WO2007023461A3 - Methode de detection de micro-organismes et de marqueurs de resistance aux antibiotiques et oligonucléotides d'acides nucleiques a cet effet - Google Patents

Methode de detection de micro-organismes et de marqueurs de resistance aux antibiotiques et oligonucléotides d'acides nucleiques a cet effet Download PDF

Info

Publication number
WO2007023461A3
WO2007023461A3 PCT/IB2006/052919 IB2006052919W WO2007023461A3 WO 2007023461 A3 WO2007023461 A3 WO 2007023461A3 IB 2006052919 W IB2006052919 W IB 2006052919W WO 2007023461 A3 WO2007023461 A3 WO 2007023461A3
Authority
WO
WIPO (PCT)
Prior art keywords
organisms
micro
nucleic acid
antibiotic resistance
detection
Prior art date
Application number
PCT/IB2006/052919
Other languages
English (en)
Other versions
WO2007023461A2 (fr
Inventor
Gerd Luedke
Johannes Bacher
Jens-Peter Seher
Holger Engel
Juergen Lauber
Andre Bahr
Helge Lubenow
Original Assignee
Philips Intellectual Property
Koninkl Philips Electronics Nv
Gerd Luedke
Johannes Bacher
Jens-Peter Seher
Holger Engel
Juergen Lauber
Andre Bahr
Helge Lubenow
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Philips Intellectual Property, Koninkl Philips Electronics Nv, Gerd Luedke, Johannes Bacher, Jens-Peter Seher, Holger Engel, Juergen Lauber, Andre Bahr, Helge Lubenow filed Critical Philips Intellectual Property
Priority to JP2008527574A priority Critical patent/JP2009505651A/ja
Publication of WO2007023461A2 publication Critical patent/WO2007023461A2/fr
Publication of WO2007023461A3 publication Critical patent/WO2007023461A3/fr

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/16Primer sets for multiplex assays

Abstract

L'invention porte sur des méthodes de détection de micro-organismes et/ou de marqueurs de résistance aux antibiotiques dans un échantillon consistant à y identifier la présence de régions distinctes d'acides nucléiques. L'invention porte également sur des amorces et sondes utilisées dans ladite méthode.
PCT/IB2006/052919 2005-08-26 2006-08-23 Methode de detection de micro-organismes et de marqueurs de resistance aux antibiotiques et oligonucléotides d'acides nucleiques a cet effet WO2007023461A2 (fr)

Priority Applications (1)

Application Number Priority Date Filing Date Title
JP2008527574A JP2009505651A (ja) 2005-08-26 2006-08-23 微生物および抗生物質耐性マーカーの検出の方法およびそのための核酸オリゴヌクレオチド

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
EP05107867 2005-08-26
EP05107867.3 2005-08-26

Publications (2)

Publication Number Publication Date
WO2007023461A2 WO2007023461A2 (fr) 2007-03-01
WO2007023461A3 true WO2007023461A3 (fr) 2008-01-03

Family

ID=37772009

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/IB2006/052919 WO2007023461A2 (fr) 2005-08-26 2006-08-23 Methode de detection de micro-organismes et de marqueurs de resistance aux antibiotiques et oligonucléotides d'acides nucleiques a cet effet

Country Status (3)

Country Link
JP (1) JP2009505651A (fr)
CN (1) CN101248190A (fr)
WO (1) WO2007023461A2 (fr)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8883423B2 (en) 2010-10-22 2014-11-11 T2 Biosystems, Inc. NMR systems and methods for the rapid detection of analytes

Families Citing this family (27)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2348042A1 (fr) 2001-06-04 2002-12-04 Ann Huletsky Sequences permettant de detecter et d'identifier des staphylococcus aureus resistant a la meticilline
US11834720B2 (en) 2005-10-11 2023-12-05 Geneohm Sciences, Inc. Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) of MREJ types xi to xx
WO2008051285A2 (fr) 2006-04-01 2008-05-02 Medical Service Consultation International, Llc Procédés et compositions de détection de champignons et de mycotoxines
EP1978111B1 (fr) 2007-04-02 2013-03-27 Gen-Probe Incorporated Compositions, kits et procédés associés pour la détection et/ou la surveillance de Pseudomonas aeruginosa
US8017337B2 (en) 2007-04-19 2011-09-13 Molecular Detection, Inc. Methods, compositions and kits for detection and analysis of antibiotic-resistant bacteria
ATE525483T1 (de) * 2007-07-30 2011-10-15 Univ Ulm Oligonukleotidsonde und verfahren zum nachweis oder zur unterscheidung von mikroorganismen in einer probe
WO2009086218A2 (fr) * 2007-12-21 2009-07-09 Gen-Probe Incorporated Détection de microorganismes antibiorésistants
AU2012202811B2 (en) * 2007-12-26 2014-02-13 Gen-Probe Incorporated Compositions and methods to detect Candida albicans nucleic acid
WO2009085704A2 (fr) * 2007-12-26 2009-07-09 Gen-Probe Incorporated Compositions et procédés permettant de détecter l'acide nucléique du candida albicans
FI121884B (fi) 2008-01-17 2011-05-31 Mobidiag Oy Menetelmä metisilliiniresistenttien stafylokokkien havaitsemiseksi ja tunnistamiseksi sekä menetelmään tarkoitettu koetin ja testipakkaus
US20100068718A1 (en) * 2008-08-22 2010-03-18 Hooper Dennis G Methods and Compositions for Identifying Yeast
FI20095544A0 (fi) * 2009-05-15 2009-05-15 Juha Kirveskari Menetelmä ja kitti antibioottiresistenttien bakteerien tunnistusta varten
EP2473639A2 (fr) * 2009-09-04 2012-07-11 Intelligent Medical Devices, Inc. SONDES AT AMORCES OPTIMISÉES ET LEURS PROCÉDÉS D'UTILISATION POUR LA DÉTECTION, LE CRIBLAGE, L'ISOLATION ET LE SÉQUENCAGE DE SARM, SASM, MARQEURS DE STAPHYLOCOCCUS ET DU GÈNE DE RESISTANCE AUX ANTIBIOTIQUES mecA
US20110200995A1 (en) * 2009-09-04 2011-08-18 Intelligent Medical Devices, Inc. Optimized probes and primers and methods of using same for the detection, screening, isolation and sequencing of vancomycin resistance genes and vancomycin resistant enterococci
US8962251B2 (en) 2009-10-08 2015-02-24 Medical Service Consultation International, Llc Methods and compositions for identifying sulfur and iron modifying bacteria
CN101880728B (zh) * 2010-07-29 2012-03-21 河南农业大学 一种肠球菌属多重pcr检测引物
ES2576927T3 (es) 2010-10-22 2016-07-12 T2 Biosystems, Inc. Sistemas de RMN y métodos para la detección rápida de analitos
WO2013158281A1 (fr) 2012-04-20 2013-10-24 T2 Biosystems, Inc. Compositions et procédés de détection d'espèces de candida
CN102952881B (zh) * 2012-10-25 2014-02-26 浙江省淡水水产研究所 一种阴沟肠杆菌特异性pcr检测引物
US8956821B2 (en) 2013-02-06 2015-02-17 Medical Service Consultation International, Llc Methods and compositions for detecting Aspergillus terreus, Aspergillus niger, and mycotoxins
AU2016321328A1 (en) 2015-09-09 2018-04-26 Psomagen, Inc. Method and system for microbiome-derived diagnostics and therapeutics infectious disease and other health conditions associated with antibiotic usage
WO2017127731A1 (fr) 2016-01-21 2017-07-27 T2 Biosystems, Inc. Méthodes et systèmes de détection rapide de bactéries
CA3021793A1 (fr) 2016-04-21 2017-10-26 Naked Biome, Inc. Compositions et methodes pour le traitement de troubles cutanes
CA3027951A1 (fr) * 2016-06-15 2017-12-21 Genecapture, Inc. Compositions, procedes et dispositifs comprenant des molecules-capteurs a boucle-tige
WO2019079612A1 (fr) * 2017-10-20 2019-04-25 Naked Biome, Inc. Systèmes et méthodes de détection bactérienne et de traitement
EP3599283A1 (fr) * 2018-07-25 2020-01-29 Blue DNA Companion Procédé d'évaluation de la pollution fécale dans de l'eau
CN113502354A (zh) * 2021-07-14 2021-10-15 中国医学科学院输血研究所 一种用于移植患者感染的病原体检测引物和探针组、试剂盒及应用

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2000052203A2 (fr) * 1999-03-02 2000-09-08 King's College London Identification de bacteries
US6512105B1 (en) * 1986-11-24 2003-01-28 Gen-Probe Incorporated Methods for making oligonucleotide probes for the detection and/or quantitation of non-viral organisms
US20050079490A1 (en) * 1999-12-23 2005-04-14 Roche Diagnostics Corporation Method for quickly detecting microbial dna/rna, kit therefor and the use of said method

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6512105B1 (en) * 1986-11-24 2003-01-28 Gen-Probe Incorporated Methods for making oligonucleotide probes for the detection and/or quantitation of non-viral organisms
WO2000052203A2 (fr) * 1999-03-02 2000-09-08 King's College London Identification de bacteries
US20050079490A1 (en) * 1999-12-23 2005-04-14 Roche Diagnostics Corporation Method for quickly detecting microbial dna/rna, kit therefor and the use of said method

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
DE VRIES JOHANN ET AL: "Spread of recombinant DNA by roots and pollen of transgenic potato plants, identified by highly specific biomonitoring using natural transformation of an Acinetobacter sp.", APPLIED AND ENVIRONMENTAL MICROBIOLOGY AUG 2003, vol. 69, no. 8, August 2003 (2003-08-01), pages 4455 - 4462, XP002445290, ISSN: 0099-2240 *
MITTERER G ET AL: "Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences", JOURNAL OF CLINICAL MICROBIOLOGY, WASHINGTON, DC, US, vol. 42, no. 3, March 2004 (2004-03-01), pages 1048 - 1057, XP002363929, ISSN: 0095-1137 *

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US8883423B2 (en) 2010-10-22 2014-11-11 T2 Biosystems, Inc. NMR systems and methods for the rapid detection of analytes
US9360457B2 (en) 2010-10-22 2016-06-07 T2 Biosystems, Inc. NMR systems and methods for the rapid detection of analytes

Also Published As

Publication number Publication date
JP2009505651A (ja) 2009-02-12
CN101248190A (zh) 2008-08-20
WO2007023461A2 (fr) 2007-03-01

Similar Documents

Publication Publication Date Title
WO2007023461A3 (fr) Methode de detection de micro-organismes et de marqueurs de resistance aux antibiotiques et oligonucléotides d'acides nucleiques a cet effet
WO2006117161A3 (fr) Nouvelles strategies d'etiquetage pour detection sensible d'analytes
WO2006119326A3 (fr) Compositions de sondes/amorces oligonucleotidiques et procedes de detection de polynucleotides
WO2005043127A3 (fr) Sondes fluorescentes pour la detection d'adn par hybridation a sensibilite amelioree et bruit de fond faible
WO2006078289A3 (fr) Detection d'analytes cibles fondee sur des codes a barres biologiques
WO2006079049A3 (fr) Procedes et compositions pour detection a plage dynamique augmentee de molecules d'acide nucleique
WO2006020579A3 (fr) Procede d'identification rapide de micro-organismes
WO2006071241A3 (fr) Compositions destinees a l'identification de bacteries
WO2007106899A3 (fr) Système et méthode pour la détection de mutations dans des polynucléotides jak2
EP1978366A4 (fr) Etiquette fluorescente pour un biomatériau et procédé d'étiquetage fluorescent de biomatériau
WO2007116298A3 (fr) Détection d'acides nucléiques au moyen de procédés à écoulement latéral
WO2009039549A3 (fr) Procédé de détermination de micro-organismes
WO2007133704A3 (fr) Dosage par code -barres biologique non basé sur des acides nucléiques pour détecter des matériaux biologiques
WO2007014305A3 (fr) Analyses determinant la resistance a des medicaments de la classe des echinocandines
WO2009007719A3 (fr) Détection améliorée de micro-organismes
WO2007056398A3 (fr) Séquences d'oligonucléotides specifiques à chlamydia trachomatis
WO2004083819A3 (fr) Marqueur moleculaire d'echantillon medico-legal
WO2004104211A3 (fr) Procede de detection de cyanobacteries toxiques et non toxiques
WO2005090596A3 (fr) Dosage pour la detection et l'identification de micro-organismes
WO2008054432A3 (fr) Micropuce oligonucléotidique destinée à l'identification d'agents pathogènes
WO2006066369A3 (fr) Procede et kit d'identification et/ou de detection et/ou de quantification d'un nombre eleve de genes relatifs a la resistance antibiotique dans les (micro)organismes
WO2005074522A3 (fr) Detection d'adn de ruminants par pcr
WO2004046375A3 (fr) Methode de detection de micro-organismes dans des produits pharmaceutiques
WO2005031004A3 (fr) Procede de detection specifique rapide de micro-organismes nocifs pour les boissons
WO2006137939A3 (fr) Compositions et methode de detection de streptocoques du groupe a

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application
WWE Wipo information: entry into national phase

Ref document number: 2008527574

Country of ref document: JP

Ref document number: 200680030887.2

Country of ref document: CN

WWE Wipo information: entry into national phase

Ref document number: 942/CHENP/2008

Country of ref document: IN

NENP Non-entry into the national phase

Ref country code: DE

122 Ep: pct application non-entry in european phase

Ref document number: 06795746

Country of ref document: EP

Kind code of ref document: A2