirred at r.t. for 2h. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The residue was purified by MDP (acidic conditions), and the fractions containing product were passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH. The basic fraction was collected and concentrated in vacuo to afford the title compound: RT = 2.80 min; m/z (ES+) = 530.2 [M+ H]+.
Example 82: (3R,45)-l-(5-{l-[5-(l,l-Difluoroethyl)-[l,2,4]oxadiazol-3-yl]piperidin-4- ylmethoxy}pyrimidin-2- l)-4-(2,5-difluorophenyl)pyrrolidin-3-ylamine
Figure imgf000254_0002
To a solution of [(3i?,45)-l-(5-{l-[5-(l,l-difluoroethyl)-[l,2,4]oxadiazol-3- yl]piperidin-4-ylmethoxy}pyrimidin-2-yl)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 147, 38mg, 0.06mmol) in DCM (2mL) was added TFA (0.2mL) and the reaction was stirred at r.t. for 2 h. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. Purification by SCX cartridge was repeated to afford the title compound: RT = 2.87 min; mlz (ES+) = 522.5 [M+ H]+. Example 83: (3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(3-isobutyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethox ]pyrimidin-2-yl}pyrrolidin-3-ylamine hydrochloride
Figure imgf000255_0001
To a combination of [(3i?,45)-l-[5-(l-cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]- 4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141, 50mg, O. lOmmol) and N-hydroxy-3-methylbutyramidine (14mg, 0.12mmol) in EtOH (2mL) was added a solution of Zinc(II)chloride in Et20 (1M, 0.12mL, 0.12mmol) and the reaction was stirred at r.t. for 90min. To the mixture was added cone. HC1 (12M, 44μΕ, 0.53mmol) and stirring continued at r.t. for 90 min, before heating the reaction in a microwave reactor at 100°C for 30 min. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The residue was further purified by MDP (basic conditions) to afford the title compound as a free amine. The non-basic fraction from SCX purification was concentrated in vacuo and purified by MDP (basic conditions) to afford a further amount of the title compound as the free amine.
The whole reaction procedure was repeated, but the crude mixture was purified directly by MDP (basic conditions) to afford a third amount of the title compound as the free amine.
The products were combined in DCM (5mL) and a solution of HC1 in dioxane (4M, ll^^L, 0.78mmol) was added. The reaction was stirred at r.t. for 30 min, before removal of the solvent in vacuo to afford the title compound: RT = 2.84 min; mlz (ES+) = 514.3 [M + H]+. Example 84: (3R,4S)-4-(2,5-Difluorophenyl)-l-(5-{l-[3-((S)-l-methoxyethyl)-
[l,2,4]oxadiazol-5-yl]piperidin-4-ylmethoxy}pyrimidin-2-yl)pyrrolidin-3-ylamine hydrochloride
Figure imgf000256_0001
To a combination of [(3i?,45)-l-[5-(l-cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]-
4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141, 150mg, 0.29mmol) and (S)-N-hydroxy-2-methoxypropionamidine
(Preparation 148, 46mg, 0.35mmol) in EtOH (3mL) was added a solution of
Zinc(II)chloride in Et20 (1M, 0.35mL, 0.35mmol) and the reaction was stirred at r.t. for 60 min. To the mixture was added cone. HCl solution (12M, 0.13mL, 1.6mmol), and stirring continued at r.t. for 5min before heating the reaction in a microwave reactor at 80°C for 30min. The solvent was removed in vacuo and crude material purified by preparative HPLC (basic method). Further purification by MDP (basic conditions) afforded the title compound as the free amine. To a solution of the product in DCM (5mL) was added a solution of HCl in dioxane (4M, 0.2mL, 0.9mmol). The reaction was stirred at r.t. for 30min before removal of the solvent in vacuo to afford the title compound: RT = 2.62 min; m/z (ES ) = 516.1 [M + H]+.
Example 85: (3R,45)-l-(5-{l-[3-(l,l-Difluoroethyl)-[l,2,4]oxadiazol-5-yl]piperidin-4- ylmethoxy}pyrimidin-2- l)-4-(2,5-difluorophenyl)pyrrolidin-3-ylamine hydrochloride
Figure imgf000256_0002
To a combination of [(3i?,45)-l-[5-(l-cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]- 4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141, 150mg, 0.29mmol) and 2,2-difluoro-N-hydroxypropionamidine (Preparation 149, 43mg, 0.35mmol) in EtOH (3mL) was added a solution of Zinc(II)chloride in Et20 (1M, 0.35mL, 0.35mmol) and the reaction was stirred at r.t. for 60 min. To the mixture was added a solution of HCl in dioxane (4M, 0.36mL, 1.4mmol) and the reaction was heated in a microwave reactor at 80°C for 30min before increasing the temperature to 100°C for a further 30 min. A second portion of HCl in dioxane (4M, 0.36mL, 1.4mmol) was added and the reaction was heated in a microwave reactor at 120°C for 30 min. The solvent was removed in vacuo and the resulting residue was partitioned between DCM and sat. NaHC03 solution. The organic phase was separated, dried (MgS04), and the solvent was removed in vacuo. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The material was purified by preparative HPLC, and the fractions containing product were concentrated in vacuo. The material was passed down an SCX cartridge for a second time, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo to afford the title compound as the free amine.
To a solution of the product in DCM (2mL) was added a solution of HC1 in dioxane
(0.36mL) and the reaction was stirred at r.t. for 30 min. Removal of the solvent in vacuo afforded the title compound: RT = 2.86 min; mlz (ES+) = 522.6 [M+ H]+.
Example 86: (3R,45)-4-(2,5-Difluorophenyl)-l-{5-[l-(5-ethyl-[l,2,4]oxadiazol-3- yl)piperidin-4-ylmethox ] pyrimidin-2-yl}pyrr olidin-3-ylamine
Figure imgf000257_0001
To a solution of ((3i?,45)-4-(2,5-difiuorophenyl)-l-{5-[l-(5-ethyl-[l,2,4]oxadiazol-3- yl)piperidin-4-ylmethoxy]pyrimidin-2-yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester (Preparation 150, 25mg, 0.04mmol) in DCM (2mL) was added TFA (0.15mL) and the reaction was stirred at r.t. for 90 min The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The resulting product was stirred in a combination of MeCN and water (1 : 1, 2mL), containing HC02H ( 1 drop), for 10 mins, and purification by SCX was repeated to afford the title compound: RT = 2.77 min; mlz (ES ) = 486.3 [M+ H]+.
The following examples were prepared by reacting the corresponding Boc-protected building block with TFA, employing the procedure outlined in Example 86:
Figure imgf000258_0001
Figure imgf000259_0001
Example 94: (3R,4S)-4-(2,5-Difluorophenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yloxy]pyrimidin-2- l}pyrrolidin-3-ylamine
Figure imgf000260_0001
To a combination of 2-chloro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yloxy]pyrimidine (containing 40% 2-bromo-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yloxy]pyrimidine, Preparation 158, 55mg, 0.16mmol) and [(3i?,45)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 59mg, 0.20mmol) in DMSO (0.33mL) was added DBU (25 uL, 0.16mmol) and the reaction was heated to 80°C for 16 h. The mixture was diluted with DCM, washed with brine, and concentrated in vacuo. Purification by column chromatography (IH:EtOAc, 1 : 1) afforded the intermediate product ((3i?,45)-4-(2,5-difluorophenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)piperidin-4-yloxy]pyrimidin-2-yl}pyrrolidin-3-yl)carbamic acid tert-butyl ester: RT = 4.37 min; m/z (ES+) = 586.2 [M+ H]+.
To a solution of the product in DCM (lOmL) was added TFA (2mL) and the reaction was stirred at r.t. for 30 min. The reaction mixture was passed directly down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo to afford the title compound: RT = 2.72 min; m/z (ES ) = 486.2 [M+ H]+. Example 95: (3R,45)-4-(2,5-Difluorophenyl)-l-(5-{l-[3-(2-methoxyethyl)-
[l,2,4]oxadiazol-5-yl]piperidin-4-ylmethoxy}pyrimidin-2-yl)pyrrolidin-3-ylamine hydrochloride
Figure imgf000260_0002
To a solution of 3-methoxypropionitrile (1.07mL, 11.8mml) in EtOH (7mL) was added a solution of hydroxylamine (50% in water, 3. lmL, 51.2mmol) and the reaction was heated to reflux for 16 h. The solvent was removed in vacuo, azeotroping with toluene, to afford the intermediate product N-Hydroxy-3-methoxypropionamidine. To a portion of the intermediate (41mg, 0.4mmol) and [(3i?,45)-l-[5-(l- cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141, 150mg, 0.29mmol) in EtOH (2.5mL) was added a solution of Zinc(II)chloride in Et20 (1M, 0.35mL, 0.35mmol) and the reaction was stirred at r.t. for 60 min. To the mixture was added cone. HC1 solution (12M, 0.13mL, 1.6mmol), and the reaction was heated in a microwave reactor at 80°C for 30min. The solvent was removed in vacuo and the resulting residue was partitioned between DCM and sat. NaHC03 solution. The organic phase was separated, and the aqueous phase was extracted with DCM. Organic fractions were combined, concentrated in vacuo, and purified by MDP (basic conditions) to afford the title compound as the free amine.
To a solution of the product in DCM (5mL) was added a solution of HC1 in dioxane (4M, 0.36mL, 1.4mmol) and the reaction was stirred at r.t. for 30 min. Removal of the solvent in vacuo afforded the title compound: RT = 2.52 min; m/z (ES+) = 516.3 [M+ H]+. Example 96: (3R,4S)-4-(2,5-Difluorophenyl)-l-{5-[l-(3-methoxymethyl-[l,2,4]oxadiazol- 5-yl)piperidin-4-ylmethox ]pyrimidin-2-yl}pyrrolidin-3-ylamine hydrochloride
Figure imgf000261_0001
To a solution of N-hydroxy-2-methoxyacetamidine (Preparation 167, 36mg, 0.35mmol) and [(3i?,45)-l-[5-(l-cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141, 150mg,
0.29mmol) in EtOH (2.5mL) was added a solution of Zinc(II)chloride in Et20 (1M, 0.35mL, 0.35mmol) and the reaction was stirred at r.t. for 60 min. To the mixture was added cone. HC1 solution (12M, 0.13mL, 1.6mmol), and the reaction was heated in a microwave reactor at 80°C for 30min. The solvent was removed in vacuo and the resulting residue was partitioned between DCM and sat. NaHC03 solution. The organic phase was separated, and the aqueous phase was extracted with DCM. Organic fractions were combined, concentrated in vacuo, and purified by MDP (basic conditions) to afford the title compound as the free amine. To a solution of the product in DCM (5mL) was added a solution of HC1 in dioxane (4M, 0.36mL, 1.4mmol) and the reaction was stirred at r.t. for 30 min. Removal of the solvent in vacuo afforded the title compound: RT = 2.55 min; m/z (ES+) = 502.3 [M+ H]+. The following examples were prepared by reacting [(3i?,45)-l-[5-(l-cyanopiperidin- 4-ylmethoxy)pyrimidin-2-yl]-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141) with the appropriate amidine intermediate employing the procedure outlined in Example 96:
Figure imgf000263_0001
Example 101: (3R,4S)-l-{5-[l-(3-Difluoromethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidin-2- l}-4-(2,5-difluorophenyl)pyrrolidin-3-ylamine
Figure imgf000264_0001
To a solution of 2,2-difluoro-N-hydroxyacetamidine (Preparation 169, 38mg, 0.35mmol) and [(3i?,45)-l-[5-(l-cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141, 150mg, 0.29mmol) in EtOH (2.5mL) was added a solution of Zinc(II)chloride in Et20 (1M, 0.35mL, 0.35mmol) and the reaction was stirred at r.t. for 60 min. To the mixture was added cone. HC1 solution (12M, 0.13mL, 1.6mmol), and the reaction was heated in a microwave reactor at 80°C for 30min. The solvent was removed in vacuo and the resulting residue was partitioned between DCM and sat. NaHCC"3 solution. The organic phase was separated, and the aqueous phase was extracted with DCM. Organic fractions were combined, concentrated in vacuo, and purified by MDP (basic conditions). Fractions containing the product were concentrated in vacuo and further purified by MDP (acidic conditions). Fractions containing the product were passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. Trituration with Et20 afforded the title compound: RT = 2.70 min; m/z (ES+) = 508.2 [M+ H]+.
Example 102: (3R,45)-4-(2,5-Difluorophenyl)-l-(5-{l-[3-(l-methylcyclopropyl)- [l,2,4]oxadiazol-5-yl]pi eridin-4-ylmethoxy}pyrimidin-2-yl)pyrrolidin-3-ylamine
Figure imgf000264_0002
To a solution of N-hydroxy-1 -methyl cyclopropanecarboxamidme (Preparation 170, 40mg, 0.35mmol) and [(3i?,45)-l-[5-(l-cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141, 150mg, 0.29mmol) in EtOH (3.5mL) was added a solution of Zinc(II)chloride in Et20 (1M, 0.35mL, 0.35mmol) and the reaction was stirred at r.t. for 90 min. To the mixture was added cone. HC1 solution (12M, 0.12mL, 1.4mmol), and the reaction was heated in a microwave reactor at 80°C for 30min. The solvent was removed in vacuo and the resulting residue was partitioned between DCM and sat. NaHCOs solution. The organic phase was separated, and the aqueous phase was extracted with DCM. Organic fractions were combined, concentrated in vacuo, and purified by MDP (acidic conditions). Fractions containing product were collected and the solvent removed in vacuo to afford the title compound: RT = 2.89 min; mlz
Figure imgf000265_0001
Example 103 : (3R,45)-4-(2,5-Difluor ophenyl)- 1-{5- [ l-(3-ethoxymethyl- [1 ,2,4] oxadiazol- 5-yl)piperidin-4-ylmethox ]pyrimidin-2-yl}pyrrolidin-3-ylamine formate salt
Figure imgf000265_0002
2-Ethoxy-N-hydroxyacetamidine (Preparation 173) was reacted with [(3i?, S)-l-[5- (1 -cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]-4-(2,5-difluorophenyl)pyrrolidin-3- yljcarbamic acid tert-butyl ester (Preparation 141) employing the procedure outlined in Example 102. Removal of the solvent in vacuo afforded the title compound as the formate salt: RT = 2.65 min; mlz (ES+) = 516.5 [M+ H]+. Example 104: (3R,45)-4-(2,5-Difluorophenyl)-l-(5-{l-[(R)-3-(tetrahydrofuran-2-yl)- [l,2,4]oxadiazol-5-yl]piperidin-4-ylmethoxy}pyrimidin-2-yl)pyrrolidin-3-ylamine formate salt
Figure imgf000265_0003
(i?)-N-Hydroxytetrahydrofuran-2-carboxamidine (Preparation 174) was reacted with [(3i?,45)-l-[5-(l-cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141) employing a similar method to that outlined in Example 102. Purification by MDP (acidic conditions) was carried out twice to afford the title compound as the formate salt: RT = 2.63 min; mlz (ES+) = 528.5 [Μ+ ηγ. Example 105: (3R,4S)-4-(2,5-Difluorophenyl)-l-(5-{l-[3-(l-fluoro-l-methylethyl)- [l,2,4]oxadiazol-5-yl]pi eridin-4-ylmethoxy}pyrimidin-2-yl)pyrrolidin-3-ylamine
Figure imgf000266_0001
The title compound was prepared by reacting 2-fluoro-N-hydroxy-2- methylpropionamidine (Preparation 171) with [(3 ?,45)-l-[5-(l-cyanopiperidin-4- ylmethoxy)pyrimidin-2-yl]-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141) employing a similar procedure to that outlined in Example 102, but purification was carried out by MDP (basic conditions): RT = 2.75 min; m/z (ES ) = 518.2 [M+ H]+.
Example 106 : (3R,45)-1 -{5- [ l-(3-tert-Butyl- [ 1 ,2,4] oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidin-2- l}-4-(2,5-difluorophenyl)pyrrolidin-3-ylamine
Figure imgf000266_0002
The title compound was prepared by reacting N-hydroxy-2,2- dimethylpropionamidine with [(3R,4S)- 1 -[5-(l -cyanopiperidin-4-ylmethoxy)pyrimidin-2-yl]- 4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 141) employing a similar procedure to that outlined in Example 102, but purification was carried out by MDP (basic conditions): RT = 2.87 min; m/z (ES+) = 514.2 [M+ H]+. Example 107: 2-[(3R,45)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l-yl]-5-[l-(3- isopropyl-[l,2,4]oxadiazol-5- l)piperidin-4-ylmethoxy]nicotinonitrile
Figure imgf000266_0003
To a combination of [(l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]methanol (Preparation 1, 23mg, O.lOmmol) and [(3i?,4S)-l-[3-cyano-5-(4,4,5,5-tetramethyl- [1 ,3,2]dioxaborolan-2-yl)pyridin-2-yl]-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 176, 109mg, 0.21mmol) in DCM (lOmL) was added
Triethylamine (72μΙ^, 0.52mmol), followed by copper(II)acetate monohydrate (22mg, 0.1 lmmol). The flask was sealed and the reaction was stirred at r.t. for 5 days. TFA (5mL) was added directly to the reaction and stirring continued for 1 h. The reaction was poured directly onto a pre-activated (1M HCl then MeOH) SCX cartridge, eluting with MeOH then 7.5% NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. The resulting residue was purified by column chromatography (IH:EtOAc:MeOH, 80:20:0 - 0:100:0, then 0:95:5) and the fractions containing product were combined and concentrated in vacuo. Further purification by preparative HPLC (basic method) afforded the title compound: RT = 2.97 min; mlz (ES+) = 524.3 [M+ H]+. Example 108: 5-[(3R,45)-3-Amino-4-(2,5-difluorophenyl)pyrrolidin-l-yl]-2-[l-(3- isopropyl-[l,2,4]oxadiazol-5- l)piperidin-4-ylmethoxy]nicotinonitrile
Figure imgf000267_0001
To an oven dried sealable tube equipped with magnetic stirrer, under an atmosphere of argon, was added [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 61.7mg, 0.21mmol), 5-bromo-2-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy]nicotinonitrile (Preparation 177, 70.0mg, 0.2mmol), sodium tert- butoxide (19.9mg, 0.21mmol) and biphenyl-2-yl(di-fert-butyl)phosphine (10.3mg,
0.03mmol), followed by toluene (2mL). The resulting solution was stirred vigorously and bubbled with argon for 20 min. bis(Dibenzylideneacetone)palladium (7.89mg, 0.0 lmmol) was then added and the tube sealed securely before heating to 75°C for 19 h. The reaction mixture was poured directly onto a pre-activated (1M HCl then MeOH) SCX cartridge, eluting with MeOH then 7.5% NH4OH in MeOH, and both fractions were collected and concentrated in vacuo. To a solution of the residue in DCM (lOmL) was added TFA (5mL) and the reaction was stirred at r.t. for 40 min. The crude mixture was passed directly down a pre-activated (1M HCl then MeOH) SCX cartridge, eluting with MeOH then 7.5% NH4OH in MeOH, and the basic fraction was collected and concentrated in vacuo. Further purification by preparative HPLC (basic method) afforded the title compound: RT =
2.95 min; mlz (ES+) = 524.3 [M+ H]+. Example 109: (4-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxymethyl}-piperidin-l-yl)-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- methanone
Figure imgf000268_0001
To a solution of [(3i?,45)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazole-5-carbonyl)- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3
acid tert-butyl ester (Preparation 179, 35mg, 53.6μηιο1) in DCM (2.0mL) was added TFA (0.2mL, 2mmol) and the resulting solution was stirred at r.t. for 2 h. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected, concentrated in vacuo and purified by preparative HPLC (basic method) to afford the title compound: RT = 2.75 min; m/z (ES+) = 546.23 [M+ H]+.
Example 110 : l-(4- {2- [(3R,45)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- 1-yl] - pyrimidin-5-yloxymethyl -piperidin-l-yl)-3-methyl-butan-l-one
Figure imgf000268_0002
To a solution of [(3i?,45)-l-{5-[l-(3-methyl-butyryl)-piperidin-4-ylmethoxy]- pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 93, 25mg, 42.6μιηο1) in DCM (2.0mL) was added TFA (0.2mL, 2mmol) and the resulting solution was stirred at r.t. for 2 h. The crude mixture was passed down an SCX cartridge, eluting with MeOH then NH4OH in MeOH, and the basic fraction collected and concentrated in vacuo to afford the title compound: RT = 2.62 min; m/z (ES ) = 492.26 [M +
H]+. Example 111: (3R,4S)-l-(5-{(S)-l-[l-(Butane-l-sulfonyl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifluoro- henyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000269_0001
To a solution of [(3R,4S)-l-(5-{(S)-l-[l-(¾utane-l-sulfonyl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 186, 60mg, 90μηιο1) in DCM (2mL) was added TFA (0.2mL) and the resulting reaction mixture stirred at RT for 4 h. The crude mixture was passed down an SCX cartridge, eluting with DCM, then MeOH then 3.5M NH3 in MeOH, and the basic fraction collected and concentrated in vacuo. The product was dissolved in DCM (3mL) and 4M HCl in dioxane (31 uL, 124μιηο1) was added. The resulting reaction mixture was stirred at r.t. for 0.5 h before removing the solvent in vacuo to afford the title compound: RT = 2.93 min; m/z
Figure imgf000269_0002
Example 112: (3R,45)-l-(5-{(S)-l-[l-(2-Methyl-propane-l-sulfonyl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4- 2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000269_0003
The title compound was prepared from [(3R,4S)- 1 -(5- {(S)- 1-[1 -(2 -methyl-propane- 1- sulfonyl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3- yl]-carbamic acid tert-butyl ester (Preparation 187) employing the procedure outlined in Example 111: RT = 2.92 min; m/z (ES+) = 542.13 [M+ H]+.
Example 113: (3R,45)-l-(5-{(S)-l-[l-(Propane-2-sulfonyl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifluoro- henyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000269_0004
The title compound was prepared from [(3R,4S)- 1 -(5- {(S)- 1 -[ 1 -(propane-2-sulfonyl)- piperidin-4-yl]-ethoxy} -pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 188) employing the procedure outlined in Example 111 : RT = 2.80 min; mlz (ES+) = 528.12 [M + H]+.
Example 114: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-yl] -ethoxy}- rimidin-2-yl)-pyrrolidin-3-yl] -5-fluoro-lH-pyridin-2-one
Figure imgf000270_0001
To a solution of 2-chloro-5- {(5)-l-[l-(3-ethyl-[l ,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyrimidine (Preparation 102, HOmg, 325μmol) and l-((trans)-4-amino- pyrrolidin-3-yl)-5-fluoro-lH-pyridin-2-one (Preparation 191, 32.0mg, 0.162mmol) in DMSO (lmL) was added DBU (32μί, 210μmol) and the resulting reaction mixture was heated under microwave irradiation at 120°C for 65 minutes. The reaction mixture was partitioned between DCM and water and passed through a phase separator. The organics were concentrated in vacuo and the crude product was purified by preparative HPLC and loaded onto an SCX cartridge. The cartridge was eluted with methanol, then 3.5M NH3 in MeOH, and the basic fraction collected and concentrated in vacuo to afford l-[(trans)-4- amino-1 -(5- {(S)- 1 -[ 1 -(3 -ethyl- [1 ,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy} -pyrimidin-2- yl)-pyrrolidin-3-yl]-5-fluoro-lH-pyridin-2-one. Purification by chiral HPLC
(MTBE:MeOH:THF:n-butylamine 50:30:20:0.1 , 12mL/min, 250nm) afforded the title compound: RT = 2.45 min; m/z (ES+) = 499.19 [M+ H]+.
Example 115: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-yl]-ethoxy}-pyrimidin-2- l)-pyrrolidin-3-yl]-lH-pyridin-2-one
Figure imgf000270_0002
1 -[(Trans)-4-amino- 1 -(5- {(S)- 1 -[ 1 -(3-ethyl-[l ,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-lH-pyridin-2-one was synthesised from l-((trans)- 4-amino-pyrrolidin-3-yl)-lH-pyridin-2-one (Preparation 192) and 2-chloro-5- {(5)-l-[l-(3- ethyl-[l ,2,4]oxadiazol-5-yl)piperidin-4-yl]ethoxy}pyrimidine (Preparation 102) employing a procedure similar to that outlined in Example 114. Purification by chiral HPLC (MeOH:THF:n-butylamine 80:20:0.1 , 13mL/min, 250nm) afforded the title compound: RT =2.37min; m/z (ES+) = 481.19 [M+ H]+.
Example 116: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-yl]-ethoxy}- rimidin-2-yl)-pyrrolidin-3-yl]-4-methyl-lH-pyridin-2-one
Figure imgf000271_0001
1 -[(Trans)-4-amino- 1 -(5- {(S)- 1 -[ 1 -(3-ethyl-[l ,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-4-methyl-lH-pyridin-2-one was synthesized from l-((trans)-4-amino-pyrrolidin-3-yl)-4-methyl-lH-pyridin-2-one (Preparation 193) and 2- chloro-5-{(5)-l-[l -(3-ethyl-[l ,2,4]oxadiazol-5-yl)piperidin-4-yl]ethoxy}pyrimidine
(Preparation 102) employing a procedure similar to that outlined in Example 114.
Purification by chiral HPLC (MeOH:THF:n-butylamine 80:20:0.1 , 13mL/min, 250nm) followed by further purification by preparative HPLC afforded the title compound: RT = 2.47min; m/z (ES+) = 495.25 [M+ H]+.
Example 117: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-yl]-ethoxy}- rimidin-2-yl)-pyrrolidin-3-yl]-5-methyl-lH-pyridin-2-one
Figure imgf000271_0002
1 -[(Trans)-4-amino- 1 -(5- {(S)- 1 -[ 1 -(3-ethyl-[l ,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl] -5 -methyl- lH-pyridin-2-one was synthesized from l-((trans)-4-amino-pyrrolidin-3-yl)-5-methyl-lH-pyridin-2-one (Preparation 194) and 2- chloro-5-{(5)-l-[l -(3-ethyl-[l ,2,4]oxadiazol-5-yl)piperidin-4-yl]ethoxy}pyrimidine
(Preparation 102) employing a procedure similar to that outlined in Example 114.
Purification by chiral HPLC (MeOH:MTBE:THF:n-butylamine 60:20:20:0.1 , 13mL/min, 250nm) followed by further purification by preparative HPLC afforded the title compound: LCMS: RT = 2.45min; m/z (ES+) = 495.24 [M+ H]+. Example 118: l-((3S,4S)-4-Amino-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin- 4-ylmethoxy]-pyrimidin-2- l}-pyrrolidin-3-yl)-5-fluoro-lH-pyridin-2-one
Figure imgf000272_0001
1 -((Trans)-4-amino- 1 - {5 -[ 1 -(3-isopropyl-[ 1 ,2,4]oxadiazol-5-yl)-piperidin-4-ylmethoxy] - pyrimidin-2-yl}-pyrrolidin-3-yl)-5-fluoro-lH-pyridin-2-one was synthesized from l-((trans)- 4-amino-pyrrolidin-3-yl)-5-fluoro-lH-pyridin-2-one (Preparation 195) and 2-choro-5-[l-(3- isopropyl-[l ,2,4]oxadiazol-5-yl)piperidin-4-ylmethoxy]pyrimidine (Preparation 2)
employing a procedure similar to that outlined in Example 114. Purification by chiral HPLC (MTBE:MeOH:THF:n-butylamine 50:40:10:0.1, 14mL/min, 250nm) afforded the title compound: LCMS: RT = 2.43 min; m/z (ES+) = 499.25 [M+ H]+.
Example 119: (3R,45)-4-(2,5-Difluoro-phenyl)-l-(5-{(S)-l-[l-(3-isopropyl-
[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrazin-2-yl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000272_0002
2-Bromo-5-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyrazine (Preparation 95, 150mg, 380μmol), [(3R,4S)-4-(2,5- difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 140mg, 460μιηο1), sodium tertiary butoxide (l lOmg, l . lmmol) and 2,8,9-triisobutyl-2,5,8,9-tetraaza- l-phosphabicyclo[3.3.3]undecane (13mg, 38μmol) were combined in toluene (2mL) in a sealed tube and degassed with argon for 10 min. Tris(dibenzylideneacetone)dipalladium(0) chloroform adduct (20mg, 19μιηο1) was added and the reaction mixture degassed with argon for a further 5 min prior to heating at 120°C for 1 h under microwave irradiation. The reaction mixture was cooled to r.t., loaded onto an SCX cartridge, then eluted with MeOH followed by NH3 in MeOH (7M) and the basic fractions concentrated in vacuo. The remainder was dissolved in DCM (4mL), TFA (lmL) was added and the resulting reaction mixture was stirred at r.t. for 30 min. The reaction mixture was loaded onto an SCX cartridge, then eluted with MeOH followed by NH3 in MeOH (7M) and the basic fractions concentrated in vacuo. Purification by preparative HPLC (basic method) afforded (3R,4S)-4- (2,5-difluoro-phenyl)-l-(5-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrazin-2-yl)-pyrrolidin-3-yl amine, which was dissolved in DCM (lmL) prior to the addition of HC1 in dioxane (4M). Removal of the solvent in vacuo afforded the title compound: RT = 3.25min; mlz (ES+) = 514.1 [M+ H]+.
Example 120: (3R,45)-4-(2,5-Difluoro-phenyl)-l-(6-{(5)-l-[l-(3-isopropyl-
[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyridazin-3-yl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000273_0001
3-Chloro-6-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}- pyridazine (Preparation 197, 115mg, 327μmol), [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin- 3-yl]carbamic acid tert-butyl ester (Preparation 48, 117mg, 392μmol) and 1,8- diazabicyclo[5.4.0]undec-7-ene (59.7mg, 392μmol) in DMSO (654μΕ) in a sealed tube were heated at 80°C for 72 h and at 100°C for 24 h. Upon cooling, the reaction mixture was poured into DCM (200mL), washed with brine (200mL) and concentrated in vacuo. The remainder was redissolved in DCM (6mL), TFA (2mL) was added and the resulting reaction mixture was stirred at r.t. for 1 h. The reaction mixture was loaded onto an SCX cartidge and eluted with MeOH, followed by NH3 in MeOH (7M). The basic fractions were concentrated in vacuo and the remainder redissolved in MeOH and loaded onto a phosphonic acid SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M). The basic fractions were concentrated in vacuo and purified by column chromatography (DCM:MeOH; 96:4) to afford (3i?,45)-4-(2,5-difluoro-phenyl)- 1 -(6- {(S)- 1 -[ 1 -(3-isopropyl-[ 1 ,2,4]oxadiazol-5-yl)- piperidin-4-yl]-ethoxy}-pyridazin-3-yl)-pyrrolidin-3-ylamine. The product was dissolved in Et20 (2mL) and HC1 in 1,4-Dioxane (4M, 0.3mL) was added. The solvent was removed in vacuo to afford the title compound: RT = 2.55min; mlz (ES ) = 514.2 [M+ H]+. Example 121: (3R,4S)-4-(2,5-Difluoro-phenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)-piperidin-4-ylmethoxy]-4-methoxy-pyrimidin-2-yl}-pyrrolidin-3-ylamine hydrochloride
Figure imgf000274_0001
To a solution of ((3i?,45)-4-(2,5-difluoro-phenyl)-l-{5-[l-(3-isopropyl-
[l,2,4]oxadiazol-5-yl)-piperidin-4-ylmethoxy]-4-methoxy-pyrimidin-2-yl}-pyrrolid^ carbamic acid tert-butyl ester (Preparation 200, 68.7mg, 109μηιο1) in DCM (5mL) was added TFA (lmL) and the resulting reaction mixture was stirred at r.t. for 30 min. Further TFA (lmL) was added and the reaction mixture stirred at r.t. for 1 h. The reaction mixture was loaded onto an SCX cartidge and eluted with MeOH followed by NH3 in MeOH (7M). The basic fractions were concentrated in vacuo and purified by column chromatography (DCM:MeOH; 195:5) to afford (3i?,45)-4-(2,5-difluoro-phenyl)-l-{5-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-ylmethoxy]-4-methoxy-pyrimidin-2-yl}-pyrrolidin-3- ylamine. The product was redissolved in DCM (2mL) and HC1 in 1,4-dioxane (4M, 0.2mL) was added. The solvent was removed in vacuo to afford the title compound: RT = 2.67min; m/z (ES+) = 530.3 [M+ H]
Example 122: (3R,45)-4-(2,5-Difluoro-phenyl)-l-(5-{(5)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyridin-2-yl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000274_0002
Toluene (2mL) was added to 2-bromo-5-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-yl]ethoxy}pyridine (Preparation 94, 150mg, 380μιηο1), [(3i?,45)-4-(2,5- difluorophenyl)pyrrolidin-3-yl] carbamic acid tert-butyl ester (Preparation 48, 150mg, 0.49mmol), sodium tertiary butoxide (HOmg, l .lmmol) and 2,8,9-triisobutyl -2,5,8,9- tetraaza -1-phosphabicyclo [3.3.3]undecane (14mg, 0.041mmol) and the resulting reaction mixture was degassed with argon for 10 min.Tris(dibenzylideneacetone)dipalladium(0) chloroform adduct (20mg, 19μιηο1) was added and the reaction mixture degassed with argon for a further 5 min prior to heating at 120°C for 1 h under microwave irradiation. Upon cooling, the reaction mixture was loaded onto an SCX cartridge and eluted with MeOH followed by NH3 in MeOH (7M). The basic fractions were concentrated in vacuo, redissolved in DCM (lOmL) and TFA (2mL) was added. The resulting reaction mixture was stirred at r.t for 30 min, loaded onto an SCX cartridge and eluted with MeOH followed by N¾ in MeOH (7M). The basic fractions were concentrated in vacuo and the remainder purified by preparative HPLC (basic method) to afford (3i?,45)-4-(2,5-difluoro-phenyl)-l-(5- {(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyridin-2-yl)- pyrrolidin-3-ylamine. The product was dissolved in DCM and HC1 in 1,4-dioxane (4M) was added. Removal of the solvent in vacuo afforded the title compound: RT = 2.54min; mlz (ES+) = 513.29 [M+ H]
Example 123: 4-((S)-l-{2-[(3S,4S)-3-Amino-4-(2-oxo-piperidin-l-yl)-pyrrolidin-l-yl]- pyrimidin-5-yloxy}-ethyl)- iperidine-l-carboxylic acid isopropyl ester
Figure imgf000275_0001
To a solution of 4-((5)-l-{2-[(35',45)-3-tert-butoxycarbonylamino-4-(2-oxo- piperidin- 1 -yl)-pyrrolidin- 1 -yl] -pyrimidin-5 -yloxy } -ethyl)-piperidine- 1 -carboxylic acid isopropyl ester (Preparation 202, 57mg, 99μιηο1) in DCM (lmL) was added HC1 in 1, 4- dioxane (4M, O.lmL) and the resulting reaction mixture was stirred at r.t. for 16 h. The solvent was removed in vacuo to afford the title compound: RT = 2.62min; mlz (ES+) = 475.2 [M+ H]+.
Example 124: 2-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l- yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-ethanol
hydrochloride
Figure imgf000275_0002
To a solution of [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2- yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 205, 150mg, 0.28mmol) and 3,N-dihydroxy-propionamidine (35mg, 0.34mmol) in EtOH (15mL) was added zinc dichloride in Et20 (1M, 0.34mL, 0.34mmol) and the resulting reaction mixture was stirred at r.t. for 3 h. HCl in 1,4-dioxane (4M, 0.35mL, 1.4mmol) was added and the reaction mixture heated at 110°C for 30 min under microwave irradiation. The reaction mixture was loaded onto an SCX cartridge and eluted with MeOH followed by NH3 in MeOH (3.5M, 3.5mL), then the basic frations were concentrated in vacuo and purified by preparative HPLC. The product was loaded onto a phosphonic acid SCX cartridge and eluted with MeOH followed by NH3 in MeOH (3.5M, 2.5mL). The basic fractions were
concentrated in vacuo, redisoolved in DCM (lmL) and HCl in 1, 4-dioxane was added. The resulting reaction mixture was stirred at r.t. for 30 min and the solvent removed in vacuo to afford the title compound: RT = 2.43min; mlz (ES+) = 516.13 [M+ H]+.
Example 125: l-{5-[4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l- yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-ethanol
hydrochloride
Figure imgf000276_0001
The title compound was synthesized from [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4- yl)-ethoxy]-pyrimidin-2-yl} -4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester (Preparation 205, 150mg, 0.28mmol) and 2,N-dihydroxy-propionamidine (35mg, 0.34mmol) employing a procedure similar to that outlined in Example 124: RT = 2.48min; mlz (ES+) = 516.5 [M+ H]+.
Example 126: l-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- l-yl]-pyrimidin-5-yloxy -ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-ethanol
Figure imgf000276_0002
To a solution of [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2- yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 206, 50mg, 0.09mmol) and 2,N-dihydroxy-propionamidine (1 lmg, 0.1 lmmol) in EtOH was added molecular sieves (lg) and zinc dichloride in Et20 (0.1 lmL, 0.1 lmmol) and the resulting reaction mixture was stirred at r.t. for 2 h. HCl in 1 ,4-dioxane (4M, 0.1 lmL, 0.46mmol) was added and the reaction mixture heated at 110°C for 30 min under microwave irradiation. The reaction mixture was loaded onto an SCX cartridge and eluted with MeOH followed by NH3 in MeOH (3.5M, 2.4mL), then the basic frations were concentrated in vacuo and purified by preparative HPLC. The product was loaded onto an SCX cartridge and eluted with MeOH followed by NH3 in MeOH (3.5M, 2.4mL). The basic fractions were concentrated in vacuo to afford the title compound: RT = 2.57min; mlz (ES+) = 534.21 [M +
H]+.
Example 127: 2-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-ethanol hydrochloride
Figure imgf000277_0001
The title compound was synthesised from [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4- yl)-ethoxy]-pyrimidin-2-yl} -4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester (Preparation 206, 150mg, 0.28mmol) and 3,N-dihydroxy-propionamidine (34mg, 0.33mmol) employing a procedure similar to that outlined in Example 124: RT = 2.52min; mlz (ES+) = 534.14 [M+ H]+.
Example 128: (R)-l-{5-[4-((5)-l-{2-[(3R,45)-3-Amino-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-ethanol hydrochloride
Figure imgf000277_0002
(R)- 1 - {5-[4-((S 1 - {2-[(3i?,45)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l -yl]- pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-ethanol was isolated from 1 - {5-[4-((S)-l - {2-[(3i?,45)-3-amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l -yl]-pyrimidin-5- yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-ethanol (Example 126, 145mg, 0.272mmol) by chiral HPLC (MTBE:MeOH:THF:BA 60:20:20:0.1, 12mL/min, 250nM). The product (66.8mg, 0.125mmol) was dissolved in DCM (0.5mL), HC1 in Et20 (2M, 80μΕ, 0.160mmol) was added and the resulting reaction mixture was stirred at r.t. for 10 min. The solvent was removed in vacuo to afford the title compound: RT = 0.75 min; mlz (ES+) = 534.40 [M+ ] (LCMS Method-6).
Example 129: (5)-l-{5-[4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-ethanol hydrochloride
Figure imgf000278_0001
The title compound was synthesized froml-{5-[4-((5)-l-{2-[(3i?,45)-3-amino-4- (2,4,5 -trifluoro-phenyl)-pyrrolidin- 1 -yl] -pyrimidin-5 -yloxy } -ethyl)-piperidin- 1 -yl] - [l,2,4]oxadiazol-3-yl}-ethanol (Example 126, 145mg, 0.272mmol) employing the procedure outlined in Example 128: RT = 0.77 min; m/z (ES+) = 534.40 [M+ H]+ (LCMS Method-6).
Example 130: 4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxy}-ethyl)-piperidine-l-sulfonic acid isopropyl-methyl-amide
hydrochloride
Figure imgf000278_0002
To a solution of [(3i?,45)-l-[5-((5)-l-piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-4-(2,4,5- trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185, 75mg, 0.14mmol) in DCE (5mL) was added triethylamine (40μί, 0.29mmol) and methyl(propan-2- yl)sulfamyl chloride (30mg, 0.17 mmol) and the resulting reaction mixture was stirred at r.t. for 16 h. The reaction mixture was diluted with DCM (lOmL) and H20 (lOmL) and the organics separated, concentrated in vacuo and purified by peparative HPLC. The product was dissolved in DCM (2mL), HC1 in Et20 (2M, 72μΙ,, 0.14mmol) was added and the resulting reaction mixture was stirred at r.t. for 30 min. The solvent was removed in vacuo to afford the title compound: RT = 2.87 min; m/z (ES+) = 557.14 [M+ H]+. Example 131: (3R,4S)-4-(2-Fluoro-5-methoxy-phenyl)-l-{5-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-pi eridin-4-ylmethoxy]-pyrimidin-2-yl}-pyrrolidin-3-ylamine
To a solution of (tra/?5)-4-(2-Fluoro-5-methoxy-phenyl)-pyrrolidin-3-ylamine
(Preparation 209, 43mg, 200μηιο1) and 2-choro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy]pyrimidine (Preparation 2, 69mg, 200μηιο1) in MeCN (2mL) was added DIPEA (53μί, 310μηιο1) and the resulting reaction mixture was heated at 170°C for 30 min under microwave irradiation. The solvent was removed in vacuo and the residue was purified by MDP (acidic method). Purification by chiral HPLC (IH : EtOH : THF : B A
50:30:20:0.1, 12mL/min, 250nM, RT = 21.6 min) afforded the title compound: RT = 2.84 min; mlz (ES+) = 512.5 [M+ H]+.
Example 132: (3S,4R)-4-(2-Fluoro-5-methoxy-phenyl)-l-{5-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-pi eridin-4-ylmethoxy]-pyrimidin-2-yl}-pyrrolidin-3-ylamine
Figure imgf000279_0002
To a solution of (tra/?5)-4-(2-Fluoro-5-methoxy-phenyl)-pyrrolidin-3-ylamine
(Preparation 209, 43mg, 200μιηο1) and 2-choro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy]pyrimidine (Preparation 2, 69mg, 200μιηο1) in MeCN (2mL) was added DIPEA (53μΙ^, 310μιηο1) and the resulting reaction mixture was heated at 170°C for 30 min under microwave irradiation. The solvent was removed in vacuo and the residue was purified by MDP (acidic method). Purification by chiral HPLC (IH : EtOH : THF : B A
50:30:20:0.1, 12mL/min, 250nM, RT = 12.8 min) afforded the title compound: RT = 2.70 min; mlz (ES+) = 512.24 [M+ H]+. Example 133: (3S,45)-l-(5-{(S)-l-[l-(3-Ethyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4-(4-ethyl-pyrazol-l-yl)-pyrrolidin-3-ylamine
Figure imgf000279_0003
A solution of 2-chloro-5-{(5)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyrimidine (Preparation 102, 130mg, 380μηιο1), (tra/?s)-4-(4-ethyl-pyrazol-l- yl)-pyrrolidin-3-ylamine (Preparation 214, 34mg, 190μηιο1) and DBU (37μί, 240μηιο1) in DMSO (lmL) were heated at 120°C for 65 min under microwave irradiation. The reaction mixture was diluted with DCM and H20, and the organics separated and concentrated in vacuo. The remainder was purified by preparative HPLC, then loaded onto an SCX cartridge, eluting with MeOH followed by NH3 in MeOH. The basic fractions were concentrated in vacuo and purified by chiral HPLC (MeCN:THF:BA 70:30:0.1, 15mL/min, 250nM, RT = 12.8 min). The crude product was loaded onto an SCX cartridge, eluting with MeOH followed by NH3 in MeOH. The basic fractions were concentrated in vacuo to afford the title compound: RT = 2.65 min; mlz (ES+) = 482.22 [M+ H]+.
Example 134: 2-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-propan-2-ol tosylate
Figure imgf000280_0001
To a solution of [(3i?,45)-l-[5-((5)-l-{l-[3-(l-hydroxy-l-methyl-ethyl)- [l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 217, 0.178g, 0.275mmol) in DCM (4mL) was added TFA (lmL) and the resulting reaction mixture was stirred at r.t. for 90 min. The solvent was removed in vacuo and the remainder was partitioned between DCM (15mL) and saturated aqueous NaHC03 solution (lOmL). The aqueous layer was separated and extracted with DCM (15mL). The combined organic layers were concentrated in vacuo, re-dissolved in DCM (3mL) and TsOH (47mg, 0.25mmol) in MeOH (0.5mL) was added. The solvent was removed in vacuo to afford the title compound: RT = 0.77 min; mlz (ES+) = 548.45 [M+ H]+ (LCMS - Method 6). Example 135 : (3R,4S)-1 -{5- [ l-(3-Isopropyl- [ 1 ,2,4] oxadiazol-5-ylmethyl)-azetidin-3- ylmethoxy]-pyrimidin-2- l}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine
Figure imgf000281_0001
To a solution of [(3R,4S)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-ylmethyl)-azetidin- 3-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester (Preparation 219, 14mg, 23μηιο1) in DCM (lmL) was added TFA (0.2mL) and the resulting reaction mixture was stirred at r.t. for 1 h. The reaction mixture was added to an SCX cartridge and eluted with MeOH followed by NH3 in MeOH (3.5M). The basic fractions were concentrated in vacuo to afford the title compound: RT = 2.15 min; mlz (ES ) = 504.17 [ + H]+.
Example 136: (3S,45)-l-{5-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4- ylmethoxy]-pyrimidin-2- l}-4-(4-methyl-pyrazol-l-yl)-pyrrolidin-3-ylamine
Figure imgf000281_0002
A solution of 2-chloro-5-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- ylmethoxy]pyrimidine (Preparation 53, 0.1 lg, 0.32mmol), (tra/?s)-4-(4-methyl-pyrazol-l- yl)-pyrrolidin-3-ylamine (Preparation 221, 35mg, 0.21mmol) and DBU (40μί, 0.268mmol) in DMSO (1.5mL) were heated at 120°C for 60 min under microwave irradiation. Upon cooling, the reaction mixture was loaded onto a phosphonic acid SCX cartridge and eluted with MeOH, followed by triethylamine in MeOH (3%), followed by NH3 in MeOH (10%). The basic fractions were concentrated in vacuo and purified by chiral HPLC
(MeCN:THF:BA 80:20:0.1, 15mL/min, 250nM, RT = 13.3 min) to afford the title compound: RT = 1.92 min; mlz (ES+) = 468.40 [M+ H]+. Example 137: 4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxy}-ethyl)- iperidine-l-sulfonic acid ethyl-methyl-amide hydrochloride
Figure imgf000282_0001
The title compound was synthesised from [(3R,4S)-l-[5-((S)-l-piperidin-4-yl- ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185, 75mg, 0.14mmol) and ethyl(methyl)sulfamyl chloride (0.027 g, 0.17 mmol) employing a procedure similar to that outlined in Example 30: RT = 2.80 min; m/z (ES+) = 543.12 [ + H]+. Example 138: (3R,45)-4-(2,5-Difluoro-phenyl)-l-[5-((S-l-{l-[3-((S)-l-methoxy-ethyl)- [l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-ylamine hydrochloride
Figure imgf000282_0002
To a solution of [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2- yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 205, 120mg, 0.230mmol) and (5)-N-hydroxy-2-methoxypropionamidine (Preparation 148, 33 mg, 0.27mmol) in EtOH (6mL) was added zinc dichloride in Et20 (1M, 0.27mL, 0.27mmol) and the resulting reaction mixture was stirred at r.t. for 3 h. HC1 in 1 ,4-dioxane (4M,
0.28mL, l . lmmol) was added and the reaction mixture heated at 100°C fo 30 min under microwave irradiation. The reaction mixture was loaded onto an SCX cartridge and eluted with MeOH (3.5mL) followed by NH3 in MeOH (3.5M, 2.5mL) and the basic fractions concentrated in vacuo. The residue was purified by preparative HPLC, then loaded onto an SCX cartridge and eluted with MeOH (3.5mL) followed by NH3 in MeOH (3.5M, 2.5mL) and the basic fractions concentrated in vacuo. The remainder was dissolved in DCM (3mL), HC1 in 1 ,4-dioxane (4M, 0.14mL) was added and the resulting mixture stirred at r.t. for 30 min. Removal of the solvent in vacuo afforded the title compound: RT = 2.72 min; m/z (ES ) = 530.26 [ + H]+.
The following examples were prepared by reaction of the appropriate (l-cyano-piperidin-4- yl-ethoxy)-pyrimidin-2-yl building block with the appropriate amidoxime building block employing a procedure similar to that outlined in Example 138:
Figure imgf000284_0001
Figure imgf000285_0001
Figure imgf000286_0001
Figure imgf000287_0001
Figure imgf000288_0001
Figure imgf000289_0001
Figure imgf000290_0001
Figure imgf000291_0001
Example 168: (3R,4S)-4-(2,5-Difluoro-phenyl)-l-[5-((S)-l-{l-[(S)-3-(tetrahydro-furan-3- yl)-[l,2,4]oxadiazol-5-yl]- iperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-ylamine
Figure imgf000292_0001
To a solution of [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2- yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 205, 240mg, 0.45mmol) and N-hydroxytetrahydrofuran-3-carboxamidine (Preparation 168, 71mg, 0.54mmol) in EtOH (12mL) was added zinc dichloride in Et20 (1M, 0.54mL, 0.54mmol) and the resulting reaction mixture was stirred at r.t. for 3 h. HC1 in 1,4-dioxane (4M, 0.57mL, 2.3mmol) was added and the resulting reaction mixture heated at 100°C for 30 min under microwave irradiation. Upon cooling, the reaction mixture was added to an SCX cartridge and eluted with MeOH (3 x 5mL) followed by NH3 in MeOH (3.5M, 2 x 5mL) and the basic fractions concentrated in vacuo and purified by preparative HPLC. The purified product was added to an SCX cartridge and eluted with MeOH (3 x 5mL) followed by N¾ in MeOH (3.5M, 2 x 5mL) and the basic fractions concentrated in vacuo to afford (3R,4S)-4- (2,5-difluoro-phenyl) -[5-((S)-l-{l-[3-(tetrahydro-furan-3-yl)-[l,2,4]oxadiazol-5-yl]- piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-ylamine. The product was purified by chiral HPLC (MeOH:IH:THF:BA; 50:25:25:0.1, 15ml/min, 250nm), then dissolved in DCM (3mL) and HC1 in 1,4-dioxane (4M, 3mL) was added. The resulting reaction mixture was stirred at r.t. for 30 min, prior to removal of the solvent in vacuo. The residue was purified by preparative HPLC and added to an SCX cartridge, eluting with MeOH followed by N¾ in MeOH (3.5M). The basic fractions were concentrated in vacuo to afford the title compound: RT = 2.60 min; mlz (ES+) = 542.31 [M+ H]+.
Example 169: (3R,45)-4-(2,5-Difluoro-phenyl)-l-[5-((S)-l-{l-[(R)-3-(tetrahydro-furan- 3-yl)- [ 1 ,2,4] oxadiazol-5-yl] -piperidin-4-yl}-ethoxy)-pyrimidin-2-yl] -pyrr olidin-3- ylamine
Figure imgf000292_0002
The title compound was synthesised from [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4- yl)-ethoxy]-pyrimidin-2-yl} -4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester (Preparation 205, 240mg, 0.45mmol) and N-hydroxytetrahydrofuran-3- carboxamidine (Preparation 168, 71mg, 0.54mmol) employing the procedure outlined in Example 168: RT = 2.60 min; mlz (ES+) = 542.32 [M+ H]+.
Example 170: (3R,45)-4-(2,5-Difluoro-phenyl)-l-[5-((S)-l-{l-[(R)-3-(tetrahydro- 2-yl)- [ 1 ,2,4] oxadiazol-5-yl] -piperidin-4-yl}-ethoxy)-pyrimidin-2-yl] -pyrr olidin-3 ylamine
Figure imgf000293_0001
To a solution of [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2- yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 205, 150mg, 0.28mmol) and (i?)-N-hydroxy-tetrahydro-furan-2-carboxamidine (44mg,
0.34mmol) in EtOH (12mL) was added molecular sieves (lg) followed by zinc dichloride in Et20 (1M, 0.34mL, 0.34mmol) and the resulting reaction mixture was stirred at r.t. for 2 h. HC1 in 1,4-dioxane (4M, 0.35mL, 1.4mmol) was added and the reaction mixture heated at 110°C under microwave irradiation for 30 min. The reaction mixture was added to an SCX cartridge and eluted with MeOH (4 x 5mL) followed by NH3 in MeOH (3.5M, 2 x 5mL) and the basic fractions concentrated in vacuo and purified by preparative HPLC. The purified product was added to an SCX cartridge and eluted with MeOH (3 x 5mL) followed by NH3 in MeOH (3.5M, 2 x 5mL) and the basic fractions concentrated in vacuo to afford the title compound: RT = 2.62 min; mlz (ES+) = 542.17 [M+ H]+.
Example 171: (3R,45)-4-(2,5-Difluoro-phenyl)-l-(5-{(S)-l-[l-(5-ethyl-[l,2,4]oxadiazol-3- yl)-piperidin-4-yl]-ethox -pyrimidin-2-yl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000293_0002
To a solution of [(3i?,45)-4-(2,5-difluoro-phenyl)-l-(5-{(5)-l-[l-(N- hydroxycarbamimidoyl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 226, 102mg, 0.181mmol) and propanoic acid (24.2mg, 0.326mmol) in DMF (4mL) was added HOBt (55.5mg, 0.362mmol) and EDCI (69.4mg, 0.362mmol) and the resulting reaction mixture was stirred at r.t. for 1 h, at 80°C for 3 h and at r.t. for 72 h. The reaction mixture was partitioned between DCM and water and the organics separated, concentrated in vacuo and purified by preparative HPLC. The product was dissolved in DCM (2mL), TFA (0.2mL, 2mmol) was added and the reaction mixture stirred at r.t. for 3 h. The reaction mixture was added to a phosphonic acid SCX cartridge and eluted with MeOH (4 x 4mL) followed by NH3 in MeOH (3.5M, 3 x 3mL) and the basic fractions concentrated in vacuo. The remainder was dissolved in DCM and HC1 in 1, 4- dioxane 0.02mmol) was added and the reaction mixture stirred at r.t. for 20 min. The solvent was removed in vacuo, azeotroping with Et20, to afford the title compound: RT = 2.85 min; mlz (ES+) = 500.15 [M+ H]+.
Example 172: (3R,45)-l-(5-{(S)-l-[l-(5-Ethyl-[l,2,4]oxadiazol-3-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4- 2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000294_0001
The title compound was synthesised from [(3i?,45)-l-(5-{(5)-l-[l-(N- hydroxycarbamimidoyl)-piperidin-4-yl]-ethoxy} -pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 227, 105mg, 0.181mmol) employing a procedure similar to that outlined in Example 171: RT = 2.84 min; mlz (ES ) =
Figure imgf000294_0002
Example 173: (3R,45)-4-(2,5-Difluoro-phenyl)-l-(5-{(S)-l-[l-(4-methyl-thiazol-2-yl)- piperidin-4-yl]-ethoxy}-p rimidin-2-yl)-pyrrolidin-3-ylamine
Figure imgf000294_0003
To a solution of [(3i?,45)-4-(2,5-difluoro-phenyl)-l-(5-{(5)-l-[l-(4-methyl-thiazol-2- yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 228, 8mg, ΙΟμιηοΙ) in DCM (2mL) was added TFA (O.lmL, lmmol) and the resulting reaction mixture was stirred at r.t. for 3 h. The reaction mixture was added to an SCX cartridge eluting with MeOH (2 x 4mL) followed by NH3 in MeOH (2 x 4mL) and the basic fractions were concentrated in vacuo to afford the title compound: RT = 2.34 min; mlz (ES+) = 501.23 [Μ+ ηγ. Example 174: (3R,4S)-4-(2,5-Difluoro-phenyl)-l-(5-{(S)-l-[l-(3-ethyl-[l,2,4]thiadiazol- 5-yl)-piperidin-4-yl]-ethox -pyrimidin-2-yl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000295_0001
A solution of {(3i?,45)-4-(2,5-difluoro-phenyl)-l-[5-((5)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 204, 75mg, 0.15mmol) and 5-bromo-3-ethyl-l ,2,4-thiadiazole (170mg, 0.89mmol) was heated at 140°C for 30 min under microwave irradiation. Purification by preparative HPLC afforded
[(3i?,45)-4-(2,5-difluoro-phenyl)- 1 -(5- {(S)- 1 -[ 1 -(3 -ethyl-[ 1 ,2,4]thiadiazol-5-yl)-piperidin-4- yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester. The intermediate was dissolved in DCM (2mL), TFA (0.2mL, 2mmol) was added and the resulting reaction mixture was stirred at r.t. for 3 h. The reaction mixture was added to a phosphonic acid SCX cartridge eluting with MeOH (4 x 4mL) followed by NH3 in MeOH (3.5M, 3 x 3mL) and the basic fractions were concentrated in vacuo. The remainder was dissolved in DCM, HC1 in 1 ,4-dioxane (4M, IQuL, 40μιηο1) was added and the reaction mixture stirred at r.t. for 20 min. Removal of the solvent in vacuo, azeotroping with Et20, afforded the title compound: RT = 2.80 min; m/z (ES+) = 516.13 [M+ H]+.
Example 175: (3R,45)-l-(5-{(S)-l-[l-(3-Ethyl-[l,2,4]thiadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4- 2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000295_0002
The title compound was synthesised from [(3i?,45)-l-[5-((5)-l-piperidin-4-yl- ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185, 170mg, 0.86mmol) employing a procedure similar to that outlined in Example 174: RT = 2.75 min; m/z (ES+) = 534.10 [M+ H]+. Example 176: (3R,4S)-4-(2,5-Difluoro-phenyl)-l-(5-{(S)-l-[l-(2-ethyl-2H-tetrazol-5-yl)- piperidin-4-yl]-ethoxy}-pyrimidin-2- l)-pyrrolidin-3-ylamine dihydrochloride
Figure imgf000296_0001
To a solution of [(3i?,45)-4-(2,5-difluoro-phenyl)-l-(5-{(5)-l-[l-(3-ethyl-lH-tetrazol- 5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 230, 40mg, 0.07mmol) in DCM (5mL) was added TFA (0.5mL) and the resulting reaction mixture was stirred at r.t. for 3 h. The reaction mixture was added to an SCX cartridge eluting with MeOH (3 x 4mL) followed by NH3 in MeOH (3.5M, 3 x 4mL) and the basic fractions were concentrated in vacuo. The remainder was dissolved in DCM (3mL), HC1 in Et20 (2M, 80μί, 0.2mmol) was added and the reaction stirred at r.t for 20 min. Removal of the solvent in vacuo afforded the title compound: RT = 2.77 min; m/z (ES )
Figure imgf000296_0002
Example 177: (3R,45)-l-(5-{(S)-l-[l-(2-Ethyl-2H-tetrazol-5-yl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifl ro-phenyl)-pyrrolidin-3-ylamine dihydrochloride
Figure imgf000296_0003
The title compound was synthesised from [(3i?,45)-l-(5-{(5)-l-[l-(2-Ethyl-2H- tetrazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- 3-yl]-carbamic acid tert-butyl ester (Preparation 232, 30mg, 0.05mmol) employing a procedure similar to that outlined in Example 176: RT = 2.75 min; m/z (ES+) = 518.12 [M+ H]+.
Example 178: (3R,45)-l-(5-{(S)-l-[l-(Propane-l-sulfonyl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifluoro- henyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000296_0004
To a solution of [(3i?,45)-l-[5-((5)-l-piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-4-(2,4,5- trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185, 75mg, 0.14mmol) and triethylamine 40μί, 0.29mmol) in DCM (4mL) was added n-propyl sulfonyl chloride (24mg, 0.17mmol) and the resulting reaction mixture was stirred at r.t. for 16 h. The reaction mixture was partitioned between DCM (lOmL) and water (8mL) and the organics separated and concentrated in vacuo. Purification by preparative HPLC afforded [(3R,4S)-l- (5- {(S)- 1 -[ 1 -(propane- 1 -sulfonyl)-piperidin-4-yl]-ethoxy} -pyrimidin-2-yl)-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester. The product was dissolved in DCM (2mL), TFA (0.2mL, 2.0mmol) was added and the resulting reaction mixture was stirred at r.t. for 3 h. The reaction mixture was added to an SCX cartridge eluting with MeOH (3 x 4mL) followed by NH3 in MeOH (3.5M, 3 x 3mL) and the basic fractions were concentrated in vacuo. The remainder was dissolved in DCM (2mL) and HC1 in 1,4-dioxane (25μί, O.lOmmol) was added. The reaction mixture was stirred at r.t for 20 min and the solvent removed in vacuo to afford the title compound: RT = 2.75 min; m/z (ES ) = 528.11 [M+ H]+.
The following examples were prepared by reacting [(3i?,45)-l-[5-((5)-l-piperidin-4- yl-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester (Preparation 185) with the appropriate sulfonyl chloride building block employing a procedure similar to that outlined in Example 178:
Figure imgf000298_0001
Figure imgf000299_0001
Example 186: (3R,4S)-l-(5-{(S)-l-[l-((R)-Butane-2-sulfonyl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifl ro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000300_0001
(3R,4S)-1 -(5- {(S)- 1 -[ 1 -(Butane-2-sulfonyl)-piperidin-4-yl]-ethoxy} -pyrimidin-2-yl)- 4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine was syntheised from [(3i?,4»S)- 1 - [5 -((JS - 1 - piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-frifluoro-phenyl)-pyrrolidin-3- acid tert-butyl ester (Preparation 185, 75mg, 0.14mmol) and sec-butylsulfonyl chloride (27mg, 0.17 mmol) employing a procedure similar to that outlined in Example 178. The product was purified by chiral HPLC (MeOH:THF:BA; 75:25:0.1, 13ml/min, 250nm), then added to an SCX cartridge eluting with MeOH (3 x 4mL) followed by NH3 in MeOH (3.5M, 3 x 3mL) and the basic fractions were concentrated in vacuo. The remainder was dissolved in DCM (2mL) and HC1 in 1,4-dioxane (4M, ΙΟμί, 40μιηο1) was added. The reaction was stirred at r.t. for 20 min, the solvent removed in vacuo and the remainder added to a phosphonic acid SCX cartridge, eluting with MeOH (3 x 3mL) followed by N¾ in MeOH (3.5M, 3 x 3mL). The methanolic fractions were concentrated in vacuo to afford the title compound: RT = 2.92 min; mlz (ES+) = 542.13 [M+ H]+.
Example 187: (3R,45)-l-(5-{(S)-l-[l-((S)-Butane-2-sulfonyl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine
Figure imgf000300_0002
The title compound was syntheised from [(3 ?,45)-l-[5-((5)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185, 75mg, 0.14mmol) and sec-butylsulfonyl chloride (27mg, 0.17 mmol) employing the procedure outlined in Example 186: RT = 2.90 min; mlz (ES ) = 542.13 [M + H]+. Example 188: (3R,4S)-l-(5-{(S)-l-[l-((R)-Pentane-2-sulfonyl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifluoro- henyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000301_0001
(3i?,45)-l-(5-{(5)-l-[l-(Pentane-2-sulfonyl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-y^^ 4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine was syntheised from [(3i?,4»S)- 1 - [5 -((JS - 1 - piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-frifluoro-phenyl)-pyrrolidin-3- acid tert-butyl ester (Preparation 185, 75mg, 0.14mmol) and 2-pentyl sulfonyl chloride (0.029 g, 0.17 mmol) employing a procedure similar to that outlined in Example 178. The product was purified by chiral HPLC (MeOH:THF:BA; 75:25:0.1, 13ml/min, 250nm), then added to an SCX cartridge eluting with MeOH (3 x 4mL) followed by NH3 in MeOH (3.5M, 3 x 3mL) and the basic fractions were concentrated in vacuo. The remainder was dissolved in DCM (2mL) and HC1 in 1,4-dioxane (4M, ΙΟμί, 40μιηο1) was added. The reaction mixture was stirred at r.t. for 20 min, the solvent removed in vacuo and the remainder added to a phosphonic acid SCX cartridge, eluting with MeOH (3 x 3mL) followed by N¾ in MeOH (3.5M, 3 x 3mL). The methanolic fractions were concentrated in vacuo to afford the title compound: RT = 2.97 min; mlz (ES+) = 556.16 [M+ H]+.
Example 189: (3R,45)-l-(5-{(S)-l-[l-((S)-Pentane-2-sulfonyl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifl ro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000301_0002
The title compound was syntheised from [(3 ?,45)-l-[5-((5)-l-piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185, 75mg, 0.14mmol) and 2-pentyl sulfonyl chloride (0.029 g, 0.17 mmol) employing the procedure outlined in Example 188: RT = 3.05 min; m/z (ES+) = 556.15 [M + H]+. Example 190: (3R,4S)-l-[5-((S)-l-{l-[(S)-(Tetrahydro-furan-3-yl)sulfonyl]-piperidin-4- yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine
hydrochloride
Figure imgf000302_0001
(3i?,45)-l-(5-{(5)-l-[l -(Tetrahydro-furan-3-sulfonyl)-piperidin-4-yl]-ethoxy}- pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine was syntheised from
[(3i?,45)-l-[5-((5)-l -piperidin-4-yl-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-frifluoro-phenyl^ pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185, 75mg, 0.14mmol) and tetrahydrofuran-3-sulfonyl chloride (29mg, 0.17 mmol) employing a procedure similar to that outlined in Example 178. The product was purified by chiral HPLC
(MTBE : MeCN : : THF : B A; 40:30:30:0.1 , 14ml/min, 250nm), then added to an SCX cartridge eluting with MeOH (3 x 4mL) followed by NH3 in MeOH (3.5M, 3 x 3mL) and the basic fractions were concentrated in vacuo. The remainder was dissolved in DCM (2mL) and HCl in 1 ,4-dioxane (4M, 10uL, 40μιηο1) was added. The reaction was stirred at r.t. for 20 min, the solvent removed in vacuo and the remainder added to a phosphonic acid SCX cartridge, eluting with MeOH (3 x 3mL) followed by NH3 in MeOH (3.5M, 3 x 3mL). The methanolic fractions were concentrated in vacuo to afford the title compound: RT = 2.67 min; m/z (ES ) = 556.1 1 [M + H]+. Example 191: (3R,45)-l-[5-((S)-l-{l-[(R)-(Tetrahydro-furan-3-yl)sulfonyl]-piperidin-4- yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine
hydrochloride
Figure imgf000302_0002
The title compound was syntheised from [(3R,4S)-l-[5-((S)-l -piperidin-4-yl-ethoxy)- pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 185, 75mg, 0.14mmol) and tetrahydrofuran-3-sulfonyl chloride (29mg, 0.17 mmol) employing the procedure outlined in Example 190: RT = 2.68 min; m/z (ES ) = 556.12 [M + H]+. Example 192 : (3R,4S)-1 -{5- [ l-(6-Ethyl-pyridazin-3-yl)-piperidin-4-ylmethoxy] - pyrimidin-2-yl}-4-(2,4,5-trifl ro-phenyl)-pyrrolidin-3-ylamine
Figure imgf000303_0001
To a solution of [(3i?,45)-l-{5-[l-(6-Ethyl-pyridazin-3-yl)-piperidin-4-ylmethoxy]- pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 234, 22mg, 36μΙ.) in DCM (2mL) was added TFA (0.2mL, 2mmol) and the resulting reaction mixture was stirred at r.t. for 16 h. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (3.5M) and the basic fractions concentrated in vacuo to afford the title compound: RT = 2.18 min; m/z (ES ) =
Figure imgf000303_0002
Example 193: (3R,45)-l-{5-[(S)-l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-3- ylmethoxy]-pyrimidin-2-yl}-4- 2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine
Figure imgf000303_0003
The title compound was isolated from (3i?,45)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)piperidin-3-ylmethoxy]pyrimidin-2-yl}-4-(2,4,5-trifluorophenyl)pyrrolidin-3-ylamine (Example 46) via chiral HPLC (MTBE:MeOH:BA; 80:20:0.1, 13ml/min, 250nm, RT = 15.7 min): RT = 2.75 min; m/z (ES+) = 518.25 [M+ H]+. The stereochemistry of * centre has been arbitrarily assigned.
Example 194 : (3R,45)-1 -{5- [ l-(3-Isopr opyl- [ 1 ,2,4] oxadiazol-5-yl)-piperidin-4- ylmethoxy]-pyrimidin-2- l}-4-phenyl-pyrrolidin-3-ylamine
Figure imgf000303_0004
To a solution of (trans)-4-phenyl-pyrrolidin-3-yl-ammonium (Preparation 237, 50mg, 0.3mmol) in MeCN (2mL) was added 2-chloro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy]pyrimidine (Preparation 2, 83mg, 0.25mmol) followed by DIPEA (64μΙ^, 0.37mmol) and the resulting reaction mixture was heated at 170°C for 30min under microwave irradiation. The solvent was removed in vacuo and the remainder purified by preparative HPLC. The crude product was loaded onto an SCX cartridge eluting with MeOH, followed by NH3 in MeOH (3.5M) and the basic fractions concentrated in vacuo. Purification by chiral HPLC (MTBE :MeOH:THF :BA; 65:30:5:0.1, 13ml/min, 250nm, RT = 17.0 min), afforded the title compound: RT = 2.68 min; mlz (ES+) = 464.26 [M+ H]+.
Example 195: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-yl]-ethoxy}-pyridin-2-yl)-pyrrolidin-3-yl]-5,5-difluoro-piperidin-2-one hydrochloride
Figure imgf000304_0001
2-Bromo-5-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyridine (Preparation 94, 50mg, O.lmmol), [(3S,4S)-4-(5,5-difluoro-2- oxopiperidin-l-yl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 93, 48mg,
0.15mmol), sodium tertiary butoxide (42mg, 0.44mmol) and 2,5,8,9-tetraaza-2,8,9-trimethyl- l-phosphabicyclo[3.3.3]undecane (2.7mg, 13μιηο1) were dissolved in 1,4-dioxane (2mL) and the resulting reaction mixture was degassed with argon for 10 min.
Tris(dibenzylideneacetone)dipalladium (12mg, 13μιηο1) was added and the reaction mixture was degassed with argon for a further 10 min. The reaction mixture was heated at 120°C for 60 min under microwave irradiation prior to filtration through celite. The filtrate was concentrated in vacuo, dissolved in DCM (5mL) and TFA (ImL) was added. The resulting reaction mixture was stirred at r.t. for 30 min, further TFA (ImL) was added and the reaction mixture stirred at r.t. for a further 20 min. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M) and the basic fractions concentrated in vacuo. The remainder was loaded onto a phosphonic acid SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M) and the basic fractions concentrated in vacuo. The remainder was purified by column chromatography (DCM:MeOH, 95:5), dissolved in Et20, and HC1 in 1,4-dioxane (5 drops) added. The solvent was removed in vacuo and the remainder purified by chiral HPLC (MTBE : THF : MeOH : B A; 55 :25 :20:0.1 , 12ml/min, 250nm, RT = 12.9 min) to afford the title compound: RT = 2.45 min; mlz (ES ) = 534.27 [M+ H]+.
Example 196: (3R,4S)-l-(5-{(S)-l-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrazin-2-yl)-4- 2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000305_0001
The title compound was synthesized from 2-bromo-5-{(5)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethoxy}pyrazine (Preparation 95, 300mg, 0.8mmol), and [(3i?,45)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester
(Preparation 39, 290mg, 0.91mmol) employing a procedure similar to that outlined in
Example 119: RT = 2.92 min; mlz (ES+) = 532.53 [M+ H]+.
Example 197: (3R,45)-l-(2-{(S)-l-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-5-yl)-4- 2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000305_0002
A solution of 5-Bromo-2-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4- yl]-ethoxy}-pyrimidine (Preparation 238, 177mg, 0.447mmol), [(3R,4S)-4-(2,4,5- trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 170mg, 0.54mmol), sodium tertiary butoxide (52mg, 0.54mmol) and 2-(di-t- butylphosphino)biphenyl (27mg, 89μmol) in toluene was degassed with argon for 10 min. Tris(dibenzylideneacetone)dipalladium(0) (20mg, 22μιηο1) was added and the reaction mixture was degassed with argon for a further 10 min and heated at 75°C for 96 h. The reaction mixture was filtered through celite, the filtrate concentrated in vacuo and the remainder purified by preparative HPLC. The product was dissolved in DCM (5mL) and TFA (lmL) added. The reaction mixture was stirred at r.t. for 30 min, further TFA (lmL) was added and stirring at r.t. continued for 20 min. The reaction mixture was loaded onto an SCX cartridge and eluted with MeOH followed by NH3 in MeOH (7M) and the basic fractions concentrated in vacuo. The remainder was dissolved in Et20 and HC1 in 1,4- dioxane (4M, 5 drops) added. The solvent was removed in vacuo to afford the title compound: RT = 2.82 min; mlz (ES+) = 532.51 [M+ H]+.
Example 198: (3R,45)-l-(5-{(S)-l-[l-(3-Ethyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4- 4-methyl-pyridin-2-yl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000306_0001
2-Chloro-5-{(5)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyrimidine (Preparation 102, 30.4mg, 90μmol), [(3i?,4S)-4-(4-methyl-pyridin-2- yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 243, 31.3mg, 113μιηο1) and DBU (13.7mg, 90μιηο1) in DMSO (lmL) were heated in a sealed tube at 80°C for 96 h.
Upon cooling, the reaction mixture was diluted with DCM (50mL), washed with brine (3 x 50mL) and concentrated in vacuo. The remainder was purified by column chromatography (DCM:MeOH; 97.5:2.5) to afford [(tra/75)-l-(5-{(5)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-yl]-ethoxy} -pyrimidin-2-yl)-4-(4-methyl-pyridin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester. The intermediate was dissolved in DCM (5mL), TFA (lmL) was added and the resulting reaction mixture was stirred at r.t for 20 min. Further TFA (lmL) was added and the reaction mixture stirred at r.t. for 20 min. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M). The basic farctions were concentrated in vacuo, dissolved in Et20 (2mL) and HC1 in Et20 (5 drops) was added. The solvent was removed in vacuo to afford the title compound: RT = 0.70 min; mlz (ES+) = 479.50 [M+ H]+ (LCMS - Method 6).
Example 199: (3R,4S)-4-(2,5-Difluoro-phenyl)-l-(6-{(S)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyridin-3-yl)-pyrrolidin-3-ylamine dihydrochloride
Figure imgf000306_0002
To [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 78.9mg, 0.264mmol), 5-bromo-2-{(S)-l-[l-(3-isopropyl-[l,2,4]oxadiazol- 5 -yl)-piperidin-4-yl]-ethoxy} -pyridine (Preparation 244, 87.1mg, 0.220mmol), sodium tertiary butoxide (25.4mg, 0.264mmol) and biphenyl-2-yl(di-tert-butyl)phosphine (13.2mg, 44.1 μηιο1) in a sealed tube was added toluene (2mL, 20mmol). The reaction mixture was degassed with argon for 15 min prior to the addition of bis(dibenzylideneacetone)palladium (lO.lmg, 11.ΟμιηοΙ). The reaction mixture was degassed for a further 5 min and heated at 80°C for 40 h. Upon cooling, the reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M). The fractions were concentrated in vacuo, dissolved in DCM (8mL) and TFA (2mL) was added. The resulting reaction mixture was stirred at r.t. for 1 h. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M). The basic fractions were concentrated in vacuo and the remainder purified by column chromatography (DCM:MeOH; 98:2). The product was dissolved in Et20 (2mL) and HC1 in 1, 4-dioxane (0.2mL) was added. Removal of the solvent in vacuo afforded the title compound: RT = 2.80 min; mlz (ES+) = 513.3 [M+ H]+.
Example 200: (3R,45)-4-(2,5-Difluoro-phenyl)-l-(6-{(5)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-4-methyl-pyridin-3-yl)-pyrrolidin-3- ylamine dihydrochloride
Figure imgf000307_0001
The title compound was synthesised from [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin- 3-yl]carbamic acid tert-butyl ester (Preparation 48, 71.6mg, 0.24mmol)), and 5-bromo-2- {(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-4-methyl-pyridine (Preparation 245, 81.9mg, 0.20mmol) employing a procedure similar to that outlined in Example 199: RT = 2.65 min; mlz (ES+) = 527.3 [M+ H]+.
Example 201: (3R,45)-4-(2,5-Difluoro-phenyl)-l-(2-{(S)-l-[l-(3-isopropyl-
[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-5-yl)-pyrrolidin-3-ylamine dihydrochloride
Figure imgf000307_0002
The title compound was synthesised from 5-bromo-2-{(5)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidine (Preparation 238, HOmg, 0.28mmol) and [(3i?,45)-4-(2,5-difluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 48, 99.4mg, 0.333mmol) employing a procedure similar to that outlined in Example 197: RT = 2.79 min; mlz (ES+) = 514.6 [M+ H]+. Example 202: (3R,4R)-4-(2,5-Difluoro-phenyl)-l-(5-{(5)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5- yl)-piperidin-4-yl]-ethox -pyrimidin-2-yl)-piperidin-3-ylamine hydrochloride
Figure imgf000308_0001
The title compound was synthesised from [(3i?,4i?)-4-(2,5-difluoro-phenyl)-l-(5- {(5)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-piperidin- 3-yl]-carbamic acid tert-butyl ester (Preparation 246, 85.0mg, 0.138mmol) employing a procedure similar to that outlined in Example 176: RT = 0.83 min; mlz (ES+) = 514.4 [M + H]+ (LCMS Method - 6).
Example 203: (3R,45)-l-(5-{(S)-l-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4- 4-methyl-pyridin-2-yl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000308_0002
A solution of [(3i?,45)-l-(5-{(5)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin- 4-yl]-ethoxy} -pyrimidin-2-yl)-4-(4-methyl-pyridin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert butyl ester (Preparation 247, 50mg, 84μιηο1) in HC1 in 1,4-dioxane (4M, 5mL, 20mmol) was stirred at r.t. for 16 h. The solvent was removed in vacuo, azeotroping with DCM (2 x) and Et20 (2 x) to afford the title compound: RT = 2.52 min; mlz (ES+) = 493.32 [M+ H]+.
Example 204: (3R,45)-4-(2,5-Difluoro-phenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)-piperidin-4-ylmethoxy]-6-methyl-pyridin-2-yl}-pyrrolidin-3-ylamine
dihydrochloride
Figure imgf000308_0003
A solution of ((3i?,45)-4-(2,5-difluoro-phenyl)-l-{5-[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)-piperidin-4-ylmethoxy]-6-methyl-pyridin-2-yl} -pyrrolidin-3-yl)-carbamic acid tert- butyl ester (Preparation 249, 40.0mg, 65.3μηιηιο1) in HC1 in 1,4-Dioxane (4M, lO.OmL, 40.0mmol) was stirred at r.t. for 2 h. The solvent was removed in vacuo and the remainder triturated with Et20 to afford the title compound: RT = 2.59 min; m/z (ES+) = 513.53 [M + H]+.
Example 205: (3R,45)-4-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxymeth l}-l-(5-chloro-pyrimidin-2-yl)-piperidin-3-ol
Figure imgf000309_0001
To a solution of [(3i?,45)-l-{5-[(3i?,45)-l-(5-chloro-pyrimidin-2-yl)-3-hydroxy- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 259, 55mg, 89μmol) in DCM (8mL) was added TFA (1.5mL) dropwise at 0°C. The resulting reaction mixture was stirred at r.t. for 2 h, then loaded onto an SCX cartridge eluting with MeOH, followed by NH3 in MeOH (10%). The basic fractions were concentrated in vacuo to afford the title compound: RT = 2.68 min; m/z
Figure imgf000309_0002
Example 206: (3S,4R)-4-{2-[(3R,45)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxymeth l}-l-(5-chloro-pyrimidin-2-yl)-piperidin-3-ol
Figure imgf000309_0003
The title compound was synthesized from [(3i?,45)-l-{5-[(3S,4R)-l-(5-chloro- pyrimidin-2-yl)-3-hydroxy-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)- pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 260, 54mg, 87μιηο1) employing a procedure similar to that outlined in Example 205: RT = 2.70 min; m/z (ES ) = 518.21 [M + H]+.
Example 207: (3R,4S)-l-{5-[(3S,4R)-l-(5-Chloro-pyrimidin-2-yl)-3-methoxy-piperidin- 4-ylmethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-ylamine
Figure imgf000310_0001
To a solution of (3lS,4i?)-4-{2-[(3i?,45)-3-amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l- yl]-pyrimidin-5-yloxymethyl}-l-(5-chloro-pyrimidin-2-yl)-piperidin-3-ol (Example 206, 62mg, O. lOmmol) in THF (lmL) was added NaH (60% dispersion in mineral oil, 6.0mg, 0.15mmol) and the resulting reaction mixture was stirred at r.t. for 10 min. Methyl iodide (50μί, 0.80mmol) was added and the reaction mixture stirred at r.t for 16 h. Further sodium hydride (60% dispersion in mineral oil, 6.0mg, 0.15mmol) and methyl iodide (50μί, 0.80mmol) were added and the reaction mixture stirred at r.t. for 2 h. Water was added cautiously to the reaction mixture and the product extracted into EtOAc (3 x). The combined organic extracts were wahed with brine, dried (MgS04), filtered and concentrated in vacuo. Purification by preparative HPLC afforded [(3 ?,45)-l-{5-[(35',4i?)-l-(5-chloro-pyrimidin-2- yl)-3-methoxy-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3- yl]-carbamic acid tert-butyl ester. The product was dissolved in DCM (5.0mL), cooled to 0°C and TFA (0.5mL) was added dropwise. The resulting reaction mixture was stirred at r.t. for 2 h, then loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (10%). The basic fractions were concentrated in vacuo and triturated with IH:Et20 (9: 1) to afford the title compound: RT = 2.98 min; mlz (ES+) = 532.15 [M+ H]+.
The following examples were prepared by reaction of the appropriate 4-{2-[(3R,4S)- 3-amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxymethyl}-l-(5-chloro- pyrimidin-2-yl)-piperidin-3-ol building block (Example 205 or Preparation 261 or
Preparation 262) with methyl iodide employing a procedure similar to that outlined in
Example 207:
Figure imgf000311_0001
Example 211: (3R,4S)-1 -{5- [(3R,4S)- l-(3-Isopropyl- [ 1 ,2,4] oxadiazol-5-yl)-3-methoxy- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000312_0001
To a solution of [(3R,4S)-l-{5-[(3R,4S)-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-3- methoxy-piperidin-4-ylmethoxy]-pyri^
yl]-carbamic acid tert-butyl ester (Preparation 270, 28mg, 0.043mmol) in DCM (5mL) was added TFA (1.OmL) and the resulting reaction mixture stirred at r.t. for 2 h. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (10%) and the basic fraction concentrated in vacuo. The remainder was dissolved in DCM (lmL) and HC1 in Et20 (2mL) was added and the reaction mixture stirred for 5 min. The solvent was removed in vacuo to afford the title compound: RT = 0.85 min; mlz (ES+) = 548.49 [M+ H]+ (LCMS Method-6). Example 212: (3R,45)-l-{5-[(3S,4R)-l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-3-methoxy- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000312_0002
The title compound was synthesized from [(3R,4S)-l-{5-[(3S,4R)-l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-3-methoxy-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5- trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 271, 30mg, 0.046mmol) employing a procedure similar to that outlined in Example 211: RT = 0.83 min; mlz (ES+) = 548.53 [M+ H]+ (LCMS Method-6). Example 213: (3R,4S)-l-(5-{(S)-l-[l-(3-Ethyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4-(2-fluoro-5-fluorometh l-phenyl)-pyrrolidin-3-ylamine
Figure imgf000313_0001
To a solution of [(3 ?,45)-4-(2-fluoro-5-fluoromethyl-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-butyl ester (Preparation 278, lO.lmg, 32.3 μί) and 2-chloro-5-{(5)-l-[l- (3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethoxy}pyrimidine (Preparation 102, 10.9mg, 32.3μηιο1) in DMSO (0.2mL) in a sealed tube was added DBU (5uL, 32.3mmol) and the resulting reaction mixture was stirred at 80°C for 84 h. The reaction mixture was poured into water (25mL) and extracted with EtOAc (3 x 40mL). The combined organic extracts were washed with brine, dried (MgS04), filtered and concentrated in vacuo. Purifictaion by column chromatography (DCM:MeOH; 99: 1 to 97: 1) afforded [(3R,4S)-l-(5-{(S)-l-[l-(3- ethyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-4-(2-fluoro-5- fluoromethyl-phenyl)-pyrrolidin-3-yl] -carbamic acid fert-butyl ester. The product was dissolved in 1,4-dioxane (ImL), cooled to 0°C and HCl in 1,4-dioxane was added (4M, ImL). The resulting reaction mixture was stirred at 0°C for 1 h, prior to the addition of further HCl in 1,4-dioxane (4M, ImL). After stirring at r.t. for 4 h, the reaction mixture was concentrated in vacuo, the remainder dissolved in DCM (50mL) and washed with saturated aqueous Na2C03 solution (50mL), dried (MgS04), filtered and concentrated in vacuo.
Purification by column chromatography (DCM:MeOH; 97:3) afforded the title compound: RT = 0.82 min; mlz (ES+) = 514.48 [M+ H]+ (LCMS Method-6).
Example 214: (3R,4S)-4-(2,4-Difluoro-5-methyl-phenyl)-l-(5-{(5)-l-[l-(3-ethyl-
[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000313_0002
To a solution of 2-chloro-5-{(5)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethoxy}pyrimidine (Preparation 102, lOOmg, 0.3mmol) in DMSO (2mL) was added [(3i?,45)-4-(2,4-difluoro-5-methyl-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 292, 0.139g, 0.444mmol) and DBU (44.3 μ, 0.296mmol) and the resulting reaction mixture was stirred at 85°C for 89 h. Upon cooling, the reaction mixture was partitioned between EtOAc (50mL) and water (30mL) and the organic layer was separated, washed with brine (30mL) and concentrated in vacuo. The reminder was purified by preparative HPLC to afford [(5R,4S)-4-(2,4-difluoro-5-methyl-phenyl)-l-(5-{(S)-l-[l-(3- ethyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]- carbamic acid tert-butyl ester. The compound was dissolved in DCM (5mL), TFA (500μί, 6mmol) was added and the resulting reaction mixture was stirred at r.t. for 3 h. The solvent was removed in vacuo and the remainder purified by preparative HPLC. The product was loaded onto an SCX cartridge in MeOH and eluted with MeOH, followed by NH3 in MeOH (2M). The basic fractions were concentrated in vacuo, the remainder dissolved in DCM and HC1 in 1,4-dioxane (ΙΟΟμί) was added. The solvent was removed in vacuo, azeotroping with MeOH (2 x 2mL) to afford the title compound: RT = 0.83 min; mlz (ES+) = 514.49 [M + H]+ (LCMS Method-6). Example 215: (3R,45)-l-(5-{(S)-l-[(3R,4S)-l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-3- methoxy-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- 3-ylamine hydrochloride
Figure imgf000314_0001
To a solution of 2-chloro-5-{(5)-l-[(cz5)-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-3- methoxy-piperidin-4-yl]-ethoxy}-pyrimidine (Preparation 298, 50mg, O. lmmol) and
[(3i?,45)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 62.1mg, 0.196mmol) in DMSO (lmL) was added DBU (19.6μί, 0.131mmol) and the resulting reaction mixture was heated at 85°C for 89 h. Upon cooling, the reaction mixture was partitioned between EtOAc (50mL) and water (30mL) and the organic layer was separated, washed with brine (30mL) and concentrated in vacuo. Purification by preparative HPLC afforded [(3R,4S)- 1 -(5- {(S)-l -[(cis)- 1 -(3-isopropyl-[ 1 ,2,4]oxadiazol-5-yl)-3-methoxy- piperidin-4-yl]-ethoxy} -pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester. Purification by chiral HPLC (MTBE:MeOH; 90:10, 15ml/min, 250nm) afforded [(3R,4S)- 1 -(5- {(S)- 1 -[(3R,4S)- 1 -(3-isopropyl-[ 1 ,2,4]oxadiazol-5-yl)-3-methoxy- piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyiTolidin-3-yl]-carbamic acid tert-butyl ester. The product was dissolved in DCM (lmL) and HC1 in 1,4-dioxane (4M, ΙΟΟμί) was added. The reaction mixture was allowed to stand at r.t. for 3 h and the solvent removed in vacuo, azeotroping from MeOH (3 x 1 mL), to afford the title compound: RT = 0.84 min; mlz (ES+) = 562.50 [M + H]+ (LCMS Method-6). Example 216: (3R,45)-l-(5-{(S)-l-[(3S,4R)-l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-3- methoxy-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- 3-ylamine hydrochlorid
Figure imgf000315_0001
The title compound was prepared from 2-chloro-5- {(5)-l -[(cz's)-l-(3-isopropyl- [l ,2,4]oxadiazol-5-yl)-3-methoxy-piperidin-4-yl]-ethoxy}-pyrimidine (Preparation 298, 50mg, O. lmmol) and [(3 ?,45)-4-(2,4,5-trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert- butyl ester (Preparation 39) employing the procedure outlined in Example 215: RT = 0.83 min; mlz (ES+) = 562.51 [M + H]+ (LCMS Method-6).
Example 217: (3R,45)-1 -{5- [ l-(3-Ethyl- [ 1 ,2,4] oxadiazol-5-yl)-4-methoxy-piperidin ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine
hydrochloride
Figure imgf000315_0002
To a solution of 2-chloro-5-[l -(3-ethyl-[l ,2,4]oxadiazol-5-yl)-4-methoxy-piperidin- 4-ylmethoxy]-pyrimidine (Preparation 303, 0.103g, 0.29mmol) and [(3R,4S)-4-(2,4,5- trifluorophenyl)pyrrolidin-3-yl]carbamic acid tert-butyl ester (Preparation 39, 0.138g, 0.435mmol) in DMSO (2mL) was added DBU (48μί, 0.319mmol). The resulting reaction mixture was heated to 85°C and stirred for 19 h. Upon cooling, the reaction mixture was partitioned between EtOAc (20mL) and water (lOmL), then the organic layer separated, washed with brine and concentrated in vacuo. The remainder was purified by preparative
HPLC, then dissolved in 1 ,4-dioxane (2mL) prior to the addition of HC1 in 1 ,4-dioxane (4M, 2mL, 8mmol). The reaction mixture was stirred at r.t. for 4 h and the solvent removed in vacuo. The remainder was purified by preparative HPLC and the crude product partitioned between DCM (20mL) and saturated aqueous NaHC03 solution (lOmL). The organic layer was separated, concentrated in vacuo and the remainder dissolved in DCM (lmL) prior to the addition of HC1 in 1,4-dioxane (4M, ΙΟΟμί). The solvent was removed in vacuo, azeotroping with MeOH (2 x 2mL), to afford the title compound: RT = 0.77 min; mlz (ES ) = 534.50 [M+ H]+ (LCMS Method-6).
Example 218: (3R,45)-1 -{5- [ l-(3-Ethyl- [ 1 ,2,4] oxadiazol-5-yl)-4-fluoro-piperidin-4- ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine
hydrochloride
Figure imgf000316_0001
The title compound was synthesized from 2-chloro-5-[l-(3-ethyl-[l,2,4]oxadiazol-5- yl)-4-fluoro-piperidin-4-ylmethoxy]-pyrimidine (Preparation 306, 0.137g, 0.401mmol) employing a procedure similar to that outlined in Example 217: RT = 0.79 min; mlz (ES ) = 522.48 [M+ H]+ (LCMS Method-6).
Example 219: (3R,45)-4-(2,5-Difluoro-phenyl)-l- {6- [1 -(3-isopr opyl- [ 1 ,2,4] oxadiazol-5- yl)-piperidin-4-ylmethox ]-pyridin-3-yl}-pyrrolidin-3-ylamine
Figure imgf000316_0002
The title compound was synthesized from ((3S,4R)-4-(2,5-difluoro-phenyl)-l-{6-[l- (3-isopropyl-[ 1 ,2,4]oxadiazol-5-yl)-piperidin-4-ylmethoxy]-pyridin-3-yl} -pyrrolidin-3-yl)- carbamic acid tert-butyl ester (Preparation 308, 60mg, O.lmmol) employing a procedure similar to that outlined in Example 205: RT = 2.80 min; mlz (ES+) = 499.31 [M+ H]+.
Example 220: 2-[(3R,45)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]-5-{(S)-l-[l- (3-ethyl-[l,2,4]oxadiazol-5- l)-piperidin-4-yl]-ethoxy}-pyrimidine-4-carbonitrile
Figure imgf000316_0003
To a solution of [(3i?,45)-l-(4-cyano-5-hydroxy-pyrimidin-2-yl)-4-(2,5-difluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 314, 20.0mg,
47.9μηιο1) and methanesulfonic acid (i?)-l-[l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin-4- yl]ethyl ester (Preparation 101, 17.4mg, 57.5μmol) in DMF (3mL) was added potassium carbonate (18.7mg, 0.12mmol) and the resulting reaction mixture was heated at 90°C for 66 h. Upon cooling, the reaction mixture was partitioned between H20 (20mL) and EtOAc
(50mL). The layers were separated and the aqueous extracted with EtOAc (2 x 20mL). The combined organic extracts were washed with brine (50mL), dried (MgS04), filtered and concentrated in vacuo. The remainder was purified by column chromatography
(DCM:MeOH; 1 :0 to 5:95) and the crude product dissolved in DCM (lOmL). TFA (5mL) was added and the reaction mixture stirred at r.t .for 30 min. The reaction mixture was added to an SCX cartridge, eluting with MeOH, followed by ammonium hydroxide in methanol (7.5%). The basic fractions were concentrated in vacuo and purified by preparative HPLC (Basic method) to afford the title compound: RT = 2.88 min; mlz (ES+) = 525.26 [M+ H]+. Example 221: 2-[(3R,45)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]-5-[l-(3- isopropyl-[l,2,4]oxadiazol-5- l)-piperidin-4-ylmethoxy]-pyrimidine-4-carbonitrile
Figure imgf000317_0001
The title compound was synthesized from [(3i?,45)-l-(4-cyano-5-hydroxy-pyrimidin- 2-yl)-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 314, 25mg, 59.9μιηο1) and methanesulfonic acid-l-(3-ethyl-[l,2,4]oxadiazol-5-yl)piperidin- 4-ylmethyl ester (Preparation 52, 21.8mg, 0.0719mmol) employing a procedure similar to that outlined in Example 220: RT = 2.92 min; mlz (ES+) = 525.23 [M+ H]+.
Example 222: (3R,4S)-4-(2-Fluoro-5-methyl-phenyl)-l-(5-{(S)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-pi eridin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-ylamine
Figure imgf000317_0002
To a solution of [(3i?,45)-4-(2-fiuoro-5-methyl-phenyl)-l-(5-{(5)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 315, 45mg, 74μηιο1) in MeOH (lmL) was added HC1 in Et20 (2M, 5mL) and the resulting reaction mixture was stirred at r.t. for 120 h. The solvent was removed in vacuo and the remainder purified by preparative HPLC (Basic method) to afford the title compound: RT = 2.88 min; mlz (ES+) = 510.33 [M+ H]+.
Example 223: (3R,45)-l-(5-{l-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-2- methoxy-ethoxy}-pyrimi in-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3yl-amine
Figure imgf000318_0001
The title compound was synthesized from [(3 ?, S)-l-(5-{l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-2-methoxy-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 317, 466mg,
0.704mmol) employing a procedure similar to that outlined in Example 205: RT = 2.84 min; mlz (ES+) = 562.21 [M+ H]+. Example 224: (3R,45)-l-(5-{(R)-l-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- 2-methoxy-ethoxy}-pyrimi in-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine
Figure imgf000318_0002
The title compound was synthesised from (3i?,45)-l-(5-{l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-2-methoxy-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-3yl-amine (Example 223) via chiral HPLC (MTBE:MeOH:BA;
50:50:0.1, 17ml/min, 250nm): RT = 2.84 min; mlz (ES+) = 562.21 [M+ H]+.
Example 225: (3R,45)-l-(5-{S)-l-[l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- 2-methoxy-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine
Figure imgf000318_0003
The title compound was synthesised from (3i?,45)-l-(5-{l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-2-methoxy-ethoxy}-pyrimidin-2-yl)-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-3yl-amine (Example 223) via chiral HPLC (MTBE:MeOH:BA;
50:50:0.1, 17ml/min, 250nm): RT = 2.84 min; mlz (ES+) = 562.21 [M+ H]+.
Example 226: 4-((R)-l-{2-[(3R,45)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxy}-2-m thoxy-ethyl)-piperidine-l-carboxylic acid benzyl ester
Figure imgf000319_0001
The title compound was synthesised from 4-((i?)-l-{2-[(3i?,45)-3-fert- butoxycarbonylamino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-2- methoxy-ethyl)-piperidine-l-carboxylic acid benzyl ester (Preparation 322, 6.3mg, 9.2μmol) employing a procedure similar to that outlined in Example 205: RT = 0.90 min; mlz (ES+) = 586.5 [M+ H]+ (LCMS Method-6). The stereochemistry of * centre has been arbitrarily assigned.
Example 227: l-((lS,25)-2-Amino-4-{5-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin- 4-ylmethoxy] -4-methyl-p rimidin-2-yl}-cyclopentyl)-5,5-difluoro-piperidin-2-one
Figure imgf000319_0002
To a solution of ((15',25)-2-(5,5-difluoro-2-oxo-piperidin-l-yl)-4-{5-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-ylmethoxy]-4-methyl-pyrimidin-2-yl}-cyclopentyl)- carbamic acid tert-butyl ester (Preparation 323, 150mg, 0.24mmol) in DCM (2mL) was added HC1 in dioxane (4M, 5mL) and the resulting reaction mixture stirred at r.t. for 16 h. The solvent was removed in vacuo and the remainder dissolved in DCM and basified with aqueous NaOH (2M). The organic layer was separated, dried (MgS04), filtered and concentrated in vacuo. Purification by preparative HPLC afforded the title compound: RT = 2.70 min; mlz (ES+) = 535.16 [M+ H]+. Example 228: (3R,4S)-4-(2,5-Difluoro-phenyl)-l-(5-{(S)-l-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-4-methyl-pyrimidin-2-yl)-pyrrolidin-3- ylamine hydrochloride
Figure imgf000320_0001
To a solution of [(3i?,45)-4-(2,5-dfluoro-phenyl)-l-(5-{(5)-l-[l-(3-isopropyl-
[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy} -4-methyl-pyrimidin-2-yl)-pyrrolidin-3-yl]- carbamic acid tert-butyl ester (Preparation 324,125mg, 0.199mmol) in DCM (1.5mL) was added HCl in 1,4-dioxane (4M, 5mL) and the resulting reaction mixture was stirred at r.t. for 16 h. The solvent was removed in vacuo and the residue triturated with Et20 to afford the title compound: RT = 3.12 min; m/z (ES+) = 528.36 [M+ H]+.
Example 229: (3R,45)-4-(5-Chloro-2-fluoro-phenyl)-l-{5-[l-(3-isopropyl-
[l,2,4]oxadiazol-5-yl)-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-pyrrolidin-3-ylamine tosylate
Figure imgf000320_0002
To a solution of (3i?,45)-4-(5-chloro-2-fluoro-phenyl)-pyrrolidin-3-ylamine
(Preparation 326, 210mg, 0.98mmol) and 2-choro-5-[l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)piperidin-4-ylmethoxy]pyrimidine (Preparation 2, 220mg, 0.67mmol) in DMSO (2mL) was added DBU (99.8μί, 0.667mmol) and the resulting reaction mixture was stirred at 90°C for 120 h. Upon cooling, the reaction mixture was added to water (200mL) and brine
(lOOmL) and extracted with EtOAc (4 x lOOmL). The combined organic extracts were washed with brine, dried (MgS04), filtered and reduced in vacuo to ~50mL. Oi-tertiary-butyl dicarbonate (500mg, 2.29mmol) was added and the reaction mixture stirred at r.t. for 16 h. The solvent was removed in vacuo and the residue purified by column chromatography (IH:EtOAc; 3:2). Purification by chiral HPLC (MeOH:IH:THF; 80: 17:3, 12ml/min, 250nm, RT = 4.55 min) afforded ((3i?,45)-4-(5-chloro-2-fluoro-phenyl)-l-{5-[l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-pyrrolidin-3-yl)-carbamic acid tert-butyl ester. To a solution of this compound in DCM (8mL) was added TFA (2mL) and the reaction mixture was stirred at r.t. for 2h. The solvent was removed in vacuo and the residue dissolved in EtOAc, washed with NaOH solution (50mL) and brine (50mL), dried (MgS04), filtered and concentrated in vacuo. The remainder was dissolved in EtOAc (2mL) and MeOH (lmL) and TsOH (30mg, 0.16mmol) was added. The solvent was removed in vacuo to afford the title compound: RT = 2.84 min; mlz (ES ) = 516.2 [M+ H]+.
Example 230: (3R,4S)-4-(2,5-Difluoro-phenyl)-l-{5-[l-(5-methoxy-pyrimidin-2-yl)- piperidin-4-ylmethoxy]- rimidin-2-yl}-pyrrolidin-3-ylamine
Figure imgf000321_0001
To a solution of (3i?,45)-4-(2,5-difluorophenyl)-l-[5-(piperidin-4- ylmethoxy)pyrimidin-2-yl]pyrrolidin-3-ylamine (Preparation 64, 45mg, 0.12mmol) in DMSO (lmL) was added 2-chloro-5-methoxypyrimidine (50mg, 0.35 mmol) and DBU (21mg, 0.14mmol). The resulting reaction mixture was heated under microwave irradiation at 100°C for 90 min.Upon cooling, the reaction mixture was diluted with DCM and washed with water. The organic extract was loaded onto a phosphonic acid SCX cartridge, eluting with MeOH, followed by NEt3/MeOH (2%). The basic fraction was concentrated in vacuo and purified by preparative HPLC to afford the title compound: RT = 2.72 min; mlz (ES ) =
Figure imgf000321_0002
The following examples were prepared by reacting (3i?,45)-4-(2,5-difluorophenyl)-l- [5-(piperidin-4-ylmethoxy)pyrimidin-2-yl]pyrrolidin-3-ylamine (Preparation 64) with the appropriate chloro or bromo heteroaryl building block employing a procedure similar to that outlined in Example 230:
Figure imgf000322_0001
Example 235: (3R,4S)-l-[5-(l-Benzothiazol-2-yl-piperidin-4-ylmethoxy)-pyrimidin-2- yl]-4-(2,5-difluoro-phen l)-pyrrolidin-3-ylamine
Figure imgf000323_0001
To a solution of {(3i?,45)-4-(2,5-difluorophenyl)-l-[5-(piperidin-4- ylmethoxy)pyrimidin-2-yl]pyrrolidin-3-yl}carbamic acid tert-butyl ester (Preparation 140, 48.9mg, O. lmmol) in DMSO (lmL) was added 2-chloro-l,3-thiazole-5-carbonitrile (25.4mg, 0.15mmol) and DBU (22mg, 0.15mmol) and the resulting reaction mixture was heated under microwave irradiation at 100 °C for 30 min. The reaction mixture was diluted with DCM and washed with water. The organic extract was dried (MgSC^), filtered and concentrated in vacuo. The remainder wasa purified by preparative HPLC and dissolved in DCM (4 ml). TFA (1 ml) was added and the reaction mixture stirred at r.t. for 2 h, then loaded onto an SCX cartridge eluting with MeOH, followed by NH3 in MeOH (10%). The basic fractions were concentrated in vacuo to afford the title compound: RT = 2.80 min; m/z (ES ) = 523.24 [M+ H]+.
Example 236: 2-(4-{2-[(3R,45)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxymeth l}-piperidin-l-yl)-thiazole-5-carbonitrile
Figure imgf000323_0002
The title compound was synthesized from {(3i?,45)-4-(2,5-difluorophenyl)-l-[5- (piperidin-4-ylmethoxy)pyrimidin-2-yl]pyrrolidin-3-yl}carbamic acid tert-butyl ester
(Preparation 140) and 2-chloro-l,3-thiazole-5-carbonitrile employing a procedure similar to that outlined in Example 235: RT = 2.75 min; m/z (ES+) = 498.16 [M+ H]+.
Example 237: 4-{2-[(3R,45)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxymethyl}-piperidine-l-carboxylic acid benzyl ester
Figure imgf000323_0003
The title compound was synthesised from 4-{2-[(3i?,45)-3-tert- butoxycarbonylamino-4-(2,5-difluorophenyl)pyrrolidin-l-yl]pyrimidin-5- yloxymethyl}piperidine-l-carboxylic acid benzyl ester (Preparation 139) employing a procedure similar to that outlined in Example 205: RT = 2.93 min; mlz (ES+) = 524.22 [M + H]+.
Example 238: 4-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxymeth l}-piperidine-l-carboxylic acid 2-isopropoxy-ethyl ester
Figure imgf000324_0001
To a solution of 2-isopropoxy-ethanol (0.3 mmol) in DCM (1ml) was added a solution of triphosgene (0.1 mmol) in DCM, followed by pyridine (0.41 mmol). After stirring at r.t. for 20 min the solution was added to a stirred solution of {(3i?,45)-4-(2,5- difluorophenyl)- 1 -[5-(piperidin-4-ylmethoxy)pyrimidin-2-yl]pyrrolidin-3-yl} carbamic acid tert-butyl ester (Preparation 140, 48.9mg, 0.1 mmol) in DCM (1ml). The solution was stirred at r.t. for 16 h, diluted with DCM , washed with water, dried (MgS04), filtered and concentrated in vacuo. The reainder was purified by prepartive HPLC and dissolved in DCM (4 ml). TFA (1ml) was added and the reaction mixture stirred at r.t. for 2 h, prior to loading onto an SCX cartridge. The cartridge was eluted with MeOH, followed by NH3 in MeOH (10%) and the basic fractions concentrated in vacuo to afford the title compound: RT = 2.72 min; mlz (ES+) = 520.25 [M + H]+.
Example 239: 4-{2-[(3R,45)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxymethyl}-piperidine-l-carboxylic acid (S)-2-methoxy-l-methyl-ethyl ester
Figure imgf000324_0002
The title compound was synthesized from {(3i?,45)-4-(2,5-difluorophenyl)-l-[5- (piperidin-4-ylmethoxy)pyrimidin-2-yl]pyrrolidin-3-yl} carbamic acid tert-butyl ester (Preparation 140) and (S)-l-methoxypropan-2-ol employing a procedure similar to that outlined in Example 238: RT = 2.67 min; mlz (ES+) = 506.24 [M+ H]+.
Example 240: (3R,4S)-l-(5-{(5)-l-[l-(3-Ethyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)-4-(2-fluoro-5-methyl-phenyl)-pyrrolidin-3-ylamine
hydrochloride
Figure imgf000325_0001
The title compound was synthesised from [(3i?,45)-l-(5-{(5)-l-[l-(3-ethyl- [l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidin-2-yl)-4-(2-fluoro-5-methyl- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 237) employing a procedure similar to that outlined in Example 228: RT = 2.80 min; mlz (ES+) = 496.23 [M +
H]+.
Example 241: (3R,45)-l-(5-{2-[l-(5-Chloro-pyrimidin-2-yl)-piperidin-4-yl]-ethyl}- pyrimidin-2-yl)-4-(2,5-difluoro- henyl)-pyrrolidin-3-ylamine
Figure imgf000325_0002
To a solution of [(3i?,45)-l-(5-{2-[l-(5-chloro-pyrimidin-2-yl)-piperidin-4-yl]- ethyl} -pyrimidin-2-yl)-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 332, 69mg, 0.115mmol) in DCM (2mL) was added TFA (0.3mL) and the resulting reaction mixture was stirred at r.t for 90 min. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M) and the basic fraction concentrated in vacuo. The remainder was purified by column chromatography (DCM:MeOH; 97:3) and further purified by preparative HPLC. Purification by chiral HPLC (MTBE:MeOH:THF:BA; 60:20:20:0.1 , 12.5 ml/min, 250nm, RT = 8.3 min) afforded the title compound: RT = 3.02 min; mlz (ES+) =500.16 [M+ H]+. Example 242: (3R,4S)-4-(2,5-Difluoro-phenyl)-l-(5-{2-[l-(3-isopropyl-[l,2,4]oxadiazol- 5-yl)-piperidin-4-yl]-eth l}-pyrimidin-2-yl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000326_0001
To a solution of [(3i?,45)-l-{5-[2-(l-cyano-piperidin-4-yl)-ethyl]-pyrimidin-2-yl}-4- (2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 333, 69mg, 0.135mmol) in EtOH (5mL) was added N-hydroxyisobutyramidine (17mg,
0.162mmol) followed by dropwise addition of zinc dichloride in Et20(lM, 0.162mL, 0.162mmol) and the resulting reaction mixture was stirred at r.t. for 16 h. HC1 in 1,4- dioxane (4M, 0.168mL, 0.673mmol) was added and the reaction mixture heated at 70°C for 9 h. Upon cooling, the reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M) and the basic fractions were concentrated in vacuo. The remainder was purified by preparative HPLC and loaded onto a SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M) and the basic fractions were concentrated in vacuo. The remainder was dissolved in MeOH (lmL), HC1 in Et20 (2M, 50μί) was added and the solution was stirred at r.t. for 15 min. The solvent was removed in vacuo to afford the title compound: RT = 0.86 min; m/z (ES+) = 498.5 [M+ H]+ (LCMS Method-6).
Example 243: (3R,45)-l-{5-[(3S,4R)-3-Fluoro-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000326_0002
To a solution of [(3i?,45)-l-{5-[(3^,4i?)-3-fluoro-l-(3-isopropyl-[l,2,4]oxadiazol-5- yl)-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]- carbamic acid tert-butyl ester (Preparation 337, 27mg, 0.042mmol) in DCM (2mL) was added TFA (98.2μΕ, 1.27mmol) and the resulting reaction mixture was stirred at r.t. for 6 h. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M) and the basic fractions were concentrated in vacuo. The remainder was dissolved in MeOH (lmL) and HC1 in Et20 (2M, 50μΕ) was added. After 10 min, the solvent was removed in vacuo to afford the title compound: RT = 0.87 min; m/z (ES+) = 536.4 [M+ ] (LCMS Method-6).
Example 244: (3R,45)-l-{5-[(3R,4S)-3-Fluoro-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000327_0001
The title compound was synthesized from [(3i?,45)-l-{5-[(3i?,45)-3-fluoro-l-(3- isopropyl-[l,2,4]oxadiazol-5-yl)-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 336) employing a procedure similar to that outlined in Example 243: RT = 0.87 min; m/z (ES+) = 536.4 [M + H]+ (LCMS Method-6).
Example 245: (3R,45)-l-{5-[(3R,4R)-l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-3-methyl- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000327_0002
To a solution of [(3 ?,45)-l-{5-[(cz5)-l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)-3-methyl- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 340, 92mg, 0.14mmol) in DCM (4mL) was added TFA (33.7μΙ.) and the resulting reaction mixture was stirred at r.t. for 4 h. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M) and the basic fractions were concentrated in vacuo. The remainder was dissolved in THF (2mL) and HC1 in Et20 (2M) was added. The solvent was removed in vacuo and the remainder purified by chiral HPLC (MeCN:MeOH:BA; 50:50:0.1, 15ml/min, 250nm). The compound was dissolved in MeOH (lmL), HC1 in Et20 (2M, 50μί) was added and the solution was stirred at r.t. for 15 min. The solvent was removed in vacuo to afford the title compound: RT = 0.91 min; m/z (ES+) = 532.4 [M+ H]+ (LCMS Method-6). Example 246: (3R,4S)-l-{5-[(3S,4S)-l-(3-Isopropyl-[l,2,4]oxadiazol-5-yl)-3-methyl- piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000328_0001
The title compound was synthesised from [(3i?,45)-l-{5-[(cz5)-l-(3-isopropyl- [l,2,4]oxadiazol-5-yl)-3-methyl-piperidin-4-ylmethoxy]-pyrimidin-2-yl}-4-(2,4,5-trifluoro- phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 340, 92mg, 0.14mmol) employing the procedure outlined in Example 245: RT = 0.90 min; m/z (ES ) = 532.4 [M + H]+ (LCMS Method-6).
Example 247: (3R,45)-l-[5-((S)-l-{l-[(R)-3-(Tetrahydro-furan-3-yl)-[l,2,4]oxadiazol-5- yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3- ylamine hydrochloride
Figure imgf000328_0002
The title compound was synthesised from [(3i?,45)-l-[5-((5)-l-{l-[(5)-3-(tetrahydro- furan-3-yl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-fri phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 341) employing a procedure similar to that outlined in Example 243: RT = 0.81 min; m/z (ES+) = 560.4 [M + H]+ (LCMS Method-6).
Example 248: (3R,45)-l-[5-((S)-l-{l-[(S)-3-(Tetrahydro-furan-3-yl)-[l,2,4]oxadiazol-5- yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3- ylamine hydrochloride
Figure imgf000328_0003
The title compound was synthesised from [(3i?,45)-l-[5-((5)-l-{l-[(i?)-3-(tetrahydro- furan-3-yl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-fri phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 342) employing a procedure similar to that outlined in Example 243: RT = 0.81 min; mlz (ES+) = 560.4 [M + H]+ (LCMS Method-6). Example 249: 2-{2-[4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l- yl]-pyrimidin-5- loxy}-ethyl)-piperidin-l-yl]-oxazol-4-yl}-propan-2-ol tosylate
Figure imgf000329_0001
To a solution of 2-[4-((5)-l-{2-[(3i?,45)-3-tert-butoxycarbonylamino-4-(2,5-difluoro- phenyl)-pyrrolidin-l -yl]-pyrimidin-5-yloxy} -ethyl)-piperidin- 1 -yl]-oxazole-4-carboxylic acid ethyl ester (Preparation 343, 0.203g, 0.316mmol) in anhydrous THF (3mL), cooled to - 30°C under argon, was added methylmagnesium bromide (3M in Et20, 0.527mL, 1.58mmol) and the resulting reaction mixture was stirred at -30°C for 2 h. The reaction mixture was quenched with saturated aqueous NH4C1 solution (5mL) and warmed to r.t. The reaction mixture was partitioned between EtOAc (25mL) and saturated aqueous NH4CI solution (20mL). The organic layer was separated, washed with brine (25mL), passed through a hydrophobic frit and concentrated in vacuo. The remainder was purified by preparative HPLC and then dissolved in DCM (1.5mL). TFA (0.5mL, 6mmol) was added and the reaction mixture stirred at r.t. for 90 min. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (7M) and the basic fractions were concentrated in vacuo. The remainder was purified by column chromotogrpahy (DCM:7M NH3/MeOH; 1 :99 to 2:99 to 3:99) and then dissolved in MeOH (lmL). TsOH (25mg, 0.13mmol) in MeOH (0.5mL) was added and the solvent removed in vacuo to afford the title compound: RT = 0.68 min; mlz (ES+) = 529.41 [M+ H]+ (LCMS Method-6). Example 250: (5)-2-{5-[4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)- pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-butan- 2-ol tosylate
Figure imgf000329_0002
To a solution of {(3i?,45)-4-(2,5-difluoro-phenyl)-l-[5-((5)-l-{l-[3-(l-hydroxy-l- methyl-propyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-py^ yl} -carbamic acid tert-butyl ester (Preparation 346, lOOmg, 0.156mmol) in DCM (2mL) was added TFA (0.5mL) and the resulting reaction mixture was stirred at r.t. for 1 h. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (2M) and the basic fractions were concentrated in vacuo. The remainder was purified by chiral HPLC (MeCN:MeOH:THF:BA; 60:20:20:0.05, 13ml/min, 250nm) and loaded in MeOH onto an SCX cartridge, eluting with MeOH, followed by NH3 in MeOH (2M). The basic fractions were concentrated in vacuo, the remainder redissolved in MeOH and TsOH (1 equivalent) added. The solvent was removed in vacuo to afford the title compound: RT = 0.78 min; m/z (ES+) = 544.48 [M+ H]+ (LCMS Method-6).
Example 251: (R)-2-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)- pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-butan- 2-ol tosylate
Figure imgf000330_0001
The title compound was synthesized from {(3 ?,45)-4-(2,5-difluoro-phenyl)-l-[5-((5)- l-{l-[3-(l-hydroxy-l-methyl-propyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)- pyrimidin-2-yl]-pyrrolidin-3-yl} -carbamic acid tert-butyl ester (Preparation 346)
employing the procedure outlined in Example 250: RT = 0.77 min; m/z (ES+) = 544.48 [M + H]+ (LCMS Method-6).
Example 252: (5)-l-{5-[4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)- pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-l- cyclopropyl-ethanol tos late
Figure imgf000330_0002
[(3R,4S)- 1 - [5 -((S)- 1 - { 1 - [3 -((S)- 1 -cyclopropyl- 1 -hydroxy-ethyl)- [ 1 ,2,4]oxadiazol-5 - yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,5-difluoro-phenyl)-pyrrolodin-3-yl]- carbamic acid tert-butyl ester was isolated from [(3i?,45)-l-[5-((5)-l-{l-[3-(l-cyclopropyl-l- hydroxy-ethyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,5- difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 347, 136mg, 0.208mmol) via chiral HPLC: (IH:MeOH:THF; 60:30: 10, 18ml/min, 250nm). The compound was dissolved in DCM (2mL), TFA (0.5mL) was added and the reaction mixture stirred at r.t. for 1 h. The reaction mixture was loaded onto an SCX cartridge, eluting with MeOH, followed by N¾ in MeOH (2M) and the basic fractions were concentrated in vacuo. The remainder was dissolved in MeOH and TsOH (1 equivalent) was added. The solvent was removed in vacuo to afford the title compound: RT = 0.80 min; mlz (ES+) = 556.45 [M + H]+ (LCMS Method-6). Example 253: (R)-l-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)- pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-l- cyclopropyl-ethanol tos late
Figure imgf000331_0001
The title compound was synthesised from [(3i?,45)-l-[5-((5)-l-{l-[3-(l-cyclopropyl- l-hydroxy-ethyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,5- difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 347)
employing the procedure outlined in Example 252: RT = 0.80 min; mlz (ES+) = 556.45 [M + H]+ (LCMS Method-6). Example 254: 2-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l- yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-2-methyl-propan-l- ol hydrochloride
Figure imgf000331_0002
To a solution of [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2- yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 205, 0.150g, 0.284mmol) and 3,N-dihydroxy-2,2-dimethyl-propionamidine (Preparation 349, 45.0mg, 0.340mmol) in EtOH (5mL) was added dropwise a solution of dichlorozinc
(38.7mg, 0.284mmol) in EtOH (lmL) and the resulting reaction mixture was stirred at r.t. for 3 h. HCl in 1,4-dioxane (4M, 0.2mL, 0.6mmol) was added and the reaction mixture heated at 80°C for 5 h. The solvent was removed in vacuo and the remainder neutralized with saturated aqueous NaHC03 solution and extracted with EtOAc (3 x 50mL). The combined organic extracts were washed with brine, dried (MgSC^), filtered and concentrated in vacuo and the remainder purified by preparative HPLC. The product was dissolved in MeOH (0.5mL) and HC1 in Et20 (2.5M, 25μί, 0.050mmol) was added. The reaction mixture was stirred at r.t. for 10 min and the solvent removed in vacuo to afford the title compound: RT = 0.79 min; mlz (ES+) = 544.45 [M+ H]+ (LCMS Method-6).
Example 255: 2-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-2-methyl-propan- l-ol hydrochloride
Figure imgf000332_0001
The title compound was synthesised from [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4- yl)-ethoxy]-pyrimidin-2-yl} -4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester (Preparation 206) and 3,N-dihydroxy-2,2-dimethyl-propionamidine
(Preparation 349) employing a procedure similar to that outlined in Example 254: RT = 0.80 min; mlz (ES+) = 562.44 [M+ H]+ (LCMS Method-6).
Example 256: 2-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l- yl]-pyrimidin-5- loxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-propan-2-ol tosylate
Figure imgf000332_0002
The title compound was synthesised from {(3R,4S)-4-(2,5-difluoro-phenyl)-l-[5-((S)- l-{l-[3-(l-hydroxy-l-methyl-ethyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)- pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 350)
employing a procedure similar to that outlined in Example 134: RT = 0.76 min; mlz (ES ) = 530.46 [M+ H]+ (LCMS Method-6). Example 257: 2-{5-[4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,4-difluoro-5-methyl-phenyl)- pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}- propan-2-ol hydrochlori
Figure imgf000333_0001
The title compound was synthesized from {(3i?,45)-4-(2,4-difluoro-5-methyl- phenyl)- 1 -[5-((S)-l - { 1 -[3 -(1 -hydroxy- 1 -methyl-ethyl)- [ 1 ,2,4]oxadiazol-5 -yl] -piperidin-4- yl}-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamicacid tert-butyl ester (Preparation 354) employing a procedure similar to that outlined in Example 243: RT = 0.90 min; m/z (ES+) = 544.44 [M+ H]+ (LCMS Method-6).
Example 258: l-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l- yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-cyclopropanol hydrochloride
Figure imgf000333_0002
To a solution of 4-fiuoro-benzoic acid l-{5-[4-((5)-l-{2-[(3i?,45)-3-tert- butoxycarbonylamino-4-(2,5-difluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)- piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-cyclopropyl ester (Preparation 358, 0.121g, 0.161mmol) in THF (5.0mL), MeOH (2.50mL) and H20 (2.50mL) was added lithium hydroxide monohydrate (27.1mg, 0.646mmol) and the resulting reaction mixture was stirred at r.t. for 16 h. The reaction mixture was acidified with 2M HCl and the solvent removed in vacuo. The remainder was dissolved in DCM (lOmL) and the resulting solution cooled to 0°C prior to the dropwise addition of TFA (1.5mL, 19mmol). The reaction mixture was stirred at r.t. for 2 h, diluted with DCM (lOOmL), washed with saturated aqueous NaHC03 solution (2 x), passed through a hydrophobic frit and concentrated in vacuo. The remainder was purified by column chromatography (DCM MeOH; 9: 1). The product was dissolved in MeOH (0.5mL), HCl in Et20 (2M, 21 xL, 54μιηο1) was added and the reaction mixture stirred at r.t. for 10 min. The solvent was removed in vacuo to afford the title compound: RT = 0.76 min; mlz (ES+) = 528.38 [M+ H]+ (LCMS Method-6). Example 259: 4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxy}-ethyl)- iperidine-l-carboxylic acid amide
Figure imgf000334_0001
To a solution of [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)-ethoxy]-pyrimidin-2- yl}-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 206, 0.250g, 0.457mmol) and 2,N-dihydroxy-propionamidine (57mg, 0.55mmol) in EtOH (17mL) was added a solution of zinc dichloride (62mg, 0.46mmol) in EtOH (17mL) and the resulting reaction mixture was stirred at r.t. for 4 h. HCl in 1,4-dioxane (4M, 0.572mL, 2.29mmol) was added and the reaction mixture heated at 80°C for 1 h. The solvent was removed in vacuo and the remainder neutralized with saturated aqueous NaHC03 solution and extracted into EtOAC (3 x 50mL). The combined organic extracts were washed with brine, dried (MgSC^), filtered and concentrated in vacuo. Purification by column
chromatography (DCM:MeOH; 9: 1 to 17:3) afforded the title compound: RT = 0.69 min; mlz (ES+) = 465.37 [M+ H]+ (LCMS Method-6).
Example 260: l-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l- yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-cyclobutanol tosylate
Figure imgf000334_0002
To a solution of {(3i?,45)-4-(2,5-difluoro-phenyl)-l-[5-((5)-l-{l-[3-(l-hydroxy- cyclobutyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-yl}- carbamic acid tert-butyl ester tert-butyl (Preparation 362, 55mg, 0.086mmol) in 1,4- dioxane (ImL) was added HCl in 1,4-dioxane (4M, ImL, 8mmol) and the resulting reaction mixture was stirred at r.t. for 2 h. The solvent was removed in vacuo and the remainder partitioned between DCM (5mL) and saturated aqueous NaHC03 solution (3mL). The organic layer was separated, concentrated in vacuo and the remainder purified by preparative HPLC. The product was dissolved in DCM (ImL) and TsOH (7.2mg, 38μιηο1) in MeOH (0.5mL) was added. The solvent was removed in vacuo to afford the title compound: RT = 0.76 min; mlz (ES+) = 542.45 [M+ H]+ (LCMS Method-6). Example 261: l-{5-[4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-cyclobutanol hydrochloride
Figure imgf000335_0001
The title compound was synthesized from benzoic acid l-{5-[4-((5)-l-{2-[(3i?,45)-3- tert-butoxycarbonylamino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l-yl]-pyrimidin-5-yloxy}- ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-cyclobutyl ester (Preparation 363) employing a procedure similar to that outlined in Example 258: RT = 0.79 min; mlz (ES+) = 560.40 [M + H]+ (LCMS Method-6).
Example 262: (5)-l-{5-[4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)- pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}- propan-2-ol
Figure imgf000335_0002
A solution of 3-hydroxybutyronitrile (98.5mg, 11.6mmol) and hydroxylamine (50% aqueous solution, 0.85 lmL, 13.9mmol) in EtOH (20mL) was heated at 60°C for 5 h and at 70°C for 10 h. Further hydroxylamine (50% aqueous solution, 0.1 OmL, 1.63mmol) was added and the reaction mixture heated at 70°C for 10 h. The solvent was removed in vacuo and the remainder dissolved in EtOH (4mL). [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4-yl)- ethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 205, 0.1 Og, 0.189mmol) was added followed by zinc dichloride in Et20 (1M, 0.227mL, 0.227mmol) and the resulting reaction mixture stirred at r.t. for 2 h. Further zinc dichloride in Et20 (1M, 25μΙ^, 25μmol) was added and the reaction mixture stirred at r.t. for 4.5 h. HCl in 1,4-dioxane (4M, 0.236mL, 0.946mmol) was added and the mixture heated at 60°C for 7 h. Upon cooling, the reaction mixture was partitioned between EtOAc and water and the organic layer passed through a hydrophobic frit and concentrated in vacuo. The remainder was purified by preparative HPLC, followed by further purification by chiral HPLC (MeOH : THF : IH : B A; 50:30:20:0.5, 16ml/min, 250nm). The compound was loaded onto an SCX cartridge, eluting with MeOH followed by NH3 in MeOH (7M) and the basic fractions concentrated in vacuo to afford the title compound: RT = 0.75 min; mlz (ES ) = 530.42 [M+ H]+ (LCMS Method-6). The stereochemistry of * centre has been arbitrarily assigned. Example 263: l-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l- yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-2-methyl-propan-2- ol hydrochloride
Figure imgf000336_0001
The title compound was synthesised from [(3R,4S)-l-{5-[(S)-l-(l-cyano-piperidin-4- yl)-ethoxy]-pyrimidin-2-yl}-4-(2,5-difluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester (Preparation 205) and 3,N-dihydroxy-3-methyl-butyramidine (Preparation 364) employing a procedure similar to that outlined in Example 254: RT = 0.77 min; mlz (ES ) = 544.44 [M+ H]+ (LCMS Method-6). Example 264: 2-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,5-difluoro-phenyl)-pyrrolidin-l- yl]-pyrimidin-5-yloxy}-eth l)-piperidin-l-yl]-tetrazol-2-yl}-2-methyl-propan-l-ol
Figure imgf000336_0002
The title compound was synthesised from {(3R,4S)-4-(2,5-difluoro-phenyl)-l-[5-((S)- 1 - { 1 -[2-(2-hydroxy-l , 1 -dimethyl-ethyl)-2H-tetrazol-5-yl]-piperidin-4-yl} -ethoxy)- pyrimidin-2-yl]-pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 367)
employing a procedure similar to that outlined in Example 205: RT = 0.82 min; mlz (ES ) = 544.42 [M+ H]+ (LCMS Method-6).
The following examples were prepared by deprotection of the appropriate tert-butoxy carbonyl protected intermediates (Preparation 374 or 375 or 376) employing a procedure similar to that outlined in Example 243:
Figure imgf000337_0001
Example 268: (S)-l-{5-[4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-l- cyclopropyl-ethanol hy rochloride
Figure imgf000338_0001
[(3R,4S)- 1 -[5 -((S)- 1 - { 1 -[3-((S 1 -Cyclopropyl- 1 -hydroxy-ethyl)-[ 1 ,2,4]oxadiazol-5- yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- carbamic acid tert-butyl ester (12.1mg, 18μηιο1) was isolated from [(3 ?,45)-l-[5-((5)-l-{l- [3-(l-cyclopropyl-l-hydroxy-ethyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)- pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Prepartion 378) via chiral HPLC (MTBE:MeCN:MeOH; 70:20: 10, 14ml/min, 250nm) and dissolved in DCM (2mL). HC1 in Et20 (2M, 16.5μΕ, 33μmol) was added and the reaction mixture stirred at r.t. for 16 h. The solvent was removed in vacuo and the remainder triturated with Et20 to afford the title compound: RT = 0.83 min; m/z (ES+) = 574.5 [M+ H] (LCMS Method-6).
Example 269: (R)-l-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)- pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-l- cyclopropyl-ethanol hy rochloride
Figure imgf000338_0002
The title compound was synthesized from [(3 ?,45)-l-[5-((5)-l-{l-[3-(l-cyclopropyl- l-hydroxy-ethyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5- trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Prepartion 378) employing the procedure outlined in Example 268: RT = 0.83 min; m/z (ES+) = 574.5 [M+ H]+ (LCMS Method-6). Example 270: (3R,4S)-4-(2,5-Difluoro-phenyl)-l-{5-[(lR,5S,9S)-7-(3-ethyl- [l,2,4]oxadiazol-5-yl)-3-oxa-7-aza-bicyclo[3.3.1]non-9-ylmethoxy]-pyrimidin-2-yl}- pyrrolidin-3-ylamine hydrochloride
Figure imgf000339_0001
(3^,45)-4-(2,5-ϋίΑηοΓθ-ρ1ΐ6η 1)-1-{5-[(ϋ?,5^,95)-7-(3-6 1-[1,2,4]οχα(1ίαζο1-5^1)- 3-oxa-7-aza-bicyclo[3.3.1 ]non-9-ylmethoxy]-pyrimidin-2-yl} -pyrrolidin-3-ylamine was isolated from ((3i?,45)-4-(2,5-difluoro-phenyl)-l-{5-[(li?,55)-7-(3-ethyl-[l,2,4]oxadiazol-5- yl)-3-oxa-7-aza-bicyclo[3.3.1 ]non-9-ylmethoxy]-pyrimidin-2-yl} -pyrrolidin-3-yl)-carbamic acid tert-butyl ester (Preparation 387) via chiral HPLC (MTBE:MeOH; 80:20, 13ml/min, 250nm) and dissolved in Et20 (lmL). HC1 in Et20 (2M, 29μί, 57μmol) was added and the reaction mixture stirred at r.t. for 16 h. The solvent was removed in vacuo to afford the title compound: RT = 0.73 min; mlz (ES+) = 528.4 [M+ H]+ (LCMS Method-6).
Example 271: (3R,45)-4-(2,5-Difluoro-phenyl)-l-{5-[(lR,5S,9R)-7-(3-ethyl- [l,2,4]oxadiazol-5-yl)-3-oxa-7-aza-bicyclo[3.3.1]non-9-ylmethoxy]-pyrimidin-2-yl}- pyrrolidin-3-ylamine hydrochloride
Figure imgf000339_0002
The title compound was synthesized from ((3i?,45)-4-(2,5-difluoro-phenyl)-l-{5- [(li?,55)-7-(3-ethyl-[l,2,4]oxadiazol-5-yl)-3-oxa-7-aza-bicyclo[3.3.1]non-9-ylmethoxy]- pyrimidin-2-yl}-pyrrolidin-3-yl)-carbamic acid tert-butyl ester (Preparation 387)
employing the procedure outlined in Example 270: RT = 0.73 min; mlz (ES ) = 528.4 [M H]+ (LCMS Method-6).
Example 272: (3R,45)-4-(2-Fluoro-phenyl)-l-[5-((S)-l-{l-[3-((S)-l-methoxy-ethyl)-
[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-ylamine hydrochloride
Figure imgf000339_0003
The title compound was synthesised from {(3R,4S)-4-(2-fluoro-phenyl)-l-[5-((S)-l- { 1 -[3-((iS)- 1 -methoxy-ethyl)-[ 1 ,2,4]oxadiazol-5-yl]-piperidin-4-yl} -ethoxy)-pyrimidin-2-yl]- pyrrolidin-3-yl} -carbamic acid tert-butyl ester (Preparation 396) employing a procedure similar to that outlined in Preparation 243: RT = 0.78 min; m/z (ES+) = 512.4 [M + H]+ (LCMS Method-6).
The following examples were prepared by deprotection of the appropriate tert-butoxy carbonyl protected intermediates (Preparation 397 or 400 or 403 or 404) employing a procedure similar to that outlined in Example 258:
Figure imgf000341_0001
Example 277: (l-{5-[4-((S)-l-{2-[(3R,4S)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin- l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}-cyclopropyl)- methanol hydrochlori
Figure imgf000342_0001
The title compound was synthesised from [(3i?,45)-l-{5-[(5)-l-(l-cyano-piperidin-4- yl)-ethoxy]-pyrimidin-2-yl} -4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-yl]-carbamic acid tert- butyl ester (Preparation 206) and N-hydroxy-l-hydroxymethyl-cyclopropanecarboxamidine (Preparation 405) employing a procedure similar to that outlined in Example 254: RT = 0.79 min; mlz (ES+) = 560.43 [M+ H]+ (LCMS Method-6).
Example 278: 2-{5-[4-((5)-l-{2-[(3R,4S)-3-Amino-4-(2-fluoro-5-methyl-phenyl)- pyrrolidin-l-yl]-pyrimidin-5-yloxy}-ethyl)-piperidin-l-yl]-[l,2,4]oxadiazol-3-yl}- propan-2-ol hydrochloride
Figure imgf000342_0002
To a solution of {(3i?,45)-4-(2-fluoro-5-methyl-phenyl)-l-[5-((5)-l-{l-[3-(l- hydroxy- 1 -methyl-ethyl)-[ 1 ,2,4]oxadiazol-5-yl]-piperidin-4-yl} -ethoxy)-pyrimidin-2-yl]- pyrrolidin-3-yl}-carbamic acid tert-butyl ester (Preparation 407, 16mg, 26μmol)) in MeOH (0.25mL) was added HCl in Et20 (2M, ImL, 2mmol) and the resulting reaction mixture was stirred at r.t. for 16 h. The solvent was removed in vacuo to afford the title compound: RT = 0.79 min; mlz (ES+) = 526.5 [M + H]+ (LCMS Method-6).
Example 279: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(5-ethyl-pyrimidin-2-yl)-piperidin-4- yl]-ethoxy}-pyrimidin-2- l)-pyrrolidin-3-yl]-5-methyl-lH-pyridin-2-one
Figure imgf000342_0003
To a solution of 2-chloro-5-(15)- 1 -[ 1 -(5-ethylpyrimidin-2-yl)piperidin-4- yl]ethoxypyrimidine (Preparation 414, 123mg, 0.353mmol) and l-((tra/?5)-4-amino- pyrrolidin-3-yl)-5-methyl-lH-pyridin-2-one (Preparation 194, 40.0mg, 0.204mmol) in DMSO (lmL) was added DBU (50μί, 0.334mmol) and the resulting reaction mixture was heated under microwave irradiation at 120°C for 195 min. Upon cooling, the reaction mixture was poured into water and extracted with EtOAc (3 x). The combined organic extracts were dried in a phase separator and concentrated in vacuo. The remainder was dissolved in MeOH and loaded onto a phosphonic acid SCX cartridge eluting with MeOH followed by N¾ in MeOH. The basic fractions were concentrated in vacuo and purified by chiral HPLC (MeCN:THF:BA; 50:50:0.05, 16 ml/min, 250 nm, RT = 10.3 min) to afford the title compound: RT = 0.77 min; mlz (ES+) = 505.44 [M+ H]+ (LCMS Method-6). Example 280: l-[(3S,4S)-4-Amino-l-(5-{(5)-l-[l-(5-ethyl-pyrazin-2-yl)-piperidin-4-yl]- ethoxy}-pyrimidin-2-yl)- rrolidin-3-yl]-5-methyl-lH-pyridin-2-one
Figure imgf000343_0001
The title compound was synthesised from 2-chloro-5-{(S)-l-[l-(5-ethyl-pyrazin-2- yl)-piperidin-4-yl]-ethoxy}-pyrimidine (Preparation 415) and l-((trans)-4-ammo- pyrrolidin-3-yl)-5-methyl-lH-pyridin-2-one (Preparation 194) employing a procedure similar to that outlined in Example 279, replacing the chiral HPLC conditions as follows: (MeOH:THF:BA; 65:35:0.05, 15 ml/min, 250 nm, RT = 10.1 min): RT = 0.78 min; mlz (ES+) = 505.43 [M+ H]+ (LCMS Method-6). Example 281: l-[(3S,4S)-4-Amino-l-(5-{(S)-l-[l-(5-chloro-pyrimidin-2-yl)-piperidin-4- yl]-ethoxy}-pyrimidin-2- l)-pyrrolidin-3-yl]-5-methyl-lH-pyridin-2-one
Figure imgf000343_0002
The title compound was synthesized from 5-chloro-2-(4-(5)-l-[(2-chloropyrimidin-; yl)oxy] ethylpiperidin-l-yl)pyrimidine (Preparation 416) and l-((trans)-4-ammo- pyrrolidin-3-yl)-5-methyl-lH-pyridin-2-one (Preparation 194) employing a procedure similar to that outlined in Example 279, replacing the chiral HPLC conditions as follows: (MeCN:THF:BA; 50:50:0.05, 16 ml/min, 250 nm, RT = 12.5 min): RT = 0.87 min; mlz (ES+) = 511.37 [M+ H]+ (LCMS Method-6). Example 282: l-{(3S,4S)-4-Amino-l-[5-((S)-l-{l-[3-(l,l-difluoro-ethyl)-[l,2,4]oxadiazol-
5-yl]-piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-pyrrolidin-3-yl}-5-methyl-lH-pyridin-2- one
Figure imgf000344_0001
The title compound was synthesised from 2-chloro-5-((5)-l-{l-[3-(l,l-difluoro- ethyl)-[l,2,4]oxadiazol-5-yl]-piperidin-4-yl}-ethoxy)-pyrimidine (Preparation 418) and 1- ((tra/75)-4-amino-pyrrolidin-3-yl)-5 -methyl- lH-pyridin-2-one (Preparation 194) employing a procedure similar to that outlined in Example 279, replacing the chiral HPLC conditions as follows: (MeCN:THF:BA; 65:35:0.05, 15 ml/min, 250 nm, RT = 8.6 min): RT = 0.81 min; mlz (ES+) = 531.41 [M+ H]+ (LCMS Method-6).
Example 283: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(3-isopropyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-yl]-ethoxy}- rimidin-2-yl)-pyrrolidin-3-yl]-5-methyl-lH-pyridin-2-one
Figure imgf000344_0002
The title compound was synthesised from 2-chloro-5-{(5)-l-[l-(3-isopropyl-
[l,2,4]oxadiazol-5-yl)piperidin-4-yl]ethoxy}pyrimidine (Preparation 63) and \- trans)- - amino-pyrrolidin-3-yl)-5 -methyl- lH-pyridin-2-one (Preparation 194) employing a procedure similar to that outlined in Example 279, replacing the chiral HPLC conditions as follows: (MeOH:THF:BA; 85:15:0.05, 12 ml/min, 250 nm, RT = 16.0 min): RT = 0.79 min; mlz (ES+) = 509.46 [M + H]+ (LCMS Method-6).
Example 284: l-[(3S,4S)-4-Amino-l-(5-{(S)-l-[l-(3-trifluoromethyl-[l,2,4]oxadiazol-5- yl)-piperidin-4-yl]-ethox -pyrimidin-2-yl)-pyrrolidin-3-yl]-5-methyl-lH-pyridin-2-one
Figure imgf000344_0003
The title compound was synthesised from 2-chloro-5-{(S)-l-[l-(3-trifluoromethyl-
[l,2,4]oxadiazol-5-yl)-piperidin-4-yl]-ethoxy}-pyrimidine (Preparation 421) and \- trans)- 4-amino-pyrrolidin-3-yl)-5 -methyl- lH-pyridin-2-one (Preparation 194) employing a procedure similar to that outlined in Example 279, replacing the chiral HPLC conditions as follows: (MeOH:THF:BA; 85:15:0.05, 12 ml/min, 250 nm, RT = 12.9 min): RT = 0.87 min; mlz (ES+) = 535.43 [M+ H]+ (LCMS Method-6). Example 285: l-[(3S,45)-4-Amino-l-(5-{(S)-l-[l-(3-tert-butyl-[l,2,4]oxadiazol-5-yl)- piperidin-4-yl]-ethoxy}- rimidin-2-yl)-pyrrolidin-3-yl]-5-methyl-lH-pyridin-2-one
Figure imgf000345_0001
The title compound was synthesised from 5-{(S)-l-[l-(3-tert-butyl-[l,2,4]oxadiazol- 5-yl)-piperidin-4-yl]-ethoxy}-2-chloro-pyrimidine (Preparation 422) and 1 -((trans)-4- amino-pyrrolidin-3-yl)-5 -methyl- lH-pyridin-2-one (Preparation 194) employing a procedure similar to that outlined in Example 279, replacing the chiral HPLC conditions as follows: (MTBE :THF :MeOH:BA; 60:30: 10:0.05, 12 ml/min, 250 nm, RT = 11.5 min): RT = 0.85 min; mlz (ES+) = 523.45 [M+ H]+ (LCMS Method-6). Example 286: (3R,45)-l-[5-((S)-l-{l-[(S)-2-(Tetrahydro-furan-3-yl)-2H-tetrazol-5-yl]- piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000345_0002
The title compound was synthesized from [(3 ?,45)-l-[5-((5)-l-{l-[(5)-2-(tetrahydro- mran-3-yl)-2H-tetrazol-5-yl]-piperidin-4-yl}-e^
phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 423) employing the procedure outlined in Example 243: RT = 0.84 min; mlz (ES+) = 560.47 [M+ H]+ (LCMS Method-6). Example 287: (3R,4S)-l-[5-((S)-l-{l-[(R)-2-(Tetrahydro-furan-3-yl)-2H-tetrazol-5-yl]- piperidin-4-yl}-ethoxy)-pyrimidin-2-yl]-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-3-ylamine hydrochloride
Figure imgf000346_0001
The title compound was synthesized from [(3 ?,4S)-l-[5-((S)-l-{l-[(i?)-2-(tetrahyd mran-3-yl)-2H-tetrazol-5-yl]-piperidin-4-yl^
phenyl)-pyrrolidin-3-yl]-carbamic acid tert-butyl ester (Preparation 424) employing the procedure outlined in Example 243: RT = 0.82 min; m/z (ES+) = 560.49 [M+ H]+ (LCMS Method-6).
The biological activity of the compounds of the invention may be tested in the following assay systems:
GPR119 Yeast Reporter Assay
Yeast Reporter Assay
The yeast cell-based reporter assays have previously been described in the literature (e.g. see Miret J. J. et al, 2002, J. Biol. Chem., 277:6881-6887; Campbell R.M. et al, 1999, Bioorg. Med. Chem. Lett., 9:2413-2418; King K. et al, 1990, Science, 250: 121-123); WO 99/14344; WO 00/12704; and US 6,100,042). Briefly, yeast cells have been engineered such that the endogenous yeast G-alpha (GPA1) has been deleted and replaced with G-protein chimeras constructed using multiple techniques. Additionally, the endogenous yeast GPCR, Ste3 has been deleted to allow for heterologous expression of a mammalian GPCR of choice. In the yeast, elements of the pheromone signaling transduction pathway, which are conserved in eukaryotic cells (for example, the mitogen-activated protein kinase pathway), drive the expression of Fusl . By placing β-galactosidase (LacZ) under the control of the Fusl promoter (Fuslp), a system has been developed whereby receptor activation leads to an enzymatic read-out.
Yeast cells were transformed by an adaptation of the lithium acetate method described by Agatep et al, (Agatep, R. et al, 1998, Transformation of Saccharomyces cerevisiae by the lithium acetate/single-stranded carrier DNA/polyethylene glycol (LiAc/ss- DNA/PEG) protocol. Technical Tips Online, Trends Journals, Elsevier). Briefly, yeast cells were grown overnight on yeast tryptone plates (YT). Carrier single-stranded DNA (10 μg), 2 μg of each of two Fuslp-LacZ reporter plasmids (one with URA selection marker and one with TRP), 2 μg of GPR119 (human or mouse receptor) in yeast expression vector (2 μg origin of replication) and a lithium acetate/ polyethylene glycol/ TE buffer was pipetted into an Eppendorf tube. The yeast expression plasmid containing the receptor/ no receptor control has a LEU marker. Yeast cells were inoculated into this mixture and the reaction proceeds at 30°C for 60min. The yeast cells were then heat-shocked at 42°C for 15 min. The cells were then washed and spread on selection plates. The selection plates are synthetic defined yeast media minus LEU, URA and TRP (SD-LUT). After incubating at 30°C for 2-3 days, colonies that grow on the selection plates were then tested in the LacZ assay.
In order to perform fluorimetric enzyme assays for β-galactosidase, yeast cells carrying the human or mouse GPR119 receptor were grown overnight in liquid SD-LUT medium to an unsaturated concentration (i.e. the cells were still dividing and had not yet reached stationary phase). They were diluted in fresh medium to an optimal assay concentration and 90 μΐ, of yeast cells added to 96-well black polystyrene plates (Costar).
Compounds, dissolved in DMSO and diluted in a 10% DMSO solution to 10X concentration, were added to the plates and the plates placed at 30°C for 4 h. After 4 h, the substrate for the β-galactosidase was added to each well. In these experiments, Fluorescein di (β-D- galactopyranoside) was used (FDG), a substrate for the enzyme that releases fluorescein, allowing a fluorimetric read-out. 20 μΐ^ per well of 500μΜ FDG/2.5% Triton XI 00 was added (the detergent was necessary to render the cells permeable). After incubation of the cells with the substrate for 60 min, 20 μΐ, per well of 1M sodium carbonate was added to terminate the reaction and enhance the fluorescent signal. The plates were then read in a fluorimeter at 485/535nm.
A number of representative examples of the compounds of the invention, as well as pharmaceutically acceptable salts thereof, were tested and found to have activity in this assay, giving an increase in fluorescent signal of at least ~ 1.5 -fold that of the background signal (i.e. the signal obtained in the presence of 1% DMSO without compound); some of the examples gave an increase of at least 5 -fold. It was found that some of the examples tested were found to have a human yeast IC50 value of less than 1 μΜ; other examples to have an IC50 value of less than 10μΜ. On the basis of this data, and the additional data given below, it is expected that all of the compounds of the invention have at least comparable activity. cAMP Assay
A stable cell line expressing recombinant human GPR119 was established and this cell line was used to investigate the effect of compounds of the invention on intracellular levels of cyclic AMP (cAMP). The cell monolayers were washed with phosphate buffered saline and stimulated at 37°C for 30 min with various concentrations of compound in stimulation buffer plus 1% DMSO. Cells were then lysed and cAMP content determined using the Perkin Elmer AlphaScreen™ (Amplified Luminescent Proximity Homogeneous Assay) cAMP kit. Buffers and assay conditions were as described in the manufacturer's protocol.
A number of representative examples of compounds of the invention were tested and found to produce a concentration-dependent increase in intracellular cAMP levels and generally had an EC50 of <10 μΜ; some of the examples showed an EC50 of less than 1 μΜ in the cAMP assay.
DPP-IV Assay Method
DPP-IV activity was measured by monitoring the cleavage of the fluorogenic peptide substrate, H-Gly-Pro-7-amino-4-methylcoumarin (GP-AMC) whereby the product 7-amino- 4-methylcoumarin is quantified by fluorescence at excitation 380 nm and emission 460 nm. Assays were carried out in 96-well plates (Black OptiPlate-96F) in a total volume of 100 per well consisting of 50 mM Tris pH 7.6, 100 μΜ GP-AMC, 10-25 μΙΙ recombinant human DPP-IV and a range of inhibitor dilutions in a final concentration of 1% DMSO. Plates were read in a fluorimeter after 30 min incubation at 37°C. Recombinant human DPP-IV residues Asn29-Pro766 was purchased from BioMol.
All of Examples 1 to 287 above were tested and found to show activity in this assay having an IC50 of <20 μΜ. Some of the examples were found to have a DPP-IV EC50 value of less than 1 μΜ; others an EC50 value of less than 20μΜ. Activities of a representative group of compounds that were tested in the human yeast assay and the DPP-IV assay are shown in Table 1 below:
Table 1.
Figure imgf000349_0001
Activities of a representative group of compounds that were tested in the cAMP assay and the DPP-IV assay are shown in Table 2 below:
Table 2.
Example No. cAMP ECso cAMP ECso DPP-IV ICso DPP-IV ICso
<1μΜ between ΙμΜ <1μΜ between ΙμΜ
and 10μΜ and 20μΜ
109 + +
110 + +
112 + +
115 + +
124 + +
128 + +
130 + +
131 + +
133 + +
135 + +
140 + + Example No. cAMP ECso cAMP ECso DPP-IV ICso DPP-IV ICso
<1μΜ between ΙμΜ <1μΜ between ΙμΜ
and ΙΟμΜ and 20μΜ
158 + +
175 + +
176 + +
196 + +
197 + +
198 + +
200 + +
218 + +
223 + +
235 + +
242 + +
249 + +
280 + +
Metabolites
Metabolites of compounds of the invention can be identified through incubation in liver microsomes:
Compounds of interest are incubated at a concentration of 5 μΜ for 60 minutes at 37°C in rat, liver or human microsomes. A T=0 compound incubation is also prepared to determine the levels of parent prior to any metabolism. A matrix control is prepared to determine which compounds are matrix constituents, as well as a thermal stability control to ensure that any metabolites observed in the compound incubation are not a product of thermal instability. All solutions are extracted into MeCN and analysed by LC/MSMS with UV detection. Further MSMS analysis is performed for confirmation and structural elucidation of detected metabolites.
For example, Compound 1 below can be identified as a metabolite of Example 38 via this method. Compound 1 was synthesized and found to have an EC50 in the GPR119 cAMP assay of 9μΜ and an IC50 in the DPP-IV assay of <1 μΜ. Compound 1 : 4-((5)-l-{2 (3i?,4lS)-3-Amino-4-(2,4,5-trifluoro-phenyl)-pyrrolidin-l-yl]- pyrimidin-5-yloxy} -ethyl)-piperidine- 1 -carboxylic acid propionyl-amide
Figure imgf000351_0001
Anti-diabetic effects of compounds of the invention in an in-vitro model of pancreatic beta cells (HIT-T15)
Cell Culture
HIT-T15 cells (passage 60) were obtained from ATCC, and were cultured in
RPMI1640 medium supplemented with 10% fetal calf serum and 30 nM sodium selenite. All experiments were done with cells at less than passage 70, in accordance with the literature, which describes altered properties of this cell line at passage numbers above 81 (Zhang HJ, Walseth TF, Robertson RP. Insulin secretion and cAMP metabolism in HIT cells. Reciprocal and serial passage-dependent relationships. Diabetes. 1989 Jan;38(l):44-8). cAMP assay
HIT-T15 cells were plated in standard culture medium in 96-well plates at 100,000 cells/ 0.1 mlV well and cultured for 24 h and the medium was then discarded. Cells were incubated for 15min at room temperature with ΙΟΟμΙ stimulation buffer (Hanks buffered salt solution, 5mM HEPES, 0.5mM IBMX, 0.1% BSA, pH 7.4). This was discarded and replaced with compound dilutions over the range 0.001, 0.003, 0.01, 0.03, 0.1, 0.3, 1, 3, 10, 30 μΜ in stimulation buffer in the presence of 0.5% DMSO. Cells were incubated at room temperature for 30 min. Then 75 uL lysis buffer (5mM HEPES, 0.3% Tween-20, 0.1% BSA, pH 7.4) was added per well and the plate was shaken at 900 rpm for 20 min. Particulate matter was removed by centrifugation at 3000rpm for 5 min, then the samples were transferred in duplicate to 384-well plates, and processed following the Perkin Elmer AlphaScreen cAMP assay kit instructions. Briefly 25 reactions were set up containing 8 μΐ, sample, 5 μΐ, acceptor bead mix and 12 μΕ detection mix, such that the concentration of the final reaction components is the same as stated in the kit instructions. Reactions were incubated at room temperature for 150 min, and the plate was read using a Packard Fusion instrument.
Measurements for cAMP were compared to a standard curve of known cAMP amounts (0.01, 0.03, 0.1, 0.3, 1, 3, 10, 30, 100, 300, 1000 nM) to convert the readings to absolute cAMP amounts. Data was analysed using XLfit 3 software.
Representative compounds of the invention were found to increase cAMP at an EC50 of less than 10 μΜ. Compounds showing an EC50 of less than 1 μΜ in the cAMP assay may be preferred. Insulin secretion assay
HIT-T15 cells are plated in standard culture medium in 12-well plates at 106 cells/ 1 ml/ well and cultured for 3 days and the medium then discarded. Cells are washed x 2 with supplemented Krebs-Ringer buffer (KRB) containing 119 mM NaCl, 4.74 mM KC1, 2.54 mM CaCl2, 1.19 mM MgS04, 1.19 mM KH2P04, 25 mM NaHC03, 10 mM HEPES at pH 7.4 and 0.1% bovine serum albumin. Cells are incubated with 1ml KRB at 37°C for 30 min which is then discarded. This is followed by a second incubation with KRB for 30 min, which is collected and used to measure basal insulin secretion levels for each well.
Compound dilutions (0, 0.1, 0.3, 1, 3, 10 μΜ) are then added to duplicate wells in 1ml KRB, supplemented with 5.6 mM glucose. After 30 min incubation at 37°C samples are removed for determination of insulin levels. Measurement of insulin was done using the Mercodia Rat insulin ELISA kit, following the manufacturers' instructions, with a standard curve of known insulin concentrations. For each well, insulin levels are corrected by subtraction of the basal secretion level from the pre-incubation in the absence of glucose. Data is analysed using XLfit 3 software.
Compounds of the invention preferably increase insulin secretion at an EC50 of less than 10 μΜ.
Oral Glucose Tolerance Tests
The effects of compounds of the invention on oral glucose (Glc) tolerance may be evaluated in male Sprague-Dawley rats. Food is withdrawn 16 h before administration of Glc and remains withdrawn throughout the study. Rats have free access to water during the study. A cut is made to the animals' tails, then blood (1 drop) is removed for measurement of basal Glc levels 60 min before administration of the Glc load. Then, the rats are weighed and dosed orally with test compound or vehicle (20% aqueous hydroxypropyl-y^- cyclodextrin) 45 min before the removal of an additional blood sample and treatment with the Glc load (2 g kg 1 p.o.). Blood samples are taken from the cut tip of the tail 5, 15, 30, 60, 120, and 180 min after Glc administration. Blood glucose levels are measured just after collection using a commercially available glucose-meter (OneTouch® UltraTM from
Lifescan). Compounds of the invention preferably statistically reduce the Glc excursion at doses <100 mg kg-1.
The effects of compounds of the invention on oral glucose (Glc) tolerance were evaluated in male C57B1/6 mice or male DIO C57BL/6J mice or male oblob mice. Food was withdrawn 5 h before administration of Glc and remained withdrawn throughout the study. Mice had free access to water during the study. A cut was made to the animals' tails, then blood (20 was removed for measurement of basal Glc levels 45 min before
administration of the Glc load. Then, the mice were weighed and dosed orally with test compound or vehicle (20% aqueous hydroxypropyl-y^-cyclodextrin or 25% aqueous Gelucire 44/14) 30 min before the removal of an additional blood sample (20
Figure imgf000353_0001
and treatment with the Glc load (2-5 g kg 1 p.o.). Blood samples (20 uL) were then taken 25, 50, 80, 120, and 180 min after Glc administration. The 20
Figure imgf000353_0002
blood samples for measurement of Glc levels were taken from the cut tip of the tail into disposable micro-pipettes (Dade Diagnostics Inc., Puerto Rico) and the sample added to 480 iL of haemolysis reagent. Duplicate 20 μΐ, aliquots of the diluted haemolysed blood were then added to 180 iL of Trinders glucose reagent (Sigma enzymatic (Trinder) colorimetric method) in a 96-well assay plate. After mixing, the samples were left at room temperature for 30 min before being read against Glc standards (Sigma glucose/urea nitrogen combined standard set). Compounds of the invention statistically reduced the Glc excursion at doses <100 mg kg-1. Example 16 (30 mpk po) was evaluated in an oral glucose tolerance test in male DIO
C57BL/6J mice. Reactive blood glucouse AUC (0-120 min) was reduced by 44% (p=0.002) relative to vehicle (20%> aqueous hydroxypropyl-y5-cyclodextrin).

Claims

A compound of formula (I) or a pharmaceutically acceptable salt thereof:
Figure imgf000354_0001
(I) wherein A is a para-substituted phenyl or a para-substituted 6-membered heteroaryl ring containing one to three nitrogen atoms;
R1 is hydrogen, halo, cyano, Ci _4alkyl, Ci .4 haloalkyl, Ci .4 alkoxy or C2- galkoxyalkyl;
2 is:
Figure imgf000354_0002
s phenyl optionally substituted by one or more halo, methyl, halomethyl or methoxy groups, or pyridyl, N-pyridonyl or N-pyrazolyl, optionally substituted by one or more halo, C\ .2 alkyl or halomethyl groups,
R^ is independently halo, methyl or halomethyl;
Z is -C(0)OR4, -C(0)R4 , -S(0)2R4 , -S(0)2N(C1.3alkyl)R4, heteroaryl or
-CH2-heteroaryl, and when p and q are both 0, Z can also be -CH2-phenyl, which phenyl is optionally substituted by one or two groups independently selected from Ci .4 alkyl,
C\ .4 haloalkyl and halo;
R4 is aryl, heteroaryl, C2-6alkyl, C3_6cycloalkyl, C4_6heterocyclyl, heterocyclylCi . 4alkyl, C2-6alkoxyalkyl, arylCi _4alkyl, heteroarylCj .4 alkyl or C4_ cycloalkylCi _4alkyl, which cycloalkylCi _4alkyl is optionally substituted by C\ .4 alkyl; wherein when Z is or includes heteroaryl or when R^ is or includes aryl or heteroaryl, said aryl or heteroaryl may optionally be substituted by one or two groups selected from halo, cyano, SF5,
C 1 .4 alkyl, C i _4haloalkyl, C 1 .5 hydroxyalkyl, Ci _4alkoxy, C2-4alkoxyalkyl, heterocyclyl, heterocyclylC 1 .4 alkyl, heteroarylCi _4alkyl, Ci _4alkylamino, Ci _4alkylaminoC 1 .4 alkyl, C3.
6 cycloalkyl and -(C\ .3 alkyl)-(C3_6 cycloalkyl), wherein the cycloalkyl and alkyl groups are each optionally substituted by one or two groups independently selected from Ci .4 alkyl, hydroxy or halo;
X is selected from CR5H, O, and NR6 in which R5 and R6 are independently hydrogen or Ci _2alkyl;
Y is γΐ or W-γΙ, where W is a 5 membered heteroaryl ring containing one or more heteroatoms selected from N, O and S, and γΐ is selected from CR7H, O and NR8, in which R7 is hydrogen, Ci _2alkyl,C2-6alkoxyalkyl or heterocyclyl; wherein said C i _2alkyl can be optionally substituted by cyano, hydroxy or halo and R8 is C\ _4alkyl or C\ _4cycloalkyl, provided that when Y is W-Y1, X is O and Y1 is CR7H, when Y1 is O or NR8, X is CR5H and when X is O or NR6, Y1 is CR7H;
each of R^ and R^ is independently H, halo, C\ _2alky, C i _2haloalkyl,
C\ _3alkoxy or hydroxy; or R9 and RIO are joined to form an azabicyclo[3.3.1]nonane, a 3-oxa-
7-azabicyclo[3.3.1]nonane or an azabicyclo[3.2.1]octane;
R11 is H, halo, C\ _2alkyl, C\ _2haloalkyl or C\ _3alkoxy;
m is 0, 1 or 2;
n is 0 or 1 ;
p and q are each 0, 1 or 2, provided that 0 < p+q < 2; and
r is 1 or 2.
2. A compound as claimed in claim 1, wherein the compound has the stereochemistry defined below (compounds of formula (la)):
Figure imgf000356_0001
(la).
3. A compound as claimed in claim 1 or claim 2, wherein p and q are independently 0, 1 or 2 provided that p+q does not exceed 2.
4. A compound as claimed in claim 3, wherein p and q are the same as one another.
5. A compound as claimed in claim 3, wherein p and q are both 1.
6. A compound as claimed in any preceding claim, wherein Y is γΐ .
7. A compound as claimed in claim 6, wherein γΐ is O and X is CR^H.
8. A compound as claimed in any of claims 1-6, wherein Y is γΐ, X is O and γΐ is CR7H.
9. A compound as claimed in claim 8, which has the formula (lb):
Figure imgf000356_0002
(lb).
10. A compound as claimed in any of claims 1-5, wherein Y is W-Y^ , and γΐ is CR^H bonded directly to X.
1 1. A compound as claimed in claim 10, wherein X is O.
12. A compound as claimed in claim 10 or 1 1 , wherein W is oxadiazolyl.
13. A compound as claimed in claim 12, which has the formula (Ic):
Figure imgf000357_0001
14. A compound as claimed in any preceding claim, wherein A is selected from pyridine, pyrimidine, pyrazine and pyridazine.
15. A compound as claimed in claim 14, wherein A is 2- or 3-pyridyl or 2- or 5-pyrimidinyl, where the 2-, 3- or 5- refers to the point of attachment of the pyrrolidine or piperidine ring.
16. A compound as claimed in any of claims 9 to 13, wherein A is selected from:
Figure imgf000357_0002
17. A compound as claimed in any preceding claim, wherein Z is -C(0)OR4., -C(0)R4, -S(0)2R4 or -S(0)2N(Ci_3alkyl)R4.
18. A compound as claimed in claim 17, wherein R^ is selected from C2-6alkyl,
C4_5alkoxyalkyl, C3_6cycloalkyl and C4_ cycloalkylC j .4 alkyl, wherein said cycloalkylalkyl is optionally substituted by C\ _4alkyl.
19. A compound as claimed in claim 18, wherein R4 is propyl or isopropyl.
20. A compound as claimed in any of claims 1 -16, wherein Z is a heteroaryl or
-CH2-heteroaryl group that is unsubstituted or substituted by one or two groups selected from
SF5, C 1 .4 alkyl, C i _4haloalkyl, C 1 .5 hydroxyalkyl, C2-4alkoxyalkyl, C3_6cycloalkyl,
-(C i _3alkyl)-(C3_6cycloalkyl), heterocyclyl, heterocyclylC 1 .4 alkyl, heteroarylCi _4alkyl,
C\ _4alkylamino, C \ _4alkylaminoC j .4 alkyl, cyano and halogen; wherein the cycloalkyl and alkyl groups are each optionally substituted by one or two groups independently selected from C\ .4 alkyl, hydroxy or halo.
21. A compound as claimed in claim 20, wherein Z is a heteroaryl group selected from oxadiazole, pyrimidine, pyridazine, thiazole, tetrazole, benzothiazole and thiadiazole.
22. A compound as claimed in claim 20 or claim 21 , wherein Z is l ,2,4-oxadiazol-3-yl, l ,2,4-oxadiazol-5-yl or pyrimidin-2-yl.
23. A compound as claimed in claim 22, wherein Z is l ,2,4-oxadiazol-3-yl or
l ,2,4-oxadiazol-5-yl that is substituted by Ci _4alkyl, Ci _4 haloalkyl, C 1 .5 hydroxyalkyl,
Cl-3 hydroxyalkyl, C2-4 alkoxyalkyl or heterocyclyl.
24. A compound as claimed in claim 22, wherein Z is pyrimidin-2-yl that is unsubstituted or substituted with one or more halo groups.
25. A compound as claimed in any of claims 1 -16, wherein Z is -CH2-phenyl, wherein the phenyl is unsubstituted or substituted by one or two groups independently selected
from C \ .4 alkyl, Ci _4haloalkyl and halo.
A compound as claimed in any of claims 1 -25, wherein R^is H or C\ _2alkyl.
27. A compound as claimed in any of claims 1 -25, wherein R^is H.
28. A compound as claimed in any preceding claim, wherein R^ is unsubstituted or substituted phenyl, pyridyl, N-pyrazolyl or N-pyridonyl.
29. A compound as claimed in claim 28, wherein R^ is phenyl substituted by one, two or three halo groups, or when W is a 5 membered heteroaryl ring, R^ may be unsubstituted phenyl or phenyl substituted by one or more halo, methyl or halomethyl groups.
30. A compound as claimed in claim 28, wherein R^ is pyridyl, N-pyrazolyl or N-pyridonyl substituted by one, two or three halo, methyl or methoxy groups.
31. A compound as claimed in any preceding claim, wherein R^ is H or C\ _2alkyl.
32. A compound as claimed in any of claims 17-19, wherein R^ is C\ _2alkyl and R^ is phenyl that is unsubstituted or substituted by one or more halo, methyl or halomethyl groups.
33. A compound as claimed in claim 25, wherein R^ is phenyl that is unsubstituted or substituted by one or more halo, methyl or halomethyl groups.
34. A compound as claimed in any preceding claim, wherein R^ hydrogen or methyl.
35. A compound as claimed in any preceding claim, wherein R^ is hydrogen.
36. A compound as claimed in any preceding claim, wherein R$ is methyl.
37. A compound as claimed in any preceding claim, wherein R11 is H, halo or alkoxy.
38. A compound as claimed in any preceding claim, wherein R9 and RIO are the same as one another.
39. A compound as claimed in claim 38, wherein R^ and R^ are both H.
40. A compound as claimed in any preceding claim, wherein p (or q) is 2 and the two R^ (or RlO) groups are the same as one another.
41. A compound as claimed in claim 40, wherein one of R^ (or RlO) is other than H and the other one is H.
42. A compound according to any of Examples 1-287 or a pharmaceutically acceptable salt thereof.
43. A compound of formula (Id) or a pharmaceutically acceptable salt thereof:
Figure imgf000360_0001
wherein A, R1 to R11, X, Y, m, n, p, q and r are as defined in claim 1;
Z is -C(0)R12; and
R12 is -NHC(0)R13 or -NHC(NH)R13, in which R13 is selected from C 1.4 alkyl, Ci _4haloalkyl, C 1 .5 hydroxyalkyl, Ci _4alkoxy, C2_4alkoxyalkyl, heterocyclyl,
heterocyclylC 1 .4 alkyl, heteroarylCi _4alkyl, C3_6cycloalkyl and
-(Ci .3 alkyl)-(C3_ cycloalkyl), wherein the cycloalkyl and alkyl groups are each optionally substituted by one or two groups independently selected from Ci .4 alkyl, hydroxy or halo.
44. A compound as claimed in claim 43, wherein R^3 is C\ .4 alkyl.
45. A compound as claimed in claim 43 or claim 44, wherein γΐ is CR^H, where R^ is C\ .2 alkyl.
46. A compound as claimed in any of claims 1-45, or a pharmaceutically acceptable salt thereof, for use in the treatment of the human or animal body by therapy.
47. A compound as claimed in any of claims 1-45, or a pharmaceutically acceptable salt thereof, for use in the treatment or prevention of diabetes.
48. A compound as claimed in any of claims 1-45, or a pharmaceutically acceptable salt thereof, for use in the treatment or prevention of obesity, metabolic syndrome (syndrome X), impaired glucose tolerance, hyperlipidemia, hypertriglyceridemia, hypercholesterolemia, low HDL levels or hypertension.
49. A pharmaceutical formulation or composition comprising a compound as claimed in any of claims 1-45 and a pharmaceutically acceptable carrier therefor.
50. A method of treating or preventing diabetes, e.g. type II diabetes, comprising
administering to a human or non-human animal in need thereof an effective amount of a compound as claimed in any of claims 1-45 or a pharmaceutically acceptable salt thereof, or a composition or formulation as claimed in claim 49.
51. A method for the treatment of obesity, metabolic syndrome (syndrome X), impaired glucose tolerance, hyperlipidemia, hypertriglyceridemia, hypercholesterolemia, low HDL levels or hypertension comprising a step of administering to a human or non-human animal in need thereof an effective amount of a compound according to any one of claims 1 to 45 or a pharmaceutically acceptable salt thereof, or a composition or formulation as claimed in claim 49.
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