WO2001083693A2 - Compounds having affinity for the vascular endothelial growth factor receptor-2 (vegfr-2) and associated uses - Google Patents

Compounds having affinity for the vascular endothelial growth factor receptor-2 (vegfr-2) and associated uses Download PDF

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WO2001083693A2
WO2001083693A2 PCT/US2001/013598 US0113598W WO0183693A2 WO 2001083693 A2 WO2001083693 A2 WO 2001083693A2 US 0113598 W US0113598 W US 0113598W WO 0183693 A2 WO0183693 A2 WO 0183693A2
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seq
compound
peptide
amino acids
vegfr
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PCT/US2001/013598
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WO2001083693A3 (en
WO2001083693A8 (en
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Peter Joseph Schatz
Min-Jia Chen
Sunila Piplani
Cecilia A. Mozsgai
Palani Balu
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Glaxo Group Limited
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Publication of WO2001083693A8 publication Critical patent/WO2001083693A8/en
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K7/00Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
    • C07K7/04Linear peptides containing only normal peptide links
    • C07K7/06Linear peptides containing only normal peptide links having 5 to 11 amino acids
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K47/00Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
    • A61K47/50Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
    • A61K47/51Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
    • A61K47/56Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule
    • A61K47/59Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes
    • A61K47/60Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes the organic macromolecular compound being a polyoxyalkylene oligomer, polymer or dendrimer, e.g. PEG, PPG, PEO or polyglycerol
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K51/00Preparations containing radioactive substances for use in therapy or testing in vivo
    • A61K51/02Preparations containing radioactive substances for use in therapy or testing in vivo characterised by the carrier, i.e. characterised by the agent or material covalently linked or complexing the radioactive nucleus
    • A61K51/04Organic compounds
    • A61K51/08Peptides, e.g. proteins, carriers being peptides, polyamino acids, proteins
    • A61K51/088Peptides, e.g. proteins, carriers being peptides, polyamino acids, proteins conjugates with carriers being peptides, polyamino acids or proteins
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/52Cytokines; Lymphokines; Interferons
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K7/00Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
    • C07K7/04Linear peptides containing only normal peptide links
    • C07K7/08Linear peptides containing only normal peptide links having 12 to 20 amino acids
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Definitions

  • the present invention relates generally to novel compounds that have affinity for the vascular endothelial cell growth factor receptor-2 (VEGFR-2). More particularly, the invention relates to such compounds which act as modulators of vascular endothelial cell growth factor (VEGF) function.
  • the invention additionally relates to methods of using the novel compounds and pharmaceutical compositions containing a compound of the invention as the active agent.
  • the invention has application in the fields of biochemistry and medicinal chemistry and particularly provides inhibitors of VEGF function for use in the treatment of human disease.
  • Blood vessels serve an important role in the circulatory system of humans and many animals.
  • the internal surface of a blood vessel is comprised of endothelial cells. These cells are well-suited for imparting a smooth and "non-adhesive" or “non-tacky” quality to the internal surfaces of blood vessels.
  • This smooth and "non-adhesive" internal surface is critical for the free flow and transport of blood and related materials through the entire circulatory system. Without such a smooth internal surface, blood vessels would become obstructed as thrombi or other blockages form at "sticky" locations on the internal walls. Such obstructions can result in partial or even complete blockage of the blood flow necessary to maintain normal tissue and organ functioning.
  • endothelial cells serve not only an important structural component of blood vessels, but also provide blood vessels with a smooth and non-tacky internal surface. Blood vessel formation takes place in response to stimuli in the form of specialized growth factors. These growth factors induce mitosis in cells already present in blood vessels. The newly formed cells replace damaged cells or extend the length of the blood vessel. This process of growing blood vessels from preexisting endothelial cells is termed "angiogenesis.” As its name suggests, vascular endothelial cell growth factor (VEGF) is involved in endothelial cell proliferation.
  • VEGF vascular endothelial cell growth factor
  • VEGF is also referred to as "vascular permeability factor” or “vasculotropin.”
  • VEGF is a glycosylated dimer having an overall apparent molecular mass of about 46 kDa (the apparent molecular mass of each subunit is equal to 23 kDa). This important protein selectively induces mitosis of vascular endothelial cells resulting in endothelial cell proliferation and consequently, angiogenesis. Since blood vessels comprise, in part, endothelial cells, VEGF is required for the formation and maintenance of blood vessels.
  • VEGF acts on the extracellular portion of VEGFR-2 expressed on vascular endothelial cells. Thus, once VEGF binds to VEGFR-2, a signal is sent to the nucleus of the endothelial cell instructing it to divide.
  • angiogenesis is deleterious to an organism's overall health.
  • continuous angiogenesis can cause or exacerbate diseases such as psoriasis, rheumatoid arthritis and retinopathy.
  • angiogenesis makes possible continued tumor growth by vascularizing the tumor, thereby supplying the tumor, with blood and nutrients necessary to sustain the tumor's growth.
  • preventing or at least reducing angiogenesis is desirable.
  • One attempt at limiting angiogenesis is described in U.S. Patent No. 5,952,199.
  • the invention provides compounds comprising a peptide chain that binds to VEGFR-2.
  • the peptide chain is approximately 15 to 40 amino acids in length and contains a sequence of amino acids of formula (I) (I) X 1 CX 2 X 3 X 4 X 5 X 6 GX 7 X 8 X 9 CX 10 X 11 X 12 (SEQ ID NO: 1) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X, is S, T, Y, A, Q, V or E; X 2 is W, R, Y, G, Q or F; X 3 is P, L, T, S, A or E; X 4 is G, S, A or N; X 5 is E, D or A; X 6 is Y, F, N or A; X 7 is G or V; X 8 is V, E, F, L or M; X 9 is E, D or V; X 10 is W, Y or F; X
  • the peptide chain is approximately 8 to 40 amino acids in length and contains a sequence of amino acids of formula (II)
  • the peptide chain is approximately 8 to 40 amino acids in length and contains a sequence of amino acids of formula (III)
  • the compound comprises a single peptide chain. In other contexts, it is preferred that the compound is in the form of a dimer, i.e. a compound comprised of two peptide chains that may or may not be identical.
  • the compounds of the invention include a peptide having its N-terminus coupled to a polyethylene glycol molecule.
  • Peptides having an acetylated N-terminus and/or an amidated C-terminus are also preferred.
  • a pharmaceutical composition that comprises a therapeutically effective amount of a compound of the invention in combination with a pharmaceutically acceptable carrier.
  • a method is provided for treating a patient who would benefit from administration of a VEGFR-2 antagonist, the method comprising administering to the patient a therapeutically effective amount of an antagonist compound of the present invention.
  • a method for imaging and assessing neovascularization during angiogenesis comprising the steps of administering to a patient compound of the invention to a patient wherein the compound is coupled to a detectable label to form a labeled compound, allowing the labeled compound to bind to VEGFR-2, and detecting the detectable label.
  • Amino acid residues in peptides are abbreviated as follows: Phenylalanine is Phe or F; Leucine is Leu or L; Isoleucine is He or I; Methionine is Met or M; Valine is Val or V; Serine is Ser or S; Proline is Pro or P; Threonine is Thr or T; Alanine is Ala or A; Tyrosine is Tyr or Y; Histidine is His or H; Glutamine is Gin or Q; Asparagine is Asn or N; Lysine is Lys or K; Aspartic Acid is Asp or D; Glutamic Acid is Glu or E; Cysteine is Cys or C; Tryptophan is Trp or W; Arginine is Arg or R; and Glycine is Gly or G.
  • “1-Nal” is used to refer to 1-naphthylalanine
  • the "2-Nal” is used to refer to 2-naphthylalanine.
  • Stereoisomers e.g., D-amino acids of the twenty conventional amino acids, unnatural amino acids such as ⁇ , ⁇ -disubstituted amino acids, N-alkyl amino acids, lactic acid, and other unconventional amino acids may also be suitable components for compounds of the present invention.
  • unconventional amino acids include: ⁇ -alanine, 1-naphthylalanine, 2-naphthylalanine, 3-pyridylalanine, 4-hydroxyproline, O-phosphoserine, N-acetylserine, N-formylmethionine, 3-methylhistidine, 5-hydroxylysine, nor-leucine, and other similar amino acids and imino acids (e.g., 4-hydroxyproline) .
  • Peptide or “polypeptide” refers to a polymer in which the monomers are alpha amino acids joined together through amide bonds. Peptides are two or often more amino acid monomers long. One or more of the peptide chains disclosed herein may appear in the compounds of the present. It is also contemplated that the peptide chains disclosed herein represent only a portion of the overall peptide included in the compound.
  • dimer as in a peptide “dimer” refers to a compound in which two peptide chains are linked; generally, although not necessarily, the two peptide chains will be identical and are linked through a linking moiety covalently bound to the carboxyl terminus of each chain.
  • agonist is used herein to refer to a ligand that binds to a receptor and activates the receptor.
  • antagonist is used herein to refer to a ligand that binds to a receptor without activating the receptor. Antagonists are either competitive antagonists or noncompetitive antagonists. A “competitive antagonist” blocks the receptor site that is specific for the agonist. A “noncompetitive antagonist” inactivates the functioning of the receptor by interacting with a site other than the agonist binding site.
  • modulator refers to a compound that is either an agonist or an antagonist of VEGFR-2. "Pharmaceutically or therapeutically effective dose or amount” refers to a dose sufficient to induce a desired biological result.
  • the dose or amount is sufficient to inhibit or reduce the effects of VEGF and, thus, alleviate the symptoms associated with an undesired proliferation of endothelial cells in vivo.
  • treat as in “treat a disease” is intended to include any means of treating a disease in a mammal, including (1) preventing the disease, i.e., avoiding any clinical symptoms of the disease, (2) inhibiting the disease, that is, arresting the development or progression of clinical symptoms, and/or (3) relieving the disease, i.e., causing regression of clinical symptoms.
  • “Optional” or “optionally” means that the subsequently described circumstance may or may not occur, so that the description includes instances where the circumstance occurs and instances where it does not.
  • pharmaceutically acceptable carrier is meant a material which is not biologically or otherwise undesirable, i.e., the material may be administered to an individual along with the selected active agent without causing any undesirable biological effects or interacting in a deleterious manner with any of the other components of the pharmaceutical composition in which it is contained.
  • the invention provides compounds comprising a peptide chain that binds to VEGFR-2.
  • a compound comprising a peptide chain approximately 15 to 40 amino acids in length that binds to VEGFR-2 and contains a sequence of amino acids of formula (I)
  • X ! is S; X 2 is W; X 4 is G; X 5 is E; X 6 is Y; X 7 is G; X 8 is V; X 9 is E X ]0 is W; and X n is S.
  • Examples of particularly preferred sequences satisfying formula (I) include, but are not limited to, the following:
  • TCWSGEYGGVECWAR SEQ ID NO: 6
  • SCWPGDFGGVECWSL SEQ ID NO: 7
  • ACWTGEYGGEECWEL (SEQ ID NO: 10);
  • TCWPGEYGGVECWAV (SEQ ID NO: 11); TCWPGEYGGVECWGR (SEQ ID NO: 12);
  • TCWPGEYGGVECWSL (SEQ ID NO: 14);
  • ACWPSEYGGVECWSL (SEQ ID NO: 16); SCWPGEFGGVECWSV (SEQ ID NO: 17);
  • TCWPGEYGGEECWSL (SEQ ID NO: 19);
  • TCWPGEYGGVECYSV SEQ ID NO: 26
  • SCWPGEYGGEECWSL SEQ ID NO: 27
  • SC WPGEYGGVECYNV SEQ ID NO: 28
  • SCWPGEYGGVECWKL SEQ ID NO: 29
  • TCWPGEYGGEVCWAL (SEQ ID NO: 31);
  • SCWPGEYGGVDCWSV (SEQ ID NO: 32); SCWPGEYGGVECWTL (SEQ ID NO: 33);
  • SCWPGEYGGEVCWSL (SEQ ID NO: 37); VCWPGEYGGVECWNV (SEQ ID NO: 38);
  • VCWPGEYGGEDCWSL (SEQ ID NO: 40);
  • SCWEGEYGGVECWSI (SEQ ID NO: 42); TC(l-Nal)PGEYGGVECYSV (SEQ ID NO: 43);
  • ACWPGEYGGVECYSV (SEQ ID NO: 46);
  • TCAPGEYGGVECYSV SEQ ID NO: 47
  • TCWPGAYGGVECYSV SEQ ID NO: 48
  • TCWPGEAGGVECYSV (SEQ ID NO: 49);
  • TCWPGEYGGVACYSV (SEQ ID NO: 50);
  • TCWPGEYGGVECYAV (SEQ ID NO: 52).
  • ARVVSCWPGEYGGVECWSLNS (SEQ ID NO: 54);
  • PGVVSCWLGEYGGEECWSHNY (SEQ ID NO: 55); FPLVSCWPGEYGGVECWSLKT (SEQ ID NO: 56);
  • TGVVTCWSGEYGGVECWARNT SEQ ID NO: 57
  • HRVDSCWPGDFGGVECWSLSE SEQ ID NO: 58
  • VRVEYCWPGEYGGVDCWSPKP (SEQ ID NO: 59);
  • NRVEACWTGEYGGEECWELNL (SEQ ID NO: 61); AGQVTCWPGEYGGVECWAVKY (SEQ ID NO: 62);
  • VTCWPGEYGGVECWGRKG (SEQ ID NO: 63);
  • NRVESCWEGDNGGVECWWLKY (SEQ ID NO: 66); SGDVACWPSEYGGVECWSLHY (SEQ ID NO: 67);
  • HWEGSCWPGEFGGVECWSVNY (SEQ ID NO: 68);
  • LDVVSCWPGEFGGFDCWSMKY (SEQ ID NO: 71); NRVLVCRPGEYGGEECWSLDY (SEQ ID NO: 72);
  • GGVVSCWPAEYGGVECWSMDY (SEQ ID NO: 73);
  • PRVVTCWPGEYGGEECWSIKY (SEQ ID NO: 76); ERVTTCWPGEYGGVECYSVKY (SEQ ID NO: 77);
  • EWVVSCWPGEYGGEECWSLKY (SEQ ID NO: 78);
  • KRVVSCWPGEYGGVECYNVKY (SEQ ID NO: 79);
  • TQVESCWPGEYGGVECWKLRY (SEQ ID NO: 80);
  • DGVVSCWPSEYGGEDCFNLHY (SEQ ID NO: 81); RPSETCWPGEYGGEVCWALKY (SEQ ID NO: 82);
  • PRVVSCWPGEYGGVDCWSVKY SEQ ID NO: 84
  • MRVEYCWPAEYGGVECFSPRD (SEQ ID NO: 86); SRVLACGPGEYGGEECWFVQY (SEQ ID NO: 87);
  • ETVESCWTGEYGGVECWTLNY (SEQ ID NO: 88); VLEVSCWPGEYGGEVCWSLKM (SEQ ID NO: 89);
  • RVTTCWPGEYGGVECYSVKY (SEQ ID NO: 95);
  • VTTCWPGEYGGVECYSVKY (SEQ ID NO: 96);
  • TCWPGEYGGVECYSVKY (SEQ ID NO: 97); TCWPGEYGGVECYSVKY (SEQ ID NO: 98);
  • RVTTCWPGEYGGVECYSVK (SEQ ID NO: 99);
  • RVTTCWPGEYGGVECYSV (SEQ ID NO: 100);
  • RVTTCWPGEYGGVECYSVK(alloc)Y (SEQ ID NO: 102); ERVTTCWPGEYGGVEC YSVRY (SEQ ID NO: 103);
  • RVTTCWPGEYGGVECYSVRY (SEQ ID NO: 104);
  • RVTTCWPGEYGGVECYSVAY (SEQ ID NO: 106);
  • RVTTC(l-Nal)PGEYGGVECYSVKY (SEQ ID NO: 107); RVTTC(2-Nal)PGEYGGVECYSVKY (SEQ ID NO: 108);
  • RVTTCFPGEYGGVECYSVAY (SEQ ID NO: 109);
  • HVTTCWPGEYGGVECYSVRY (SEQ ID NO: 110);
  • ERVTTC(l-Nal)PGEYGGVECYSVAY SEQ ID NO: 114
  • RVATCWPGEYGGVECYSVAY (SEQ ID NO: 115);
  • RVTACWPGEYGGVECYSVAY (SEQ ID NO: 116);
  • RVTTCAPGEYGGVECYSVAY SEQ ID NO: 117
  • RVTTCWPGAYGGVECYSVAY SEQ ID NO: 118
  • RVTTCWPGEAGGVECYSVAY (SEQ ID NO: 119); RVTTCWPGEYGGVACYSVAY(SEQ IDNO: 120);
  • RVTTCWPGEYGGVECASVAY (SEQ IDNO: 121);
  • RVTTCWPGEYGGVECYAVAY (SEQ IDNO: 122).
  • RVTTCWPGEYGGVECYSVRA (SEQ IDNO: 123).
  • compounds comprising a peptide chain approximately 8 to 40 amino acids in length that binds to VEGFR-2 and contains a sequence of amino acids of formula (II) (II) CX , 1 GX , 2 X , 3 X , 4 CW (SEQ ID NO: 2) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X' j is W or G; X' 2 is P or A; X' 3 is E or D; X* 4 is G or R.
  • X' j is W; X 2 is P; X' 3 is E; and X' 4 is G.
  • Examples of particularly preferred sequences satisfying Formula (II) include, but are not limited to, the following:
  • CWGPDGCW (SEQ ID NO: 125);
  • YNTVENCWGPDGCWLD (SEQ ID NO: 129);
  • MSLVDKCWGPEGCWLE (SEQ ID NO: 130); TITVGSCWGPEGCWLDSRY (SEQ ID NO: 131);
  • IFLGENCWGPDGCWLE SEQ ID NO: 132
  • IREGDMCWGPEGCWVD (SEQ ID NO: 133);
  • LTLVDNCWGPDGCWLE (SEQ ID NO: 134);
  • ESRVDDCWGPDGCWLDPIT (SEQ ID NO: 135); VEYVANCGGAERCWLGTNM (SEQ ID NO: 136);
  • QDCWGPEGCWLQEQG (SEQ ID NO: 137); VLDADNCWGPEGCWLE (SEQ ID NO: 138); MSEVEDCWGPEGCWLE (SEQ ID NO: 139); NCWGPEGCWLE (SEQ ID NO: 140); SHRVDDCWGPDGCWLE (SEQ ID NO: 141); IIEVGNCWGPEGCWLE (SEQ ID NO: 142); and
  • VDNCWGPEGCWLE (SEQ ID NO: 143).
  • the invention provides compounds comprising a peptide chain approximately 8 to 40 amino acids in length that binds to VEGFR-2 and contains a sequence of amino acids of formula (III)
  • GWLGVGVH (SEQ ID NO: 144);
  • GWLGAGEHN (SEQ IDNO: 145); GWLGVGEH (SEQ IDNO: 146);
  • GWLGLGEH (SEQ IDNO: 147);
  • GWRGIGEH (SEQ ID NO: 149).
  • NASRISSGWLGVGVHNLSA (SEQ ID NO: 150);
  • VIGRTWSGWLGVGVHNLSN (SEQ ID NO: 152);
  • QCGRVSSGWLGVGVHNLPF (SEQ ID NO: 153); TNQRRSSGWLGVGVHTLSP (SEQ ID NO: 154);
  • GHKRASSGWLGVGVHKLSH (SEQ ID NO: 155); HRRRMSSGWLGVGEHKLP (SEQ ID NO: 156); SSGWLGVGVHYLSD (SEQ ID NO: 157); QRRRSSSGWLGLGEHRL (SEQ ID NO: 158); PQRRSSSGWIGLGVHDLFN (SEQ ID NO: 159); SSRRASSGWRGIGEHNLYN (SEQ ID NO: 160); and
  • RCSSGWLGVGVHNLS (SEQ ID NO: 161).
  • Standard solid phase peptide synthesis techniques are preferred for synthesis of the peptides of the present invention. Such techniques are described, for example, by Merrifield (1963) J Am. Chem. Soc. 85:2149. As is well known in the art, solid phase synthesis using the Merrifield method involves successive coupling of Ct-amino protected amino acids to a growing support-bound peptide chain. After the initial coupling of a protected amino acid to a resin support (e.g., a polystyrene resin, a chloromethylated resin, a hydroxymethyl resin, a benzhydrylamine resin, or the like, depending on the chemistry used), the ⁇ -amino protecting group is removed by a choice of reagents, depending on the specific protecting group.
  • a resin support e.g., a polystyrene resin, a chloromethylated resin, a hydroxymethyl resin, a benzhydrylamine resin, or the like, depending on the chemistry used
  • Suitable CC-amino protecting groups are those known to be useful in the art of stepwise synthesis of peptides. Included are acyl type protecting groups (e.g., formyl, trifluoroacetyl, acetyl), aromatic urethane type protecting groups (e.g., benzyloxycarbonyl (Cbz) and substituted Cbz), aliphatic urethane protecting groups (e.g., t-butyloxycarbonyl (Boc), isopropyloxycarbonyl, cyclohexyloxycarbonyl), alkyl type protecting groups (e.g., benzyl, triphenylmethyl), fluorenylmethyl oxycarbonyl (Fmoc), Alloc and Dde.
  • acyl type protecting groups e.g., formyl, trifluoroacetyl, acetyl
  • aromatic urethane type protecting groups e.g., benzyloxycarbonyl (
  • the side chain protecting groups (typically ethers, esters, trityl, and the like) remain intact during coupling; however, the side chain protecting group must be removable upon completion of the synthesis of the final peptide.
  • Preferred side chain protecting groups will depend on the particular amino acid that is being protected as well as the overall chemistry used. After removal of the (X-amino protecting group, the remaining protected amino acids are coupled stepwise in the desired order. Each protected amino acid is generally reacted in about a 3 -fold excess using an appropriate carboxyl group activator such as
  • HBTU 2-(lH-benzotriazol-l-yl)-l,l,3,3 tetramethyluronium hexafluorophosphate
  • DCC dicyclohexylcarbodiimide
  • the compound is cleaved from the solid support by treatment with a reagent such as trifluoroacetic acid, preferably in combination with a scavenger such as ethanedithiol, ⁇ -mercaptoethanol or thioanisole.
  • a reagent such as trifluoroacetic acid
  • a scavenger such as ethanedithiol, ⁇ -mercaptoethanol or thioanisole.
  • naphthylalanine can be substituted for tiyptophan, with 1 -naphthylalanine (1 -Nal) or 2-naphthylalanine (2-Nal).
  • Other synthetic amino acids that can be substituted into the peptides of the present invention include, but are not limited to, pyroglutamic acid (pyr), nor-leucine and 3-pyridylalanine.
  • the compounds of the present invention may possess agonist or antagonist activity.
  • the compounds exhibit antagonist activity toward VEGFR-2 when they are in the form of a single peptide chain.
  • the compounds of the invention exhibit agonist activity toward VEGFR-2 when they are in the form of a dimer, i.e., a compound comprised of two peptide chains that may or may not be identical.
  • the compounds ofthe present invention may be in the form of a dimer. As indicated above, the dimer forms ofthe present invention possess agonist activity toward VEGFR-2. Preferably, the dimer compounds ofthe invention have the structure of formula (IV)
  • R 1 , R 2 , nl, n2, n3, n4, x, y and L ⁇ are defined as follows.
  • R 1 is a peptide chain that binds to VEGFR-2 and contains a sequence of amino acids of formula (I), (II) or (III) as defined above.
  • R 2 is also a peptide chain that binds to VEGFR-2 and contains a sequence of amino acids of formula (I), (II), or (III).
  • R 1 and R 2 can be the same or different. It is preferred, however, that R 1 and R 2 are the same.
  • ⁇ A is a ⁇ -alanine residue and may or may not be present, meaning that nl, n2, n3 and n4 are independently zero or 1.
  • Lk is a terminal linking moiety.
  • Each dimer contains only one linking moiety, meaning that one of x and y is zero and the other is 1.
  • the terminal linking moiety Lk can be any moiety recognized by those skilled in the art as suitable for joining the peptides of R 1 and R 2 .
  • Lk is preferably although not necessarily selected from the group consisting of a disulfide bond, a carbonyl moiety and a C,_i 2 linking moiety optionally terminated with one or two -NH- linkages and optionally substituted at one or more available carbon atoms with a lower alkyl substituent.
  • the linking moiety comprises -NH-R 3 -NH- wherein R 3 is lower (C,_ 6 ) alkylene substituted with a functional group such as a carboxyl group or an amino group that enables binding to another molecular moiety (e.g., as may be present on the surface of a solid support), and is optionally substituted with a lower alkyl group.
  • R 3 is lower (C,_ 6 ) alkylene substituted with a functional group such as a carboxyl group or an amino group that enables binding to another molecular moiety (e.g., as may be present on the surface of a solid support), and is optionally substituted with a lower alkyl group.
  • the linking moiety is a lysine residue or lysine amide, i.e., a lysine residue wherein the carboxyl group has been converted to an amide moiety -CONH 2 .
  • the pair form a disulfide bond linking these residues.
  • the disulfide bond may be present within a single peptide chain forming an intramolecular disulfide bond.
  • the disulfide bond may connect the two chains.
  • more than one disulfide bond may be present.
  • Amino terminal modifications include methylation (i.e., conversion of a free amino group to an -NHCH 3 or -N(CH 3 ) 2 moiety), acetylation (with either acetic acid per se, or with a halogenated derivative thereof such as ⁇ -chloroacetic acid, cc-bromoacetic acid, or cc-iodoacetic acid), addition of a benzyloxycarbonyl group, or blocking with a blocking group containing a carboxylate functionality RCOO- or a sulfonyl functionality R-SO 2 -, where R is selected from the group consisting of alkyl, aryl, heteroaryl, alkyl aryl, and the like, and similar groups.
  • amino terminal modifications herein include conjugation to a polyethylene glycol molecule ("PEGylation") and acetylation.
  • PEGylation polyethylene glycol molecule
  • acetylation it is also preferred that the peptide chains contain no amino groups other than at the N-terminus (and thus no lysine residues), so that N-terminal-specific modification may be carried out.
  • the peptides and compounds ofthe invention can advantageously be modified with or covalently coupled to one or more of a variety of hydrophilic polymers. It has been found that when the peptide compounds are derivatized with a hydrophilic polymer, their solubility and circulation half-lives are increased and their immunogenicity is masked. Quite surprisingly, the foregoing can be accomplished with little, if any, di inishment in binding activity.
  • Nonproteinaceous polymers suitable for use in accordance with the present invention include, but are not limited to, polyalkylethers as exemplified by polyethylene glycol and polypropylene glycol, polylactic acid, polyglycolic acid, polyoxyalkenes, polyvinylalcohol, polyvinylpyrrolidone, cellulose and cellulose derivatives, dextran and dextran derivatives, etc.
  • hydrophilic polymers have an average molecular weight ranging from about 500 to about 100,000 daltons, more preferably from about 2,000 to about 60,000 daltons and, even more preferably, from about 5,000 to about 50,000 daltons. In preferred embodiments, such hydrophilic polymers have average molecular weights of about 5,000 daltons, 10,000 daltons 20,000 daltons and 40,000 daltons.
  • the peptide compounds ofthe invention can be derivatized with or coupled to such polymers using any ofthe methods set forth in Zallipsky (1995) Bioconjugate Chem. 6:150-165; Monfardini et al. (1995) Bioconjugate Chem. 6:62-69; U.S. Patent No. 4,640,835; U.S. Patent No. 4,496,689; U.S. Patent No. 4,301,144; U.S. Patent No. 4,670,417; U.S. Patent No. 4,791,192; U.S. Patent No. 4,179,337 or WO 95/34326.
  • the N-terminus of a peptide ofthe invention is coupled to a polyethylene glycol molecule.
  • the polymer is selected from the group consisting of polyethylene glycol, polypropylene glycol, polylactic acid, polyglycolic acid and derivatives thereof.
  • the polymer is polyethylene glycol (PEG), in which case the peptide is referred to as "PEGylated.”
  • PEG is a linear, water-soluble polymer of ethylene oxide repeating units with two terminal hydroxyl groups. PEGs are classified by their molecular weights which typically range from about 500 daltons to about 40,000 daltons.
  • the PEGs employed have an average molecular weight of from about 500 to about 80,000 daltons. It is particularly preferred that the polymer has an average molecular weight of between about 5,000 to 40,000 daltons.
  • Preferred PEGylated compounds include, by way of example, the following:
  • the PEG coupled to the peptide compounds ofthe invention can be either branched or unbranched.
  • PEG is commercially available from Shearwater Polymers, Inc. (Huntsville, Alabama), Sigma Chemical Co. and other companies.
  • Suitable PEGs include, but are not limited to, monomethoxypolyethylene glycol (MePEG-OH), monomethoxypolyethylene glycol- succinate (MePEG-S), monomethoxypolyethylene glycol-succinimidyl succinate (MePEG- S-NHS), monomethoxypolyethylene glycol-amine (MePEG-NH 2 ), monomethoxypolyethylene glycol-tresylate (MePEG-TRES) and monomethoxypolyethylene glycol-imidazolyl-carbonyl (MePEG-IM).
  • MePEG-OH monomethoxypolyethylene glycol
  • MePEG-S monomethoxypolyethylene glycol- succinate
  • MePEG- S-NHS monomethoxypolyethylene glycol-succinimidyl succinate
  • MePEG-NH 2 monomethoxypolyethylene glycol-amine
  • MePEG-TRES monomethoxypolyethylene glycol-
  • the hydrophilic polymer that is employed e.g., PEG
  • an unreactive group such as a methoxy or ethoxy group.
  • the polymer is activated at the other terminus by reaction with a suitable activating agent, such as a cyanuric halide (e.g., cyanuric chloride, bromide or fluoride), diimidazole, an anhydride reagent (e.g., a dihalosuccinic anhydride, such as dibromosuccinic anhydride), acyl azide, />-diazoniumbenzyl ether, 3-(p-diazoniumphenoxy)-2-hydroxypropylether, or the like.
  • a suitable activating agent such as a cyanuric halide (e.g., cyanuric chloride, bromide or fluoride), diimidazole, an anhydride reagent (e.g., a dihalosuccinic anhydride, such as
  • the activated polymer is then reacted with a peptide compound of the invention to produce a polymer-derivatized peptide compound.
  • a functional group in the peptide compounds ofthe invention can be activated for reaction with the polymer, or two groups can be joined in a concerted coupling reaction using known coupling methods. It will be readily appreciated that the peptide compounds ofthe invention can be derivatized with PEG using a myriad of other reaction schemes known to those of skill in the art.
  • the N-terminus ofthe peptide is acetylated.
  • a preferred acetylated peptide is as follows:
  • the peptides and compounds ofthe invention can be modified with an acetyl moiety (Ac) using standard techniques known to those skilled in the art. On such technique includes combining the peptide with an acetylating reagent (e.g., acetyl chloride, acetic anhydride) in a suitable solvent to form the acetylated product. To the extent that other acetylated products are formed during the reaction, the N-terminus derivative can be isolated using conventional separation techniques.
  • an acetylating reagent e.g., acetyl chloride, acetic anhydride
  • the peptides and compounds ofthe invention can advantageously be modified to include an amide functionality at the carboxyl terminus ofthe peptide.
  • Preferred amidated peptides include:
  • RVTTCWPGEYGGVECYSVKY(NH 2 ) (SEQ ID NO: 95); and ERVTTCWPGEYGGVECYSVAY(NH 2 ) (SEQ ID NO: 105).
  • a benzhydrylamine resin is preferably used as the solid support for peptide synthesis.
  • a hydrogen fluoride treatment is employed to release the peptide from the support, directly resulting in the free peptide amide (i.e., the C-terminus is -C(O)NH 2 ).
  • proline analogues in which the ring size ofthe proline residue is changed from 5 members to 4, 6, or 7 members can be employed.
  • the peptides of the invention also serve as structural models for non-peptidic compounds with similar biological activity.
  • the peptide backbones may be replaced with a backbone composed of phosphonates, amidates, carbamates, sulfonamides, secondary amines, and N-methylamino acids.
  • the compounds ofthe invention are useful in vitro as unique tools for understanding the biological role of vascular endothelial cell growth factor, including the evaluation ofthe many factors thought to influence, and be influenced by, the production of vascular endothelial cell growth factor and the binding of vascular endothelial cell growth factor to the VEGFR-2 (e.g., the mechanism of endothelial cell growth factor signal transduction/receptor activation).
  • the present compounds are also useful in the development of other compounds that bind to VEGFR-2, because the compounds provide important structure-activity relationship (SAR) information that facilitates that development.
  • SAR structure-activity relationship
  • a compound ofthe invention can be used as a reagent for detecting a VEGFR-2 receptor or related receptor on living cells, fixed cells, in biological fluids, in tissue homogenates, in purified, natural biological materials, etc. For example, by labeling a compound ofthe invention, one can identify a cell expressing VEGFR-2 on its surface.
  • a compound ofthe invention can be used in in situ staining, FACS (fluorescence-activated cell sorting), Western blotting, ELISA (enzyme-linked immunoadsorptive assay), etc. or in receptor purification or in purifying cells expressing VEGFR-2 on the cell surface (or inside permeabilized cells).
  • a compound ofthe invention can also be utilized as a commercial research reagent for various medical research and diagnostic uses. Such uses include but are not limited to: (1) use as a calibration standard for quantitating the activities of candidate VEGFR-2 antagonists in a variety of functional assays; (2) use as a blocking reagent in random peptide screening, i.e., in searching for new families of VEGFR-2 peptide ligands; (3) use in the co-crystallization with VEGFR-2, i.e., a compound ofthe invention will allow formation of crystals bound to VEGFR-2, enabling the determination of receptor/peptide structure x-ray crystallography; (4) use in inhibiting or decreasing the proliferation and growth of vascular endothelial cell growth factor-dependent cell lines, such as human umbilical vein endothelial cells (HUVEC); and (5) other research and diagnostic applications wherein the VEGFR-2 is antagonized and such antagonization is conveniently calibrated against a known quantity of a vascular endotheli
  • a particularly preferred application for the compounds ofthe present invention is in imaging and assessing neovascularization during angiogenesis.
  • the expression ofthe VEGFR-2 in endothelial tissue and its reported concentration increase during angiogenesis may allow the compounds ofthe invention to be useful in imaging, and thereby assessing, neovascularization associated with several disorders including cancer.
  • the compounds ofthe invention may serve as sensitive and specific imaging agents for angiogenesis.
  • a compound ofthe invention can be labeled with a radionuclide such as 99m Tc, In or 123 I and injected intravenously into the patient.
  • Either 3-D single photon emission computed tomography (SPECT) imaging or 2-D planar gamma scintigraphy can be applied to localize tracer concentration that positively correlates with neovascularization.
  • SPECT computed tomography
  • There are numerous labeling mechanisms for the metals which would generally include either the use of bifunctional chelators or amino acid derived chelators.
  • labels such as 123 I can be attached via a covalent bond to the compound.
  • a compound ofthe invention can be labeled with a positron-emitting isotope such as ⁇ C, 18 F, 68 Ga, 76 Br, 61 Cu, or 64 Cu, injected into the patient and imaged using positron-emitting tomography (PET).
  • PET positron-emitting tomography
  • PET provides improved sensitivity and resolution compared with SPECT, although the availability of PET isotopes is lower as compared to the radionuclides used for SPECT.
  • a compound ofthe invention can be PEGylated and labeled with one ofthe above positron-emitting nuclei or gamma-emitting radionuclides to extend blood half life and reduce extravasation.
  • a compound ofthe invention can be attached to a liposome or amorphous polymer to reduce extravasation. The carrier (i.e. liposome or polymer) is then labeled with one or more ofthe above positron-emitting atoms or gamma-emitting radionuclides for detection with PET or SPECT.
  • the longer-lived nuclei such as ⁇ In or 76 Br are most appropriate as there could be significant delay between tracer administration and imaging while waiting for the unbound compound to be eliminated from the bloodstream.
  • the carrier can also be labeled with multiple copies of paramagnetic nuclei such as Gd, Fe or Mn for detection with magnetic resonance imaging (MRI). Although MRI sensitivity of tracer detection is relatively low (particularly when compared to SPECT or PET), spatial resolution is improved. In addition, MRI techniques have the added benefit of avoiding the use of ionizing radiation.
  • a compound ofthe invention can be attached to a monocrystalline iron oxide (MION) particle and used for detection via MRI.
  • a compound ofthe can be labeled with a fluorophore that preferentially emits in the near infrared region (700-1 OOOnm) and used for the detection of angiogenesis in tissue relatively close to the surface ofthe skin.
  • the invention provides a method for imaging and assessing neovascularization during angiogenesis comprising the steps of administering a compound ofthe present invention to a patient wherein the compound is coupled to a detectable label to form a labeled compound, allowing the labeled compound to bind to VEGFR-2, and detecting the detectable label.
  • the detectable label is selected from the group consisting of 99m Tc, m In, 123 I, ⁇ C, 18 F, 68 Ga, 76 Br, 61 Cu, 64 Cu, Gd, Fe, Mn and a fluorophore.
  • the detecting step is performed using SPECT, 2-D planar gamma scintigraphy, PET, MRI, infrared detection, or a combination thereof.
  • An antagonist compound ofthe invention can also be administered to a warm blooded animal, including a human, to treat a disease, condition or disorder that is responsive to a compound that antagonizes the effects of vascular endothelial cell growth factor in vivo.
  • the present invention encompasses methods for treating a patient who would benefit from administration of a VEGFR-2 antagonist, comprising administering to the patient a therapeutically effective amount of a VEGFR-2 antagonist and thus alleviate the symptoms associated with angiogenesis in vivo.
  • an antagonist compound of this invention will find use in the treatment of diseases such as psoriasis, rheumatoid arthritis, retinopathy and cancer.
  • an agonist compound ofthe invention can be administered to a warm blooded animal, including a human, to treat a disease, condition or disorder that is responsive to a compound that agonizes the effects of vascular endothelial cell growth factor in vivo.
  • the present invention encompasses methods for treating a patient who would benefit from administration of a VEGFR-2 agonist and thus alleviate the symptoms associated with decreased angiogenesis in vivo.
  • an agonist compound of this invention will find use in the treatment of diseases such as coronary artery disease wherein the formation of new blood vessels serving cardiac tissue at least partially remedies the decrease in blood flow from coronary vessels that are obstructed.
  • the invention includes pharmaceutical compositions comprising, as an active ingredient, at least one ofthe compounds ofthe invention in association with a pharmaceutical carrier or diluent.
  • the composition can be administered by oral, parenteral (intramuscular, intraperitoneal, intravenous (IV) or subcutaneous) injection, transdermal (either passively or using iontophoresis or electroporation), or transmucosal (nasal, vaginal, rectal, or sublingual) routes of administration, or using bioerodible inserts, and can be formulated in dosage forms appropriate for each route of administration.
  • Solid dosage forms for oral administration include capsules, tablets, pills, powders, and granules.
  • the active compound is admixed with at least one inert pharmaceutically acceptable carrier such as sucrose, lactose, or starch.
  • Such dosage forms can also comprise, as is normal practice, an additional substance other than an inert diluent, e.g., a lubricating agent such as magnesium stearate.
  • the dosage forms may also comprise a buffering agent. Tablets and pills can additionally be prepared with enteric coatings.
  • Liquid dosage forms for oral administration include pharmaceutically acceptable emulsions, solutions, suspensions and syrups, with the elixirs containing an inert diluent commonly used in the art, such as water. These compositions can also include one or more adjuvants, such as a wetting agent, an emulsifying agent, a suspending agent, a sweetening agent, a flavoring agent or a perfuming agent. Preparations for parenteral administration include sterile aqueous or non-aqueous solutions, suspensions, and emulsions.
  • non-aqueous solvents or vehicles examples include propylene glycol, polyethylene glycol, vegetable oils, such as olive oil and corn oil, gelatin, and injectable organic esters such as ethyl oleate.
  • Such dosage forms may also contain one or more adjuvants such as a preserving agent, a wetting agent, an emulsifying agent and a dispersing agent.
  • the dosage forms may be sterilized by, for example, filtration through a bacteria-retaining filter, by incorporating sterilizing agents into the compositions, by irradiating the compositions, or by heating the compositions. They can also be manufactured using sterile water, or some other sterile injectable medium, prior to use.
  • compositions for rectal or vaginal administration are preferably suppositories which may contain, in addition to the active substance, an excipient such as cocoa butter or a suppository wax.
  • Compositions for nasal or sublingual administration are also prepared with one or more standard excipients well known in the art.
  • the dosage of active ingredient in the compositions of this invention may be varied; however, it is necessary that the amount ofthe active ingredient is such that a suitable dosage form is obtained.
  • the selected dosage depends upon the desired therapeutic effect, the route of administration, the duration ofthe treatment desired, and other factors well known to those skilled in the art. Generally, dosage levels of between 0.001 to 10 mg/kg of body weight daily are administered to mammals.
  • the peptides of Table 1 were synthesized chemically using standard solid phase techniques as described above. To evaluate binding affinity, the synthesized peptides were tested against labeled VEGF by competing for binding to VEGFR-2 in a standard scintillation proximity assay (STND SPA). Briefly stated, the binding portion of human VEGFR-2 is replicated and thereafter attached to a suitable substrate using conventional techniques. A known amount of peptide is introduced together with a standard amount of 12 T labeled VEGF ( I25 I-VEGF-165 available from Amersham Pharmacia Biotech, Piscataway, New Jersey). After a sufficient period of time to allow for binding, the substrate is washed and a scintillation detector is used to detect I25 I labeled VEGF.
  • STND SPA scintillation proximity assay
  • the quantity of peptide used is not sufficient to displace the 125 I labeled VEGF. Alternatively, if no scintillation is detected, the quantity of peptide used is sufficient to remove the I25 I labeled VEGF.
  • the procedure is then repeated for a different peptide. In this way, it is possible to determine the relative binding affinities for each peptide.
  • Some peptides were also tested in a mouse VEGFR-2 based SPA (Mouse SPA). The testing procedure is substantially the same as that described immediately above with the exception that mouse-derived VEGFR- 2 is substituted for human VEGFR-2.
  • VEGF human umbilical vein endothelial cells
  • human umbilical vein endothelial cells By way of general procedure, human umbilical vein endothelial cells are placed on a suitable culture medium. A standard amount of VEGF along with a known amount of peptide is added to the cells. After a sufficient period of time, the cultures are inspected for detection of cell proliferation. If cell proliferation is detected, the quantity of peptide used is not sufficient to displace VEGF and consequently inhibit cell growth. Alternatively if no proliferation is detected, the quantity of peptide used is sufficient to inhibit VEGF-induced proliferation of cells.
  • the peptides, along with their corresponding IC 50 values (in nM) for standard SPA (STND SPA), HUVEC and Mouse SPA, are shown in Table 1.
  • the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
  • each peptide is the result of effectively deleting the amino acid located on the N-terminus ofthe peptide in a sequential fashion.
  • the peptides were tested as described above for Examples 1-8.
  • the peptides along with their corresponding IC 50 values (in nM) for standard SPA (STND SPA) and HUVEC are shown in Table 2.
  • the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
  • RVTTCWPGEYGGVECYSVKY (SEQ ID NO: 95), were synthesized chemically using standard solid phase techniques as described previously. As seen in Table 3, each peptide is the result of effectively deleting the amino acid located on the C-terminus ofthe peptide in a sequential fashion. The peptides were tested as described above for Examples 1-8. The peptides along with their corresponding IC 50 values (in nM) for standard SPA (STND SPA) are shown below. Again, the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
  • the peptides of Table 4 were synthesized chemically using standard solid phase techniques as described previously. The amino acid lysine, however, was substituted for other amino acids.
  • the peptides were tested as described above for Examples 1-8.
  • the peptides along with their corresponding IC 50 values (in nM) for standard SPA (STND SPA), HUVEC and Mouse SPA are shown below. Again, the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
  • the peptides of Table 5 based were synthesized chemically using standard solid phase techniques as described previously.
  • the C-terminus of each peptide was amidated using techniques well known to those skilled in the art.
  • the peptides were tested as described above for Examples 1-8.
  • the peptides along with their corresponding IC 50 values (in nM) for standard SPA (STND SPA) and HUVEC are shown below. As before, the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
  • the following peptide was synthesized chemically using standard solid phase techniques as described previously.
  • the N-terminus ofthe peptide was acetylated using techniques well known to those skilled in the art.
  • the peptide was tested as described above for Examples 1-8.
  • the peptide along with its corresponding IC 50 value (in nM) for standard SPA (STND SPA) is shown below.
  • the results ofthe assay reveals important information about the structure-activity relationship for VEGF to its receptor.
  • the peptides of Table 7 were synthesized chemically using standard solid phase techniques as described previously. The amino acid tryptophan, however, was substituted for other amino acids.
  • the peptides were tested as described above for Examples 1-8.
  • the peptides along with their corresponding IC 50 values (in nM) for standard SPA (STND SPA), HUVEC and Mouse SPA are shown in Table 7. Again, the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
  • the peptides of Table 8 were synthesized chemically using standard solid phase techniques as described previously. The amino acid arginine, however, was substituted for other amino acids.
  • the peptides were tested as described above for Examples 1-8.
  • the peptides along with their corresponding IC 50 values (in nM) for standard SPA (STND SPA) and HUVEC are shown below.
  • the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
  • the peptides were tested as described above for Examples 1-8.
  • the peptides along with their corresponding IC 50 values (in nM) for standard SPA (STND SPA) and HUVEC are shown below.
  • the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
  • the peptides were tested as described above for Examples 1-8.
  • the peptides along with their corresponding IC 50 values (in nM) for standard SPA (STND SPA) are shown below.
  • the results of these assays reveal important information about the structure- activity relationship for VEGF to its receptor.
  • These PEGylated compounds are also expected to exhibit improved pharmacokinetic values e.g., serum half-life, bioavailablity, etc.
  • the compounds ofthe invention are thus ligands for VEGFR-2.
  • the compounds ofthe invention demonstrate effective antagonism for the VEGFR-2.
  • 123 I is covalently attached to a compound ofthe invention using a conventional technique.
  • the labeled compound is administered intravenously to a cancer patient in an amount sufficient to detect neovascularization in the patient's tumor.
  • the tumor-affected area is imaged using three-dimensional single photon emission computed tomography.
  • a concentrated area of labeled-compound is detected indicating the presence of new blood vessels in the patient's tumor.
  • the patient's chemotherapy regimen is adjusted accordingly.

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Abstract

Novel compounds are provided that bind to VEGFR-2. The novel compounds have a peptide chain approximately 8 to 40 amino acids in length that binds to VEGFR-2, or are dimers of such peptide chains. The compounds are useful as probes for affinity screening and as angiogenesis imaging agents. In addition, those compounds that are antagonists of VEGFR-2 are useful in the treatment of diseases including cancer, retinopathy, rheumatoid arthritis and others. Pharmaceutical compositions and methods of use are provided as well.

Description

COMPOUNDS HAVING AFFINITY FOR THE VASCULAR ENDQTHELIAL GROWTH FACTOR RECEPTOR-2 (VEGFR-2 I AND ASSOCIATED USES
TECHNICAL FIELD The present invention relates generally to novel compounds that have affinity for the vascular endothelial cell growth factor receptor-2 (VEGFR-2). More particularly, the invention relates to such compounds which act as modulators of vascular endothelial cell growth factor (VEGF) function. The invention additionally relates to methods of using the novel compounds and pharmaceutical compositions containing a compound of the invention as the active agent. The invention has application in the fields of biochemistry and medicinal chemistry and particularly provides inhibitors of VEGF function for use in the treatment of human disease.
BACKGROUND ART Blood vessels serve an important role in the circulatory system of humans and many animals. In mammals, the internal surface of a blood vessel is comprised of endothelial cells. These cells are well-suited for imparting a smooth and "non-adhesive" or "non-tacky" quality to the internal surfaces of blood vessels. This smooth and "non-adhesive" internal surface is critical for the free flow and transport of blood and related materials through the entire circulatory system. Without such a smooth internal surface, blood vessels would become obstructed as thrombi or other blockages form at "sticky" locations on the internal walls. Such obstructions can result in partial or even complete blockage of the blood flow necessary to maintain normal tissue and organ functioning. Thus, endothelial cells serve not only an important structural component of blood vessels, but also provide blood vessels with a smooth and non-tacky internal surface. Blood vessel formation takes place in response to stimuli in the form of specialized growth factors. These growth factors induce mitosis in cells already present in blood vessels. The newly formed cells replace damaged cells or extend the length of the blood vessel. This process of growing blood vessels from preexisting endothelial cells is termed "angiogenesis." As its name suggests, vascular endothelial cell growth factor (VEGF) is involved in endothelial cell proliferation. VEGF is also referred to as "vascular permeability factor" or "vasculotropin." VEGF is a glycosylated dimer having an overall apparent molecular mass of about 46 kDa (the apparent molecular mass of each subunit is equal to 23 kDa). This important protein selectively induces mitosis of vascular endothelial cells resulting in endothelial cell proliferation and consequently, angiogenesis. Since blood vessels comprise, in part, endothelial cells, VEGF is required for the formation and maintenance of blood vessels.
VEGF acts on the extracellular portion of VEGFR-2 expressed on vascular endothelial cells. Thus, once VEGF binds to VEGFR-2, a signal is sent to the nucleus of the endothelial cell instructing it to divide.
As indicated above, vascular endothelial cell proliferation is desirable and necessary in a number of contexts. In other situations, however, angiogenesis is deleterious to an organism's overall health. For example, continuous angiogenesis can cause or exacerbate diseases such as psoriasis, rheumatoid arthritis and retinopathy. In addition, angiogenesis makes possible continued tumor growth by vascularizing the tumor, thereby supplying the tumor, with blood and nutrients necessary to sustain the tumor's growth. Clearly then, for these and many other disorders, preventing or at least reducing angiogenesis is desirable. One attempt at limiting angiogenesis is described in U.S. Patent No. 5,952,199.
This reference describes antagonizing the action of VEGF by administering VEGF-binding receptors, thereby decreasing the amount of unbound VEGF available to bind to the naturally occurring receptors expressed on endothelial cells. U.S. Patent No. 6,011,003 describes a similar process but employs only a fragment of a VEGF-binding receptor that retains the ability to bind VEGF .
There remains a need, however, for highly active compounds that bind very specifically to VEGFR-2, both for studies of the important biological activities mediated by the receptor and for treatment of diseases, disorders and conditions that would benefit from antagonizing the VEGFR-2. The present invention provides such compounds, and also provides pharmaceutical compositions and methods for using the compounds as therapeutic agents. DISCLOSURE OF THE INVENTION
In one embodiment, the invention provides compounds comprising a peptide chain that binds to VEGFR-2. In one aspect, the peptide chain is approximately 15 to 40 amino acids in length and contains a sequence of amino acids of formula (I) (I) X1CX2X3X4X5X6GX7X8X9CX10X11X12 (SEQ ID NO: 1) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X, is S, T, Y, A, Q, V or E; X2 is W, R, Y, G, Q or F; X3 is P, L, T, S, A or E; X4 is G, S, A or N; X5 is E, D or A; X6 is Y, F, N or A; X7 is G or V; X8 is V, E, F, L or M; X9 is E, D or V; X10 is W, Y or F; X„ is S, A, E, G, T, W, V, N, K or F; and X]2 is L, H, R, P, Q, V, M, S or I.
In another aspect, the peptide chain is approximately 8 to 40 amino acids in length and contains a sequence of amino acids of formula (II)
(II) CX^GX'^XVCW (SEQ ID NO: 2) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X is W or G; X'2 is P or A; X3 is E or D; and X'4 is G or R.
In a third aspect, the peptide chain is approximately 8 to 40 amino acids in length and contains a sequence of amino acids of formula (III)
(III) GWX",GX"2GX"3H (SEQ ID NO: 3) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X", is L, I or R; X"2 is V, L or I; and X"3 is E or V.
In some contexts, it is preferred that the compound comprises a single peptide chain. In other contexts, it is preferred that the compound is in the form of a dimer, i.e. a compound comprised of two peptide chains that may or may not be identical.
It is preferred that the compounds of the invention include a peptide having its N-terminus coupled to a polyethylene glycol molecule. Peptides having an acetylated N-terminus and/or an amidated C-terminus are also preferred.
In a further embodiment of the invention, a pharmaceutical composition is provided that comprises a therapeutically effective amount of a compound of the invention in combination with a pharmaceutically acceptable carrier. In an additional embodiment, a method is provided for treating a patient who would benefit from administration of a VEGFR-2 antagonist, the method comprising administering to the patient a therapeutically effective amount of an antagonist compound of the present invention.
In another embodiment, a method is provided for imaging and assessing neovascularization during angiogenesis comprising the steps of administering to a patient compound of the invention to a patient wherein the compound is coupled to a detectable label to form a labeled compound, allowing the labeled compound to bind to VEGFR-2, and detecting the detectable label.
BRIEF DESCRIPTION OF THE DRAWINGS Figures 1-1, 1-2, 1-3 and 1-4 provide the sequences of representative peptide chains contained within the compounds of the invention.
MODES FOR CARRYING OUT THE INVENTION I. DEFINITIONS
It is to be understood that unless otherwise indicated, this invention is not limited to specific peptide sequences, molecular structures, pharmaceutical compositions, or the like, as such may vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments only and is not intended to be limiting.
It must be noted that, as used in the specification and the appended claims, the singular forms "a," "an" and "the" include plural referents unless the context clearly dictates otherwise. Thus, for example, reference to "a novel compound" in a pharmaceutical composition means that more than one of the novel compounds can be present in the composition, reference to "a pharmaceutically acceptable carrier" includes combinations of such carriers, and the like.
In this specification and in the claims that follow, reference will be made to a number of terms which shall be defined to have the following meanings:
Amino acid residues in peptides are abbreviated as follows: Phenylalanine is Phe or F; Leucine is Leu or L; Isoleucine is He or I; Methionine is Met or M; Valine is Val or V; Serine is Ser or S; Proline is Pro or P; Threonine is Thr or T; Alanine is Ala or A; Tyrosine is Tyr or Y; Histidine is His or H; Glutamine is Gin or Q; Asparagine is Asn or N; Lysine is Lys or K; Aspartic Acid is Asp or D; Glutamic Acid is Glu or E; Cysteine is Cys or C; Tryptophan is Trp or W; Arginine is Arg or R; and Glycine is Gly or G. In addition, "1-Nal" is used to refer to 1-naphthylalanine, the "2-Nal" is used to refer to 2-naphthylalanine.
Stereoisomers (e.g., D-amino acids) of the twenty conventional amino acids, unnatural amino acids such as α,α-disubstituted amino acids, N-alkyl amino acids, lactic acid, and other unconventional amino acids may also be suitable components for compounds of the present invention. Examples of unconventional amino acids include: β-alanine, 1-naphthylalanine, 2-naphthylalanine, 3-pyridylalanine, 4-hydroxyproline, O-phosphoserine, N-acetylserine, N-formylmethionine, 3-methylhistidine, 5-hydroxylysine, nor-leucine, and other similar amino acids and imino acids (e.g., 4-hydroxyproline) .
"Peptide" or "polypeptide" refers to a polymer in which the monomers are alpha amino acids joined together through amide bonds. Peptides are two or often more amino acid monomers long. One or more of the peptide chains disclosed herein may appear in the compounds of the present. It is also contemplated that the peptide chains disclosed herein represent only a portion of the overall peptide included in the compound.
The term "dimer" as in a peptide "dimer" refers to a compound in which two peptide chains are linked; generally, although not necessarily, the two peptide chains will be identical and are linked through a linking moiety covalently bound to the carboxyl terminus of each chain.
The term "agonist" is used herein to refer to a ligand that binds to a receptor and activates the receptor. The term "antagonist" is used herein to refer to a ligand that binds to a receptor without activating the receptor. Antagonists are either competitive antagonists or noncompetitive antagonists. A "competitive antagonist" blocks the receptor site that is specific for the agonist. A "noncompetitive antagonist" inactivates the functioning of the receptor by interacting with a site other than the agonist binding site. The term "modulator" refers to a compound that is either an agonist or an antagonist of VEGFR-2. "Pharmaceutically or therapeutically effective dose or amount" refers to a dose sufficient to induce a desired biological result. That result can be alleviation of the signs, symptoms, or causes of a disease, or any other desired alteration of a biological system. Preferably, the dose or amount is sufficient to inhibit or reduce the effects of VEGF and, thus, alleviate the symptoms associated with an undesired proliferation of endothelial cells in vivo.
The term "treat" as in "treat a disease" is intended to include any means of treating a disease in a mammal, including (1) preventing the disease, i.e., avoiding any clinical symptoms of the disease, (2) inhibiting the disease, that is, arresting the development or progression of clinical symptoms, and/or (3) relieving the disease, i.e., causing regression of clinical symptoms.
"Optional" or "optionally" means that the subsequently described circumstance may or may not occur, so that the description includes instances where the circumstance occurs and instances where it does not. By "pharmaceutically acceptable carrier" is meant a material which is not biologically or otherwise undesirable, i.e., the material may be administered to an individual along with the selected active agent without causing any undesirable biological effects or interacting in a deleterious manner with any of the other components of the pharmaceutical composition in which it is contained.
II. THE VEGF MODULATORS
A. COMPOUNDS OF FORMULA (I):
In a first embodiment, the invention provides compounds comprising a peptide chain that binds to VEGFR-2. In one aspect, a compound is provided comprising a peptide chain approximately 15 to 40 amino acids in length that binds to VEGFR-2 and contains a sequence of amino acids of formula (I)
(I) X1CX2X3X4X5X6GX7X8X9CX10XπX12 (SEQ ID NO: 1) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X] is S, T, Y, A, Q, V or E; X2 is W, R, Y, G, Q, F or A; X3 is P, L, T, S, A or E; X4 is G, S, A or N; X5 is E, D or A; X6 is Y, F, N or A; X7 is G or V; X8 is V, E, F, L or M; X9 is E, D, V or A; X10 is W, Y, F or A; X„ is S, A, E, G, T, W, V, N, K or F; and X12 is L, H, R, P, Q, V, M, S or l.
Preferably, X! is S; X2 is W; X4 is G; X5 is E; X6 is Y; X7 is G; X8 is V; X9 is E X]0 is W; and Xn is S. Examples of particularly preferred sequences satisfying formula (I) include, but are not limited to, the following:
SCWPGEYGGVECWSL (SEQ ID NO: 4);
SCWLGEYGGEECWSH (SEQ ID NO: 5);
TCWSGEYGGVECWAR (SEQ ID NO: 6); SCWPGDFGGVECWSL (SEQ ID NO: 7);
YCWPGEYGGVDCWSP (SEQ ID NO: 8);
SCWAGEYGGVECWSQ (SEQ ID NO: 9);
ACWTGEYGGEECWEL (SEQ ID NO: 10);
TCWPGEYGGVECWAV (SEQ ID NO: 11); TCWPGEYGGVECWGR (SEQ ID NO: 12);
SCWPGEYGGVECWTV (SEQ ID NO: 13);
TCWPGEYGGVECWSL (SEQ ID NO: 14);
SCWEGDNGGVECWWL (SEQ ID NO: 15);
ACWPSEYGGVECWSL (SEQ ID NO: 16); SCWPGEFGGVECWSV (SEQ ID NO: 17);
QCWPGDYGGVDCWSV (SEQ ID NO: 18);
TCWPGEYGGEECWSL (SEQ ID NO: 19);
SCWPGEFGGFDCWSM (SEQ ID NO: 20);
VCRPGEYGGEECWSL (SEQ ID NO: 21); SCWPAEYGGVECWSM (SEQ ID NO: 22);
SCWPGEYGGEECYWL (SEQ ID NO: 23);
ECYTNAAGVLECWVS (SEQ ID NO: 24);
TCWPGEYGGEECWSI (SEQ ID NO: 25);
TCWPGEYGGVECYSV (SEQ ID NO: 26); SCWPGEYGGEECWSL (SEQ ID NO: 27);
SC WPGEYGGVECYNV (SEQ ID NO: 28); SCWPGEYGGVECWKL (SEQ ID NO: 29);
SCWPSEYGGEDCFNL (SEQ ID NO: 30);
TCWPGEYGGEVCWAL (SEQ ID NO: 31);
SCWPGEYGGVDCWSV (SEQ ID NO: 32); SCWPGEYGGVECWTL (SEQ ID NO: 33);
YCWPAEYGGVECFSP (SEQ ID NO: 34);
ACGPGEYGGEECWFV (SEQ ID NO: 35);
SCWTGEYGGVECWTL (SEQ ID NO: 36);
SCWPGEYGGEVCWSL (SEQ ID NO: 37); VCWPGEYGGVECWNV (SEQ ID NO: 38);
SCQPGEYGGMVCWSL (SEQ ID NO: 39);
VCWPGEYGGEDCWSL (SEQ ID NO: 40);
SCFPSEYGGEDCWSL (SEQ ID NO: 41);
SCWEGEYGGVECWSI (SEQ ID NO: 42); TC(l-Nal)PGEYGGVECYSV (SEQ ID NO: 43);
TC(2-Nal)PGEYGGVECYSV (SEQ ID NO: 44);
TCFPGEYGGVECYSV (SEQ ID NO: 45);
ACWPGEYGGVECYSV (SEQ ID NO: 46);
TCAPGEYGGVECYSV (SEQ ID NO: 47); TCWPGAYGGVECYSV (SEQ ID NO: 48);
TCWPGEAGGVECYSV (SEQ ID NO: 49);
TCWPGEYGGVACYSV (SEQ ID NO: 50);
TCWPGEYGGVECASV (SEQ ID NO: 51); and
TCWPGEYGGVECYAV (SEQ ID NO: 52).
Other preferred Formula (I) sequences include, but are not limited to, the following:
SREVSCWPGEYGGVECWSLKE (SEQ ID NO: 53);
ARVVSCWPGEYGGVECWSLNS (SEQ ID NO: 54);
PGVVSCWLGEYGGEECWSHNY (SEQ ID NO: 55); FPLVSCWPGEYGGVECWSLKT (SEQ ID NO: 56);
TGVVTCWSGEYGGVECWARNT (SEQ ID NO: 57); HRVDSCWPGDFGGVECWSLSE (SEQ ID NO: 58);
VRVEYCWPGEYGGVDCWSPKP (SEQ ID NO: 59);
HQVVSCWAGEYGGVECWSQNA (SEQ ID NO: 60);
NRVEACWTGEYGGEECWELNL (SEQ ID NO: 61); AGQVTCWPGEYGGVECWAVKY (SEQ ID NO: 62);
VTCWPGEYGGVECWGRKG (SEQ ID NO: 63);
ERVISC WPGEYGGVECWTVNL (SEQ ID NO: 64);
SRVVTCWPGEYGGVECWSLEL (SEQ ID NO: 65);
NRVESCWEGDNGGVECWWLKY (SEQ ID NO: 66); SGDVACWPSEYGGVECWSLHY (SEQ ID NO: 67);
HWEGSCWPGEFGGVECWSVNY (SEQ ID NO: 68);
DRMQQCWPGDYGGVDCWSVDL (SEQ ID NO: 69);
HRVVTCWPGEYGGEECWSLGE (SEQ ID NO: 70);
LDVVSCWPGEFGGFDCWSMKY (SEQ ID NO: 71); NRVLVCRPGEYGGEECWSLDY (SEQ ID NO: 72);
GGVVSCWPAEYGGVECWSMDY (SEQ ID NO: 73);
GRVESCWPGEYGGEECYWLDS (SEQ ID NO: 74);
REECYTNAAGVLECWVS (SEQ ID NO: 75);
PRVVTCWPGEYGGEECWSIKY (SEQ ID NO: 76); ERVTTCWPGEYGGVECYSVKY (SEQ ID NO: 77);
EWVVSCWPGEYGGEECWSLKY (SEQ ID NO: 78);
KRVVSCWPGEYGGVECYNVKY (SEQ ID NO: 79);
TQVESCWPGEYGGVECWKLRY (SEQ ID NO: 80);
DGVVSCWPSEYGGEDCFNLHY (SEQ ID NO: 81); RPSETCWPGEYGGEVCWALKY (SEQ ID NO: 82);
SYVESCWPGEYGGVDCWSVKY (SEQ ID NO: 83);
PRVVSCWPGEYGGVDCWSVKY (SEQ ID NO: 84);
KRAVSCWPGEYGGVECWTLEY (SEQ ID NO: 85);
MRVEYCWPAEYGGVECFSPRD (SEQ ID NO: 86); SRVLACGPGEYGGEECWFVQY (SEQ ID NO: 87);
ETVESCWTGEYGGVECWTLNY (SEQ ID NO: 88); VLEVSCWPGEYGGEVCWSLKM (SEQ ID NO: 89);
SRVEVCWPGEYGGVECWNVES (SEQ ID NO: 90);
GPVVSCQPGEYGGMVCWSLNY (SEQ ID NO: 91);
ESDVVCWPGEYGGEDCWSLNY (SEQ ID NO: 92); GRVVSCFPSEYGGEDCWSLNY (SEQ ID NO: 93);
YQVESCWEGEYGGVECWSIKL (SEQ ID NO: 94);
RVTTCWPGEYGGVECYSVKY (SEQ ID NO: 95);
VTTCWPGEYGGVECYSVKY (SEQ ID NO: 96);
TTCWPGEYGGVECYSVKY (SEQ ID NO: 97); TCWPGEYGGVECYSVKY (SEQ ID NO: 98);
RVTTCWPGEYGGVECYSVK (SEQ ID NO: 99);
RVTTCWPGEYGGVECYSV (SEQ ID NO: 100);
ERVTTCWPGEYGGVECYSVK(alloc)Y (SEQ ID NO: 101);
RVTTCWPGEYGGVECYSVK(alloc)Y (SEQ ID NO: 102); ERVTTCWPGEYGGVEC YSVRY (SEQ ID NO: 103);
RVTTCWPGEYGGVECYSVRY (SEQ ID NO: 104);
ERVTTCWPGEYGGVECYSVAY (SEQ ID NO: 105);
RVTTCWPGEYGGVECYSVAY (SEQ ID NO: 106);
RVTTC(l-Nal)PGEYGGVECYSVKY (SEQ ID NO: 107); RVTTC(2-Nal)PGEYGGVECYSVKY (SEQ ID NO: 108);
RVTTCFPGEYGGVECYSVAY (SEQ ID NO: 109);
HVTTCWPGEYGGVECYSVRY (SEQ ID NO: 110);
GVTTCWPGEYGGVECYSVRY (SEQ ID NO: 111);
(Pyr)VTTCWPGEYGGVEC YSVRY (SEQ ID NO: 112); RVTTC(1 -Nal)PGEYGGVECYSVAY (SEQ ID NO: 113);
ERVTTC(l-Nal)PGEYGGVECYSVAY (SEQ ID NO: 114);
RVATCWPGEYGGVECYSVAY (SEQ ID NO: 115);
RVTACWPGEYGGVECYSVAY (SEQ ID NO: 116);
RVTTCAPGEYGGVECYSVAY (SEQ ID NO: 117); RVTTCWPGAYGGVECYSVAY (SEQ ID NO: 118);
RVTTCWPGEAGGVECYSVAY (SEQ ID NO: 119); RVTTCWPGEYGGVACYSVAY(SEQ IDNO: 120);
RVTTCWPGEYGGVECASVAY (SEQ IDNO: 121);
RVTTCWPGEYGGVECYAVAY (SEQ IDNO: 122); and
RVTTCWPGEYGGVECYSVRA (SEQ IDNO: 123).
B. COMPOUNDS OFFORMULA(II):
In another aspect of the invention there are provided compounds comprising a peptide chain approximately 8 to 40 amino acids in length that binds to VEGFR-2 and contains a sequence of amino acids of formula (II) (II) CX, 1GX, 2X, 3X, 4CW (SEQ ID NO: 2) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X'j is W or G; X'2 is P or A; X'3 is E or D; X*4 is G or R.
Preferably X'j is W; X2 is P; X'3 is E; and X'4 is G.
Examples of particularly preferred sequences satisfying Formula (II) include, but are not limited to, the following:
CWGPEGCW (SEQ ID NO: 124);
CWGPDGCW (SEQ ID NO: 125);
CGGPEGCW (SEQ ID NO: 126); and
CGGAERCW (SEQ ID NO: 127).
Other preferred Formula (II) sequences include, but are not limited to, the following:
SDSVDECWGPEGCWLE (SEQ ID NO: 128);
YNTVENCWGPDGCWLD (SEQ ID NO: 129);
MSLVDKCWGPEGCWLE (SEQ ID NO: 130); TITVGSCWGPEGCWLDSRY (SEQ ID NO: 131);
IFLGENCWGPDGCWLE (SEQ ID NO: 132);
IREGDMCWGPEGCWVD (SEQ ID NO: 133);
LTLVDNCWGPDGCWLE (SEQ ID NO: 134);
ESRVDDCWGPDGCWLDPIT (SEQ ID NO: 135); VEYVANCGGAERCWLGTNM (SEQ ID NO: 136);
QDCWGPEGCWLQEQG (SEQ ID NO: 137); VLDADNCWGPEGCWLE (SEQ ID NO: 138); MSEVEDCWGPEGCWLE (SEQ ID NO: 139); NCWGPEGCWLE (SEQ ID NO: 140); SHRVDDCWGPDGCWLE (SEQ ID NO: 141); IIEVGNCWGPEGCWLE (SEQ ID NO: 142); and
VDNCWGPEGCWLE (SEQ ID NO: 143).
C. COMPOUNDS OF FORMULA (III):
In a third aspect, the invention provides compounds comprising a peptide chain approximately 8 to 40 amino acids in length that binds to VEGFR-2 and contains a sequence of amino acids of formula (III)
(III) GWX"jGX"2GX"3H (SEQ ID NO: 3) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X"j is L, I or R; X"2 is V, L or I; and X"3 is E or V. Preferably X' is L; X"2 is V; and X"3 is V.
Examples of particularly preferred sequences satisfying Formula (III) include, but are not limited to, the following:
GWLGVGVH (SEQ ID NO: 144);
GWLGAGEHN (SEQ IDNO: 145); GWLGVGEH (SEQ IDNO: 146);
GWLGLGEH (SEQ IDNO: 147);
GWIGLGVH (SEQ ID NO: 148); and
GWRGIGEH (SEQ ID NO: 149).
Other preferred Formula (III) sequences include, but are not limited to, the following:
NASRISSGWLGVGVHNLSA (SEQ ID NO: 150);
SRRRHSTGWLGAGEHNLYS (SEQ ID NO: 151);
VIGRTWSGWLGVGVHNLSN (SEQ ID NO: 152);
QCGRVSSGWLGVGVHNLPF (SEQ ID NO: 153); TNQRRSSGWLGVGVHTLSP (SEQ ID NO: 154);
GHKRASSGWLGVGVHKLSH (SEQ ID NO: 155); HRRRMSSGWLGVGEHKLP (SEQ ID NO: 156); SSGWLGVGVHYLSD (SEQ ID NO: 157); QRRRSSSGWLGLGEHRL (SEQ ID NO: 158); PQRRSSSGWIGLGVHDLFN (SEQ ID NO: 159); SSRRASSGWRGIGEHNLYN (SEQ ID NO: 160); and
RCSSGWLGVGVHNLS (SEQ ID NO: 161).
D. SYNTHESIS OF THE PEPTIDES:
Standard solid phase peptide synthesis techniques are preferred for synthesis of the peptides of the present invention. Such techniques are described, for example, by Merrifield (1963) J Am. Chem. Soc. 85:2149. As is well known in the art, solid phase synthesis using the Merrifield method involves successive coupling of Ct-amino protected amino acids to a growing support-bound peptide chain. After the initial coupling of a protected amino acid to a resin support (e.g., a polystyrene resin, a chloromethylated resin, a hydroxymethyl resin, a benzhydrylamine resin, or the like, depending on the chemistry used), the α-amino protecting group is removed by a choice of reagents, depending on the specific protecting group. Suitable CC-amino protecting groups are those known to be useful in the art of stepwise synthesis of peptides. Included are acyl type protecting groups (e.g., formyl, trifluoroacetyl, acetyl), aromatic urethane type protecting groups (e.g., benzyloxycarbonyl (Cbz) and substituted Cbz), aliphatic urethane protecting groups (e.g., t-butyloxycarbonyl (Boc), isopropyloxycarbonyl, cyclohexyloxycarbonyl), alkyl type protecting groups (e.g., benzyl, triphenylmethyl), fluorenylmethyl oxycarbonyl (Fmoc), Alloc and Dde. The side chain protecting groups (typically ethers, esters, trityl, and the like) remain intact during coupling; however, the side chain protecting group must be removable upon completion of the synthesis of the final peptide. Preferred side chain protecting groups, as will appreciated by those skilled in the art, will depend on the particular amino acid that is being protected as well as the overall chemistry used. After removal of the (X-amino protecting group, the remaining protected amino acids are coupled stepwise in the desired order. Each protected amino acid is generally reacted in about a 3 -fold excess using an appropriate carboxyl group activator such as
2-(lH-benzotriazol-l-yl)-l,l,3,3 tetramethyluronium hexafluorophosphate (HBTU) or dicyclohexylcarbodiimide (DCC) in solution, for example, in methylene chloride (CH2C12), N-methyl pyrrolidone, dimethyl formamide (DMF), or mixtures thereof.
Once the synthesis is complete, the compound is cleaved from the solid support by treatment with a reagent such as trifluoroacetic acid, preferably in combination with a scavenger such as ethanedithiol, β-mercaptoethanol or thioanisole. The cleavage reagent not only cleaves the peptide from the resin, but also cleaves all remaining side chain protecting groups.
These procedures can also be used to synthesize peptides containing amino acids other than the 20 naturally occurring, genetically encoded amino acids. For instance, naphthylalanine can be substituted for tiyptophan, with 1 -naphthylalanine (1 -Nal) or 2-naphthylalanine (2-Nal). Other synthetic amino acids that can be substituted into the peptides of the present invention include, but are not limited to, pyroglutamic acid (pyr), nor-leucine and 3-pyridylalanine.
III. VARIATIONS AND MODIFICATIONS OF THE VEGF MODULATORS
A. AGONIST OR ANTAGONIST ACTIVITY:
Depending on their form, the compounds of the present invention may possess agonist or antagonist activity. The compounds exhibit antagonist activity toward VEGFR-2 when they are in the form of a single peptide chain. Alternatively, the compounds of the invention exhibit agonist activity toward VEGFR-2 when they are in the form of a dimer, i.e., a compound comprised of two peptide chains that may or may not be identical.
B. DIMER FORMS: The compounds ofthe present invention may be in the form of a dimer. As indicated above, the dimer forms ofthe present invention possess agonist activity toward VEGFR-2. Preferably, the dimer compounds ofthe invention have the structure of formula (IV)
Figure imgf000015_0001
wherein R1, R2, nl, n2, n3, n4, x, y and Lκ are defined as follows.
R1 is a peptide chain that binds to VEGFR-2 and contains a sequence of amino acids of formula (I), (II) or (III) as defined above. R2 is also a peptide chain that binds to VEGFR-2 and contains a sequence of amino acids of formula (I), (II), or (III). As previously indicated, R1 and R2 can be the same or different. It is preferred, however, that R1 and R2 are the same. βA is a β-alanine residue and may or may not be present, meaning that nl, n2, n3 and n4 are independently zero or 1.
Lk is a terminal linking moiety. Each dimer contains only one linking moiety, meaning that one of x and y is zero and the other is 1.
The terminal linking moiety Lk can be any moiety recognized by those skilled in the art as suitable for joining the peptides of R1 and R2. Lk is preferably although not necessarily selected from the group consisting of a disulfide bond, a carbonyl moiety and a C,_i2 linking moiety optionally terminated with one or two -NH- linkages and optionally substituted at one or more available carbon atoms with a lower alkyl substituent.
Preferably, the linking moiety comprises -NH-R3-NH- wherein R3 is lower (C,_6) alkylene substituted with a functional group such as a carboxyl group or an amino group that enables binding to another molecular moiety (e.g., as may be present on the surface of a solid support), and is optionally substituted with a lower alkyl group. Optimally, the linking moiety is a lysine residue or lysine amide, i.e., a lysine residue wherein the carboxyl group has been converted to an amide moiety -CONH2.
C. DISULFIDE BONDS:
When a pair of cysteine residues is present within a peptide ofthe invention, it is preferred that the pair form a disulfide bond linking these residues. The disulfide bond may be present within a single peptide chain forming an intramolecular disulfide bond. Alternatively, if the compound includes an additional cysteine-containing peptide chain, the disulfide bond may connect the two chains. In addition, where an additional pair of cysteine residues exists in the compound, more than one disulfide bond may be present. D. N-TERMINAL MODIFICATIONS:
One can also modify the amino terminus ofthe peptide to produce other compounds ofthe invention. Amino terminal modifications include methylation (i.e., conversion of a free amino group to an -NHCH3 or -N(CH3)2 moiety), acetylation (with either acetic acid per se, or with a halogenated derivative thereof such as α-chloroacetic acid, cc-bromoacetic acid, or cc-iodoacetic acid), addition of a benzyloxycarbonyl group, or blocking with a blocking group containing a carboxylate functionality RCOO- or a sulfonyl functionality R-SO2-, where R is selected from the group consisting of alkyl, aryl, heteroaryl, alkyl aryl, and the like, and similar groups. One can also incorporate a desamino residue at the N-terminus, so that there is no terminal amino group, to decrease susceptibility to proteases or to restrict the conformation ofthe peptide chain.
Particularly preferred amino terminal modifications herein include conjugation to a polyethylene glycol molecule ("PEGylation") and acetylation. When N-terminal modification is desired, it is also preferred that the peptide chains contain no amino groups other than at the N-terminus (and thus no lysine residues), so that N-terminal-specific modification may be carried out.
(i) PEGYLATED COMPOUNDS
The peptides and compounds ofthe invention can advantageously be modified with or covalently coupled to one or more of a variety of hydrophilic polymers. It has been found that when the peptide compounds are derivatized with a hydrophilic polymer, their solubility and circulation half-lives are increased and their immunogenicity is masked. Quite surprisingly, the foregoing can be accomplished with little, if any, di inishment in binding activity. Nonproteinaceous polymers suitable for use in accordance with the present invention include, but are not limited to, polyalkylethers as exemplified by polyethylene glycol and polypropylene glycol, polylactic acid, polyglycolic acid, polyoxyalkenes, polyvinylalcohol, polyvinylpyrrolidone, cellulose and cellulose derivatives, dextran and dextran derivatives, etc. Generally, such hydrophilic polymers have an average molecular weight ranging from about 500 to about 100,000 daltons, more preferably from about 2,000 to about 60,000 daltons and, even more preferably, from about 5,000 to about 50,000 daltons. In preferred embodiments, such hydrophilic polymers have average molecular weights of about 5,000 daltons, 10,000 daltons 20,000 daltons and 40,000 daltons.
The peptide compounds ofthe invention can be derivatized with or coupled to such polymers using any ofthe methods set forth in Zallipsky (1995) Bioconjugate Chem. 6:150-165; Monfardini et al. (1995) Bioconjugate Chem. 6:62-69; U.S. Patent No. 4,640,835; U.S. Patent No. 4,496,689; U.S. Patent No. 4,301,144; U.S. Patent No. 4,670,417; U.S. Patent No. 4,791,192; U.S. Patent No. 4,179,337 or WO 95/34326.
In a preferred embodiment, the N-terminus of a peptide ofthe invention is coupled to a polyethylene glycol molecule. It is particularly preferred that the polymer is selected from the group consisting of polyethylene glycol, polypropylene glycol, polylactic acid, polyglycolic acid and derivatives thereof. Most preferably the polymer is polyethylene glycol (PEG), in which case the peptide is referred to as "PEGylated." PEG is a linear, water-soluble polymer of ethylene oxide repeating units with two terminal hydroxyl groups. PEGs are classified by their molecular weights which typically range from about 500 daltons to about 40,000 daltons. In a presently preferred embodiment, the PEGs employed have an average molecular weight of from about 500 to about 80,000 daltons. It is particularly preferred that the polymer has an average molecular weight of between about 5,000 to 40,000 daltons. Preferred PEGylated compounds include, by way of example, the following:
(PEG10K)-ERVTTC(l-Nal)PGEYGGVECYSVAY (SEQ ID NO: 114);
(PEG,0K)-RVTTC(l-Nal)PGEYGGVECYSVAY (SEQ ID NO: 113); and
(PEG5K)-ERVTTC(l-Nal)PGEYGGVECYSVAY (SEQ ID NO: 114).
The PEG coupled to the peptide compounds ofthe invention can be either branched or unbranched. (See, e.g. Monfardini et al. (1995) Bioconjugate Chem. 6:62-69.) PEG is commercially available from Shearwater Polymers, Inc. (Huntsville, Alabama), Sigma Chemical Co. and other companies. Suitable PEGs include, but are not limited to, monomethoxypolyethylene glycol (MePEG-OH), monomethoxypolyethylene glycol- succinate (MePEG-S), monomethoxypolyethylene glycol-succinimidyl succinate (MePEG- S-NHS), monomethoxypolyethylene glycol-amine (MePEG-NH2), monomethoxypolyethylene glycol-tresylate (MePEG-TRES) and monomethoxypolyethylene glycol-imidazolyl-carbonyl (MePEG-IM).
Briefly, in one exemplary embodiment, the hydrophilic polymer that is employed, e.g., PEG, is capped at one terminus by an unreactive group such as a methoxy or ethoxy group. Thereafter, the polymer is activated at the other terminus by reaction with a suitable activating agent, such as a cyanuric halide (e.g., cyanuric chloride, bromide or fluoride), diimidazole, an anhydride reagent (e.g., a dihalosuccinic anhydride, such as dibromosuccinic anhydride), acyl azide, />-diazoniumbenzyl ether, 3-(p-diazoniumphenoxy)-2-hydroxypropylether, or the like. The activated polymer is then reacted with a peptide compound of the invention to produce a polymer-derivatized peptide compound. Alternatively, a functional group in the peptide compounds ofthe invention can be activated for reaction with the polymer, or two groups can be joined in a concerted coupling reaction using known coupling methods. It will be readily appreciated that the peptide compounds ofthe invention can be derivatized with PEG using a myriad of other reaction schemes known to those of skill in the art.
(ii) ACETYLATED COMPOUNDS
In some instances, the N-terminus ofthe peptide is acetylated. A preferred acetylated peptide is as follows:
Ac-ERVTTCWPGEYGGVECYSVAY (SEQ ID NO: 105).
The peptides and compounds ofthe invention can be modified with an acetyl moiety (Ac) using standard techniques known to those skilled in the art. On such technique includes combining the peptide with an acetylating reagent (e.g., acetyl chloride, acetic anhydride) in a suitable solvent to form the acetylated product. To the extent that other acetylated products are formed during the reaction, the N-terminus derivative can be isolated using conventional separation techniques. E. C-TERMINAL MODIFICATIONS:
The peptides and compounds ofthe invention can advantageously be modified to include an amide functionality at the carboxyl terminus ofthe peptide. Preferred amidated peptides include:
RVTTCWPGEYGGVECYSVKY(NH2) (SEQ ID NO: 95); and ERVTTCWPGEYGGVECYSVAY(NH2) (SEQ ID NO: 105).
In preparing peptides wherein the C-terminus carboxyl group is replaced by the amide -C(O)NR3R4 where R3 and R4 are independently H or lower (C,_6) alkyl, a benzhydrylamine resin is preferably used as the solid support for peptide synthesis. Upon completion ofthe synthesis, a hydrogen fluoride treatment is employed to release the peptide from the support, directly resulting in the free peptide amide (i.e., the C-terminus is -C(O)NH2). Alternatively, use of a chloromethylated resin during peptide synthesis coupled with reaction with ammonia (to cleave the side chain protected peptide from the support) yields the free peptide amide and reaction with an alkylamine or a dialkylamine yields a side chain protected alkylamide or dialkylamide (i.e., the C-terminus is -C(O)NR3R4 where R3 and R4 are as defined above). Side chain protecting groups are then removed in the usual fashion by treatment with hydrogen fluoride to give the free amides, alkylamides, or dialkylamides.
F. OTHER MODIFICATIONS:
One can also replace the naturally occurring side chains ofthe 20 genetically encoded amino acids (or the stereoisomeric D amino acids) with other side chains, for instance with groups such as alkyl, lower alkyl, cyclic 4-, 5-, 6- or 7-membered alkyl, amide, amide lower alkyl, amide di(lower alkyl), lower alkoxy, hydroxy, carboxy and the lower ester derivatives thereof, and 4-, 5-, 6- or 7-membered heterocyclic. In particular, proline analogues in which the ring size ofthe proline residue is changed from 5 members to 4, 6, or 7 members can be employed. One can also readily modify the peptides herein by phosphorylation or other methods as described in Hruby et al. (1990) Biochem J. 268:249-262. Thus, the peptides of the invention also serve as structural models for non-peptidic compounds with similar biological activity. For example, the peptide backbones may be replaced with a backbone composed of phosphonates, amidates, carbamates, sulfonamides, secondary amines, and N-methylamino acids.
IV. UTILITY
The compounds ofthe invention are useful in vitro as unique tools for understanding the biological role of vascular endothelial cell growth factor, including the evaluation ofthe many factors thought to influence, and be influenced by, the production of vascular endothelial cell growth factor and the binding of vascular endothelial cell growth factor to the VEGFR-2 (e.g., the mechanism of endothelial cell growth factor signal transduction/receptor activation). The present compounds are also useful in the development of other compounds that bind to VEGFR-2, because the compounds provide important structure-activity relationship (SAR) information that facilitates that development. Moreover, based on the ability to bind to VEGFR-2 and related receptors, a compound ofthe invention can be used as a reagent for detecting a VEGFR-2 receptor or related receptor on living cells, fixed cells, in biological fluids, in tissue homogenates, in purified, natural biological materials, etc. For example, by labeling a compound ofthe invention, one can identify a cell expressing VEGFR-2 on its surface. In addition, based on its ability to bind to VEGFR-2, a compound ofthe invention can be used in in situ staining, FACS (fluorescence-activated cell sorting), Western blotting, ELISA (enzyme-linked immunoadsorptive assay), etc. or in receptor purification or in purifying cells expressing VEGFR-2 on the cell surface (or inside permeabilized cells).
A compound ofthe invention can also be utilized as a commercial research reagent for various medical research and diagnostic uses. Such uses include but are not limited to: (1) use as a calibration standard for quantitating the activities of candidate VEGFR-2 antagonists in a variety of functional assays; (2) use as a blocking reagent in random peptide screening, i.e., in searching for new families of VEGFR-2 peptide ligands; (3) use in the co-crystallization with VEGFR-2, i.e., a compound ofthe invention will allow formation of crystals bound to VEGFR-2, enabling the determination of receptor/peptide structure x-ray crystallography; (4) use in inhibiting or decreasing the proliferation and growth of vascular endothelial cell growth factor-dependent cell lines, such as human umbilical vein endothelial cells (HUVEC); and (5) other research and diagnostic applications wherein the VEGFR-2 is antagonized and such antagonization is conveniently calibrated against a known quantity of a vascular endothelial cell growth factor antagonist, and the like. A particularly preferred application for the compounds ofthe present invention is in imaging and assessing neovascularization during angiogenesis. Although not wishing to be bound by theory, the expression ofthe VEGFR-2 in endothelial tissue and its reported concentration increase during angiogenesis may allow the compounds ofthe invention to be useful in imaging, and thereby assessing, neovascularization associated with several disorders including cancer. There are numerous means by which the compounds ofthe invention may serve as sensitive and specific imaging agents for angiogenesis. For example: a) A compound ofthe invention can be labeled with a radionuclide such as 99mTc, In or 123I and injected intravenously into the patient. Either 3-D single photon emission computed tomography (SPECT) imaging or 2-D planar gamma scintigraphy can be applied to localize tracer concentration that positively correlates with neovascularization. There are numerous labeling mechanisms for the metals which would generally include either the use of bifunctional chelators or amino acid derived chelators. In addition, labels such as 123I can be attached via a covalent bond to the compound. b) A compound ofthe invention can be labeled with a positron-emitting isotope such as πC, 18F, 68Ga, 76Br, 61Cu, or 64Cu, injected into the patient and imaged using positron-emitting tomography (PET). PET provides improved sensitivity and resolution compared with SPECT, although the availability of PET isotopes is lower as compared to the radionuclides used for SPECT. c) A compound ofthe invention can be PEGylated and labeled with one ofthe above positron-emitting nuclei or gamma-emitting radionuclides to extend blood half life and reduce extravasation. d) A compound ofthe invention can be attached to a liposome or amorphous polymer to reduce extravasation. The carrier (i.e. liposome or polymer) is then labeled with one or more ofthe above positron-emitting atoms or gamma-emitting radionuclides for detection with PET or SPECT. The longer-lived nuclei such as ιπIn or 76Br are most appropriate as there could be significant delay between tracer administration and imaging while waiting for the unbound compound to be eliminated from the bloodstream. The carrier can also be labeled with multiple copies of paramagnetic nuclei such as Gd, Fe or Mn for detection with magnetic resonance imaging (MRI). Although MRI sensitivity of tracer detection is relatively low (particularly when compared to SPECT or PET), spatial resolution is improved. In addition, MRI techniques have the added benefit of avoiding the use of ionizing radiation. e) A compound ofthe invention can be attached to a monocrystalline iron oxide (MION) particle and used for detection via MRI. f) A compound ofthe can be labeled with a fluorophore that preferentially emits in the near infrared region (700-1 OOOnm) and used for the detection of angiogenesis in tissue relatively close to the surface ofthe skin.
Accordingly, the invention provides a method for imaging and assessing neovascularization during angiogenesis comprising the steps of administering a compound ofthe present invention to a patient wherein the compound is coupled to a detectable label to form a labeled compound, allowing the labeled compound to bind to VEGFR-2, and detecting the detectable label. It is preferred that the detectable label is selected from the group consisting of 99mTc, mIn, 123I, πC, 18F, 68Ga, 76Br, 61Cu, 64Cu, Gd, Fe, Mn and a fluorophore. It is also preferred that the detecting step is performed using SPECT, 2-D planar gamma scintigraphy, PET, MRI, infrared detection, or a combination thereof. An antagonist compound ofthe invention can also be administered to a warm blooded animal, including a human, to treat a disease, condition or disorder that is responsive to a compound that antagonizes the effects of vascular endothelial cell growth factor in vivo. Thus, the present invention encompasses methods for treating a patient who would benefit from administration of a VEGFR-2 antagonist, comprising administering to the patient a therapeutically effective amount of a VEGFR-2 antagonist and thus alleviate the symptoms associated with angiogenesis in vivo. For example, an antagonist compound of this invention will find use in the treatment of diseases such as psoriasis, rheumatoid arthritis, retinopathy and cancer.
Alternatively, an agonist compound ofthe invention can be administered to a warm blooded animal, including a human, to treat a disease, condition or disorder that is responsive to a compound that agonizes the effects of vascular endothelial cell growth factor in vivo. Thus, the present invention encompasses methods for treating a patient who would benefit from administration of a VEGFR-2 agonist and thus alleviate the symptoms associated with decreased angiogenesis in vivo. For example, an agonist compound of this invention will find use in the treatment of diseases such as coronary artery disease wherein the formation of new blood vessels serving cardiac tissue at least partially remedies the decrease in blood flow from coronary vessels that are obstructed.
Accordingly, the invention includes pharmaceutical compositions comprising, as an active ingredient, at least one ofthe compounds ofthe invention in association with a pharmaceutical carrier or diluent. The composition can be administered by oral, parenteral (intramuscular, intraperitoneal, intravenous (IV) or subcutaneous) injection, transdermal (either passively or using iontophoresis or electroporation), or transmucosal (nasal, vaginal, rectal, or sublingual) routes of administration, or using bioerodible inserts, and can be formulated in dosage forms appropriate for each route of administration.
Solid dosage forms for oral administration include capsules, tablets, pills, powders, and granules. In such solid dosage forms, the active compound is admixed with at least one inert pharmaceutically acceptable carrier such as sucrose, lactose, or starch. Such dosage forms can also comprise, as is normal practice, an additional substance other than an inert diluent, e.g., a lubricating agent such as magnesium stearate. In the case of capsules, tablets, and pills, the dosage forms may also comprise a buffering agent. Tablets and pills can additionally be prepared with enteric coatings. Liquid dosage forms for oral administration include pharmaceutically acceptable emulsions, solutions, suspensions and syrups, with the elixirs containing an inert diluent commonly used in the art, such as water. These compositions can also include one or more adjuvants, such as a wetting agent, an emulsifying agent, a suspending agent, a sweetening agent, a flavoring agent or a perfuming agent. Preparations for parenteral administration include sterile aqueous or non-aqueous solutions, suspensions, and emulsions. Examples of non-aqueous solvents or vehicles are propylene glycol, polyethylene glycol, vegetable oils, such as olive oil and corn oil, gelatin, and injectable organic esters such as ethyl oleate. Such dosage forms may also contain one or more adjuvants such as a preserving agent, a wetting agent, an emulsifying agent and a dispersing agent. The dosage forms may be sterilized by, for example, filtration through a bacteria-retaining filter, by incorporating sterilizing agents into the compositions, by irradiating the compositions, or by heating the compositions. They can also be manufactured using sterile water, or some other sterile injectable medium, prior to use.
Compositions for rectal or vaginal administration are preferably suppositories which may contain, in addition to the active substance, an excipient such as cocoa butter or a suppository wax. Compositions for nasal or sublingual administration are also prepared with one or more standard excipients well known in the art.
The dosage of active ingredient in the compositions of this invention may be varied; however, it is necessary that the amount ofthe active ingredient is such that a suitable dosage form is obtained. The selected dosage depends upon the desired therapeutic effect, the route of administration, the duration ofthe treatment desired, and other factors well known to those skilled in the art. Generally, dosage levels of between 0.001 to 10 mg/kg of body weight daily are administered to mammals.
It is to be understood that while the invention has been described in conjunction with the preferred specific embodiments thereof, that the foregoing description as well as the examples which follow are intended to illustrate and not limit the scope ofthe invention. Other aspects, advantages and modifications within the scope ofthe invention will be apparent to those skilled in the art to which the invention pertains.
EXPERIMENTAL The following examples are put forth so as to provide those of ordinary skill in the art with a complete disclosure and description of how to prepare and use the compounds disclosed and claimed herein. Efforts have been made to ensure accuracy with respect to numbers (e.g., amounts, temperature, etc.) but some errors and deviations should be accounted for. Unless indicated otherwise, parts are parts by weight, temperature is in °C and pressure is at or near atmospheric.
Solid phase reactions were carried out at room temperature. Unless otherwise indicated, all starting materials and reagents were obtained commercially, e.g., from Aldrich, Sigma and ICN, and used without further purification.
Also, in these examples and throughout this specification, the abbreviations employed have their generally accepted meanings, as follows:
Ac = acetyl
Alloc = allyloxycarbonyl Boc = t-butoxycarbonyl Cbz = benzyloxycarbonyl DMF = dimethyl formamide Fmoc = fluorenylmethyl oxycarbonyl HBTU = O-(benzotriazol-l-yl)-l,l,3,3-tetramethyluronium hexafluorophosphate Pyr = pyroglutamic acid
EXAMPLES 1-8 VEGF COMPETITION ASSAYS
The peptides of Table 1 were synthesized chemically using standard solid phase techniques as described above. To evaluate binding affinity, the synthesized peptides were tested against labeled VEGF by competing for binding to VEGFR-2 in a standard scintillation proximity assay (STND SPA). Briefly stated, the binding portion of human VEGFR-2 is replicated and thereafter attached to a suitable substrate using conventional techniques. A known amount of peptide is introduced together with a standard amount of 12T labeled VEGF (I25I-VEGF-165 available from Amersham Pharmacia Biotech, Piscataway, New Jersey). After a sufficient period of time to allow for binding, the substrate is washed and a scintillation detector is used to detect I25I labeled VEGF. If scintillation is detected, the quantity of peptide used is not sufficient to displace the 125I labeled VEGF. Alternatively, if no scintillation is detected, the quantity of peptide used is sufficient to remove the I25I labeled VEGF. By testing a series of dilutions ofthe peptide, it is possible to determine the minimum amount of peptide necessary to remove 125I labeled VEGF. The procedure is then repeated for a different peptide. In this way, it is possible to determine the relative binding affinities for each peptide. Some peptides were also tested in a mouse VEGFR-2 based SPA (Mouse SPA). The testing procedure is substantially the same as that described immediately above with the exception that mouse-derived VEGFR- 2 is substituted for human VEGFR-2.
In addition, some peptides were tested for inhibiting the proliferation of human umbilical vein endothelial cells (HUVEC). By way of general procedure, human umbilical vein endothelial cells are placed on a suitable culture medium. A standard amount of VEGF along with a known amount of peptide is added to the cells. After a sufficient period of time, the cultures are inspected for detection of cell proliferation. If cell proliferation is detected, the quantity of peptide used is not sufficient to displace VEGF and consequently inhibit cell growth. Alternatively if no proliferation is detected, the quantity of peptide used is sufficient to inhibit VEGF-induced proliferation of cells. By testing a series of dilutions, it is possible to determine the minimum amount of peptide necessary to inhibit VEGF-induced proliferation of human umbilical vein endothelial cells (HUVEC). The procedure is then repeated for a different peptide. In this way, it is possible to determine the relative inhibitory effect for each peptide.
The peptides, along with their corresponding IC50 values (in nM) for standard SPA (STND SPA), HUVEC and Mouse SPA, are shown in Table 1. The results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
Table 1
Figure imgf000027_0001
"-" denotes assay not performed. EXAMPLES 9-13 N-TERMINAL TRUNCATIONS
The peptides of Table 2, each based on the sequence ERVTTCWPGEYGGVECYSVKY (SEQ ID NO: 77), were synthesized chemically using standard solid phase techniques as described infra. As seen below, each peptide is the result of effectively deleting the amino acid located on the N-terminus ofthe peptide in a sequential fashion.
The peptides were tested as described above for Examples 1-8. The peptides along with their corresponding IC50 values (in nM) for standard SPA (STND SPA) and HUVEC are shown in Table 2. The results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
Table 2
Figure imgf000028_0001
denotes assay not performed.
EXAMPLES 14-17 C-TERMINAL TRUNCATIONS The peptides of Table 3, each based on the sequence
RVTTCWPGEYGGVECYSVKY (SEQ ID NO: 95), were synthesized chemically using standard solid phase techniques as described previously. As seen in Table 3, each peptide is the result of effectively deleting the amino acid located on the C-terminus ofthe peptide in a sequential fashion. The peptides were tested as described above for Examples 1-8. The peptides along with their corresponding IC50 values (in nM) for standard SPA (STND SPA) are shown below. Again, the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
Table 3
Figure imgf000029_0001
EXAMPLES 18-23 LYSINE (K) SUBSTITUTIONS
The peptides of Table 4 were synthesized chemically using standard solid phase techniques as described previously. The amino acid lysine, however, was substituted for other amino acids.
The peptides were tested as described above for Examples 1-8. The peptides along with their corresponding IC50 values (in nM) for standard SPA (STND SPA), HUVEC and Mouse SPA are shown below. Again, the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
Table 4
Figure imgf000029_0002
"-" denotes assay not performed. EXAMPLES 24-25
C-TERMINAL AMIDATION
The peptides of Table 5 based were synthesized chemically using standard solid phase techniques as described previously. In addition, the C-terminus of each peptide was amidated using techniques well known to those skilled in the art.
The peptides were tested as described above for Examples 1-8. The peptides along with their corresponding IC50 values (in nM) for standard SPA (STND SPA) and HUVEC are shown below. As before, the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
Table 5
Figure imgf000030_0001
"-" denotes assay not performed.
EXAMPLE 26 N-TERMINAL ACETYLATION
The following peptide was synthesized chemically using standard solid phase techniques as described previously. In addition, the N-terminus ofthe peptide was acetylated using techniques well known to those skilled in the art.
The peptide was tested as described above for Examples 1-8. The peptide along with its corresponding IC50 value (in nM) for standard SPA (STND SPA) is shown below. The results ofthe assay reveals important information about the structure-activity relationship for VEGF to its receptor.
Table 6
Figure imgf000030_0002
EXAMPLES 27-31 TRYPTOPHAN (W) SUBSTITUTIONS
The peptides of Table 7 were synthesized chemically using standard solid phase techniques as described previously. The amino acid tryptophan, however, was substituted for other amino acids.
The peptides were tested as described above for Examples 1-8. The peptides along with their corresponding IC50 values (in nM) for standard SPA (STND SPA), HUVEC and Mouse SPA are shown in Table 7. Again, the results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
Table 7
Figure imgf000031_0001
denotes assay not performed.
EXAMPLES 32-34
ARGININE (R) SUBSTITUTIONS
The peptides of Table 8 were synthesized chemically using standard solid phase techniques as described previously. The amino acid arginine, however, was substituted for other amino acids.
The peptides were tested as described above for Examples 1-8. The peptides along with their corresponding IC50 values (in nM) for standard SPA (STND SPA) and HUVEC are shown below. The results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
Table 8
Figure imgf000032_0001
EXAMPLES 35-44
ALANINE SCAN
The peptides of Table 9, each based on the sequence RVTTCWPGEYGGVECYSVAY (SEQ ID NO: 106), were synthesized chemically using standard solid phase techniques as described previously. As seen below, the amino acid alanine replaces one amino acid within each peptide.
The peptides were tested as described above for Examples 1-8. The peptides along with their corresponding IC50 values (in nM) for standard SPA (STND SPA) and HUVEC are shown below. The results of these assays reveal important information about the structure-activity relationship for VEGF to its receptor.
Table 9
Figure imgf000033_0001
"-" denotes assay not performed.
* While not identical with the result of experiment 23, this HUVAC assay value is sufficiently comparable.
EXAMPLES 45-47 PEGYLATION The compounds of Table 10 were synthesized using standard solid phase techniques described above.
The peptides were tested as described above for Examples 1-8. The peptides along with their corresponding IC50 values (in nM) for standard SPA (STND SPA) are shown below. The results of these assays reveal important information about the structure- activity relationship for VEGF to its receptor. These PEGylated compounds are also expected to exhibit improved pharmacokinetic values e.g., serum half-life, bioavailablity, etc. Table 10
Figure imgf000034_0001
The compounds ofthe invention are thus ligands for VEGFR-2. In addition, the compounds ofthe invention demonstrate effective antagonism for the VEGFR-2.
EXAMPLE 48
IMAGING ANGIOGENESIS
123I is covalently attached to a compound ofthe invention using a conventional technique. The labeled compound is administered intravenously to a cancer patient in an amount sufficient to detect neovascularization in the patient's tumor. After a sufficient time has passed to allow for clearance of unbound labeled compound, the tumor-affected area is imaged using three-dimensional single photon emission computed tomography. A concentrated area of labeled-compound is detected indicating the presence of new blood vessels in the patient's tumor. In response, the patient's chemotherapy regimen is adjusted accordingly.

Claims

1. A compound comprising a peptide chain approximately 15 to 40 amino acids in length that binds to VEGFR-2 and contains a sequence of amino acids of formula (I)
(I) XjCX2X3X4X5X6GX7X8X9CX10Xj,X12 (SEQ ID NO: 1) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein Xj is S, T, Y, A, Q, V or E; X2 is W, R, Y, G, Q, F or A; X3 is P, L, T, S, A or E; X4 is G, S, A orN; X5 is E, D or A; X6 is Y, F, N or A; X7 is G or V; X8 is V, E, F, L or M; X9 is E, D, V or A; X,0 is W, Y, F or A; Xn is S, A, E, G, T, W, V, N, K or F; and X12 is L, H, R, P, Q, V, M, S or l.
2. The compound of claim 1, wherein the sequence of amino acids is selected from the group consisting of: SCWPGEYGGVECWSL (SEQ ID NO: 4);
SCWLGEYGGEECWSH (SEQ ID NO: 5);
TCWSGEYGGVECWAR (SEQ ID NO: 6);
SCWPGDFGGVECWSL (SEQ ID NO: 7);
YCWPGEYGGVDCWSP (SEQ ID NO: 8); SCWAGEYGGVECWSQ (SEQ ID NO: 9);
ACWTGEYGGEECWEL (SEQ ID NO: 10);
TCWPGEYGGVECWAV (SEQ ID NO: 11);
TCWPGEYGGVECWGR (SEQ ID NO: 12);
SCWPGEYGGVECWTV (SEQ ID NO: 13); TCWPGEYGGVECWSL (SEQ ID NO: 14);
SCWEGDNGGVECWWL (SEQ ID NO: 15);
ACWPSEYGGVECWSL (SEQ ID NO: 16);
SCWPGEFGGVECWSV (SEQ ID NO: 17);
QCWPGDYGGVDCWSV (SEQ ID NO: 18); TCWPGEYGGEECWSL (SEQ ID NO: 19);
SCWPGEFGGFDCWSM (SEQ ID NO: 20);
VCRPGEYGGEECWSL (SEQ ID NO: 21); SCWPAEYGGVECWSM (SEQ ID NO: 22);
SCWPGEYGGEECYWL (SEQ ID NO: 23);
ECYTNAAGVLECWVS (SEQ ID NO: 24);
TCWPGEYGGEECWSI (SEQ ID NO: 25); TCWPGEYGGVECYSV (SEQ ID NO: 26);
SCWPGEYGGEECWSL (SEQ ID NO: 27);
SCWPGEYGGVECYNV (SEQ ID NO: 28);
SCWPGEYGGVECWKL (SEQ ID NO: 29);
SCWPSEYGGEDCFNL (SEQ ID NO: 30); TCWPGEYGGEVCWAL (SEQ ID NO: 31);
SCWPGEYGGVDCWSV (SEQ ID NO: 32);
SCWPGEYGGVECWTL (SEQ ID NO: 33);
YCWPAEYGGVECFSP (SEQ ID NO: 34);
ACGPGEYGGEECWFV (SEQ ID NO: 35); SCWTGEYGGVECWTL (SEQ ID NO: 36);
SCWPGEYGGEVCWSL (SEQ ID NO: 37);
VCWPGEYGGVECWNV (SEQ ID NO: 38);
SCQPGEYGGMVCWSL (SEQ ID NO: 39);
VCWPGEYGGEDCWSL (SEQ ID NO: 40); SCFPSEYGGEDCWSL (SEQ ID NO: 41);
SCWEGEYGGVECWSI (SEQ ID NO: 42);
TC(l-Nal)PGEYGGVECYSV (SEQ ID NO: 43);
TC(2-Nal)PGEYGGVECYSV (SEQ ID NO: 44);
TCFPGEYGGVECYSV (SEQ ID NO: 45); ACWPGEYGGVECYSV (SEQ ID NO: 46);
TCAPGEYGGVECYSV (SEQ ID NO: 47);
TCWPGAYGGVECYSV (SEQ ID NO: 48);
TCWPGEAGGVECYSV (SEQ ID NO: 49);
TCWPGEYGGVACYSV (SEQ ID NO: 50); TCWPGEYGGVECASV (SEQ ID NO: 51); and
TCWPGEYGGVECYAV (SEQ ID NO: 52).
3. The compound of claim 2, wherein the sequence of amino acids is selected from the group consisting of:
SREVSCWPGEYGGVECWSLKE (SEQ ID NO: 53);
ARVVSCWPGEYGGVECWSLNS (SEQ ID NO: 54); PGVVSCWLGEYGGEECWSHNY (SEQ ID NO: 55);
FPLVSCWPGEYGGVECWSLKT (SEQ ID NO: 56);
TGVVTCWSGEYGGVECWARNT (SEQ ID NO: 57);
HRVDSCWPGDFGGVECWSLSE (SEQ ID NO: 58);
VRVEYCWPGEYGGVDCWSPKP (SEQ ID NO: 59); HQVVSCWAGEYGGVECWSQNA (SEQ ID NO: 60);
NRVEACWTGEYGGEECWELNL (SEQ ID NO: 61);
AGQVTCWPGEYGGVECWAVKY (SEQ ID NO: 62);
VTCWPGEYGGVECWGRKG (SEQ ID NO: 63);
ERVISCWPGEYGGVECWTVNL (SEQ ID NO: 64); SRVVTCWPGEYGGVECWSLEL (SEQ ID NO: 65);
NRVESCWEGDNGGVECWWLKY (SEQ ID NO: 66);
SGDVACWPSEYGGVECWSLHY (SEQ ID NO: 67);
HWEGSCWPGEFGGVECWSVNY (SEQ ID NO: 68);
DRMQQCWPGDYGGVDCWSVDL (SEQ ID NO: 69); HRVVTCWPGEYGGEECWSLGE (SEQ ID NO: 70);
LDVVSCWPGEFGGFDCWSMKY (SEQ ID NO: 71);
NRVLVCRPGEYGGEECWSLDY (SEQ ID NO: 72);
GGVVSCWPAEYGGVECWSMDY (SEQ ID NO: 73);
GRVESCWPGEYGGEECYWLDS (SEQ ID NO: 74); REECYTNAAGVLECWVS (SEQ ID NO: 75);
PRVVTCWPGEYGGEECWSIKY (SEQ ID NO: 76);
ERVTTCWPGEYGGVECYSVKY (SEQ ID NO: 77);
EWVVSCWPGEYGGEECWSLKY (SEQ ID NO: 78);
KRVVSCWPGEYGGVECYNVKY (SEQ ID NO: 79); TQVESCWPGEYGGVECWKLRY (SEQ ID NO: 80);
DGVVSCWPSEYGGEDCFNLHY (SEQ ID NO: 81);
RPSETCWPGEYGGEVCWALKY (SEQ ID NO: 82); SYVESCWPGEYGGVDCWSVKY (SEQ ID NO: 83);
PRVVSCWPGEYGGVDCWSVKY (SEQ ID NO: 84);
KRAVSCWPGEYGGVECWTLEY (SEQ ID NO: 85);
MRVEYCWPAEYGGVECFSPRD (SEQ ID NO: 86); SRVLACGPGEYGGEECWFVQY (SEQ ID NO: 87);
ETVESCWTGEYGGVECWTLNY (SEQ ID NO: 88);
VLEVSCWPGEYGGEVCWSLKM (SEQ ID NO: 89);
SRVEVCWPGEYGGVECWNVES (SEQ ID NO: 90);
GPVVSCQPGEYGGMVCWSLNY (SEQ ID NO: 91); ESDVVCWPGEYGGEDCWSLNY (SEQ ID NO: 92);
GRVVSCFPSEYGGEDCWSLNY (SEQ ID NO: 93);
YQVESCWEGEYGGVECWSIKL (SEQ ID NO: 94);
RVTTCWPGEYGGVECYSVKY (SEQ ID NO: 95);
VTTCWPGEYGGVECYSVKY (SEQ ID NO: 96); TTCWPGEYGGVECYSVKY (SEQ ID NO: 97);
TCWPGEYGGVECYSVKY (SEQ ID NO: 98);
RVTTCWPGEYGGVECYSVK (SEQ ID NO: 99);
RVTTCWPGEYGGVECYSV (SEQ ID NO: 100);
ERVTTCWPGEYGGVECYSVK(alloc)Y (SEQ ID NO: 101); RVTTCWPGEYGGVECYSVK(alloc)Y (SEQ ID NO: 102);
ERVTTCWPGEYGGVEC YSVRY (SEQ ID NO: 103);
RVTTCWPGEYGGVECYSVRY (SEQ ID NO: 104);
ERVTTCWPGEYGGVECYSVAY (SEQ ID NO: 105);
RVTTCWPGEYGGVECYSV AY (SEQ ID NO: 106); RVTTC(1 -Nal)PGEYGGVECYSVKY (SEQ ID NO: 107);
RVTTC(2-Nal)PGEYGGVECYSVKY (SEQ ID NO: 108);
RVTTCFPGEYGGVECYSVAY (SEQ ID NO: 109);
HVTTCWPGEYGGVECYSVRY (SEQ ID NO: 110);
GVTTCWPGEYGGVECYSVRY (SEQ ID NO: 111); (Pyr)VTTCWPGEYGGVECYSVRY (SEQ ID NO: 112);
RVTTC(l-Nal)PGEYGGVECYSVAY (SEQ ID NO: 113);
ERVTTC(l-Nal)PGEYGGVECYSVAY (SEQ ID NO: 114); RVATCWPGEYGGVECYSVAY (SEQ ID NO: 115); RVTACWPGEYGGVECYSVAY (SEQ ID NO: 116); RVTTCAPGEYGGVECYSVAY (SEQ ID NO: 117); RVTTCWPGAYGGVECYSVAY (SEQ ID NO: 118); RVTTCWPGEAGGVECYSVAY (SEQ ID NO: 119); RVTTCWPGEYGGVACYSVAY (SEQ ID NO: 120); RVTTCWPGEYGGVECASVAY (SEQ ID NO: 121); RVTTCWPGEYGGVECYAVAY (SEQ ID NO: 122); and RVTTCWPGEYGGVECYSVRA (SEQ ID NO: 123).
4. The compound of claim 1 , in the form of a dimer.
5. The compound of claim 1, containing a disulfide bond.
6. The compound of claim 1, wherein the N-terminus ofthe peptide is coupled to a polyethylene glycol molecule.
7. The compound of claim 6, wherein the PEGylated peptide is selected from the group consisting of:
(PEGj0K)-ERVTTC(l-Nal)PGEYGGVECYSVAY (SEQ ID NO: 114); (PEGj0K)-RVTTC(l-Nal)PGEYGGVECYSVAY (SEQ ID NO: 113); and (PEG5K)-ERVTTC(l-Nal)PGEYGGVECYSVAY (SEQ ID NO: 114).
8. The compound of claim 1, wherein the N-terminus ofthe peptide is acetylated.
9. The compound of claim 8, wherein the acetylated peptide is:
Ac-ERVTTCWPGEYGGVECYSVAY (SEQ ID NO: 105).
10. The compound of claim 1, wherein the C-terminus ofthe peptide is amidated.
11. The compound of claim 10, wherein the amidated peptide is: RVTTCWPGEYGGVECYSVKY(NH2) (SEQ ID NO: 95); or
ERVTTCWPGEYGGVECYSVAY(NH2) (SEQ ID NO: 105).
12. A pharmaceutical composition comprising a therapeutically effective amount ofthe compound of claim 1 in combination with a pharmaceutically acceptable carrier.
13. A method for treating a patient who would benefit from administration of a VEGFR-2 antagonist, comprising administering to the patient a therapeutically effective amount of a compound comprising a peptide chain approximately 15-40 amino acids in length that binds to VEGFR-2 (KDR) receptor and contains a sequence of amino acids having the structural formula (I)
(I) X,CX2X3X4X5X6GX7X8X9CX,0X11X,2 (SEQ ID NO: 1) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X is S, T, Y, A, Q, V or E; X2 is W, R, Y, G, Q, F or A; X3 is P, L, T, S, A or E; X4 is G, S, A orN; X5 is E, D or A; X6 is Y, F, N or A; X7 is G or V; X8 is V, E, F, L or M; X9 is E, D, V or A; X10 is W, Y, F or A; Xn is S, A, E, G, T, W, V, N, K or F; and X12 is L, H, R, P, Q,
V, M, S or I.
14. The method of claim 13, wherein the patient suffers from a disease selected from the group consisting of psoriasis, rheumatoid arthritis, retinopathy and cancer.
15. A method for imaging and assessing neovascularization during angiogenesis comprising administering a compound of claim 1 to a patient wherein the compound is coupled to a detectable label to form a labeled compound, allowing the labeled compound to bind to VEGFR-2, and detecting the detectable label.
16. The method of claim 15, wherein the detectable label is selected from the group consisting of 99mTc, In, 123I, πC, 18F, 68Ga, 76Br, 61Cu, 64Cu, Gd, Fe, Mn and a fluorophore.
17. The method of claim 15, wherein the detecting step is performed using
SPECT, 2-D planar gamma scintigraphy, PET, MRI, infrared detection, or a combination thereof.
18. A compound comprising a peptide chain approximately 8 to 40 amino acids in length that binds to VEGFR-2 and contains a sequence of amino acids of formula (II)
(II) CX1GX, 2X, 3X, 4CW (SEQ ID NO: 2) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X', is W or G; X'2 is P or A; X'3 is E or D; X'4 is G or R.
19. The compound of claim 18, wherein the sequence of amino acids is selected from the group consisting of:
CWGPEGCW (SEQ ID NO: 124);
CWGPDGCW (SEQ ID NO: 125);
CGGPEGCW (SEQ ID NO: 126); and CGGAERCW (SEQ ID NO: 127).
20. The compound of claim 19, wherein the sequence of amino acids is selected from the group consisting of:
SDSVDECWGPEGCWLE (SEQ ID NO: 128); YNTVENCWGPDGCWLD (SEQ ID NO: 129);
MSLVDKCWGPEGCWLE (SEQ ID NO: 130);
TITVGSCWGPEGCWLDSRY (SEQ ID NO: 131);
IFLGENCWGPDGCWLE (SEQ ID NO: 132);
IREGDMCWGPEGCWVD (SEQ ID NO: 133); LTLVDNCWGPDGCWLE (SEQ ID NO: 134);
ESRVDDCWGPDGCWLDPIT (SEQ ID NO: 135);
VEYVANCGGAERCWLGTNM (SEQ ID NO: 136); QDCWGPEGCWLQEQG (SEQ ID NO: 137); VLDADNCWGPEGCWLE (SEQ ID NO: 138); MSEVEDCWGPEGCWLE (SEQ ID NO: 139); NCWGPEGCWLE (SEQ ID NO: 140); SHRVDDCWGPDGCWLE (SEQ ID NO: 141); IIEVGNCWGPEGCWLE (SEQ ID NO: 142); and VDNCWGPEGCWLE (SEQ ID NO: 143).
21. The compound of claim 20, in the form of a dimer.
22. The compound of claim 18, wherein the N-terminus ofthe peptide is coupled to a polyethylene glycol molecule.
23. The compound of claim 18, wherein the N-terminus ofthe peptide is acetylated.
24. The compound of claim 18, wherein the C-terminus ofthe peptide is amidated.
25. A pharmaceutical composition comprising a therapeutically effective amount ofthe compound of claim 18 in combination with a pharmaceutically acceptable carrier.
26. A method for treating a patient who would benefit from administration of a VEGFR-2 antagonist, comprising administering to the patient a therapeutically effective amount of a compound comprising a peptide chain approximately 8 to 40 amino acids that binds to VEGFR-2 and contains a sequence of amino acids having the structural formula (II)
(II) CX',GX'2X'3X'4CW (SEQ ID NO: 2) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X', is W or G; X'2 is P or A; X'3 is E or D; X'4 is G or R.
27. The method of claim 26, wherein the patient suffers from a disease selected from the group consisting of psoriasis, rheumatoid arthritis, retinopathy and cancer.
28. A method for imaging and assessing neovascularization during angiogenesis comprising administering a compound of claim 18 to a patient wherein the compound is coupled to a detectable label to form a labeled compound, allowing the labeled compound to bind to VEGFR-2, and detecting the detectable label.
29. The method of claim 28, wherein the detectable label is selected from the group consisting of 99mTc, mIn, ,23I, nC, 18F, 68Ga, 76Br, 6,Cu, 64Cu, Gd, Fe, Mn and a fluorophore.
30. The method of claim 28, wherein the detecting step is performed using SPECT, 2-D planar gamma scintigraphy, PET, MRI, infrared detection, or a combination thereof.
31. A compound comprising a peptide chain approximately 8 to 40 amino acids in length that binds to VEGFR-2 and contains a sequence of amino acids of formula (III) (III) GWX",GX"2GX"3H (SEQ ID NO: 3) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X' is L, I or R; X"2 is V, L or I; and X"3 is E or V.
32. The compound of claim 31, wherein the sequence of amino acids is selected from the group consisting of:
GWLGVGVH (SEQ ID NO: 144); GWLGAGEHN (SEQ ID NO: 145); GWLGVGEH (SEQ ID NO: 146); GWLGLGEH (SEQ ID NO: 147); GWIGLGVH (SEQ ID NO: 148); and
GWRGIGEH (SEQ ID NO: 149).
33. The compound of claim 32, wherein the sequence of amino acids is: NASRISSGWLGVGVHNLSA (SEQ ID NO: 150); SRRRHSTGWLGAGEHNLYS (SEQ ID NO: 151); VIGRTWSGWLGVGVHNLSN (SEQ ID NO: 152); QCGRVSSGWLGVGVHNLPF (SEQ ID NO: 153);
TNQRRSSGWLGVGVHTLSP (SEQ ID NO: 154); GHKRASSGWLGVGVHKLSH (SEQ ID NO: 155); HRRRMSSGWLGVGEHKLP (SEQ ID NO: 156); SSGWLGVGVHYLSD (SEQ ID NO: 157); QRRRSSSGWLGLGEHRL (SEQ ID NO: 158);
PQRRSSSGWIGLGVHDLFN (SEQ ID NO: 159); SSRRASSGWRGIGEHNLYN (SEQ ID NO: 160); and RCSSGWLGVGVHNLS (SEQ ID NO: 161).
34. The compound of claim 31 , in the form of a dimer.
35. The compound of claim 31, wherein the N-terminus ofthe peptide is coupled to a polyethylene glycol molecule.
36. The compound of claim 31 , wherein the N-terminus ofthe peptide is acetylated.
37. The compound of claim 31, wherein the C-terminus ofthe peptide is amidated.
38. A pharmaceutical composition comprising a therapeutically effective amount ofthe compound of claim 31 in combination with a pharmaceutically acceptable carrier.
39. A method for treating a patient who would benefit from administration of a
VEGFR-2 antagonist, comprising administering to the patient a therapeutically effective amount of a compound comprising a peptide chain approximately 8 to 40 amino acids that binds to VEGFR-2 and contains a sequence of amino acids having the structural formula (III)
(III) GWX"1GX"2GX"3H (SEQ ID NO: 3) wherein each amino acid is indicated by standard one-letter abbreviation, and wherein X"j is L, I or R; X"2 is V, L or I; and X"3 is E or V.
40. The method of claim 39, wherein the patient suffers from a disease selected from the group consisting of psoriasis, rheumatoid arthritis, retinopathy and cancer.
41. A method for imaging and assessing neovascularization during angiogenesis comprising administering a compound of claim 31 to a patient wherein the compound is coupled to a detectable label to form a labeled compound, allowing the labeled compound to bind to VEGFR-2, and detecting the detectable label.
42. The method of claim 41, wherein the detectable label is selected from the group consisting of 99mTc, , nIn, 123I, πC, 18F, 68Ga, 76Br, 6ICu, 64Cu, Gd, Fe, Mn and a fluorophore.
43. The method of claim 41, wherein the detecting step is performed using SPECT, 2-D planar gamma scintigraphy, PET, MRI, infrared detection, or a combination thereof.
PCT/US2001/013598 2000-04-28 2001-04-27 Compounds having affinity for the vascular endothelial growth factor receptor-2 (vegfr-2) and associated uses WO2001083693A2 (en)

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US8642010B2 (en) 2002-03-01 2014-02-04 Dyax Corp. KDR and VEGF/KDR binding peptides and their use in diagnosis and therapy
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