WO2000056444A2 - Interaction orientee dans l'espace sur surface solide - Google Patents

Interaction orientee dans l'espace sur surface solide Download PDF

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Publication number
WO2000056444A2
WO2000056444A2 PCT/EP2000/002578 EP0002578W WO0056444A2 WO 2000056444 A2 WO2000056444 A2 WO 2000056444A2 EP 0002578 W EP0002578 W EP 0002578W WO 0056444 A2 WO0056444 A2 WO 0056444A2
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WO
WIPO (PCT)
Prior art keywords
flow
liquid
flow path
hydrodynamically focused
target surface
Prior art date
Application number
PCT/EP2000/002578
Other languages
English (en)
Other versions
WO2000056444A3 (fr
Inventor
Gert Blankenstein
Anders Weber
Thomas Ahl
Martin Bonde
Original Assignee
Torsana Biosensor A/S
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from GBGB9906827.2A external-priority patent/GB9906827D0/en
Priority claimed from GBGB9921950.3A external-priority patent/GB9921950D0/en
Application filed by Torsana Biosensor A/S filed Critical Torsana Biosensor A/S
Priority to JP2000606339A priority Critical patent/JP2002539918A/ja
Priority to AU34314/00A priority patent/AU3431400A/en
Priority to EP00912637A priority patent/EP1169122A2/fr
Publication of WO2000056444A2 publication Critical patent/WO2000056444A2/fr
Publication of WO2000056444A3 publication Critical patent/WO2000056444A3/fr

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    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J19/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J19/0046—Sequential or parallel reactions, e.g. for the synthesis of polypeptides or polynucleotides; Apparatus and devices for combinatorial chemistry or for making molecular arrays
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01F—MIXING, e.g. DISSOLVING, EMULSIFYING OR DISPERSING
    • B01F33/00—Other mixers; Mixing plants; Combinations of mixers
    • B01F33/30—Micromixers
    • B01F33/301—Micromixers using specific means for arranging the streams to be mixed, e.g. channel geometries or dispositions
    • B01F33/3011—Micromixers using specific means for arranging the streams to be mixed, e.g. channel geometries or dispositions using a sheathing stream of a fluid surrounding a central stream of a different fluid, e.g. for reducing the cross-section of the central stream or to produce droplets from the central stream
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01F—MIXING, e.g. DISSOLVING, EMULSIFYING OR DISPERSING
    • B01F33/00—Other mixers; Mixing plants; Combinations of mixers
    • B01F33/30—Micromixers
    • B01F33/3039—Micromixers with mixing achieved by diffusion between layers
    • B—PERFORMING OPERATIONS; TRANSPORTING
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    • B01J19/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J19/0093—Microreactors, e.g. miniaturised or microfabricated reactors
    • F—MECHANICAL ENGINEERING; LIGHTING; HEATING; WEAPONS; BLASTING
    • F15—FLUID-PRESSURE ACTUATORS; HYDRAULICS OR PNEUMATICS IN GENERAL
    • F15C—FLUID-CIRCUIT ELEMENTS PREDOMINANTLY USED FOR COMPUTING OR CONTROL PURPOSES
    • F15C1/00—Circuit elements having no moving parts
    • F15C1/08—Boundary-layer devices, e.g. wall-attachment amplifiers coanda effect
    • G—PHYSICS
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    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N15/00—Investigating characteristics of particles; Investigating permeability, pore-volume or surface-area of porous materials
    • G01N15/10—Investigating individual particles
    • G01N15/14—Optical investigation techniques, e.g. flow cytometry
    • G01N15/1404—Handling flow, e.g. hydrodynamic focusing
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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    • B01J2219/00277—Apparatus
    • B01J2219/00497—Features relating to the solid phase supports
    • B01J2219/00527—Sheets
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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    • B—PERFORMING OPERATIONS; TRANSPORTING
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    • B—PERFORMING OPERATIONS; TRANSPORTING
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    • B01J2219/00583—Features relative to the processes being carried out
    • B01J2219/00603—Making arrays on substantially continuous surfaces
    • B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00583—Features relative to the processes being carried out
    • B01J2219/00603—Making arrays on substantially continuous surfaces
    • B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
    • B01J2219/00608—DNA chips
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00583—Features relative to the processes being carried out
    • B01J2219/00603—Making arrays on substantially continuous surfaces
    • B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
    • B01J2219/0061—The surface being organic
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
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    • B01J2219/00583—Features relative to the processes being carried out
    • B01J2219/00603—Making arrays on substantially continuous surfaces
    • B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
    • B01J2219/00612—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports the surface being inorganic
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00583—Features relative to the processes being carried out
    • B01J2219/00603—Making arrays on substantially continuous surfaces
    • B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
    • B01J2219/00623—Immobilisation or binding
    • B01J2219/00626—Covalent
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
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    • B01J2219/00583—Features relative to the processes being carried out
    • B01J2219/00603—Making arrays on substantially continuous surfaces
    • B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
    • B01J2219/00632—Introduction of reactive groups to the surface
    • B01J2219/00637—Introduction of reactive groups to the surface by coating it with another layer
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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    • B01J2219/00583—Features relative to the processes being carried out
    • B01J2219/00603—Making arrays on substantially continuous surfaces
    • B01J2219/00659—Two-dimensional arrays
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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    • B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/0068—Means for controlling the apparatus of the process
    • B01J2219/00702—Processes involving means for analysing and characterising the products
    • B—PERFORMING OPERATIONS; TRANSPORTING
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    • B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00718—Type of compounds synthesised
    • B01J2219/0072—Organic compounds
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00718—Type of compounds synthesised
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    • B01J2219/00722—Nucleotides
    • C—CHEMISTRY; METALLURGY
    • C40—COMBINATORIAL TECHNOLOGY
    • C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B40/00—Libraries per se, e.g. arrays, mixtures
    • C40B40/04—Libraries containing only organic compounds
    • C40B40/06—Libraries containing nucleotides or polynucleotides, or derivatives thereof
    • C—CHEMISTRY; METALLURGY
    • C40—COMBINATORIAL TECHNOLOGY
    • C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B60/00—Apparatus specially adapted for use in combinatorial chemistry or with libraries
    • C40B60/14—Apparatus specially adapted for use in combinatorial chemistry or with libraries for creating libraries
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N15/00—Investigating characteristics of particles; Investigating permeability, pore-volume or surface-area of porous materials
    • G01N15/10—Investigating individual particles
    • G01N15/14—Optical investigation techniques, e.g. flow cytometry
    • G01N15/149—Optical investigation techniques, e.g. flow cytometry specially adapted for sorting particles, e.g. by their size or optical properties
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N15/00—Investigating characteristics of particles; Investigating permeability, pore-volume or surface-area of porous materials
    • G01N15/10—Investigating individual particles
    • G01N15/14—Optical investigation techniques, e.g. flow cytometry
    • G01N15/1404—Handling flow, e.g. hydrodynamic focusing
    • G01N2015/1413—Hydrodynamic focussing
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N15/00—Investigating characteristics of particles; Investigating permeability, pore-volume or surface-area of porous materials
    • G01N15/10—Investigating individual particles
    • G01N15/14—Optical investigation techniques, e.g. flow cytometry
    • G01N15/1404—Handling flow, e.g. hydrodynamic focusing
    • G01N2015/1415—Control of particle position

Definitions

  • the present invention relates to methods for performing interactions between a liquid or a component of the liquid and a solid surface, such as chemical reactions which may for instance be immobilisation or synthesis reactions on a solid surface, in which the location at which the interaction occurs is spatially defined by hydrodynamic focusing or by electrodynamic focusing.
  • the flow is introduced through an inlet aligned with the centre line of the trench.
  • Two other inlets on either side of first inlet introduce a guide buffer flow.
  • the lateral position of the switchable flow within the trench is varied. This determines through which of two outlets at the other end of the trench the hydrodynamically focused switchable flow exits.
  • WO98/10267 (Technical University of Denmark) describes passing a fluid containing particles through a micro flow channel guided between two buffer streams.
  • the position of the particle containing flow stream within the channel may be adjusted by regulation of the volumetric ratio between the flow rate of the particle containing flow and the guiding buffer flows.
  • the cross-section of the particle containing flow may thereby be regulated to be little more than the diameter of the particles, so that they pass one at a time.
  • Particles may be dragged out of the particle containing flow by laterally disposed magnets.
  • electrodes may be used to separate particles by electrophoretic or dielectrophoretic forces. Particles may be temporarily held in fixed positions in the flow channel by electrodes to allow chemical reactions to take place.
  • a field may be generated along the flow channel, as by a magnet at one end of the channel, and particles may be caused to migrate along the channel according to their susceptibility to the field.
  • Particles may be deflected to an outlet which is opened only m response to the presence of such a particle. Particles may be entrapped by a magnet and then released to flow to an outlet at a high concentration. Different sub-populations of particles may be sorted to emerge via multiple outlets.
  • a microchip bearing an array of oligonucleotides can be placed m the micro flow channel system allowing several steps of washing, staining and reagent addition to be integrated m an automated routine in a flow through mode.
  • Immunosensor arrays can be used in the same way.
  • the channel may have a plurality of assay sites located in the channel and comprising immobilised reagents. Field generating means may be provided at the assay sites for attracting and lmmooilising reagents cr rejecting them from the site. Such sites may form a two- ⁇ imensional grid of sites neanng respective reagents.
  • Kenis et al (Paul A. Kenis, Rusten F. Ismagilov, George M. Whitesides: Science Vol. 285, 2 July 1999) published after the priority dates hereof, described the use of a guided, focused stream to carry out various reactions along a path over a solid surface, with positioning of the fabricated features to within a few percent of the channel width.
  • Electrodynamic focusing also known as electrokmetic focusing
  • US-A-5858187 Electrodynamic focusing
  • a flow of sample material across an intersection formed by a sample channel and two focusing channels can be confined to less than the width of the sample channel and that the focused flow can be laterally guided.
  • Two modes of operation are disclosed. In one mode, there is a flow of sample liquid which is focused by two streams of focusing liquid produced by electro-osmotic forces.
  • the surface of the channel is coated to clock the production of electro-osmotic force and liquid flow is prevented or is minimised.
  • lonically charged materials m the sample are transported by electrophoretic force and follow lines of electric potential which produce focusing of the sample material .
  • the present invention now provides according to a first aspect a method for producing an interaction between a hydrodynamically focused liquid or a component of said hydrodynamically focused liquid and a selected region of a target surface comprising: providing said target surface as part of one of a plurality of surfaces together defining a flow path for liquid, the surface containing the target surface serving to define the width of the flow path, providing for said flow path a set of at least three fluid inlets and at least one fluid outlet such tnat a flow of said hydrodynamically focused liquid can oe directed into the flow path through one said inlet guided between two flows of guidance liquid introduced via the two other said inlets to leave said flow path through said at least one outlet,
  • the method further comprises re-adjustmg the flows of guidance liquid such that the flow of said liquid is directed over a second selected region of said target surface and allowing said hydrodynamically found liquid or a component thereof to interact with said second selected region of said surface.
  • said process of re-ad ustment and interaction with a further selected region of the surface is repeated multiple times, e.g. at least 3 times, preferably at least 5 times, using the same target surface.
  • Said interaction between said hydrodynamically focused liquid and said target surface may involve a chemical reaction.
  • the interaction may be the capture of a species in the liquid by a magnetic field attracting said species to the surface. It may be the capture of a species m the liquid to the surface by virtue of an inherent affinity, whether chemical or physical, between the surface and the substance.
  • the term 'surface' m this context is not restricted to the upper boundary of the bulk substrate defining the flow channel but includes any material already present thereon.
  • the affinity may be due to the presence of one or more sources of magnetic attraction associated with the surface.
  • one or more magnets may be used to attract paramagnetic beads out of a suspension in a liquid directed over a target region of the magnetically attractive surface
  • an electrically charged surface may be used to attract and hold electrostatically or dielectrically attractable particles out of a liquid.
  • the interaction in question is in the nature of a Oinding of the substance m question to the surface it will be of a desired and generally specific nature and will not include a random or non-specific Oinding to the surface
  • a chemical reaction is responsible for the interaction it may involve the formation of covalent or non- covalent bonds and may or may not involve the immobilisation of any substance to the surface as a result of the interaction.
  • Said reaction may comprise immobilising a first nucleotide or oligonucleotide on said surface. It may comprise covalently adding a further nucleotide or oligonucleotide to a nucleotide or oligonucleotide already immobilised on said surface . Said reaction may comprise immobilising a first ammo acid residue or a peptide on said surface. It may comprise covalently adding a further amino acid or peptide to one already immobilised on said surface.
  • the flow of liquid through said flow path is preferably at a Reynolds number of no more than 10, but often it will be much less tnan this, for instance no more than 5, and generally no more than 1.
  • the linear flow rate through the flow channel may be quite high even at these low Reynolds numbers because of the small channel dimensions.
  • the volume flow rate might suitably be from C.l to 100 ⁇ l/min. which corresponds to a linear flow rate of from 0.01
  • the flows of hydrodynamically focused liquid and of guidance liquid may be produced by mechanical pumps, which preferably are electrically operated. However, the flow required for hydrodynamic focusing may alternatively be produced by electro-osmotic forces. If desired, the flow of one or more of the liquid streams may be produced by a pu ⁇ p and the flow of one or more of the other liquid streams may be induced by electro-osmotic force.
  • the substrate m which said flow channel is formed may be made from any one of a large number of materials. Desirable properties are a high level of rigidity and tne ability to present an extremely smooth surface e.g. with better than ⁇ 3 ⁇ m, preferably better than ⁇ 1 ⁇ m, most preferably no more than -t 0.5 ⁇ m roughness. For many applications chemical inertness and an absence of nonspecific binding for the hydrodynamically focused liquid or its components will be desired.
  • the substrate should lend itself to the formation therein of a precisely dimensioned trench either by etching or an alternative process of material removal or by moulding. Suitable materials include glass, fused silica or silicon, in which substrates the flow channel may be formed as a trench by etching.
  • An alternative preferred material is an engineering polymer such as polycarbonate, polypropylene, or polymethyl - methacrylate which can be precisely injection moulded to form a shaped substrate providing such a trench for the flow channel.
  • Such materials may be injection moulded using a nickel casting of an etched silicon master.
  • the surface of the substrate may be modified to increase its smoothness, to alter its hydrophobicity (e.g. by plasma polymerisation of plastics) or its chemical inertness (e.g. by gold coating by vacuum deposition), if desired in selected locations.
  • silica is a suitable surface for this purpose as when m contact with an aqueous buffer liquid it will bear charged S ⁇ -0 ions.
  • electrophoresis will be suitable as substrates for use according to this aspect of the invention.
  • a roof may then provided over the trench to complete the flow channel, suitably by attaching a cover plate by adhesive.
  • the cover plate may be of the same types of materials as are mentioned above but need not specifically be of the same material as the substrate containing the trench.
  • the cover plate may be supported at a constant height across the width of the trench by pillar members.
  • the underside of the cover may be used as the surface on which the liquid interacts instead of the floor of the trench.
  • the method may include introducing multiple guided streams, each being contained between a respective pair of guiding streams.
  • Adjacent guided streams may be separated by a single guiding stream and only the outermost guiding streams need have their flow rates selected to position the guided streams laterally m the flow channel. All of the guided streams with the guiding streams which lie between them may be moved laterally together, maintaining a constant spacing between the guided streams.
  • a further guiding stream may be introduced to flow between a base wall of the flow path and the other guiding streams and the guided stream (s) .
  • a still further guiding stream may be introduced to flow between a top wall of the flow path and the other streams.
  • the flow rate of these lower and/or upper guiding streams may be varied to adjust their thickness and may be interrupted to allow the other streams to contact the top or base wall as desired.
  • a second interaction may be conducted between a product of said first interaction and a second hydrodynamically focused liquid or component thereof at a selected sub-region forming part of said selected region by a method comprising: providing a second plurality of surfaces together defining a second flow path for liquid flow such that one of said surfaces intersects and has a portion m common with said target surface, the dimension of said one surface transverse to the direction of said second flow path defining the width of the second flow path,
  • a method for producing an interaction between hydrodynamically focused liquids or components of said hydrodynamically focused liquids at a selected region of a target surface comprising: providing said target surface at an intersection formed by two crossing flow paths defined by respective sets of flow path bounding surfaces,
  • each said set of bounding surfaces comprising a surface having a width that defines the width of its respective flow path, the target surface oemg defined by tne intersection of said width defining surfaces, providing for each flow path a set of at least three fluid inlets and at least one fluid outlet such that for each flow path, a flow of hydrodynamically focused liquid can be directed into the flow path through one said inlet guided between two flows of guidance liquid introduced via two other said inlets to leave said flow path via said at least one outlet,
  • each flow path control means providing for said two guidance liquid inlets of each flow path control means such that the proportion of the total flow of guidance liquid introduced on each side of the hydrodynamically focused liquid can be varied to position the flow of hydrodynamically focused liquid laterally within the respective flow path
  • the invention includes apparatus for use m accordance with the second aspect of the invention by producing an interaction between hydrodynamically focused liquids or components of said hydrodynamically focused liquids a: a selected region of a target surface comprising: a substrate defining said target surface at an intersection formed by two crossing flow paths defined by respective sets of flow path bounding surfaces of the substrate ,
  • each said set of bounding surfaces comprising a surface having a width that defines the width of its respective flow path, the target surface being defined by the intersection of said width defining surfaces, a set of at least three fluid inlets and at least one fluid outlet associated with each said flow path sucn that for each flow path, a flow of hydrodynamically focused liquid can be directed into tne flow path through one said inlet guided between two flows of guidance liquid introduced via two other said inlets to leave said flow path via said at least one outlet, and
  • flow control means associated with said two guidance liquid inlets of each flow path such that tne proportion of the total flow of guidance liquid introduced on each side of the respective hydrodynamically focused liquid can be varied to position the flow of hydrodynamically focused liquid laterally within the respective flow path.
  • the apparatus may further comprise means for producing said flow of hydrodynamically focused liquid and means for producing said flows of guidance liquid.
  • Said means may comprise a respective pump for each flow.
  • Said flow control means may then be constituted by means for controlling the rate at which each pump operates or by means for controlling the resistance to flow against which each pump works
  • the pumps may be positioned upstream or downstream of the flow channel (s) .
  • the means for producing the required flow may be electrodes provided upstream and downstream of said intersection m the flow path for the hydrodynamically focused liquid and m the flow path of each guidance liquid and the means for controlling the flow may then be constituted by means for adjusting the respective voltages applied to the electrodes.
  • Such apparatus preferably further comprises a detector for detecting and/or quantitating at selected locations of said target surface products or results of the interactions of said hydrodynamically focused liquids.
  • the detector may by way of example be a fluorescence detector, a radioactivity detector, a microscope, a confocal microscope, a luminescence detector, a spectrophotometer , or a photo- luminescence detector.
  • An appropriately responsive photographic film e.g. an X-ray film, may be used on the detector .
  • Means may be provided which is responsive to an output from such a detector provided as an input signal to said means and serving to deflect at least the guided flow to a selected outlet when an event is detected at said detector.
  • Such an event may be the passage of a particle such as a cell which it is desired to capture or the passage of a bead bearing a marker which it is desired to capture.
  • the surface of the channel may be coated by a material having affinity for one or more materials which it is desired to remove from the guided stream.
  • the guided stream may contain particles such as cells which are substantially bigger than the materials to be removed.
  • the particles may be labelled with a detectable marker and different particles may be labelled with respective different markers, e.g. four fluorescent markers as used m the four colour DNA sequencing techniques, each having its own respective colour of fluorescence.
  • the guided stream containing the marked particle may be deflected to a respective outlet.
  • Particles may be deflected to the appropriate outlet either by rapid rebalancing of the guiding flows or by a suction of liquid towards the desired outlet. This may be generated in a known manner by a piezo electric pump element in the outlet flow path.
  • cells may be coated over the channel surface and may be stimulated by different materials flowed respective lanes one direction and tested for the result of said stimulation by different materials flowed in respective lanes in a crosswise direction.
  • the cells may be stimulated by combinations of materials flowed m respective lanes in crossing directions.
  • electrodes may be provided below the suostrate surface or at the substrate surface order to enaole the user of the array to carry out electrically promoted hybridisation or denaturation, as known the art.
  • a method for producing an interaction between a component of a liquid and a selected region of a target surface comprising providing a said target surface in contact with a medium through which charged molecules can be caused to migrate, providing oppositely charged driving electrodes at opposed locations of said target surface m electrical contact with said medium to define a migration path between said driving electrodes, providing guiding electrodes of like charge on opposed sides of said migration path in electrical contact with said medium, supplying charged molecules to a starting location said medium m said migration path and causing said molecules to migrate in said migration path away from one said driving electrode and towards the other said driving electrode whilst laterally electrodynamically focusing said migrating charged molecules to confine their movement within substantially less than the whole width of said migration path by the application of controlled voltages to said guiding electrodes so that the molecules migrate over said selected region of said target surface, and allowing said electrodynamically focused molecules to interact with said target surface.
  • Such a method provides focusing by the use of electrophoretic force rather than by hydrodynamic focusing.
  • the method may readily be adapted to provide electrodynamically focused migration first in one direction and subsequently in a second direction crosswise of the first direction a similar manner to tnat in which hydrodynamic focusing is used according to the second aspect of the invention. Interactions may be carried out and monitored generally as described above in the context of the first and second aspects of the invention.
  • Figure 1 shows plan view an example of apparatus in use a method according to the first aspect of the invention
  • Figure 2 shows in plan view apparatus according to the invention suited for use m accordance with the second aspect of the invention
  • Figure 3 shows plan view a detail of the apparatus of Figure 2 in use a method in accordance with the second aspect of the invention
  • Figure 4 shows schematically a section on the line IV- IV Figure 2 ;
  • Figure 5 shows in plan view an alternative apparatus for use accordance with the first aspect of the invention
  • Figure 6 shows in plan view apparatus for use accordance with the third aspect of the invention.
  • Figure 7 shows in schematic plan view at (a) and in cross-section at (b) a modified form of the apparatus of Figure 1 in which multiple guided streams are provided;
  • Figure 8 shows schematically in transverse cross- section at (a) in longitudinal cross-section at (b) and in plan view at (c) an alternative modification of the apparatus of Figure 1 in which a lower guiding flow is provided;
  • Figure 9 shows a fluid switching set-up for use witn the apparatus of Figure 1 ;
  • Figure 10 shows the output of a digital camera monitoring an interaction apparatus generally m accordance with Figure 1 (Example 1) ;
  • Figure 11 shows a similar interaction taking place in apparatus generally m accordance with Figure 2 (Example 2 ) ;
  • Figure 12 schematically illustrates apparatus used m cell sorting and purification
  • Figure 13 schematically illustrates apparatus used Example 3.
  • apparatus for use in accordance with the method of the first aspect of the invention comprises a substrate 10.
  • This is preferably chosen to be a material of high dimensional stability capable of being formed with a flow channel 12 of precisely defined and stable dimensions.
  • the flow channel 12 takes the form of a trench having a floor 14 and side walls 16.
  • a roof 18 (as in Figure 4) is provided over the trench by a plate suitably of the same material cemented over the trench.
  • the flow channel defines a flow path which extends left to right in the drawing and has at its upstream end three inlets for liquid.
  • the centre inlet 20 is for a guided flow of hydrodynamically focused liquid 26.
  • Each of the inlets 22 and 24 is for a respective guiding flow of guidance liquid 28.
  • the end of the flow path provided with an outlet for the liquids at 30. Eacn of the inlets and the outlet has a respective flow control valve 32,34,36,38 (as m Figure 2).
  • the dimensions of the flow channel may be chosen within wide limits according to the nature of the interaction it is desired to carry out.
  • the mam limiting factor will generally be the need to maintain supstantially pure laminar flow so that the hydrodynamically focused liquid and the guidance liquids do not mix.
  • the width may be up to 10mm or more. Pillars may be provided extending between the floor and the roof of the flow cnannel to maintain the appropriate height spacing.
  • the appropriate length to height to width relationship is chosen to maintain laminar flow at the chosen flow rate, according to known formulae .
  • Liquids are suitably driven through the apparatus by the use of syringe pumps or similar, suitably driven by stepper motors .
  • a solution of a first desired base a suitably reactive form (let us say adenme (A) ) is introduced as flow 26 of hydrodynamically focused liquid and two flows of guidance buffer are introduced through inlets 22 and 24.
  • the proportions of the total flow of guidance buffer introduced through these respective inlets are chosen so that the flow 26 is deflected laterally (vertically in the drawing) to the desired extent and in the desired direction from the centre line so that the hydrodynamically focused flow proceeds down a line within the flow channel and reaction of the base A with the surface is restricted to that line.
  • the adenme solution may then be replaced with buffer so as to flush the adenme solution from the system and further reagents may pe sent down the same line to carry out any deprotection or protection reactions required by the general reaction scheme at this stage.
  • each line may be extremely small e.g. from 1 to 180 ⁇ m.
  • Similar parallel tracks of the bases cytosine (C) and thymme (T) may be laid down m similar fashion and the sequence may be repeated as often as desired, thus providing a first layer of bound nucleotides m a one dimensional array.
  • the process may be repeated as often as desired to produce a one dimensional oligonucleotide array m which each row contains a known oligonucleotide sequence.
  • a two dimensional array may be created.
  • a specific line of spots along the first track of base A laid down may be deprotected by a light activated photo-deprotection reaction.
  • the next base introduced along that same line will then react only at the deprotected spots.
  • a second base may then be reacted at a different set of spots deprotected along the same line through a different mask and so on such that along the first line laid down there are now numerous spots with each of the possible combinations AA, AT, AC, and AG.
  • This may then be repeated for each of the subsequent lines and over many layers to build a two dimensional array m which at each row/column intersection there is an oligonucleotide of a unique and known sequence.
  • FIG. 2 The apparatus shown m Figures 2 to 4 lends itself to the building up of a two-dimensional array of oligo- nucleotides or other polymers having a similar defined sequence of differing monomer subunits by a significantly different process m accordance with the second aspect of the invention .
  • the apparatus of Figure 2 resembles that shown Figure 1 except m the following manner.
  • a second flow channel 40 is defined like flow channel 12 by a trench in the substrate 10 having a floor 42 (Figs. 3 and 4) and side walls 44 (Fig. 3) .
  • the roof 18 is again provided and of course covers both flow channels.
  • the flow channel 40 defines a flow path which extends from the bottom to the top in the drawing and has at its upstream end three inlets for liquid.
  • the centre inlet 48 is for a flow of hydrodynamically focused liquid 60.
  • Each of the inlets 50 and 52 is for a respective flow of guidance liquid 62.
  • the end of the flow path is provided with an outlet for the liquids at 54.
  • Each of the inlets and the outlet has a respective flow control valve 66, 68, 70 and 72.
  • the flow channels 12 and 40 preferably, but not essentially, cross at right angles as shown and at their intersection, the floors of the flow channels share a region of the substrate 10 in common at 74 (Fig. 3) constituting a target surface.
  • the corners formed in the side walls of the flow channels at their intersection are radiused rather than hard.
  • all possible 8-mers of oligonucleotides may be formed by putting down in a first layer 64 rows of A, followed by 64 rows of T, then 64 rows of C and 64 rows of G. Next one lays down 64 columns of each of A,T,C and G. Then one lays down four repeating sequences of 16 rows of each of A,T,C, and G and then four repeating sequences of 16 columns of A,T,C and G. This is followed by sixteen repeating sequences of 4 rows of each base and then by sixteen repeating sequences of 4 columns of each base. Lastly one lays down 256 single rows and then 256 single columns of each base in order. Each layer of rows or columns covers the entire area with 256 rows or columns m each layer.
  • each row and column is made about 3 ⁇ m wide, one has patches of approximately 10 ⁇ m 2 arranged m an orthogonal 2- dimensional array, each containing a single unique 8-mer sequence at a known position within the array. Where a number of adjacent rows of tne same base are to be laid down, they need not be done individually.
  • the hydrofocussed flow may be made broader to cover the desired area in one pass by adjusting the amounts of guide buffer and hydrodynamically focussed flow liquid.
  • the apparatus may include a detector 80 for detecting and/or quantitatmg an interaction produced on the surface.
  • the 8-mer array just described may be exposed to a labelled oligonucleotide of unknown sequence and the point in the array where hybridisation occurs may be determined using a suitable detector.
  • the nature of the detector desired will vary widely according to the nature of the substances interacting on the surface and labelling methods used.
  • apparatus similar to that of Figure 1 may be driven by electro-osmotic force.
  • Each inlet 20, 22, 24 and the outlet 30 is provided with a respective electrode 520, 522, 524 and 530.
  • each electrode may be situated in contact with a reservoir from which che respective liquid is supplied or (in the case of the outlet 30) to which the liquid is directed.
  • the surface of the substrate bears an ionic charge as described above This attracts a ooundary layer of oppositely cnarged solvated ions in the liquid which are drawn by electrophoretic force toward the outlet electrode 530. Because the ions are solvated, this produces a flow of liquid.
  • the flow rate from each inlet may be adjusted by control of the potential difference between its respective electrode and the outlet electrode 530.
  • Typical operating voltages are from 1-10 kV. Due to the high resistance posed by the very small cross section of the flow channels, such high voltages may be used without producing excessive current and hence without excessive heat production.
  • the lateral position of the hydrodynamically focused flow is controlled by balancing the voltages applied to the guidance flow electrodes 522 and 524.
  • the apparatus shown m Figure 5 can nonetheless be operated according to the third aspect of the invention.
  • the surface of the substrate is not ionic, e.g. is coated with polyacrylamide, electro-osmotic flow will not occur and there will be no hydrodynamic focusing.
  • charged molecules such as proteins or nucleic acids will migrate by electrophoretic forces from the inlet 20 towards the outlet 30 and will follow a focused laterally restricted track between the inlets 22 and 24 following the electric field vectors defined by the electrodes.
  • tne guidance liquid on either side as shown in Figure 5.
  • a pair of driving electrodes 62, 64 are positioned at opposite ends of the target surface, m electrical content with the medium.
  • a migration path is thereby defined between tne electrodes 62, 64.
  • a row of separate electrodes 62 or of electrodes 64 may be provided on opposite lateral sides of the migration path between the electrodes 62, 64.
  • guidance electrodes 66, 68 On opposite lateral sides of the migration path between the electrodes 62, 64 are provided guidance electrodes 66, 68. Again, if desired a row of separate electrodes may be provided instead of the single elongate electrode shown.
  • Controlled electrical voltages are applied to the driving and guidance electrodes via a suitable controlled voltage source. As shown, the voltage applied to one of the driving electrodes is opposite sign to that applied to the other three electrodes. Negatively charged molecules introduced at the driving electrode 62 will migrate m the medium towards the electrode 64 and will be laterally spatially confined or focused by the guidance electrodes 66, 68. The migration can be directed closer or further from the electrode 66 by suitable adjustment of the voltages applied to the two guidance electrodes 66, 68.
  • the target surface defined between the electrodes may be similar size to the target surface in the apparatus of Figures 1 to 4.
  • Suitaole voltages to drive the electrodynamically focused migration between the driving electrodes may be in the range of 0.5 to 10 kV/cm, e.g.
  • electrodes 66 and 68 may be used as driving electrodes and electrodes 62 and 64 may be used as guidance electrodes, with suitable reconfiguration of the applied voltages, so as to migrate molecules from electrode 66 to electrode 68, i.e. crosswise of the initially described migration.
  • the surface may be coated uniformly with a first reactant, for instance an antibody, and a sample with a concentration of a binding partner for the antibody that varies over time may be progressively scanned over the surface using the apparatus of Figure 1 so that each row represents interaction between the flow and the surface over a defined time period. The concentration of the binding partner during each time period may then be determined by measuring the amount of binding each row.
  • columns of different antibodies may be provided using the apparatus of Figure 2 and the sample may then be scanned down the surface as previously described so that each row now gives a measurement of the amount of eac-i respective antibody pind g partner present the sample during each time period.
  • the array of locations definable according to the practice of the invention may be used m a microscopic version of a conventional microtitre plate.
  • virtual wells constituted by points m the array may be coated with an antibody or antigen (the whole surface of the substrate within the flow channel may be so coated) and the method described with respect to figure 1 may be used to expose respective rows of locations to a sample and to various concentrations of standard sequentially, followed by other conventional assay reagents with the resulting reaction product concentrations being read by the detector so that each row provides a number of 'repeats' corresponding to column locations within the row and the different rows provide calibration curve information as well as the result for the sample.
  • the methods of the invention may be used to address a sample to chosen areas of an array chip synthesised by other means, e.g. by spotting methods known in the art.
  • Sample materials that may be studied using apparatus and methods according to tne invention will include body fluids, nucleotide oased materials including DNA and RNA, proteins, peptides, polypeptides, cell culture products, waste water, drinking water and ground water.
  • nucleotide oased materials including DNA and RNA, proteins, peptides, polypeptides, cell culture products, waste water, drinking water and ground water.
  • cells are immobilised over the substrate surface and cells at different locations are treated with different reagents to see which produce a reaction m the cells, thus providing a mapping reflecting the phenotype of the cells.
  • the metnods and apparatus described will have wide application m combinatorial chemistry.
  • the apparatus of Figure 1 is modified m that instead of a single inlet 20 for the guided stream, there are multiple inlets 20a, b,... for separate guided streams, each controlled by a respective inlet pump (not shown) . Between each guided stream inlet 20a, 20b..., there is an inlet 23a, b... for a subsidiary guiding liquid stream.
  • the guided streams 26a, b... are separated by flows 28a, b... of the guiding liquid and the guided streams and the subsidiary guiding streams all flow parallel to one another over a region of the floor of the channel dictated by the flow rate through the ma guidance stream inlets 22, 24.
  • Each subsidiary guiding stream inlet may be provided with a respective controlling pump or they may be connect in common to a single pump.
  • the desired flow rates may be established through the inlets 22 and 24 only to produce an interface between the guidance streams 28 at the desired lateral (up/down in the drawing) position m the channel 12.
  • the flow through each of the inlets 20a, 20b... and eacn of the inlets 23a, 23b... may then be initiated, so that the streams of guided liquid flow at the previously established interface position, separated by the subsidiary guided streams.
  • the guided streams interact with a fresh area of the floor 14.
  • the floor 14 may be 'painted' by any desired number of separate liquids much more quickly than in the apparatus of Figure 1. For instance, there may be three guided streams, each containing reactants for depositing a respective nucleotide A, T or G and layers of nucleotides may be reacted with the surface and then with growing nucleotide chains to rapidly build up a desired one dimensional array.
  • the apparatus of Figure 1 is modified by the provision of a fourth inlet 23' for a guidance stream m front of (i.e. downstream from) an optional weir 25 so as to introduce a guidance stream 28' beneath the guided stream 26.
  • a flow control pump (not shown) is provided for the inlet 23' .
  • the guided stream 26 can be pushed upwards for greater interaction with the upper surface of the channel or may be allowed to collapse downwards for contact and interaction with the floor 14 of the cnannel .
  • the guiding flow 28' will provide additional dimensional flexibility m the flow 26, helping to prevent an agglomeration of particles clogging the flow path.
  • the fluid supply arrangements for use wit ⁇ tne apparatus of Figure 1 are shown m more detail m Figure 9. These could be duplicated for use in the apparatus of Figure 2.
  • a pump 35 for the guided flow stream is connected to feed through a sampling valve 92, which is a rotary valve that can be set to load a sample into a loop and to inject this into the guided flow steam with minimum interruption of the flow stream.
  • Pumps 31 and 33 are provided for the guiding streams.
  • a T junction 94 is provided immediately upstream of the mlet for the guided stream to the channel 12 so as to allow the guided stream flow to be diverted to waste rather than entering the channel 12.
  • a three port, two way valve 96 is provided connected between the T junction, the outlet 30 and a dram line 98. In use, the valve 98 in the position illustrated allows sample to flow through the T junction for guided flow. When it is desired to cease passage of the sample, the pump 35 may be stopped or reversed.
  • Switching valve 96 to connect the dram 98 to the T junction rather than to outlet 30 produces a situation m which the guiding flows are no longer able to exit via outlet 30 and therefore back flush through the T junction, there by clearing it of sample material . This prevents gradual leakage of sample material into the channel 12 during the period when the flow of sample is stopped.
  • the invention may be applied to depletion of unwanted DNA material from a sample stream containing biological cells and subsequent sorting of the cells into different containers in order to further analyse the DNA m the isolated cells.
  • a microchip structure may be formed as s desc ⁇ oed in Example 1 below, but formed with two outlets instead of a single outlet.
  • the chip is connected up as shown in Figure 9, except that the extra outlet is connected to a piezo- element based valve 104.
  • This valve keeps the outlet 100 closed, but has the capability to open when activated by a pulse.
  • the piezo-element nature of the valve enables the valve to open and close very quickly practice up to 1000 times per second.
  • the surface of the silicon chip may be altered by silanization using 3 -ammopropyl- t ⁇ ethoxy-silane (4% (v/v) in dry acetone) , thereby introducing positively charged am o groups on the entire chip surface.
  • the cells to be isolated from the other cells are labelled with a specific probe (e.g. an antibody) which is conjugated to a fluorochrome e.g. fluorescem.
  • a specific probe e.g. an antibody
  • a fluorochrome e.g. fluorescem
  • the cell preparation including the fluorescem labelled cells are introduced into the sample stream and directed over the positively charged surface of the chip.
  • the sample stream is narrowed down to around 5-25 ⁇ m, thereby allowing the biological cells to line up one after another m the sample stream.
  • the sample stream As the sample stream is passing over the positively charged chip surface, molecules m the sample stream will, due to diffusion, interact with the surface. Due to their relatively large size, whole cells will not interact with the chip surface to any particular degree (the degree of interaction can be controlled by adjusting the flow rate of the sample stream; a slow flow rate will give more interaction as the cell stays longer m the chip) .
  • the positively charged ammo groups on the chip surface will "extract" negatively charged molecules such as DNA fragments from disrupted cells or other sources. Such depletion is very important in case a further analysis of the DNA in the isolated cells has to be performed. Generally m flow cytometry and cell sorting a variety of sample pre- preparation steps are needed before the cell sample can be introduced into the system.
  • sample impurities such as free nucleic acids (DNA, RNA) are problematic.
  • the cell sample has to be washed before and/or after sorting by e.g. centrifugation steps, or DNA/RNA has to be removed by enzymatic treatment.
  • the chip is used in combination with a fluidic cell sorter giving an on-chip cell sorting system having an integrated sample purification and washing step.
  • the sample stream is guided over the entire chip surface by adjusting the speed of the guiding pumps.
  • the chamber is used to capture undesired sample contents to the patterned surface within flow channel. Non-desired molecules such as DNA can be separated and withdrawn from the sample before sorting by binding them to the surface of the flow channel .
  • micro channel More generally by coating the micro channel with chemicals or electrodes specific chemical and mechanical properties can be achieved. For instance, py coating of the micro channel with a cationic or anionic molecule a defined surface charge can be created, attracting certain molecules within the sample to bind or absorb to the surface. Eletrophoretic forces created by an electrode (positioned within the flow channel) may be used to attract and attach corresponding molecules from the sample flow stream to the surface of the micro channel.
  • the flow channel has electrodes positioned at the bottom of the flow channel.
  • a voltage can be applied to the electrode giving a negative or positive bias.
  • Various molecules, probes, receptors, indicators, etc. may be attracted to the attached at the surface of the electrode by applying a voltage to the electrode while a fluid with the corresponding probes, receptors, indicators, etc. flows m the flow channel.
  • DNA which has an overall negative charge is drawn to the electrode surface by a positive bias.
  • electrodes coated with a specific layer or matrix e.g. a polymer such as urethane or a reactive chemical group, can be used.
  • a specific layer or matrix e.g. a polymer such as urethane or a reactive chemical group
  • the cell or particle suspension is pumped, by e.g. syringe infusion pump, through the flow channel.
  • the sample is observed and detected by a microscope 108 equipped with controlling means for controlling the two-way valve 104.
  • controlling means may comprise an optical detector, e.g. photomultiplier system (PMT) .
  • PMT photomultiplier system
  • the objective is focused on the measuring point which is located inside the flow channel.
  • the dimension of the measuring point is defined by a pmhole positioned m front of tne PMT and tne magnification.
  • the micro flow system is placed on a x-y- translational stage allowing one to move tne micro flow system and to define an appropriate area as a measuring point.
  • several light sources can be used, e.g.
  • the laser shown or a tungsten lamp, or a photo diode.
  • a photomultiplier CCD camera/chip or photo diode can for instance be used.
  • a photo lens an objective or a light microscope can be used.
  • Various optical detection methods e.g. fluorescence, absorbance, can be used.
  • Particles are physically separated (using hydrodynamic forces) according to the result of multiple simultaneous optical measurements on each particle.
  • the photomultiplier (PMT) signals for each particle are transported to a pulse- height analyser also comprised within the controlling means.
  • a selection circuit provides an activating signal whenever a specific particle exhibits photometric properties within a predetermined range. If the PMT signal for a specific particle exceeds a specific value an actuation pulse is produced. The trigger level and the duration for actuation is selected by the operator.
  • the sorting apparatus is designed to achieve a minimal dilution of the separated sample fraction. Hydrodynamic separation of particles can be performed due to the optical, electrical and other properties of the particle containing sample .
  • the particles suspended in a fluid medium are pumped through a separation flow chip and the cells are observed at the optical axis of the photo detector, e.g. by a spectro- photometer or microscope, and flow to the separation junction. Unselected particles continue- to flow out into the waste outlet 102. If a specific cell has optical properties causing an actuation signal, the valve opens causing the liquids to flow to the sort outlet 100 leading to capture inside the collecting channel attached to it. The actuation time or pulse by which the sort valve is switched on is made longer than necessary to ensure that the desired cell has been transported into the sorting channel.
  • the blocking valve 104 e.g. a piezoelectric drop-on- demand mk-jet printing valve, is attached to the sort outlet channel, allowing the blocking or opening of the stream passing through the sort outlet 100.
  • the flow restriction in the waste outlet channel is much higher than the flow restriction of the sort outlet channel . This can be achieved by attaching a flow rest ⁇ ctor to the waste outlet channel 102. Thus if the sort outlet channel is not blocked the particle stream is deflected to the sort outlet channel. For analysis operation the sorting channel is continuously blocked by the sort valve 104. Thus, in this mode all the particles passing through the detection area which is defined by the slit in front of the photomultiplier are drained into the waste container. The trigger level and the duration for actuation is selected by the operator.
  • each cell is addressed with laser light from laser 106 and the emitted light at 519 nm is captured m the microscope/photo- multiplier 108. If no fluorescem molecules are present on the cells, the cells will flow out through outlet 102. If a fluorescem molecule is detected, a pulse goes to the piezo- valve 104 causing it to open thereby directing the labelled cell out of the outlet 100.
  • the cell can be collected and the DNA of the cell can ce further analysed.
  • a syringe pump can be attached to the sort outlet channel allowing one to aspirate a defined volume from the stream into the sort outlet. As soon as a sorting event occurs the microsyrmge pump is actuated for a short period of time (aspirating mode) and aspirates a defined volume of sample.
  • the sample e.g. particles in suspension
  • the particle stream is illuminated with the light of a mercury arc lamp passing excitation filters for e.g. fluorescem measurement.
  • a dichroic mirror reflects the excitation light to the sorting chip via a e.g. 20x microscopy objective.
  • the fluorescence light emission is collected by the same objective passing a dichroic mirror. Behind the mirror a slit works as field stop limiting the detection area to a small stripe. Each particle passing the detection field generates a short photomultiplier signal.
  • the measuring signal is amplified and passed to a peak detector.
  • the system is designed so that tne flow restriction m the waste outlet channel s bigger than n tne sort outlet. Thus all liquids pumped through the separation flow cnannel are forced into the sort outlet.
  • the sort outlet is connected to a two-way valve allowing one to control the direction of the sample flow. If a cell needs to be separated the valve is opened for a short period of time.
  • the sample enters the separation flow channel via the central mlet and is guided by two guiding buffers to the interrogation point and sorter junction.
  • the sort outlet is normally blocked by the closed sort valve. Thus all flow stream is guided to the waste outlet . Unselected particles/cells continue to flow out into the waste outlet container.
  • the sort valve opens for a short interval of time, causing the fluid to flow out through the sort channel into the collecting chamber.
  • the delay time between detection and actuation of the sort valve is adjustable. The actuation time is adjusted long enough to ensure that a desired cell is guided to the sort outlet.
  • the liquid volume guided to the sort outlet is defined by the time interval the valve is open and by the total flow rate.
  • the actuation speed of the valve used m this device is 1500 MHz which corresponds to a minimal actuation time of 0.6 msec.
  • One further variation includes the use of several, e.g. 4 different fluorochromes (as known from so-called 4 colour sequencing of DNA molecules) for cell labelling and the sorting of cells into respective, e.g. 5 different outlets.
  • Other variations include derivatization of the chip surface to contain a molecular specific binding partner such as an antibody, a receptor or a DNA sequence. In such a variation, specific unwanted molecules can be depleted from the sample stream.
  • the piezo valve at outlet 100 is substituted by an electrode positioned inside the flow channel close to the sorting outlet 100. Cells are separated by a transient electrical field which is switched on and pulsed for a short interval of time as soon as cell is needed to be sorted.
  • the electrode creates a high frequency electrical field (e.g. 6 MHz) .
  • Living cells positioned in such a high frequency electrical field will be polarised and can be drawn towards the electrode by using an alternating field.
  • the bottom of the chamber is covered with an electrode. Molecules in the sample will be attracted (according to their net charge) to the surface of the channel by the electrode creating an electrical field.
  • the electrode can be positioned at one side of the channel. For instance, positively charged sample molecules may be drawn out of the focused sample flow stream by an electrical field and will be attached to the surface of the electrode. After analysis the surface can be purified by switching the voltage into a positive bias.
  • Example 1 Visualisation of fluorescem- labeleo-biotm bound lane-wise on microchip surface v a streptav d
  • a silica microchip having etched thereon a flow channel navmg three mlets and a single outlet, generally as shown in Figure 1 is coated with streptavidm.
  • the chip is connected up as shown in Figure 9.
  • the microchip provides a reaction chamber (1420 ⁇ m wide, 40 ⁇ m high and 5700 ⁇ m long) etched m the silicon and closed by bonding a cover lid of pyrex glass. Capillary connections from the syringe pumps to the reaction chamber was via 180 ⁇ m wide mlets.
  • the microchip structure was formed as described m Example 1, but with inlet/outlets at three of the four corners of the pincushion square chamber with concave sides and an outlet at the remaining corner.
  • the procedure was performed as described in Example 1.
  • the X dimension using the sample- and guiding mlets X another set of fluorescent lanes was immobilised in the Y dimension using the sample- and guiding mlets Y.
  • the dimension of the reaction chamber was 2500 X 2500 ⁇ m (closest distance between opposite borders) .
  • the width of obtained immobilised lanes was around 50 ⁇ m near the centre of the chamber.
  • the resulting pattern of fluorescem staining is seen in Figure 11.
  • Example 3 Interaction of a cell to a surface which is patterned with an array of reagents created by the method of the invention
  • a further use of the method and apparatus of the invention relates to the screening of anti- inflammatory drug candidates by cell rolling.
  • Cell rolling is the initial step the inflammatory response.
  • Adhesion molecules such as E- , P-, and L-Selectms which are secreted by endothelial cells and leukocytes upon activation are recognised by different membrane based receptors of leukocytes initiating cell rolling.
  • Cell rolling is caused by cycle of temporary adhesion and release of cells on a surface.
  • Adhesion inhibitors acting as anti- flammatory drugs
  • Antl- inflammatory drugs are interesting for treatment of arthritis, and different autoimmune diseases.
  • cell rolling is the interaction of a cell with a surface m a capillary system under continuous flow conditions.
  • the flow velocity of an individual cell - which is dependent on the total flow rate, the viscosity, the diameter and roughness of the capillary - can be changed by the interaction of the cell with the specified surface.
  • a temporary adhesion of a specific cell to the surface reduces the flow velocity of that specific cell within the flow system.
  • the cell travels at a slower speed through the channel .
  • Figure 13 shows a schematic diagram of cell adhesion and inhibition in a selectin coated microflow chip of the type shown in Figure 1.
  • the general procedure is as follows.
  • the channel floor surface is patterned with different stripes of reagents as follows : -
  • a cell suspension is guided through tne chamber for a defined period of time.
  • the sample flow stream is hydrodynamically focused on stripe 1 to 4 in turn. Cells and the Selectm interact and adhesion is observed within distinctive area of the chip.
  • the sample flow stream containing the cell suspension is substituted by a washing buffer.
  • This washing buffer removes the remaining unbound cells out of the chamber. Cells interacting with the surface remain within the chamber as shown the figure (cells bound to lane 3) and are flushed out with time.
  • a cell suspension containing the drug/ reagent is guided through the chamber but hydrodynamically focused on stripes 5 to 8 m turn. No interaction of the cells with the selectm coated surface s observed m the presence of an effective drug.
  • the chamber is then washed as previously described.
  • the flow chamber is coated with stripes of E-, P-, and L-Selectm, and a negative control using the hydrodynamic focusing procedure as described before.
  • Isolated neutrophils or lymphocytes are introduced into the chamber.
  • the flow rate is chosen to get a shear rate which mimics blood flow m a vascular capillary (800 mm "1 ) . While the cell sample is drawn at a continuous flow rate through the chamber the cells interact with the patterned surface .
  • a mixture of the cell sample and the sample buffer containing the drug candidate are mixed and introduced into the chamber and guided via a second pattern, of E-, P-, and L-Selectm, and a negative control using the hydrodynamic focusing.
  • the rolling effect can be measured by an imaging system (e.g. light microscopic equipped with a CCD camera) which detect the travelling time of an individual cell or counts the total amount of cells within a defined area (after removing the cell sample by a washing buffer) within the flow channel.
  • an imaging system e.g. light microscopic equipped with a CCD camera
  • a response of a cell to a specific receptor can be determined.

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Abstract

Cette invention concerne une composition d'un liquide (26) que l'on met en interaction avec une zone en forme de bande étroite en un endroit prédéterminé d'une surface solide se trouvant dans un canal d'écoulement (12), ceci en effectuant une mise au point hydrodynamique d'un flux guidé de ce liquide entre deux flux d'un liquide de guidage (28). En modifiant le rapport des débits des deux flux de liquide de guidage, la position du flux de liquide guidé s'en trouve modifiée et l'interaction suivante avec la surface solide se produit le long d'une seconde zone en forme de bande. En utilisant deux canaux d'écoulement de ce type, il est possible de produire un réseau bidimensionnel de sites d'interaction.
PCT/EP2000/002578 1999-03-24 2000-03-23 Interaction orientee dans l'espace sur surface solide WO2000056444A2 (fr)

Priority Applications (3)

Application Number Priority Date Filing Date Title
JP2000606339A JP2002539918A (ja) 1999-03-24 2000-03-23 固体表面上の空間的に向けられた相互作用
AU34314/00A AU3431400A (en) 1999-03-24 2000-03-23 Spatially directed interaction on a solid surface
EP00912637A EP1169122A2 (fr) 1999-03-24 2000-03-23 Interaction orientee dans l'espace sur surface solide

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
GBGB9906827.2A GB9906827D0 (en) 1999-03-24 1999-03-24 Spatially directed interaction on a solid surface
GBGB9921950.3A GB9921950D0 (en) 1999-09-16 1999-09-16 Spatially directed interaction on a solid surface
GB9921950.3 1999-09-16
GB9906827.2 1999-09-16

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WO2002003051A1 (fr) * 2000-06-30 2002-01-10 Celtor Biosystems A/S Assemblage de cuves a circulation et procedes destines a l'interaction spatialement orientee entre liquides et surfaces solides
WO2003000404A1 (fr) * 2001-06-22 2003-01-03 Domantis Limited Procede de depistage par une matrice
EP1319950A1 (fr) * 2001-12-03 2003-06-18 Domantis Limited Procédé de dépistage par une matrice
WO2003054553A1 (fr) * 2001-12-11 2003-07-03 Thomas Laurell Distributeur a reseau generique avec canaux d'ecoulement virtuels laminaire
WO2003072765A1 (fr) * 2002-02-27 2003-09-04 The Regents Of The University Of Michigan Procede de tri permettant de separer des particules motiles de particules moins motiles, et appareil utilise a cet effet
WO2005016531A1 (fr) * 2003-06-26 2005-02-24 Intel Corporation Fabrication de structures dans des canaux microfluidiques basee sur la concentration hydrodynamique
EP1521077A1 (fr) * 2003-10-02 2005-04-06 Sony Corporation Détection des interactions entre des substances
WO2005057186A1 (fr) * 2003-12-10 2005-06-23 Biacore Ab Procede de positionnement de flux d'echantillonnage et systeme analytique l'utilisant
US7219528B2 (en) 2003-12-10 2007-05-22 Biacore Ab Sample flow positioning method and analytical system using the method
KR100850643B1 (ko) 2007-02-07 2008-08-07 (주)지노첵 바이오칩 및 이를 이용한 정자 분류 방법
WO2008133698A1 (fr) * 2007-04-25 2008-11-06 Whalen Christopher D Procédé et appareil d'isolement hydrodynamique
US8361716B2 (en) 2008-10-03 2013-01-29 Pathogenetix, Inc. Focusing chamber
US8518705B2 (en) 1999-08-13 2013-08-27 Pathogenetix, Inc. Methods and apparatuses for stretching polymers
US8685708B2 (en) 2012-04-18 2014-04-01 Pathogenetix, Inc. Device for preparing a sample
US20140329722A1 (en) * 2008-01-24 2014-11-06 Sandia Corporation Methods and devices for immobilization of single particles in a virtual channel in a hydrodynamic trap
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US9028776B2 (en) 2012-04-18 2015-05-12 Toxic Report Llc Device for stretching a polymer in a fluid sample
US9040304B2 (en) 2003-03-28 2015-05-26 Inguran, Llc Multi-channel system and methods for sorting particles
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US9879221B2 (en) 2000-11-29 2018-01-30 Xy, Llc Method of in-vitro fertilization with spermatozoa separated into X-chromosome and Y-chromosome bearing populations
CN112299995A (zh) * 2020-11-08 2021-02-02 复旦大学 使用微反应***连续制备(r)-4-卤-3-羟基-丁酸酯的方法
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US8518705B2 (en) 1999-08-13 2013-08-27 Pathogenetix, Inc. Methods and apparatuses for stretching polymers
WO2002003051A1 (fr) * 2000-06-30 2002-01-10 Celtor Biosystems A/S Assemblage de cuves a circulation et procedes destines a l'interaction spatialement orientee entre liquides et surfaces solides
US9879221B2 (en) 2000-11-29 2018-01-30 Xy, Llc Method of in-vitro fertilization with spermatozoa separated into X-chromosome and Y-chromosome bearing populations
WO2003000404A1 (fr) * 2001-06-22 2003-01-03 Domantis Limited Procede de depistage par une matrice
EP1319950A1 (fr) * 2001-12-03 2003-06-18 Domantis Limited Procédé de dépistage par une matrice
WO2003054553A1 (fr) * 2001-12-11 2003-07-03 Thomas Laurell Distributeur a reseau generique avec canaux d'ecoulement virtuels laminaire
US9523075B2 (en) 2002-02-27 2016-12-20 The Regents Of The University Of Michigan Process for sorting motile particles from lesser-motile particles and apparatus suitable therfor
US10227562B2 (en) 2002-02-27 2019-03-12 The Regents Of The University Of Michigan Process for sorting motile particles from lesser-motile particles and apparatus suitable therefor
WO2003072765A1 (fr) * 2002-02-27 2003-09-04 The Regents Of The University Of Michigan Procede de tri permettant de separer des particules motiles de particules moins motiles, et appareil utilise a cet effet
US9174214B2 (en) 2002-05-31 2015-11-03 Ge Healthcare Bio-Sciences Ab Method of coupling binding agents to a substrate surface
US11261424B2 (en) 2002-09-13 2022-03-01 Xy, Llc Sperm cell processing systems
US11230695B2 (en) 2002-09-13 2022-01-25 Xy, Llc Sperm cell processing and preservation systems
US9040304B2 (en) 2003-03-28 2015-05-26 Inguran, Llc Multi-channel system and methods for sorting particles
US11718826B2 (en) 2003-03-28 2023-08-08 Inguran, Llc System and method for sorting particles
US11104880B2 (en) 2003-03-28 2021-08-31 Inguran, Llc Photo-damage system for sorting particles
US10100278B2 (en) 2003-03-28 2018-10-16 Inguran, Llc Multi-channel system and methods for sorting particles
US7850907B2 (en) 2003-06-26 2010-12-14 Intel Corporation Fabricating structures in micro-fluidic channels based on hydrodynamic focusing
US7381361B2 (en) 2003-06-26 2008-06-03 Intel Corporation Fabricating structures in micro-fluidic channels based on hydrodynamic focusing
WO2005016531A1 (fr) * 2003-06-26 2005-02-24 Intel Corporation Fabrication de structures dans des canaux microfluidiques basee sur la concentration hydrodynamique
EP1521077A1 (fr) * 2003-10-02 2005-04-06 Sony Corporation Détection des interactions entre des substances
WO2005057186A1 (fr) * 2003-12-10 2005-06-23 Biacore Ab Procede de positionnement de flux d'echantillonnage et systeme analytique l'utilisant
US7219528B2 (en) 2003-12-10 2007-05-22 Biacore Ab Sample flow positioning method and analytical system using the method
AU2004297498B2 (en) * 2003-12-10 2009-10-01 Ge Healthcare Bio-Sciences Ab Sample flow positioning method and analytical system using the method
US8999636B2 (en) 2007-01-08 2015-04-07 Toxic Report Llc Reaction chamber
KR100850643B1 (ko) 2007-02-07 2008-08-07 (주)지노첵 바이오칩 및 이를 이용한 정자 분류 방법
US7858372B2 (en) 2007-04-25 2010-12-28 Sierra Sensors Gmbh Flow cell facilitating precise delivery of reagent to a detection surface using evacuation ports and guided laminar flows, and methods of use
WO2008133698A1 (fr) * 2007-04-25 2008-11-06 Whalen Christopher D Procédé et appareil d'isolement hydrodynamique
US9110010B2 (en) * 2007-05-11 2015-08-18 The United States Of America, As Represented By The Secretary Of The Navy Electrical detection using confined fluids
US20140329722A1 (en) * 2008-01-24 2014-11-06 Sandia Corporation Methods and devices for immobilization of single particles in a virtual channel in a hydrodynamic trap
US8361716B2 (en) 2008-10-03 2013-01-29 Pathogenetix, Inc. Focusing chamber
US8685708B2 (en) 2012-04-18 2014-04-01 Pathogenetix, Inc. Device for preparing a sample
US9028776B2 (en) 2012-04-18 2015-05-12 Toxic Report Llc Device for stretching a polymer in a fluid sample
CN112299995A (zh) * 2020-11-08 2021-02-02 复旦大学 使用微反应***连续制备(r)-4-卤-3-羟基-丁酸酯的方法
CN112299995B (zh) * 2020-11-08 2022-03-18 复旦大学 使用微反应***连续制备(r)-4-卤-3-羟基-丁酸酯的方法

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