WO2001023608A3 - Hybridization probes which specifically detect strains of the genera microbispora, microtetraspora, nonomuria and planobispora - Google Patents
Hybridization probes which specifically detect strains of the genera microbispora, microtetraspora, nonomuria and planobispora Download PDFInfo
- Publication number
- WO2001023608A3 WO2001023608A3 PCT/EP2000/009459 EP0009459W WO0123608A3 WO 2001023608 A3 WO2001023608 A3 WO 2001023608A3 EP 0009459 W EP0009459 W EP 0009459W WO 0123608 A3 WO0123608 A3 WO 0123608A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- nonomuria
- planobispora
- microtetraspora
- microbispora
- genera
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Analytical Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
A method is provided herein which allows for the specific detection of bateria from the genera Microbispora, Microtetraspora, Nonomuria and Planobispora. This method makes use of four specific nucleic acid probes also provided herein that are complementary to a conserved region of the 16S rRNA genes present within said strains. The probes permit rapid detection of the strains in an accurate and reproducible fashion.
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US15617199P | 1999-09-27 | 1999-09-27 | |
US60/156,171 | 1999-09-27 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2001023608A2 WO2001023608A2 (en) | 2001-04-05 |
WO2001023608A3 true WO2001023608A3 (en) | 2003-04-17 |
Family
ID=22558412
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/EP2000/009459 WO2001023608A2 (en) | 1999-09-27 | 2000-09-25 | Hybridization probes which specifically detect strains of the genera microbispora, microtetraspora, nonomuria and planobispora |
Country Status (1)
Country | Link |
---|---|
WO (1) | WO2001023608A2 (en) |
Families Citing this family (32)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US20030027135A1 (en) | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
US7226739B2 (en) | 2001-03-02 | 2007-06-05 | Isis Pharmaceuticals, Inc | Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations |
US20040121309A1 (en) | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues |
US7666588B2 (en) | 2001-03-02 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy |
US8073627B2 (en) | 2001-06-26 | 2011-12-06 | Ibis Biosciences, Inc. | System for indentification of pathogens |
US7217510B2 (en) | 2001-06-26 | 2007-05-15 | Isis Pharmaceuticals, Inc. | Methods for providing bacterial bioagent characterizing information |
EP1578399A4 (en) | 2002-12-06 | 2007-11-28 | Isis Pharmaceuticals Inc | Methods for rapid identification of pathogens in humans and animals |
US8057993B2 (en) | 2003-04-26 | 2011-11-15 | Ibis Biosciences, Inc. | Methods for identification of coronaviruses |
US7964343B2 (en) | 2003-05-13 | 2011-06-21 | Ibis Biosciences, Inc. | Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
US8158354B2 (en) | 2003-05-13 | 2012-04-17 | Ibis Biosciences, Inc. | Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
US8097416B2 (en) | 2003-09-11 | 2012-01-17 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
US8546082B2 (en) | 2003-09-11 | 2013-10-01 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
US20120122101A1 (en) | 2003-09-11 | 2012-05-17 | Rangarajan Sampath | Compositions for use in identification of bacteria |
US8163895B2 (en) | 2003-12-05 | 2012-04-24 | Ibis Biosciences, Inc. | Compositions for use in identification of orthopoxviruses |
US7666592B2 (en) | 2004-02-18 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for concurrent identification and quantification of an unknown bioagent |
WO2005117270A2 (en) | 2004-05-24 | 2005-12-08 | Isis Pharmaceuticals, Inc. | Mass spectrometry with selective ion filtration by digital thresholding |
US20050266411A1 (en) | 2004-05-25 | 2005-12-01 | Hofstadler Steven A | Methods for rapid forensic analysis of mitochondrial DNA |
US7811753B2 (en) | 2004-07-14 | 2010-10-12 | Ibis Biosciences, Inc. | Methods for repairing degraded DNA |
US8084207B2 (en) | 2005-03-03 | 2011-12-27 | Ibis Bioscience, Inc. | Compositions for use in identification of papillomavirus |
CA2600184A1 (en) | 2005-03-03 | 2006-09-08 | Isis Pharmaceuticals, Inc. | Compositions for use in identification of adventitious viruses |
AU2006272776B2 (en) | 2005-07-21 | 2012-01-19 | Ibis Biosciences, Inc. | Methods for rapid identification and quantitation of nucleic acid variants |
US9149473B2 (en) | 2006-09-14 | 2015-10-06 | Ibis Biosciences, Inc. | Targeted whole genome amplification method for identification of pathogens |
EP2126132B1 (en) | 2007-02-23 | 2013-03-20 | Ibis Biosciences, Inc. | Methods for rapid foresnsic dna analysis |
US9598724B2 (en) | 2007-06-01 | 2017-03-21 | Ibis Biosciences, Inc. | Methods and compositions for multiple displacement amplification of nucleic acids |
EP2344893B1 (en) | 2008-09-16 | 2014-10-15 | Ibis Biosciences, Inc. | Microplate handling systems and methods |
EP2347254A2 (en) | 2008-09-16 | 2011-07-27 | Ibis Biosciences, Inc. | Sample processing units, systems, and related methods |
EP2349549B1 (en) | 2008-09-16 | 2012-07-18 | Ibis Biosciences, Inc. | Mixing cartridges, mixing stations, and related kits, and system |
EP2396803A4 (en) | 2009-02-12 | 2016-10-26 | Ibis Biosciences Inc | Ionization probe assemblies |
WO2011008971A1 (en) | 2009-07-17 | 2011-01-20 | Ibis Biosciences, Inc. | Lift and mount apparatus |
WO2011008972A1 (en) | 2009-07-17 | 2011-01-20 | Ibis Biosciences, Inc. | Systems for bioagent identification |
ES2628739T3 (en) | 2009-10-15 | 2017-08-03 | Ibis Biosciences, Inc. | Multiple displacement amplification |
EP2915884B1 (en) * | 2014-03-03 | 2017-12-06 | Fundacio Institut d'Investigació Biomèdica de Girona Dr. Josep Trueta | Method for diagnosing colorectal cancer from a human feces sample by quantitive PCR |
Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0586112A2 (en) * | 1992-08-14 | 1994-03-09 | Pharma Gen, S.A. | Control of PCR mediated detection of micro-organisms |
WO1995013396A2 (en) * | 1993-11-11 | 1995-05-18 | U-Gene Research B.V. | A method for identifying microorganisms, and aids useful thereof |
DE19732086A1 (en) * | 1997-07-25 | 1999-01-28 | Univ Leipzig | Quantification of eubacteria in competitive polymerase chain reaction |
WO1999014361A1 (en) * | 1997-09-18 | 1999-03-25 | Merck Sharp & Dohme De Espana, S.A.E. | Hybridization probes which differentiate between streptomycetes and maduromycetes |
WO1999035285A2 (en) * | 1998-01-08 | 1999-07-15 | Merck Sharp & Dohme De Espana, S.A.E. | Hybridization probes which differentiate between the actinomadura madurae group of bacteria and maduromycetes |
-
2000
- 2000-09-25 WO PCT/EP2000/009459 patent/WO2001023608A2/en active Application Filing
Patent Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0586112A2 (en) * | 1992-08-14 | 1994-03-09 | Pharma Gen, S.A. | Control of PCR mediated detection of micro-organisms |
WO1995013396A2 (en) * | 1993-11-11 | 1995-05-18 | U-Gene Research B.V. | A method for identifying microorganisms, and aids useful thereof |
DE19732086A1 (en) * | 1997-07-25 | 1999-01-28 | Univ Leipzig | Quantification of eubacteria in competitive polymerase chain reaction |
WO1999014361A1 (en) * | 1997-09-18 | 1999-03-25 | Merck Sharp & Dohme De Espana, S.A.E. | Hybridization probes which differentiate between streptomycetes and maduromycetes |
WO1999035285A2 (en) * | 1998-01-08 | 1999-07-15 | Merck Sharp & Dohme De Espana, S.A.E. | Hybridization probes which differentiate between the actinomadura madurae group of bacteria and maduromycetes |
Non-Patent Citations (5)
Title |
---|
BARRY T ET AL: "THE 16S/23S RIBOSOMAL SPACER REGION AS A TARGET FOR DNA PROBES TO IDENTIFY EUBACTERIA", PCR METHODS & APPLICATIONS,US,COLD SPRING HARBOR LABORATORY PRESS, vol. 1, 1991, pages 51 - 56, XP000609831, ISSN: 1054-9803 * |
GIOVANNONI S J ET AL.: "Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells", JOURNAL OF BACTERIOLOGY, vol. 170, no. 2, 1988, pages 720 - 726, XP000991116 * |
STACKEBRANDT ET AL: "Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes", APPLIED AND ENVIRONMENTAL MICROBIOLOGY,US,WASHINGTON,DC, vol. 57, no. 5, 1 May 1991 (1991-05-01), pages 1468 - 1477, XP002090717, ISSN: 0099-2240 * |
WANG ET AL: "Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora", INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY,US,NEW YORK, NY, vol. 46, no. 3, 1 July 1996 (1996-07-01), pages 658 - 663, XP002090716 * |
ZHANG Z ET AL.: "Reclassification of Thermomonospora and Microtetraspora", INTERNATIONAL JOURNAL OD SYSTEMATIC BACTERIOLOGY, vol. 48, 1998, pages 411 - 422, XP000991112 * |
Also Published As
Publication number | Publication date |
---|---|
WO2001023608A2 (en) | 2001-04-05 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
WO2001023608A3 (en) | Hybridization probes which specifically detect strains of the genera microbispora, microtetraspora, nonomuria and planobispora | |
WO2001094632A3 (en) | Highly sensitive gene detection and localization using in situ branched-dna hybridization | |
EP1746156A4 (en) | Probe and primer for tubercle bacillus detection, and method of detecting human tubercle bacillus therewith | |
WO1996036736A3 (en) | Wide dynamic range nucleic acid detection using an aggregate primer series | |
WO2004013357A3 (en) | Nucleotide sequences specific to francisella tularensis and methods for the detection of francisella tularensis | |
WO1998017829A3 (en) | Nucleic acid primers and probes for detecting oncogenic human papillomaviruses | |
WO2000040749A3 (en) | Method for the detection of gene transcripts in blood and uses thereof | |
WO2001036681A3 (en) | Immunological detection of rna:dna hybrids on microarrays | |
WO2006076047A3 (en) | Electrocatalytic nucleic acid hybridization detection | |
WO2000046407A3 (en) | Methods of utilizing the tt virus | |
EP0915174A4 (en) | Method for detecting target nucleotide sequence | |
EP0803578A3 (en) | Kit for amplification and detection of nucleic acid of cytomegalovirus (cmv) utilizing a nucleic acid sequence (ss2.7) | |
WO1998014611A3 (en) | Detection and identification of non-polio enteroviruses | |
WO2004044163A3 (en) | Methods for identifying risk of melanoma and treatments thereof | |
HK1068377A1 (en) | Analytical method and kit | |
DE69332666D1 (en) | METHOD FOR SIMPLE NUCLEOTIDE PRIMER EXTENSION FOR DETECTING SPECIFIC ALLELS AND KIT SUITABLE FOR THIS | |
WO2002018660A3 (en) | Detection of varicella-zoster virus | |
WO2001068913A3 (en) | Nucleic acid detection method and system | |
WO2002059367A3 (en) | Diagnostic microarray for inflammatory bowel disease, crohn's disease and ulcerative colitis | |
ATE309389T1 (en) | METHOD FOR DISCOVERING TELOMERASE ACTIVITY | |
DE60019625D1 (en) | NUCELIC ACID PRIMER AND SAMPLES FOR DETECTING TUMOR CELLS | |
WO1997046709A3 (en) | NUCLEIC ACID PRIMERS AND PROBES FOR DETECTING $i(CHLAMYDIA PNEUMONIAE) | |
CA2145719A1 (en) | Detection of Nucleic Acid Amplification | |
EP0950718A4 (en) | Method for detecting dna with probe pna | |
WO2005056829A3 (en) | Method for diagnosis/prognosis of breast cancer |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
AK | Designated states |
Kind code of ref document: A2 Designated state(s): CA JP US |
|
AL | Designated countries for regional patents |
Kind code of ref document: A2 Designated state(s): AT BE CH CY DE DK ES FI FR GB GR IE IT LU NL PT SE |
|
121 | Ep: the epo has been informed by wipo that ep was designated in this application | ||
DFPE | Request for preliminary examination filed prior to expiration of 19th month from priority date (pct application filed before 20040101) | ||
122 | Ep: pct application non-entry in european phase | ||
NENP | Non-entry into the national phase |
Ref country code: JP |