WO2005098047A3 - Compositions for use in identification of bacteria - Google Patents
Compositions for use in identification of bacteria Download PDFInfo
- Publication number
- WO2005098047A3 WO2005098047A3 PCT/US2005/005356 US2005005356W WO2005098047A3 WO 2005098047 A3 WO2005098047 A3 WO 2005098047A3 US 2005005356 W US2005005356 W US 2005005356W WO 2005098047 A3 WO2005098047 A3 WO 2005098047A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- bacteria
- compositions
- identification
- amplification
- segment
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
Abstract
Applications Claiming Priority (10)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US54542504P | 2004-02-18 | 2004-02-18 | |
US60/545,425 | 2004-02-18 | ||
US55975404P | 2004-04-05 | 2004-04-05 | |
US60/559,754 | 2004-04-05 | ||
US63286204P | 2004-12-03 | 2004-12-03 | |
US60/632,862 | 2004-12-03 | ||
US63906804P | 2004-12-22 | 2004-12-22 | |
US60/639,068 | 2004-12-22 | ||
US64818805P | 2005-01-28 | 2005-01-28 | |
US60/648,188 | 2005-01-28 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2005098047A2 WO2005098047A2 (en) | 2005-10-20 |
WO2005098047A3 true WO2005098047A3 (en) | 2007-10-04 |
Family
ID=35125687
Family Applications (2)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2005/006133 WO2006071241A2 (en) | 2004-02-18 | 2005-02-18 | Compositions for use in identification of bacteria |
PCT/US2005/005356 WO2005098047A2 (en) | 2004-02-18 | 2005-02-18 | Compositions for use in identification of bacteria |
Family Applications Before (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2005/006133 WO2006071241A2 (en) | 2004-02-18 | 2005-02-18 | Compositions for use in identification of bacteria |
Country Status (5)
Country | Link |
---|---|
EP (1) | EP1725686A4 (en) |
JP (1) | JP2007525978A (en) |
AU (2) | AU2005322640B2 (en) |
CA (1) | CA2560521C (en) |
WO (2) | WO2006071241A2 (en) |
Families Citing this family (47)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2009155061A2 (en) * | 2008-05-30 | 2009-12-23 | Ibis Biosciences, Inc. | Compositions for use in identification of strains of e. coli o157:h7 |
US20030027135A1 (en) | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
WO2004060278A2 (en) | 2002-12-06 | 2004-07-22 | Isis Pharmaceuticals, Inc. | Methods for rapid identification of pathogens in humans and animals |
US7666588B2 (en) | 2001-03-02 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy |
US20040121309A1 (en) | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues |
US7226739B2 (en) | 2001-03-02 | 2007-06-05 | Isis Pharmaceuticals, Inc | Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations |
CA2348042A1 (en) | 2001-06-04 | 2002-12-04 | Ann Huletsky | Sequences for detection and identification of methicillin-resistant staphylococcus aureus |
US7217510B2 (en) | 2001-06-26 | 2007-05-15 | Isis Pharmaceuticals, Inc. | Methods for providing bacterial bioagent characterizing information |
US8073627B2 (en) | 2001-06-26 | 2011-12-06 | Ibis Biosciences, Inc. | System for indentification of pathogens |
US8057993B2 (en) | 2003-04-26 | 2011-11-15 | Ibis Biosciences, Inc. | Methods for identification of coronaviruses |
US7964343B2 (en) | 2003-05-13 | 2011-06-21 | Ibis Biosciences, Inc. | Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
US8158354B2 (en) | 2003-05-13 | 2012-04-17 | Ibis Biosciences, Inc. | Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
US8546082B2 (en) | 2003-09-11 | 2013-10-01 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
US20120122099A1 (en) | 2003-09-11 | 2012-05-17 | Rangarajan Sampath | Compositions for use in identification of bacteria |
US8097416B2 (en) | 2003-09-11 | 2012-01-17 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
US7666592B2 (en) | 2004-02-18 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for concurrent identification and quantification of an unknown bioagent |
EP2458619B1 (en) | 2004-05-24 | 2017-08-02 | Ibis Biosciences, Inc. | Mass spectrometry with selective ion filtration by digital thresholding |
US20050266411A1 (en) | 2004-05-25 | 2005-12-01 | Hofstadler Steven A | Methods for rapid forensic analysis of mitochondrial DNA |
US7811753B2 (en) | 2004-07-14 | 2010-10-12 | Ibis Biosciences, Inc. | Methods for repairing degraded DNA |
WO2006135400A2 (en) | 2004-08-24 | 2006-12-21 | Isis Pharmaceuticals, Inc. | Methods for rapid identification of recombinant organisms |
US20060205040A1 (en) | 2005-03-03 | 2006-09-14 | Rangarajan Sampath | Compositions for use in identification of adventitious viruses |
US8084207B2 (en) | 2005-03-03 | 2011-12-27 | Ibis Bioscience, Inc. | Compositions for use in identification of papillomavirus |
AU2006272776B2 (en) | 2005-07-21 | 2012-01-19 | Ibis Biosciences, Inc. | Methods for rapid identification and quantitation of nucleic acid variants |
US11834720B2 (en) | 2005-10-11 | 2023-12-05 | Geneohm Sciences, Inc. | Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) of MREJ types xi to xx |
US20070134700A1 (en) * | 2005-11-21 | 2007-06-14 | Biosigma S.A. | Method and array for detection and identification of microorangisms present in a sample using the genomic regions coding for different tRNA synthetases |
AU2007353877B2 (en) | 2006-09-14 | 2012-07-19 | Ibis Biosciences, Inc. | Targeted whole genome amplification method for identification of pathogens |
JP5680304B2 (en) | 2007-02-23 | 2015-03-04 | アイビス バイオサイエンシズ インコーポレイティッド | Rapid forensic DNA analysis |
WO2008151023A2 (en) | 2007-06-01 | 2008-12-11 | Ibis Biosciences, Inc. | Methods and compositions for multiple displacement amplification of nucleic acids |
EP1997905A1 (en) * | 2007-06-01 | 2008-12-03 | Friesland Brands B.V. | Nucleic acid amplification |
US8148163B2 (en) | 2008-09-16 | 2012-04-03 | Ibis Biosciences, Inc. | Sample processing units, systems, and related methods |
EP2344893B1 (en) | 2008-09-16 | 2014-10-15 | Ibis Biosciences, Inc. | Microplate handling systems and methods |
EP2349549B1 (en) | 2008-09-16 | 2012-07-18 | Ibis Biosciences, Inc. | Mixing cartridges, mixing stations, and related kits, and system |
US20110183345A1 (en) * | 2008-10-03 | 2011-07-28 | Ibis Biosciences, Inc. | Compositions for use in identification of streptococcus pneumoniae |
EP2396803A4 (en) | 2009-02-12 | 2016-10-26 | Ibis Biosciences Inc | Ionization probe assemblies |
US9393564B2 (en) | 2009-03-30 | 2016-07-19 | Ibis Biosciences, Inc. | Bioagent detection systems, devices, and methods |
US8950604B2 (en) | 2009-07-17 | 2015-02-10 | Ibis Biosciences, Inc. | Lift and mount apparatus |
WO2011008972A1 (en) | 2009-07-17 | 2011-01-20 | Ibis Biosciences, Inc. | Systems for bioagent identification |
WO2011014811A1 (en) | 2009-07-31 | 2011-02-03 | Ibis Biosciences, Inc. | Capture primers and capture sequence linked solid supports for molecular diagnostic tests |
ES2628739T3 (en) | 2009-10-15 | 2017-08-03 | Ibis Biosciences, Inc. | Multiple displacement amplification |
WO2011112718A1 (en) | 2010-03-10 | 2011-09-15 | Ibis Biosciences, Inc. | Production of single-stranded circular nucleic acid |
US9068017B2 (en) | 2010-04-08 | 2015-06-30 | Ibis Biosciences, Inc. | Compositions and methods for inhibiting terminal transferase activity |
WO2013036603A1 (en) | 2011-09-06 | 2013-03-14 | Ibis Biosciences, Inc. | Sample preparation methods |
US9970061B2 (en) | 2011-12-27 | 2018-05-15 | Ibis Biosciences, Inc. | Bioagent detection oligonucleotides |
JP2013171343A (en) | 2012-02-17 | 2013-09-02 | Toshiba Corp | Storage device |
EP2901129A4 (en) | 2012-09-26 | 2016-11-02 | Ibis Biosciences Inc | Swab interface for a microfluidic device |
WO2020066795A1 (en) * | 2018-09-28 | 2020-04-02 | 学校法人慶應義塾 | Analysis method, spectrometry method and method for identifying organism |
RU2765495C1 (en) * | 2021-05-31 | 2022-01-31 | Федеральное казенное учреждение здравоохранения "Ростовский-на-Дону ордена Трудового Красного Знамени научно-исследовательский противочумный институт" Федеральной службы по надзору в сфере защиты прав потребителей и благополучия человека | Method for the determination of francisella tularensis subspecies by multi-primer pcr |
Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6613509B1 (en) * | 1999-03-22 | 2003-09-02 | Regents Of The University Of California | Determination of base (nucleotide) composition in DNA oligomers by mass spectrometry |
Family Cites Families (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5849492A (en) * | 1994-02-28 | 1998-12-15 | Phylogenetix Laboratories, Inc. | Method for rapid identification of prokaryotic and eukaryotic organisms |
US6503709B1 (en) * | 1997-07-03 | 2003-01-07 | Id Biomedical Corporation | Methods for rapidly detecting methicillin resistant staphylococci |
KR100395181B1 (en) * | 1997-08-26 | 2003-08-21 | 미츠비시 스미토모 실리콘 주식회사 | High-quality silicon single crystal and method of producing the same |
AU2001288393A1 (en) * | 2000-08-25 | 2002-03-04 | Illumina, Inc. | Probes and decoder oligonucleotides |
US20030027135A1 (en) * | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
US20040121309A1 (en) * | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues |
JP2003061665A (en) * | 2001-08-21 | 2003-03-04 | Yakult Bio-Science Foundation | Method for detecting spore forming bacterium |
-
2005
- 2005-02-18 WO PCT/US2005/006133 patent/WO2006071241A2/en active Application Filing
- 2005-02-18 JP JP2006554339A patent/JP2007525978A/en active Pending
- 2005-02-18 EP EP05856582A patent/EP1725686A4/en not_active Withdrawn
- 2005-02-18 CA CA2560521A patent/CA2560521C/en not_active Expired - Fee Related
- 2005-02-18 WO PCT/US2005/005356 patent/WO2005098047A2/en active Application Filing
- 2005-02-18 AU AU2005322640A patent/AU2005322640B2/en not_active Ceased
-
2008
- 2008-12-12 AU AU2008255266A patent/AU2008255266B2/en not_active Ceased
Patent Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6613509B1 (en) * | 1999-03-22 | 2003-09-02 | Regents Of The University Of California | Determination of base (nucleotide) composition in DNA oligomers by mass spectrometry |
Non-Patent Citations (3)
Title |
---|
"New England Biolabs Catalog", 1998, pages: 121, 284 * |
BUCK ET AL.: "Design strategies and performance of custom DNA sequencing primers", BIOTECHNIQUES, vol. 27, no. 3, September 1999 (1999-09-01), pages 528 - 536 * |
NUBEL ET AL.: "PCR primers to amplify 16S rRNA genes from Cyanobacteria", APPLIED AND ENVIRONMENTAL MICROBIOLOGY, vol. 63, no. 8, August 1997 (1997-08-01), pages 3327 - 3332 * |
Also Published As
Publication number | Publication date |
---|---|
AU2008255266A1 (en) | 2009-01-08 |
AU2005322640B2 (en) | 2008-09-18 |
JP2007525978A (en) | 2007-09-13 |
AU2005322640A1 (en) | 2006-07-06 |
EP1725686A2 (en) | 2006-11-29 |
WO2005098047A2 (en) | 2005-10-20 |
CA2560521C (en) | 2012-01-03 |
WO2006071241A2 (en) | 2006-07-06 |
CA2560521A1 (en) | 2006-07-06 |
EP1725686A4 (en) | 2008-12-10 |
AU2008255266B2 (en) | 2011-07-14 |
WO2006071241A3 (en) | 2007-09-13 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
WO2006071241A3 (en) | Compositions for use in identification of bacteria | |
WO2005091971A3 (en) | Compositions for use in identification of alphaviruses | |
WO2007100397A3 (en) | Compositions for use in identification of adventitious contaminant viruses | |
WO2005092059A3 (en) | Compositions for use in identification of viral hemorrhagic fever viruses | |
WO2006116127A3 (en) | Compositions for use in identification of bacteria | |
WO2008125365A8 (en) | Microbial population analysis | |
WO2007047778A3 (en) | Compositions for use in identification of influenza viruses | |
WO2008069906A3 (en) | Digital expression of gene analysis | |
WO2007039319A8 (en) | Dna microarray for rapid identification of candida albicans in blood cultures | |
WO2007023461A3 (en) | Method for detection of micro-organisms and antibiotic resistance markers and nucleic acid oligonucleotides therefor | |
WO2007011367A3 (en) | Sensitive detection of bacteria by improved nested polymerase chain reaction targeting the 16s ribosomal rna gene and identification of bacterial species by amplicon sequencing | |
WO2004068112A3 (en) | Hairpin primer amplification | |
WO2006001972A3 (en) | Compositions and methods for the diagnosis of group b streptococcus infection | |
WO2006130872A3 (en) | Peptide nucleic acid probes for analysis of microorganisms | |
WO2007076143A3 (en) | Species-specific primer sets and identification of species-specific dna sequences using genome fragment enrichment | |
HK1085159A1 (en) | Detection, identification and differentiation of eubacterial taxa using a hybridization assay | |
WO2006119419A3 (en) | Materials and kits for use in hot-start pcr, and methods of amplifying nucleic acids in a polymerase chain reaction | |
WO2008127839A3 (en) | Compositions for use in identification of bacteria | |
WO2005030131A3 (en) | Bis-quinazoline compounds for the treatment of bacterial infections | |
WO2005074522A3 (en) | Detection of ruminant dna via pcr | |
WO2005028680A3 (en) | Methods, compositions, and kits for the concentration and detection of microorganisms | |
WO2010039763A3 (en) | Compositions for use in identification of antibiotic-resistant bacteria | |
WO2006037102A3 (en) | Methods for identifying polymerase inhibitors | |
WO2004046375A3 (en) | Method for the detection of microorganisms in pharmaceutical products | |
WO2006137939A3 (en) | Compositions and methods for detecting group a streptococci |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
AK | Designated states |
Kind code of ref document: A2 Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BW BY BZ CA CH CN CO CR CU CZ DE DK DM DZ EC EE EG ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NA NI NO NZ OM PG PH PL PT RO RU SC SD SE SG SK SL SM SY TJ TM TN TR TT TZ UA UG US UZ VC VN YU ZA ZM ZW |
|
AL | Designated countries for regional patents |
Kind code of ref document: A2 Designated state(s): BW GH GM KE LS MW MZ NA SD SL SZ TZ UG ZM ZW AM AZ BY KG KZ MD RU TJ TM AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HU IE IS IT LT LU MC NL PL PT RO SE SI SK TR BF BJ CF CG CI CM GA GN GQ GW ML MR NE SN TD TG |
|
121 | Ep: the epo has been informed by wipo that ep was designated in this application | ||
NENP | Non-entry into the national phase |
Ref country code: DE |
|
WWW | Wipo information: withdrawn in national office |
Country of ref document: DE |
|
122 | Ep: pct application non-entry in european phase |