WO1998045438A1 - Ucp3: an uncoupling protein homologue - Google Patents

Ucp3: an uncoupling protein homologue Download PDF

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Publication number
WO1998045438A1
WO1998045438A1 PCT/US1998/006959 US9806959W WO9845438A1 WO 1998045438 A1 WO1998045438 A1 WO 1998045438A1 US 9806959 W US9806959 W US 9806959W WO 9845438 A1 WO9845438 A1 WO 9845438A1
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gly
leu
ala
pro
ucp3
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PCT/US1998/006959
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French (fr)
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Bradford B. Lowell
Jeffrey S. Flier
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Beth Israel Deaconess Medical Center
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Priority to AU74661/98A priority Critical patent/AU7466198A/en
Publication of WO1998045438A1 publication Critical patent/WO1998045438A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Definitions

  • UCP1 the first uncoupling protein to be identified (Lin, C.S., et al . , FEES Lett . , 113:299-303 (1980); Jacobsson, A., et al . , J. Biol . Chem . , 260 : 16250 - 16254 (1985); Bouillaud, F., et al., J. Biol . Chem . , 261 : 1487-1490 (1986)), is expressed exclusively in brown adipose tissue, an important site of energy expenditure in rodents (Himms-Hagen, J., Prog. Lipid Res . , 28:67-115 (1989) ) .
  • UCP1 may be of lesser importahce in humans, in whom the amount of brown adipose tissue is limited.
  • a second uncoupling protein referred to UCP2 , was recently identified (Fleury, C., et al . , Nature Genetics, 15:269-272 (1997)) or UCPH (Gimeno, R.E., et al . , Diabetes, 46:900-906 (1997)).
  • UCP2 is expressed in many tissues, including sites not thought to mediate energy expenditure which occurs in response to environmental temperature or diet (adaptive thermogenesis) .
  • the present invention relates to an uncoupling protein (UCP3) gene which is selectively expressed in skeletal muscle and brown fat, two tissues involved in energy expenditure in mammals.
  • UCP3 uncoupling protein
  • the invention relates to an alternative form of UCP3 designated UCP3-sl ⁇ .ort form
  • UCP3sh which is also expressed in skeletal muscle. Skeletal muscle particularly has a capacity for energy expenditure, or adaptive thermogenesis, in humans.
  • UCP3 refers to UCP3 and UCP3sh.
  • the present invention relates to isolated (e.g., purified, essentially pure) nucleic acids (oligonucleotides, nucleotide sequences) which encode a mammalian (e.g., human) UCP3 protein, and include for example, nucleic acids (DNA, RNA) obtained from natural sources, recombinantly produced or chemically synthesized.
  • the nucleic acids of the present invention include nucleic acids encoding human UCP3 (SEQ ID NO : 1) , human UCP3sh (SEQ ID NO: 2) , mouse UCP3 (SEQ ID NO: 7) and characteristic portions thereof (e.g., probes, primers).
  • the invention also includes complementary sequences (i.e., a complement) of SEQ ID NO: 1, SEQ ID NO : 2, SEQ ID NO : 7 and . characteristic portions thereof.
  • the nucleic acids of the present invention encompass nucleic acids encoding a human UCP3 amino acid sequence (SEQ ID NO: 3) , a human UCP3sh form amino acid sequence (SEQ ID NO: 4) , a mouse UCP3 amino acid sequence (SEQ ID NO: 8) and characteristic portions thereof .
  • the present invention further relates to isolated, recombinantly produced or synthetic nucleic acids which hybridize to the nucleic acids described herein (e.g., SEQ ID NO: 1, SEQ ID NO : 2, SEQ ID NO : 7 or characteristic portions thereof) and encode UCP3 protein (a protein having the same amino acid sequence as the amino acid sequences included herein and/or a protein which exhibits the same characteristics as the UCP3 protein described herein) .
  • the invention relates to nucleic acids which hybridize, under moderate or high stringency, conditions, to SEQ ID NO: 1, SEQ ID NO : 2, SEQ ID NO : 7, characteristic portions thereof or other sequences which encode, UCP3.
  • nucleic acid construct comprising nucleic acid which encodes a UCP3 protein (e.g., SEQ ID NO : 1, SEQ ID NO: 2, SEQ ID NO : 7 and characteristic portions thereof) , wherein the nucleic acid of the construct is expressed when the construct is present in an appropriate host cell.
  • the nucleic acid construct of the present invention is operably linked to exogenous regulatory sequence (s) such as a promoter and/or enhancer, whereby mammalian UCP3 is expressed when the host cell is maintained under conditions suitable for expression.
  • the present invention also relates to a host cell comprising nucleic acid encoding mammalian UCP3 protein.
  • Also encompassed by the present invention is a method for producing a mammalian UCP3 protein (human) .
  • a nucleic acid construct comprising a nucleotide sequence (DNA, RNA) which encodes a mammalian UCP3 protein is introduced into a host cell, resulting in production of a recombinant host cell which contains a UCP3 coding sequence operably linked to an (i.e., at least one) expression control sequence.
  • the host cells produced are maintained in a suitable medium under conditions appropriate for the nucleotide sequence to be expressed, whereby the encoded UCP3 is produced.
  • the present invention also relates to isolated (e.g., purified, essentially pure) UCP3 protein and includes, for example, UCP3 protein obtained from natural sources, recombinantly produced or chemically synthesized.
  • the UCP3 protein can be human UCP3 protein (SEQ ID NO: 3), human UCP3sh (SEQ ID N0:4), mouse UCP3 protein (SEQ ID NO: 8) or functional portions thereof.
  • the present invention also pertains to a method of identifying agents which modulate or alter (e.g., inhibit or enhance) UCP3 activity.
  • An inhibitor of UCP3 interferes (partially or completely) with the function or bioactivity of UCP3 , directly or indirectly.
  • An enhancer (activator) of UCP3 increases or enhances the function or bioactivity of UCP3 , directly or indirectly.
  • the present invention relates to a method of identifying an agent which alters UCP3 activity, wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell(s) .
  • the host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed.
  • the host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential of the cells is detected in the presence of the compound to be assessed. Detection of a change in mitochondrial electrical potential in the presence of the agent indicates that the agent alters UCP3 activity.
  • the invention relates to a method of identifying an agent which is an activator of UCP3 activity wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell (s) .
  • the host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed.
  • the host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential of the cells is detected in the presence of the compound to be assessed. Detection of a decrease or reduction of mitochondrial electrical potential in the presence of the agent indicates that the agent activates UCP3 activity.
  • the invention relates to a method of identifying an agent which is an inhibitor of UCP3 activity, wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell (s) .
  • the host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed.
  • the host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential of the cells is detected in the presence of the compound to be assessed. Detection of an increase of mitochondrial electrical potential in the presence of the agent indicates that the agent inhibits UCP3 activity.
  • Methods of identifying agents which alter UCP3 activity can also be performed, as described herein, using a mixture of a membrane fraction, mitochondria and UCP3 (Jezek, et al . , J " . Biol . Chem . 271:6199-6205 (1996)).
  • an agent which interacts with UCP3 directly or indirectly, and inhibits or enhances UCP3 function is an agent which interacts with UCP3 directly or indirectly, and inhibits or enhances UCP3 function.
  • the agent is an inhibitor which interferes with UCP3 directly (e.g., by binding UCP3) or indirectly (e.g., by blocking the ability of UCP3 to regulate thermogenesis in skeletal muscle and/or brown adipose tissue) .
  • an inhibitor of the UCP3 protein is an antibody specific for UCP3 protein or a portion of a UCP3 protein; that is, the antibody binds the UCP3 protein.
  • the antibody can be specific for the human UCP3 protein (SEQ ID NO: 3, SEQ ID NO : 4), the mouse UCP3 protein (SEQ ID NO: 8) or functional portions thereof.
  • the inhibitor can be an agent other than an antibody (e.g., small organic molecule, protein, peptide) which binds UCP3 and blocks its activity.
  • the inhibitor can be an agent which mimics UCP3 structurally but lacks its function.
  • the inhibitor of UCP3 can be an agent which binds to or interacts with a molecule which UCP3 normally binds with or interacts with, thus blocking UCP3 from doing so and preventing it from exerting the effects it would normally exert.
  • the agent is an enhancer of UCP3 which increases the activity of UCP3 (increases thermogenesis in skeletal muscle and/or brown adipose tissue) , increases the length of time it is effective (by preventing its degradation or otherwise prolonging the time during which it is active) or both, either directly or indirectly.
  • the present invention also relates to antibodies (monoclonal or polyclonal) or functional portions thereof (e.g., an antigen binding portion such as an Fv, Fab, Fab', or F(ab') 2 fragment) which bind mammalian UCP3.
  • antibodies monoclonal or polyclonal
  • functional portions thereof e.g., an antigen binding portion such as an Fv, Fab, Fab', or F(ab') 2 fragment
  • the present invention also relates to a method of detecting mammalian UCP3 in a sample (e.g., skeletal muscle, brown adipose tissue) obtained from an individual, such as a human.
  • a sample e.g., skeletal muscle, brown adipose tissue
  • the sample is treated to render nucleic acids in the sample available for hybridization to a nucleic acid probe (e.g., SEQ ID NO: 1, SEQ ID NO : 2, SEQ ID NO : 7 and/or characteristic portions thereof which bind to characteristic regions of UCP3 -encoding nucleic acids).
  • the treated sample is combined with a nucleic acid probe (labeled or unlabeled) comprising or complementary to all or a characteristic portion of the nucleotide sequence encoding UCP3 protein, under conditions appropriate for hybridization of complementary nucleic acids to occur. Hybridization of nucleic acids in the treated sample with the nucleic acid probe is detected; the occurrence of hybridization indicates the presence of UCP3 protein in the sample.
  • the sample is contacted with an antibody which binds to UCP3 protein (e.g., SEQ ID NO: 3, SEQ ID NO : 4, SEQ ID NO : 8 or functional portions thereof) under conditions suitable for binding of the antibody to the mammalian UCP3. Binding of the antibody to a component of the sample is detected; binding of the antibody to a component of the sample indicates the presence of UCP3 protein in the sample.
  • Isolation of UCP3 also makes it possible to identify a promoter (s) and/or enhancer (s) of the UCP3 gene. Identification of promoters and/or enhancers of the UCP3 gene allow for identification of regulators of UCP3 transcription .
  • the present invention relates to transgenic non human animals (e.g., mice) which lack the UCP3 gene or contain a nonfunctional UCP3 gene such that UCP3 activity is lacking (e.g., UCP3 knockout mouse).
  • the invention also relates to methods of producing UCP3 gene knockout animals, such as mice.
  • UCP3 knockout mice can be used to further study the UCP3 gene and to assay for inhibitors and enhancers of UCP3.
  • the present invention also relates to a method of inhibiting (partially, completely) protein catabolism in a mammal (e.g., human) comprising administering to the mammal an effective amount of an inhibitor of UCP3.
  • the invention also relates to a method of enhancing protein catabolism in a mammal comprising administering to the mammal an effective amount of an enhancer of UCP3.
  • Also encompassed by the present invention is a method of inhibiting muscle wasting in a mammal comprising administering an effective amount of an inhibitor of UCP3 to the mammal .
  • UCP3 gene provides for selective modulation (enhancement, inhibition) of the expression and/or function of the UCP3 gene in skeletal muscle and brown fat, two tissues involved in adaptive thermogenesis.
  • Figures 1A-1C are the nucleotide sequence of human UCP3 (SEQ ID NO: 1) and three different amino acid sequences (SEQ ID NO : 27, SEQ ID NO: 28 and SEQ ID NO : 29) translated from SEQ ID NO: 1.
  • Figures 2A-2B are the nucleotide sequence of the UCP3- short form (UCP3sh) gene (SEQ ID NO : 2) and three different amino acid sequences (SEQ ID NO: 30, SEQ ID NO: 31 and SEQ ID NO: 32) translated from SEQ ID NO: 2.
  • Figure 3 is a comparison of the human UCP3 amino acid sequence (SEQ ID NO: 3) , the human UCP3sh amino acid sequence (SEQ ID NO: 4) , the human UCP1 amino acid sequence (SEQ ID NO: 5) and the human UCP2 amino acid sequence (SEQ ID NO: 6) ; sequence alignments were performed using the
  • Figure 4 is a graph of the hydrophilicity plots of human UCP2 and human UCP3 showing the hydrophobicity of protein across linear sequence; hydrophilicity plots for hUCP2 and hUCP3 were generated using the methods .of Kyte and Doolittle (Kyte, J. and Doolittle, R.F., J. Mol . Biol . 157:105-132 (1982) ) .
  • Figures 5A-5C are the nucleotide sequence of mouse UCP3 (SEQ ID NO: 7) and three different amino acid sequences (SEQ ID NO: 33, SEQ ID NO: 34, SEQ ID NO: 35) translated from SEQ ID NO: 7.
  • Figure 6 is the amino acid sequence of mouse UCP3 (SEQ ID NO: 7)
  • Figure 7 is a comparison of the mouse UCP3 amino acid sequence (SEQ ID NO: 8) with the mouse UCP1 amino acid sequence (SEQ ID NO: 9) , the mouse UCP2 amino acid sequence (SEQ ID NO: 10) and the human UCP3 amino acid sequence (SEQ ID NO: 3) ; the attached sequence and amino acid alignments, mUCP3 is 46% identical to mUCPl, 62% identical to mUCP2 but is 82% identical to hUCP3.
  • Figure 8 is a graphic representation of the genomic organization of the human UCP3 gene, and shows the splice donor sequence (SEQ ID NO: 11) and splice acceptor sequence (SEQ ID NO: 12) between exons 1 and 2, the splice donor sequence (SEQ ID NO: 13) and splice acceptor sequence (SEQ ID NO: 14) between exons 2 and 3, the splice donor sequence (SEQ ID NO: 15) and splice acceptor sequence (SEQ ID NO: 16) between exons 3 and 4, the splice donor sequence (SEQ ID NO: 17) and splice acceptor sequence (SEQ ID NO: 18) between exons 4 and 5, the splice donor sequence (SEQ ID NO: 19) and splice acceptor sequence (SEQ ID NO: 20) between exons 5 and 6, and the splice donor sequence (SEQ ID NO: 21) and splice acceptor sequence (SEQ ID NO: 22) between exons 6 and 7 of the UCP
  • the present invention relates to an uncoupling protein (UCP3) gene which is selectively expressed in skeletal muscle and brown fat, two tissues involved in energy expenditure in mammals.
  • UCP3 uncoupling protein
  • the invention relates to an alternative form of UCP3 designated UCP3-short form (UCP3sh) , which is also expressed in skeletal muscle.
  • UCP3 refers to UCP3 and UCP3sh.
  • the present invention relates to isolated (e.g., purified, essentially pure) UCP3 gene which is involved in regulation of thermogenesis (energy expenditure) in mammals.
  • the present invention relates to nucleic acids (e.g., DNA, RNA, oligonucleotides, polynucleotides) or characteristic portions thereof as described herein, obtained from natural sources, recombinantly produced or chemically synthesized which encode a mammalian UCP3 or functional portion thereof.
  • Nucleic acids referred to herein as “isolated” are nucleic acids substantially free of (separated away from) the nucleic acids of the genomic DNA or cellular RNA of their biological source of origin (e.g., as it exists in cells or in a mixture of nucleic acids such as a library) , and may have undergone further processing.
  • isolated nucleic acids include nucleic acids obtained by methods described herein, similar methods or other suitable methods, including essentially pure nucleic acids, nucleic acids produced by chemical synthesis or by combinations of biological and chemical methods, and recombinantly produced nucleic acids which are isolated (see e.g., Daugherty, B.L. et al . , Nucleic Acids Res .
  • Nucleic acids referred to herein as "recombinant” are nucleic acids which have been produced by recombinant DNA methodologies (recombinantly produced) .
  • Recombinant DNA methodologies include, for example, expression of UCP3 in a host cell containing or modified to contain DNA or RNA encoding UCP3 or expression of UCP3 using polymerase chain reaction (PCR) techniques .
  • PCR polymerase chain reaction
  • a "characteristic portion" of nucleic acids described herein refers to portions of a nucleotide sequence which encode a protein or polypeptide having at least one property, function or activity characteristic of UCP3 protein (e.g., predominantly expressed in brown adipose tissue and skeletal muscle; activity in regulating thermogenesis in skeletal muscle and brown adipose tissue; selectively uncoupling mitochondrial respiration in brown adipocytes and skeletal muscle) .
  • the term includes a nucleotide sequence which, through the degeneracy of the genetic code, encodes the same peptide as a peptide whose sequence is presented herein (e.g., SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO : 7).
  • the nucleic acids described herein may also contain a modification of the molecule such that the resulting gene product is sufficiently similar to that encoded by the unmodified sequence that it has essentially the same activity as the unmodified sequence.
  • Such a modification would be a "silent" codon substitution or an amino acid substitution, for instance, substitution of one codon encoding a hydrophobic amino acid to another codon encoding the same hydrophobic amino acid or substitution of one acidic amino acid for another acidic amino acid. See Ausubel, F.M., et al . , Current Protocols in Molecular Biology, Greene Publ . Assoc. and Wiley- Interscience 1989.
  • the nucleic acid or characteristic portion thereof encodes a protein or polypeptide having at least one property, activity or function characteristic of a mammalian UCP3 (as defined herein) , such as activity or function characteristic of a mammalian UCP3 (as defined herein) , such as activity in regulation of thermogenesis in skeletal muscle and brown adipose tissue.
  • the present invention also relates more specifically to isolated nucleic acids or a characteristic portion thereof, which encode mammalian UCP3 or variants thereof.
  • the invention relates to isolated nucleic acids that: (1) hybridize to (a) a nucleic acid encoding a mammalian UCP3 (e.g., human) , such as a nucleic acid having a nucleotide sequence as set forth or substantially as set forth in Figures 1A-1C (SEQ ID NO:l), Figures 2A-2B (SEQ ID NO: 2) or Figures 5A-5C (SEQ ID NO: 7) ; (b) the complement of the sequences of (a) ; or (c) characteristic portions of either of the foregoing (e.g., a portion comprising the open reading frame) ;
  • a mammalian UCP3 e.g., human
  • a protein or polypeptide having at least one property, activity of function characteristic of a UCP3 protein e.g., predominantly expressed in brown adipose tissue and skeletal muscle; activity in regulating thermogenesis in skeletal muscle and brown adipose tissue; selectively uncoupling mitochondrial respiration in brown adipocytes and skeletal muscle
  • a polypeptide having the amino acid sequence of a mammalian UCP3 e.g., SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 7 ; or
  • the nucleic acid shares at least about 75% nucleotide sequence similarity, and more preferably, at least about 90% nucleotide sequence similarity, to the sequence shown in Figures 1A-1C (SEQ ID NO:l), Figures 2A-2B (SEQ ID NO: 2) or Figures 5A-5C (SEQ ID NO: 7) .
  • Isolated nucleic acids meeting these criteria include nucleic acids having sequences identical to sequences of naturally occurring mammalian UCP3 or variants of the naturally occurring sequences which encode mammalian (human) UCP3. Such variants include mutants differing by the addition, deletion or substitution of one or more residues, modified nucleic acids in which one or more residues are modified (e.g., DNA or RNA analogs), and mutants comprising one or more modified residues.
  • Nucleic acids of the present invention may be RNA or DNA (e.g., cDNA, genomic DNA, and synthetic DNA).
  • the DNA may be double-stranded or single-stranded and, if single stranded, may be the coding strand or non-coding (anti- sense) strand.
  • the coding sequence which encodes the polypeptide may be identical to the coding sequence shown in Figures 1A-1C (SEQ ID NO:l), Figures 2A-2C (SEQ ID NO:
  • Figures 5A-5C (SEQ ID NO: 7) or may be a different coding sequence which, as a result of the redundancy or degeneracy of the genetic code, encodes the same polypeptide as the polypeptide encoded by the DNA of Figures 1A-1C (SEQ ID N0:1), Figures 2A-2B (SEQ ID NO : 2 ) or Figures 5A-5C (SEQ ID NO: 7) .
  • the nucleic acid (polynucleotide) which encodes a UCP3 polypeptide encoded by the UCP3 cDNA may include: only the coding sequence of a polypeptide; the coding sequence for a polypeptide and additional coding sequence such as a leader or secretory sequence; the coding sequence for a polypeptide (and optionally additional coding sequence) and non-coding sequence, such as introns or non-coding sequence 5' and/or 3' of the coding sequence.
  • Nucleic acids of the present invention including those which hybridize to a selected nucleic acid as described above, can be detected or isolated under high stringency conditions or moderate stringency conditions, for example.
  • High stringency conditions and “moderate stringency conditions” for nucleic acid hybridizations are explained at pages 2.10.1-2.10.16 (see particularly 2.10.8- 11) and pages 6.3.1-6 in Current Protocols in Molecular Biology (Ausubel, F.M. et al., eds., Vol. 1, Suppl . 26, 1991) , the teachings of which are hereby incorporated by reference.
  • Factors such as probe length, base composition, percent mismatch between the hybridizing sequences, temperature and ionic strength influence the stability of nucleic acid hybrids.
  • high or moderate stringency conditions can be determined empirically, and depend in part upon the characteristics of the known nucleic acid (e.g., DNA) and the other nucleic acids to be assessed for hybridization thereto.
  • Nucleic acids of the present invention that are characterized by their ability to hybridize (e.g., under high or moderate stringency conditions) to (a) a nucleic acid encoding a mammalian UCP3 (for example, the nucleic acid depicted in Figures 1A-1C (SEQ ID NO:l), Figures 2A-2B (SEQ ID NO:2), Figures 5A-5B (SEQ ID NO : 7) or characteristic portions thereof) ; (b) the complement of the nucleic acids of (a); or (c) a portion thereof, can also encode a protein or polypeptide having at least one property, activity or function characteristic of a mammalian UCP3 as defined herein, such as activity in regulation of thermogenesis in skeletal muscle and brown adipose tissue.
  • a nucleic acid encoding a mammalian UCP3 for example, the nucleic acid depicted in Figures 1A-1C (SEQ ID NO:l), Figures 2A-2B (SEQ ID
  • nucleic acid encodes a polypeptide which retains substantially the same biological function or activity as the polypeptide encoded by the DNA of Figures 1A-1C (SEQ ID NO:l), or Figures 2A-2B (SEQ ID NO:2) or Figures 5A-5C (SEQ ID NO: 7) .
  • Nucleic acids of the present invention can be used in the production of proteins or polypeptides.
  • a nucleic acid e.g., DNA
  • encoding a mammalian UCP3 can be incorporated into various constructs and vectors created for further manipulation of sequences or for production of the encoded polypeptide in suitable host cells as described above .
  • a further embodiment of the invention is antisense nucleic acid, which is complementary, in whole or in part, to a UCP3 sense strand, and can hybridize with it.
  • the antisense strand hybridizes to DNA, or its RNA counterpart (i.e., wherein T residues of the DNA are U residues in the RNA counterpart) .
  • antisense nucleic acid hybridizes to and inhibits the expression of the sense strand.
  • Antisense nucleic acids can be produced by standard techniques .
  • the antisense nucleic acid is wholly or partially complementary to and can hybridize with a target nucleic acid which encodes a mammalian UCP3.
  • antisense nucleic acid can be complementary to a target nucleic acid having the sequence shown as the open reading frame in Figures 1A-1C (SEQ ID N0:1), Figures 2A-2B (SEQ ID NO:2) , Figures 5A-5C (SEQ ID NO: 7) or to a portion thereof sufficient to allow hybridization.
  • the nucleic acids can also be used as probes (e.g., for in si tu hybridization) to assess regulation of thermogenesis in skeletal muscle and/or brown adipose tissue.
  • the nucleic acids can also be used as probes to detect and/or isolate (e.g., by hybridization with RNA or DNA) polymorphic or allelic variants, for example, in a sample (e.g., skeletal muscle, brown adipocytes, ,white blood cells) obtained from a host (e.g., a human) .
  • a sample e.g., skeletal muscle, brown adipocytes, ,white blood cells
  • a host e.g., a human
  • the presence or level of a particular variant in a sample (s) obtained from an individual as compared with the presence or level in a sample (s) from normal individuals, can be indicative of an association between abnormal regulation of thermogenesis (e.g., obesity) and a particular variant, which in turn can be used in the diagnosis of the condition.
  • thermogenesis e.g., obesity
  • the present invention also relates to isolated (e.g., pure, essentially pure) proteins or polypeptides designated mammalian UCP3 and variants of mammalian UCP3.
  • the isolated proteins of the present invention have at least one property, activity or function characteristic of a mammalian UCP3 (as defined herein) , such as activity in regulating (mediating) thermogenesis in skeletal muscle and brown adipose tissue or selectively uncoupling mitochondrial respiration in brown adipocytes and in skeletal muscle.
  • isolated proteins are proteins or polypeptides purified to a state beyond that in which they exist in mammalian cells.
  • isolated proteins or polypeptides include proteins or polypeptides obtained by methods described herein, similar methods or other suitable methods. They include essentially pure proteins or polypeptides, proteins or polypeptides produced by chemical synthesis (e.g., synthetic peptides) , or by combinations of biological and chemical methods, and recombinant proteins or polypeptides which are isolated.
  • the proteins can be obtained in an isolated state of at least about 50 % by weight, preferably at least about 75 % by weight, and more preferably, in essentially pure form.
  • Proteins or polypeptides referred to herein as “recombinant” are proteins or polypeptides produced by the expression of recombinant nucleic acids.
  • "mammalian UCP3" protein ref,ers to naturally occurring or endogenous mammalian UCP3s, proteins having an amino acid sequence which is the same as that of a naturally occurring or endogenous corresponding mammalian UCP3 (e.g., recombinant proteins), and functional variants of each of the foregoing (e.g., functional fragments and/or mutants produced via mutagenesis and/or recombinant techniques) .
  • the term includes mammalian UCP3 , glycosylated or unglycosylated UCP3 , polymorphic or allelic variants, and other isoforms of mammalian UCP3 (e.g., produced by alternative splicing or other cellular processes), and functional fragments.
  • Naturally occurring or endogenous mammalian UCP3s include wild type proteins such as mammalian UCP3 , polymorphic or allelic variants and other isoforms which occur naturally in mammals (e.g., primate, preferably human, murine, bovine) . Such proteins can be recovered from a source in which UCP3 is naturally produced, for example.
  • These mammalian proteins have the same amino acid sequence as naturally occurring or endogenous corresponding mammalian UCP3.
  • “Functional variants" of mammalian UCP3 include functional fragments, functional mutant proteins, and/or functional fusion proteins.
  • fragments or portions of mammalian UCP3 encompassed by the present invention include those having one or more amino acid deletions relative to the naturally occurring mammalian UCP3 protein (such as N-terminal, C-terminal or internal deletions) . Fragments or portions in which only contiguous amino acids have been deleted or in which non-contiguous amino acids have been deleted relative to naturally occurring mammalian UCP3 are also encompassed by the invention.
  • mutants or derivatives of mammalian UCP3 encompassed by the present invention include natural or artificial variants differing by the addition, deletion and/or substitution of one or more contiguous or non-contiguous amino acid residues, or modified polypeptides in which one or more residues is modified, and mutants comprising one or more modified residues.
  • mutants can be natural or artificial variants of mammalian UCP3 which differ from naturally occurring UCP3 by the addition, deletion and/or substitution of one or more contiguous or non-contiguous amino acid residues.
  • a “functional fragment or portion”, “functional mutant” and/or “functional fusion protein” of a mammalian UCP3 refers to an isolated protein or oligopeptide which has at least one property, activity or function characteristic of a mammalian UCP3 , such as activity in regulating (mediating) thermogenesis in skeletal muscle and brown adipose tissue or activity in selectively uncoupling mitochondrial respiration in brown adipocytes and in skeletal muscle.
  • Suitable fragments or mutants can be identified by screening.
  • the N-terminal, C-terminal, or internal regions of the protein can be deleted in a step- wise fashion and the resulting protein or polypeptide can be screened using a suitable assay, for example, by measuring mitochondrial membrane potential in a host cell expressing UCP3. Where the resulting protein displays activity in the assay, the resulting protein ("fragment") is functional.
  • the invention also encompasses fusion proteins, comprising a mammalian UCP3 as a first moiety, linked to a second moiety not occurring in the mammalian UCP3 found in nature.
  • the second moiety can be, for example, an amino acid, oligopeptide or polypeptide.
  • the first moiety can be in an N-terminal location, C-terminal location or internal location of the fusion protein.
  • the fusion protein comprises a mammalian UCP3 or portion thereof as the first moiety, and a sec.ond moiety comprising an affinity ligand (e.g., an enzyme, an antigen, epitope tag) joined to the first moiety.
  • the two components can be joined by a linker.
  • human UCP3 examples include proteins having an amino acid sequence as set forth or substantially as set forth in Figure 3 (SEQ ID NO: 3, SEQ ID NO: 4) and functional portions thereof.
  • An example of “mouse UCP3” includes a protein having an amino acid sequence as set forth or substantially set forth in Figure 6 (SEQ ID NO: 8) .
  • a human UCP3 protein, a mouse UCP3 protein or a variant thereof has an amino acid sequence which has at least about 75% identity, and more preferably at least about 90% identity, to the protein shown in Figure 3 (SEQ ID NO: 3, SEQ ID NO: 4) or Figure 6 (SEQ ID NO: 8) .
  • Another aspect of the invention relates to a method of producing a human UCP3 or variant (e.g., portion) thereof.
  • Recombinant protein can be obtained, for example, by the expression of a recombinant DNA molecule encoding a mammalian UCP3 or variant thereof in a suitable host cell.
  • Constructs suitable for the expression of a mammalian UCP3 or variant thereof are also provided. The constructs can be introduced into a suitable host cell, and cells which express a recombinant mammalian UCP3 or variant thereof, can be produced and maintained in culture.
  • Suitable host cells can be procaryotic, including bacterial cells such as E. coli , B . subtilis and or other suitable bacteria (e.g., Streptococci ) or eucaryotic, such as fungal or yeast cells (e.g., Pichia pastoris , Aspergillus species,
  • insects e.g., Sf9 insect cells
  • mammals e.g., Chinese hamster ovary cells (CHO) , COS cells, HuT 78 cells, 293 cells
  • CHO Chinese hamster ovary cells
  • COS cells HuT 78 cells
  • 293 cells See, e.g., Ausubel, F.M. et al., eds. Current Protocols in Molecular Biology, Greene Publishing Associates and John Wiley & Sons Inc., (1993)).
  • Host cells which produce a recombinant mammalian UCP3 or variants thereof can be produced as follows.
  • nucleic acid encoding all or part of the UCP3 protein or a functional portion thereof can be inserted into a nucleic acid vector, e.g., a DNA vector, such as a plasmid, virus or other suitable replicon for expression.
  • a nucleic acid vector e.g., a DNA vector, such as a plasmid, virus or other suitable replicon for expression.
  • a variety of vectors is available, including vectors which are maintained in single copy or multiple copy, or which become integrated into the host cell chromosome.
  • the transcriptional and/or translational signals of a mammalian UCP3 gene can be used to direct expression.
  • suitable expression vectors for the expression of a nucleic acid encoding all or part of the desired protein are available.
  • Suitable expression vectors can contain a number of components, including, but not limited to, one or more of the following: an origin of replication; a selectable marker gene; one or more expression control elements, such as a transcriptional control element (e.g., a promoter, an enhancer, terminator), and/or one or more translation signals; a signal sequence or leader sequence for membrane targeting or secretion (of mammalian origin or from a heterologous mammal or non-mammalian species) .
  • a signal sequence can be provided by the vector, the mammalian UCP3 coding sequence, or other source.
  • a promoter can be provided for expression in a suitable host cell. Promoters can be constitutive or inducible. The promoter is operably linked to nucleic acid encoding the mammalian UCP3 or variant thereof, and is capable of directing expression of the encoded polypeptide in the host cell .
  • suitable promoters for procaryotic e.g., lac, tac, T3 , T7 promoters for E. coli
  • eucaryotic e.g., yeast alcohol dehydrogenase (ADH1) , SV40, CMV
  • the expression vectors typically comprise a selectable marker for selection of host cells carrying the vector, and in the case of a replicable expression vector, also comprise an origin of replication.
  • Genes encoding products which confer antibiotic or drug resistance are common selectable markers and may be used in procaryotic (e.g., /3-lactamase gene (ampicillin resistance) , Tet gene for tetracycline resistance) and eucaryotic cells (e.g., neomycin (G418 or geneticin) , gpt (mycophenolic acid) , ampicillin, or hygromycin resistance genes) .
  • Dihydrofolate reductase marker genes permit selection with methotrexate in a variety of hosts.
  • auxotrophic markers of the host e.g., LEU2 , URA3 , HIS3
  • vectors which are capable of integrating into the genome of the host cell such as retroviral vectors
  • the present invention also relates to cells carrying these expression vectors.
  • a nucleic acid encoding a mammalian UCP3 or variant thereof is incorporated into a vector, operably linked to one or more expression control elements, and the construct is introduced into host cells which are maintained under conditions suitable for expression, whereby the encoded polypeptide is produced.
  • the construct can be introduced into cells by a method appropriate to the host cell selected (e.g., transformation, transfection, electroporation, infection) .
  • host cells comprising the construct are maintained under conditions appropriate for expression, (e.g., in the presence of inducer, suitable media supplemented with appropriate salts, growth factors, antibiotic, nutritional supplements, etc.) .
  • the encoded protein e.g., human UCP3 can be isolated from the host cells or medium.
  • Fusion proteins can also be produced in this manner.
  • some embodiments can be produced by the insertion of a mammalian UCP3 cDNA or portion thereof into a suitable expression vector, such as Bluescript ® II SK +/- (Stratagene) , pGEX-4T-2 (Pharmacia) , pcDNA-3 (Invitrogen) and pET-15b (Novagen) .
  • the resulting construct can then be introduced into a suitable host cell for expression.
  • fusion protein can be isolated or purified from a cell lysate by means of a suitable affinity matrix (see e.g., Current Protocols in Molecular Biology (Ausubel, F.M. et al . , eds., Vol.
  • affinity labels provide a means of detecting a fusion protein.
  • the cell surface expression or presence in a particular cell fraction of a fusion protein comprising an antigen or epitope affinity label can be detected by means of an appropriate antibody.
  • UCP3 nucleic acids DNA, RNA
  • protein can be used in a variety of ways.
  • UCP3 nucleic acids and proteins can be used to identify agents (e.g., molecules) that alter or modulate (enhance, inhibit) UCP3 expression and/or function.
  • agents e.g., molecules
  • UCP3 can be expressed in a host cell and effects of test compounds on mitochondrial membrane potential in the host cell could be assessed.
  • evaluation of mitochondrial respiration could also be performed in the host cell.
  • the present invention relates to a method of identifying an agent which alters UCP3 activity, wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into , a host cell(s) .
  • the host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed.
  • the host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential (mitochondrial membrane potential) of the cells is detected in the presence of the compound to be assessed. Detection of a change in mitochondrial electrical potential in the presence of the agent indicates that the agent alters UCP3 activity.
  • the invention relates to a method of identifying an agent which is an activator of UCP3 activity wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell(s) .
  • the host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed.
  • the host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential of the cells is detected in the presence of the compound to be assessed. Detection of a decrease or reduction of mitochondrial electrical potential in the presence of the agent indicates that the agent activates UCP3 activity.
  • the invention in another embodiment, relates to a method of identifying an agent which is an inhibitor of UCP3 activity, wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell (s) .
  • the host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed.
  • the host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential of the cells is detected in the presence of the compound to be assessed. Detection of an increase of mitochondrial electrical potential in the presence of the agent indicates that the agent inhibits UCP3 activity.
  • Detection of a change in mitochondrial electrical potential can be performed using a variety of techniques. For example, a change in mitochondrial electrical potential can be detected by measuring fluorescence of recombinant cells expressing UCP3. Decrease of fluorescence in the presence of the test compound, indicates a decrease of mitochondrial membrane potential (mitochondrial ⁇ ) , and vice versa for cases where fluorescence is increased. That is, increase of fluorescence in the presence of the test compound indicates an increase of mitochondrial ⁇ . If decrease in fluorescence is observed in UCP3 expressing cells, but not in control cells, then the test compound is an activator of UCP3. If an increase in fluorescence is observed in UCP3 expressing cells, but not in control cells, then the test compound is an inhibitor of UCP3.
  • a high throughput screen can be used to identify agents that activate (enhance) or inhibit UCP3 activity.
  • the method of identifying an agent which alters UCP3 activity can be performed as follows.
  • a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell(s) to produce recombinant host cells.
  • the recombinant host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed.
  • a fluorescent dye and the compound to be assessed are added to the recombinant host cells; the resulting combination is referred to as a test sample. Fluorescence is detected.
  • a decrease of fluorescence in the presence of the test compound occurs with a decrease in the mitochondrial electrical potential of the cells, which indicates that the agent is an activator of UCP3. Conversely, an increase of fluorescence in the presence of the test compound occurs with an increase in the mitochondrial electrical potential of the cells, which indicates that the agent is an inhibitor of UCP3.
  • Suitable dyes for use in this embodiment of the invention include, for example, JC-1, rhodamine 123, DiOCc[3], or tetramethylhydrosamine .
  • control can be used in the methods of detecting agents which alter UCP3 activity.
  • the control sample includes the same reagents but lacks the compound or agent being assessed; it is treated in the same manner as the test sample.
  • an agent which interacts with UCP3 directly or indirectly, and inhibits or enhances UCP3 expression and/or function is an agent which interacts with UCP3 directly or indirectly, and inhibits or enhances UCP3 expression and/or function.
  • the agent is an inhibitor which interferes with UCP3 directly (e.g., by binding UCP3) or indirectly (e.g., by blocking the ability of UCP3 to function in thermogenesis) .
  • an inhibitor of UCP3 protein is an antibody specific for UCP3 protein or a functional portion of UCP3 ; that is, the antibody binds the UCP3 protein.
  • the antibody can be specific for the protein encoded by the amino acid sequence of human UCP3 (SEQ ID NO: 3) , human UCP3sh (SEQ ID NO: 4) , mouse UCP3 (SEQ ID NO : 8) or portions thereof.
  • the inhibitor can be an agent other than an antibody (e.g., small organic molecule, protein or peptide) which binds UCP3 and blocks its activity.
  • the inhibitor can be an agent which mimics UCP3 structurally, but lacks its function.
  • it can be an agent which binds to or interacts with a molecule which UCP3 normally binds with or interacts with, thus blocking UCP3 from doing so and preventing it from exerting the effects it would normally exert.
  • the agent is an enhancer
  • UCP3 activator of UCP3 which increases the activity.of UCP3 (increases the effect of a given amount or level of UCP3) , increases the length of time it is effective (by preventing its degradation or otherwise prolonging the time during which it is active) or both either directly or indirectly.
  • UCP3 nucleic acids and proteins can be used to identify anti-obesity drugs which enhance UCP3 to induce uncoupling in brown fat and/or skeletal muscle, with the result that stored energy is released as heat.
  • sequences described herein can be used to detect UCP3 or DNA encoding UCP3 in a sample.
  • a labeled nucleic acid probe having all or a functional portion of the nucleotide sequence of UCP3 can be used in a method to detect UCP3 in a sample.
  • the sample is treated to render the nucleic acids in the sample available for hybridization to a nucleic acid probe, which can be DNA or RNA.
  • the resulting treated sample is combined with a labeled nucleic acid probe having all or a portion of the nucleotide sequence of UCP3 , under conditions appropriate for hybridization of complementary sequences to occur.
  • Detection of hybridization of nucleic acids from the sample with the labeled nucleic probe indicates the presence of UCP3 in a sample.
  • the presence of UCP3 mRNA is indicative of UCP3 expression.
  • Such a method can be used, for example, as a screen for normal or abnormal thermogenesis in skeletal muscle or brown adipose tissue.
  • a method of detecting UCP3 in a sample can be accomplished using an antibody directed against UCP3 or a portion of UCP3. Detection of specific binding to the antibody indicates the presence of UCP3 in the sample (e.g., ELISA) . This could reflect a pathological state associated with UCP3 and, thus, can be used diagnostically .
  • the sample for use in the methods of the present invention includes a suitable sample from, for example, a mammal, particularly a human.
  • the sample can be blood, skeletal muscle or brown adipose tissue.
  • the UCP3 sequences of the present invention can also be used to generate nonhuman gene knockout animals, such as mice, which lack UCP3 and transgenically overexpress UCP3.
  • nonhuman gene knockout animals such as mice, which lack UCP3 and transgenically overexpress UCP3.
  • UCP3 gene knockout mice can be generated and used to obtain further insight into the function of UCP3 as well as assess the specificity of UCP3 activators and inhibitors.
  • overexpression of UCP3 (e.g., human UCP3) in transgenic mice can be used as a means of creating a test system for UCP3 activators and inhibitors (e.g., against human UCP3) .
  • the UCP3 gene can be used to clone the UCP3 promoter/enhancer in order to identify regulators of UCP3 transcription.
  • UCP3 gene knockout animals include animals which completely or partially lack the UCP3 gene and/or UCP3 activity or function.
  • UCP3 plays a role in controlling protein wasting and production of gluconeogenic precursors by skeletal muscle via transport of one or more metabolites, which indicates that inhibitors of UCP3 can be used as a means of curtailing muscle wasting due to, for example, infection, (e.g., human immunodeficiency virus) cancer, tumor cachexia, muscle diseases (e.g., muscular dystrophy) or as a possible treatment for non- insulin dependent diabetes mellitus (NIDDM) .
  • infection e.g., human immunodeficiency virus
  • tumor cachexia e.g., muscle diseases (e.g., muscular dystrophy) or as a possible treatment for non- insulin dependent diabetes mellitus (NIDDM) .
  • NIDDM non- insulin dependent diabetes mellitus
  • the present invention relates to a method of inhibiting (partially, completely) protein catabolism in a mammal (e.g., human) comprising administering to the mammal an effective amount of an inhibitor of UCP3.
  • the invention also relates to a method of enhancing protein catabolism in a mammal comprising administering to the mammal an effective amount of an enhancer UCP3.
  • Also encompassed by the present invention is a method of inhibiting muscle wasting in a mammal comprising administering an effective amount of an enhancer of UCP3 to the mammal .
  • brown adipose tissue plays an important role in regulating energy balance in rodents (Himms-Hagen, J., Prog. Lipid Res . , 28:67-115 (1989)) .
  • the tissue is highly specialized for stimulated energy expenditure with a rich vascular supply, dense sympathetic innervation, and numerous mitochondria.
  • brown adipocytes are further distinguished from other cell types by their expression of all three uncoupling proteins: UCP1, which is expressed exclusively in brown adipocytes, UCP2 , which is expressed widely (Fleury, C, et al . f Nature Genetics , 15:269-272 (1997); Gimeno, R.E., et al . , Diabetes , in press (1997)) and, as demonstrated herein, UCP3 which is expressed selectively and abundantly in brown adipocytes and skeletal muscle. These features make brown fat ideally suited to regulated thermogenesis. 1
  • brown adipose tissue in large mammals is relatively limited and therefore brown fat may not be a significant regulator of human energy expenditure.
  • a number of studies in humans have implicated skeletal muscle as an important mediator of adaptive thermogenesis in humans (Astrup, A., et al . , Am. J. Physiol . , 248:E507- 515 (1985); Astrup, A., et al . , Am. J “ . Physiol . , 257:E340- 345 (1989); Zurlo, F., et al., J “ . Clin . Invest . , 86:1423- 1427. (1990) ; Simonsen, L., et al., Am.
  • brown fat and skeletal muscle have many features in common: a rich blood supply, a dense sympathetic innervation, and abundant mitochondria. In addition, both tissues express high levels of UCP3 mRNA.
  • UCP3 is minimally expressed in cardiac tissue. This is especially true given the general tendency for non-contractile muscle-specific genes to be expressed in both striated muscle types (skeletal and cardiac) . Abundant expression of UCP3 in two thermogenic tissues, skeletal muscle and brown fat, and relative lack of expression in other sites such as the heart, demonstrates that UCP3 is an important molecular mediator of adaptive thermogenesis.
  • the present invention provides for anti-obesity drug development wherein the UCP3 nucleic acids and protein can be used to identify, for example, enhancers (activators) of UCP3 which can be used to induce uncoupling.
  • enhancers activators
  • UCP3 which increase UCP1 expression and activity in brown fat are presently under development, but may have limited effects given the paucity of brown fat in humans.
  • UCP2 is another potential target. However, it is expressed in a number of critical organs and tissues and its activation could produce unwanted side effects.
  • Specific activators of UCP3 expression and/or function selectively increase energy expenditure in skeletal muscle and brown fat, two tissues that have the capacity for adaptive energy expenditure .
  • the present invention is further illustrated by the following examples, which are not intended to be limiting in any way.
  • Human Multiple Tissue Northern Blots (#7760-1, #7759-1 and ⁇ 7767-1) containing approximately 2 ⁇ g of polyA RNA per lane were purchased from Clontech Laboratories (Palo Alto, CA) . All hybridizations, membranes washes and membrane strippings were performed according to manufacturer' s specifications. The blots were first hybridized to a hUCP3 probe, washed and exposed to film for 1-18 hours, then stripped, rehybridized to a hUCP2 probe and exposed to film for 18 hours.
  • the hUCP3 probe was a 293 bp fragment corresponding to residues #211-308.
  • the hUCP2 probe was a 1125 bp fragment spanning the entire open reading frame.
  • Mouse Northern blots were generated using total RNA isolated from a number of tissues and equal loading of lanes was established using ethidium bromide florescence. The mouse Northern blots were hybridized using the hUCP3 probe described above .
  • Skeletal muscle and heart RNA was obtained from Clontech. Aliquots of 1, 3, 5 and 10 ⁇ g of adipose tissue and skeletal muscle I?NA and 10 ⁇ g aliquot of heart RNA were used for determination of UCP3 and mRNA levels.
  • the Rnase protection assay was performed as previously described (Vidal-Puig, A., et al., J " . Clin . Invest . , 97:2553-2561 (1997)).
  • a UCP-3 cDNA fragment was generated by reverse transcriptase-PCR using total RNA from human muscle as follows: two primers (5' GGA CTA CCA CCT GCT CAC TG 3' (SEQ ID NO : 23) and 5' CCC GTA ACA TAT GGA CTT T3 ' (SEQ ID NO: 24)) were designed to amplify 302 bp of the hUCP-3 sequence corresponding to residues #209-308.
  • the PCR product was subcloned into PGMT easy TA cloning vector (Promega Corp., Madison, WI) and linearized for riboprobe synthesis using Spe I . Identity and orientation of the UCP3 probe was confirmed by sequencing.
  • the antisense [ 32 P] -labeled UCP3 template was synthesized using T& RNA polymerase.
  • a human cyclin riboprobe was used as an internal control (Ambion, Inc., Austin, TX) .
  • UCP3 a third uncoupling homologue designated UCP3 has been cloned. It is distinguished from UCP1 and UCP2 by its selective expression in skeletal muscle and brown adipose tissue, two important sites for regulated energy expenditure in humans (Astrup, A., et al., Am. J. Physiol . , 248 -. E501-515 (1985); Astrup, A., et al., Am. J. Physiol . , 257:E340-345 (1989); Zurlo, F., et al . , J. Clin . Invest . , 86:1423-1427 (1990); Simonsen, L., et al., Am . J.
  • hUCP3 is 71% identical to hUCP2 and 57% identical to hUCPl . Because UCP3 is abundantly and selectively expressed in skeletal muscle and brown adipose tissue, UCP3 is likely to be an important mediator of regulated thermogenesis in humans.
  • UCP3 is minimally expressed in heart and other critical organs, it ,is a promising target for anti-obesity drug development aimed at increasing thermogenesis.
  • the expressed sequence tag (EST) database http://www.ncbi.nlm.gov) was screened for sequences homologous to UCP1.
  • One human EST deposited by the Washington University, St. Louis - Merck & Co. EST project, was identified which was similar but not identical to hUCPl and hUCP2 (accession no. AA192136, IMAGE clone no. 628529) .
  • This clone originated from a human skeletal muscle cDNA library (#937209, Stratagene, La Jolla, CA) .
  • the bacterial stock for clone 628529 was obtained from Genome Systems (St. Louis, MI) and was found to contain an insert of approximately 1.3kb, which included the C- terminal third of the open reading frame.
  • the coding region within clone 628529 was fully resequenced.
  • Full-length cDNA sequences were generated using the Marathon cDNA Amplification Kit, human skeletal muscle Marathon-Ready cDNA (both from Clontech Laboratories, Palo Alto, CA) and an antisense primer (5' -TTC ACC ACG TCC ACC CGG GGG GAT GCC ACC-3') (SEQ ID NO: 25) corresponding to the coding sequence presumed to represent hUCP3.
  • UCP3 cDNA sequence contains a 5' untranslated region of at least 183 bases, an open reading from of 936 bases, a 3' untranslated region of approximately 1.1 kb, a polyadenylation signal and a polyA tail ( Figures 1A-1C) .
  • the UCP3 mRNA transcript is predicted to be equal to or greater than 2.2 kb .
  • UCP3 protein, as deduced from the open reading frame, is composed of 312 amino acids and is estimated to have a molecular weight of approximately 34 kD ( Figure 3) .
  • hUCP3 is 71% identical to hUCP2 and 57% identical to hUCPl; and hUCP2 is 59% identical to hUCPl .
  • Many of the nonidentical residues in hUCP3 are conservative substitutions which in most cases correspond to residues found in either mUCP2 (Fleury, C, et al., Nature Genetics, 15:269-272 (1997); Gimeno, R.E., et al . , Diabetes, 46:900- 906 (1997)) or in UCP1 from various species (Klaus, S., et al . , Int . J. Biochem . , 23:791-801 (1991)).
  • UCP3 uncouples mitochondrial respiration.
  • Northern blot analyses were performed. UCP3 was abundantly expressed in skeletal muscle, generating a dominant mRNA transcript of approximately 2.4 kb. With longer exposure (18 hours), a much weaker UCP3 signal (2.4 kb) was detected in a large number of other tissues and organs. The longer exposures (18 hours) of the human UCP3 Northern blots also revealed the presence of a smaller mRNA transcript which had a similar size (approximately 1.6 kb) .
  • the 294 bp hUCP3 probe employed was 75% identical to hUCP2. Rehybridization of the same blots with hUCP2 confirmed that this smaller 1.6 kb signal was UCP2.
  • the UCP2 signal as previously reported (Fleury, C, et al . , Nature Genetics, 15:269-272 (1997); Gimeno, R.E., et al., Diabetes, 446:900-906 (1997)) was widely expressed. It was being most abundant in spleen, thymus, bone marrow, trachea, and lymph node, and somewhat less abundant in skeletal muscle as well as a number of other tissues.
  • UCP2 was also abundantly expressed in white adipose tissue as reported Gimeno, R.E., et al . , Diabetes, 446:900-906 (1997)) .
  • Gimeno, R.E., et al . , Diabetes, 446:900-906 (1997)) A comparison of hybridization signals for UCP2 and UCP3 suggests that UCP3 may be the dominant uncoupling protein transcript in human skeletal muscle.
  • a sensitive RNase protection assay was used to assess UCP3 mRNA expression in heart, skeletal muscle and white adipose tissue. No UCP3 signal could be detected in white adipose tissue. In heart, a very weak UCP3 signal was detected. The signal in heart was less than 1% of that detected in skeletal muscle.
  • mice In mice, abundant UCP3 expression was detected in skeletal muscle and brown fat. As with humans, little or o UCP3 expression was detected in other mouse tissues such as white adipose tissue, brain, kidney, liver and colon. s was observed in the human mRNA studies, a smaller transcript was detected in mouse samples as well. This smaller transcript most likely represents mUCP2 given that it was most abundant in white adipose tissue, a site of high-level UCP2 expression (Fleury, C, et al . , Nature Genetics, 15:269-272 (1997); Gimeno, R.E., et al . , Diabetes, in press (1997) ) . Of note, the hUCP3 probe is 73% identical to mUCP2.
  • Figure 4 is a hydrophilicity plot of human UCP2 and human UCP3 showing the hydrophobicity of protein across linear sequence.
  • UCP3 UCP3-short form
  • the UCP3sh transcript encodes a shortened version of the UCP3 protein. As shown in Figure 8, the UCP3sh transcript results when a polyadenylation/transcription termination signal (AATAAA) (SEQ ID NO: 26) located within intron 6 terminates transcription (see Figure 3) . However, this AATAAA (SEQ ID NO: 26) seems to be only partially effective in terminating transcription. When it does succeed in terminating transcription, the UCP3sh transcript is generated. When it fails to terminate transcription, transcription continues on through exon 7 and terminates at the exon 7 7AATAAA (SEQ ID NO: 26) signal. Splicing between exon 6 and exon 7 then occurs to generate the UCP3 transcript .
  • AATAAA polyadenylation/transcription termination signal
  • UCP3sh differs from UCP3 only by the absence of the last 37 amino acids. It is reasonable to expect that this is significant, since the region missing in UCP3sh is highly homologous to a region in UCP1 which has been implicated in mediating inhibition of uncoupling activity by purine nucleotides (Murdza-Inglis, D.L., et al . , J Biol Chem . 269:7435-7438 (1994)), As a result, it is reasonable to expect that UCP3sh is more active as an uncoupler than UCP3.
  • UCP3sh mRNA like UCP3 mRNA is extremely abundant in human skeletal muscle. In normal individuals, the leve.1 of UCP3sh mRNA is skeletal muscle is equal to or greater that the level of UCP3 mRNA. Preliminary studies have indicated that UCP3sh mRNA levels are reduced in obese individuals compared to lean individual. In contrast, UCP3 mRNA levels seem to be unchanged in obese individuals. These preliminary findings raise the possibility that UCP3sh is the more important UCP3 protein for body weight regulation.
  • mouse UCP3 gene was isolated using methods similar to those described in Example 1.
  • the mouse UCP3 nucleotide sequence (SEQ ID NO: 7) is shown in Figures 5A-5C, and the mouse UPC3 amino acid sequence is shown in Figure 6. Comparisions of mUCP3 versus mUCPl and mUP2 and human UCP3 are shown in Figure 7.
  • Recombinant cells expressing hUCP3 and cells not expressing UCP3 are grown in 96 well plates. On the day of analysis, the plates are rinsed and JC-1 dye is added to all wells plus or minus test compounds. Later, plates are washed and then, in the presence of the test compound, fluorescence is determined in a fluorometer. Decrease of fluorescence in the presence of the test compound, indicates a decrease of mitochondrial ⁇ (and vice versa for cases where fluorescence is increased) . That is, increase of fluorescence in the presence of the test compound indicates an increase of mitochondrial ⁇ . If decrease in fluorescence is observed in UCP3 expressing cells but not in control cells, then the test compound is an activator of UCP3. If an increase in fluorescence is observed in UCP3 expressing cells, but not in control cells, then the test compound is an inhibitor of JCP3.
  • JC-1 dye a delocalized lipophilic cation (DLC)
  • DLC delocalized lipophilic cation
  • the distinguishing feature of DLCs is that they are positively charged, yet lipophilic.
  • the lipophilic feature allows then to traverse membranes and the positive charge causes then to accumulate within mitochondria (negatively charged on the inside) .
  • This accumulation is proportional to ⁇ , the membrane electrical potential across the inner mitochondrial membrane, and follows the Nernst Equation shown below.
  • the mitochondrial ⁇ results from the protein electrochemical gradient across the inner mitochondrial membrane and represents the electrical portion of this gradient ( ⁇ pH represents the chemical portion of the gradient) .
  • a ⁇ of -60 mV corresponds to a DLC in/out ratio of 10 to 1
  • a ⁇ of -120 mV corresponds to a DLC in/out ratio of 100 to 1.
  • a change in ⁇ is amplified by a change in F jn /F ou[ .
  • ⁇ for most mitochondrial range between -50 mV and -160 mV.
  • Protonophore uncouplers such as DNP (dinitrophenol) , CCCP (carbonyl cyanide m-chlorophenyllhydrazone) , decrease ⁇ and, as a result, markedly decrease the accumulation of JC-1. Any drug which increases UCP activity is expected to have the same effect as DNP, CCCP or FCCP .
  • JC-1 has fluorescent features which makes it extremely useful as a monitor of mitochondrial ⁇ . Many dyes aggregate at high concentrations and this reduces fluorescence greatly (for example, rhodamine 123). Aggregates of JC-1 fluoresce intensely, and at higher wavelength than JC-1 monomers. Specifically, monomers emit at 527 nM (green) while J-aggregates emit at 590 nM (red) . Thus, high concentrations of JC-1 accumulate in mitochondria permitting the formation of aggregates. The accumulation of JC-1 and therefore the formation of aggregates is proportional to mitochondrial ⁇ . Aggregates do not form in other cellular locations due to insufficient accumulation of JC-1. Thus, detection of aggregates (as measured by fluorescence at 590 nM) is a sensitive indicator of mitochondrial ⁇ .
  • CX-1 cells were incubated with JC-1 (lOug/ml) with or without the uncoupler, FCCP, for 10 minutes, washed 3 times, trypsinized and then transferred as a cell suspension to a 1 cm quartz cuvette, in which fluorescence was monitored using a Kontron SFM25 fluorescent spectrophotometer .
  • JC-1 aggregate fluorescence can be monitored in living cells and that an uncoupler (FCCP) which is expected to have the same effect as a UCP activator markedly lowers "red” fluorescence. Fluorescence can also be monitored using a FACScan flow cytometer or in a single cell using fluorescence microscopy.
  • FCCP uncoupler
  • UCP3 is expressed abundantly and preferentially in skeletal muscle
  • UCP3 is expressed abundantly in skeletal muscle and brown fat.
  • Starvation - UCP3 was dramatically increased by starvation in mice and rats (-5-10 fold) .
  • 5 days of food restriction causes a 2.5-fold increase in UCP3 mRNA expression.
  • human UCP3 mRNA is significantly upregulated when transgenic mice bearing a human UCP3 PI clone are starved.
  • humans like rodents, increase UCP3 gene expression with starvation.
  • Starvation increases lipolysis in adipose tissue, causing a marked increase in blood levels of FFAs.
  • the increase in FFAs is thought to promote conservation of protein in skeletal muscle (when lipid fuels are abundant, the requirement for gluconeogenesis from muscle protein is reduced). Nicotinic acid inhibits lipolysis, restores FFA levels to fed values, and stimulates protein catabolism in skeletal muscle (Lowell and Goodman, Diabetics, 36:14-19 (1987) ) .
  • the experiment described herein shows that nicotinic acid treatment of fasted animals returned FFA levels to fed values, but increased UCP3 mRNA to .levels 2- fold higher than those observed in saline treated fasted controls.
  • Endotoxin Endotoxin - Endotoxin treatment of rats and mice resulted in a very large increase in UCP3 mRNA levels in skeletal muscle, but not in other tissues.
  • Endotoxin is a well known stimulator of protein catabolism in skeletal muscle .
  • Dexamethasone High dose dexamethasone treatment markedly stimulated UCP3 mRNA levels in skeletal muscle, but not in other tissues.
  • Dexamethasone is also a well known stimulator of protein catabolism in skeletal muscle.
  • Thyroid Hormone High dose thyroid treatment in rats stimulated UCP3 mRNA levels. Thyroid hormones seemed to have little or no effect in mice.
  • Thyroid hormone is also a well known stimulator of protein catabolism in skeletal muscle .
  • ob/ob and db/db mice fa/fa rats - These genetically obese rodents were generated and shown to have markedly increased UCP3 mRNA levels in skeletal muscle. It is likely that increased UCP3 mRNA levels in ob/ob mice contributed to elevated production of gluconeogenic precursors by muscle, thereby promoting non-insulin dependent diabetes mellitus (NIDDM) in these animals.
  • NIDDM non-insulin dependent diabetes mellitus
  • UCP3 plays an important role in regulating skeletal muscle protein catabolism (conversion of muscle protein to gluconeogenic precursors) .
  • Possible mechanisms by which UCP3 plays a role are the following:
  • UCP3 is a mitochondrial carrier which transports biosynthetic metabolites in and out of mitochondria during skeletal muscle protein catabolism (i.e., conversion of aspartate, glutamate, valine, isoleucine and leucine to gluconeogenic precursors alanine and glutamine) .
  • UCP3 is the aspartate/glutamate carrier and is rate limiting for operation of the aspartate/malate shuttle (transfers cytosolic NADH into the mitochondria) . Increased operation of this shuttle would reduce the cytosolic NADH/NAD ratio. It has been suggested that the cytosolic NADH/NAD ratio regulates muscle protein catabolism.
  • UCP3 is indeed a genuine uncoupling protein and increased UCP3 activity in catabolic states oxidizes the whole cell redox state (NADH/NAD ratio) , thereby stimulating protein catabolism and amino acid metabolism.
  • amino acids released from muscle protein are significantly metabolized inside the myocytes prior to their release into the bloodstream.
  • Alanine and glutamine represent approximately 12% amino acids in muscle protein but together represent > 50% of amino acids released by muscle during starvation. Thus, much of the alanine and glutamine released must be synthesized.
  • aspartate, asparginine, glutamate, leucine, isoleucine and valine represent > 30% of amino acids in muscle protein but are released in only small amounts during starvation. These amino acids are interconverted to alanine and glutamine by muscle.
  • amino acids such as glycine, cysteine, serine, threonine, methionine, proline, lysine, arginine, histidine, phenylalanine, tyrosine and tryptophan represents approximately 50% of muscle protein and are released either unchanged or as deaminated ⁇ -ketoacids .
  • Alanine is generated by the transamination of pyruvate.
  • the pyruvate (i.e., carbon) for alanine synthesis come from glycolysis while the nitrogen originates from aspartate, asparginine, glutamate, leucine, isoleucine and valine.
  • the released alanine is taken up by the liver and used to synthesize glucose.
  • the glucose is then returned to the muscle and is metabolized into pyruvate, thus completing the glucose-alanine cycle. It is important to note that no new glucose is synthesized by this process, the carbons are simply recycled.
  • the glucose-alanine cycle functions to conserve carbohydrate, but does not generate new carbohydrate.
  • the cycle also functions to transfer NH2 from amino acids with are metabolized (aspartate, asparginine, glutamate, leucine, isoleucine and valine) to the liver where it can be detoxified via the urea cycle.
  • Glutamine synthetase is the enzyme which converts glutamate to glutamine, the final step in glutamine synthesis.
  • glutamine synthetase gene expression in muscle is induced by starvation, streptozotocin diabetes, endotoxin treatment and dexamethasone. It is also interesting to note, as was seen with UCP3 , that these effects on glutamine synthetase gene expression are observed in skeletal muscle, but not in other tissues.
  • ADDRESSEE HAMILTON, BROOK, SMITH & REYNOLDS, P.C.
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • GGCCCATTCC CCGGGACCAT GGTTGGACTT
  • CAGCCCTCCG AAGTGCCTCC CACAACGGTT 240
  • MOLECULE TYPE protein
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid
  • DESCRIPTION: /desc "DNA”
  • MOLECULE TYPE other nucleic acid
  • MOLECULE TYPE other nucleic acid

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Abstract

The present invention relates to isolated and/or recombinant nucleic acids which encode a mammalian (e.g., human, mouse) uncoupling protein 3 (UCP3) and an alternative form of UCP3 designated UCP3-short form (UCP3sh). In addition, the present invention relates to nucleic acids which hybridize with the UCP3 nucleic acids described herein and functional portions thereof. Also encompassed by the invention are a nucleic acid construct comprising a nucleic acid which encodes a UCP3 protein and a host cell; a host cell comprising the nucleic acid construct which encodes UCP3; and a method for producing mammalian UCP3 comprising introducing into a host cell the nucleic acid construct which encodes UCP3 whereby the nucleic acid is expressed. The present invention also relates to isolated or recombinantly produced UCP3 protein and functional portions thereof. Also encompassed by the invention are a method of identifying an inhibitor (e.g., antibody) or enhancer of UCP3 expression and/or function, and the use of UCP3 inhibitors and enhancers. The present invention also relates to a method of detecting UCP3 in a sample obtained from a individual.

Description

UCP3 : AN UNCOUPLING PROTEIN HOMOLOGUE
RELATED APPLICATIONS
This application is a Continuation-in-Part of Application No. 08/892,745 entitled "UCP3 : An Uncoupling Protein Homologue Expressed Selectively and Abundantly in Skeletal Muscle and Brown Adipose Tissue" filed July 15, 1997 and claims benefit of U.S. provisional application number 60/046,254 entitled "Discovery of an Alternative Form of UCP3 , Designated UCP3-Short Form (UCPsh) ' filed May 12, 1997 and U.S. provisional application number
60/043,447, entitled "An Uncoupling Protein Homologue Expressed Selectively and Abundantly in Skeletal Muscle and Brown Adipose Tissue", filed April 9, 1997. The teachings of Application No. 08/892,745, U.S. provisional application number 60/043,447 and U.S. provisional application number 60/046,254 are incorporated herein by reference in their entirety.
GOVERNMENT FUNDING
This work was supported in part by the National Institutes of Health Grants DK02119 and DK49569.
Therefore, the U.S. Government has certain rights in the invention.
BACKGROUND
Calories are expended by mitochondria in a highly regulated fashion. Oxidation of fuels by the electron transport chain generates a proton electrochemical gradient across the inner mitochondrial membrane. Re-entry of protons via ATP synthesis drives conversion of ADP to ATP. Uncoupling proteins (UCPs) are inner mitochondrial membrane transporters which dissipate the proton gradient, releasing stored energy as heat (Nicholls, D.G., et al . , Physiol . Rev. , 64 : 1 - 64 (1984); Klingenberg, M., et al . , Trneds Biochem. Sci . , 15:108-112 (1990)). For this reason, UCPs are potentially important determinants of metabolic efficiency. UCP1, the first uncoupling protein to be identified (Lin, C.S., et al . , FEES Lett . , 113:299-303 (1980); Jacobsson, A., et al . , J. Biol . Chem . , 260 : 16250 - 16254 (1985); Bouillaud, F., et al., J. Biol . Chem . , 261 : 1487-1490 (1986)), is expressed exclusively in brown adipose tissue, an important site of energy expenditure in rodents (Himms-Hagen, J., Prog. Lipid Res . , 28:67-115 (1989) ) . However, UCP1 may be of lesser importahce in humans, in whom the amount of brown adipose tissue is limited. A second uncoupling protein, referred to UCP2 , was recently identified (Fleury, C., et al . , Nature Genetics, 15:269-272 (1997)) or UCPH (Gimeno, R.E., et al . , Diabetes, 46:900-906 (1997)). In contrast with UCP1, UCP2 is expressed in many tissues, including sites not thought to mediate energy expenditure which occurs in response to environmental temperature or diet (adaptive thermogenesis) .
A greater understanding of the genes involved in metabolism will provide new approaches and targets for regulating energy expenditure in mammals.
SUMMARY OF THE INVENTION
The present invention relates to an uncoupling protein (UCP3) gene which is selectively expressed in skeletal muscle and brown fat, two tissues involved in energy expenditure in mammals. In addition, the invention relates to an alternative form of UCP3 designated UCP3-slτ.ort form
(UCP3sh) , which is also expressed in skeletal muscle. Skeletal muscle particularly has a capacity for energy expenditure, or adaptive thermogenesis, in humans. As used herein, "UCP3" refers to UCP3 and UCP3sh. In particular, the present invention relates to isolated (e.g., purified, essentially pure) nucleic acids (oligonucleotides, nucleotide sequences) which encode a mammalian (e.g., human) UCP3 protein, and include for example, nucleic acids (DNA, RNA) obtained from natural sources, recombinantly produced or chemically synthesized. The nucleic acids of the present invention include nucleic acids encoding human UCP3 (SEQ ID NO : 1) , human UCP3sh (SEQ ID NO: 2) , mouse UCP3 (SEQ ID NO: 7) and characteristic portions thereof (e.g., probes, primers). The invention also includes complementary sequences (i.e., a complement) of SEQ ID NO: 1, SEQ ID NO : 2, SEQ ID NO : 7 and . characteristic portions thereof. The nucleic acids of the present invention encompass nucleic acids encoding a human UCP3 amino acid sequence (SEQ ID NO: 3) , a human UCP3sh form amino acid sequence (SEQ ID NO: 4) , a mouse UCP3 amino acid sequence (SEQ ID NO: 8) and characteristic portions thereof . The present invention further relates to isolated, recombinantly produced or synthetic nucleic acids which hybridize to the nucleic acids described herein (e.g., SEQ ID NO: 1, SEQ ID NO : 2, SEQ ID NO : 7 or characteristic portions thereof) and encode UCP3 protein (a protein having the same amino acid sequence as the amino acid sequences included herein and/or a protein which exhibits the same characteristics as the UCP3 protein described herein) . In particular, the invention relates to nucleic acids which hybridize, under moderate or high stringency, conditions, to SEQ ID NO: 1, SEQ ID NO : 2, SEQ ID NO : 7, characteristic portions thereof or other sequences which encode, UCP3.
Also encompassed by the present invention is a nucleic acid construct comprising nucleic acid which encodes a UCP3 protein (e.g., SEQ ID NO : 1, SEQ ID NO: 2, SEQ ID NO : 7 and characteristic portions thereof) , wherein the nucleic acid of the construct is expressed when the construct is present in an appropriate host cell. In one embodiment, the nucleic acid construct of the present invention is operably linked to exogenous regulatory sequence (s) such as a promoter and/or enhancer, whereby mammalian UCP3 is expressed when the host cell is maintained under conditions suitable for expression. The present invention also relates to a host cell comprising nucleic acid encoding mammalian UCP3 protein. Also encompassed by the present invention is a method for producing a mammalian UCP3 protein (human) . In the method, a nucleic acid construct comprising a nucleotide sequence (DNA, RNA) which encodes a mammalian UCP3 protein is introduced into a host cell, resulting in production of a recombinant host cell which contains a UCP3 coding sequence operably linked to an (i.e., at least one) expression control sequence. The host cells produced are maintained in a suitable medium under conditions appropriate for the nucleotide sequence to be expressed, whereby the encoded UCP3 is produced.
The present invention also relates to isolated (e.g., purified, essentially pure) UCP3 protein and includes, for example, UCP3 protein obtained from natural sources, recombinantly produced or chemically synthesized. For example, the UCP3 protein can be human UCP3 protein (SEQ ID NO: 3), human UCP3sh (SEQ ID N0:4), mouse UCP3 protein (SEQ ID NO: 8) or functional portions thereof.
The present invention also pertains to a method of identifying agents which modulate or alter (e.g., inhibit or enhance) UCP3 activity. An inhibitor of UCP3 interferes (partially or completely) with the function or bioactivity of UCP3 , directly or indirectly. An enhancer (activator) of UCP3 increases or enhances the function or bioactivity of UCP3 , directly or indirectly. In one embodiment, the present invention relates to a method of identifying an agent which alters UCP3 activity, wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell(s) . The host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed. The host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential of the cells is detected in the presence of the compound to be assessed. Detection of a change in mitochondrial electrical potential in the presence of the agent indicates that the agent alters UCP3 activity. In a particular embodiment, the invention relates to a method of identifying an agent which is an activator of UCP3 activity wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell (s) . The host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed. The host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential of the cells is detected in the presence of the compound to be assessed. Detection of a decrease or reduction of mitochondrial electrical potential in the presence of the agent indicates that the agent activates UCP3 activity. In another embodiment, the invention relates to a method of identifying an agent which is an inhibitor of UCP3 activity, wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell (s) . The host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed. The host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential of the cells is detected in the presence of the compound to be assessed. Detection of an increase of mitochondrial electrical potential in the presence of the agent indicates that the agent inhibits UCP3 activity. Methods of identifying agents which alter UCP3 activity can also be performed, as described herein, using a mixture of a membrane fraction, mitochondria and UCP3 (Jezek, et al . , J". Biol . Chem . 271:6199-6205 (1996)). Also encompassed by the present invention is an agent which interacts with UCP3 directly or indirectly, and inhibits or enhances UCP3 function. In one embodiment, the agent is an inhibitor which interferes with UCP3 directly (e.g., by binding UCP3) or indirectly (e.g., by blocking the ability of UCP3 to regulate thermogenesis in skeletal muscle and/or brown adipose tissue) . In a particular embodiment, an inhibitor of the UCP3 protein is an antibody specific for UCP3 protein or a portion of a UCP3 protein; that is, the antibody binds the UCP3 protein. For example, the antibody can be specific for the human UCP3 protein (SEQ ID NO: 3, SEQ ID NO : 4), the mouse UCP3 protein (SEQ ID NO: 8) or functional portions thereof. Alternatively, the inhibitor can be an agent other than an antibody (e.g., small organic molecule, protein, peptide) which binds UCP3 and blocks its activity. Furthermore, the inhibitor can be an agent which mimics UCP3 structurally but lacks its function. Alternatively, the inhibitor of UCP3 can be an agent which binds to or interacts with a molecule which UCP3 normally binds with or interacts with, thus blocking UCP3 from doing so and preventing it from exerting the effects it would normally exert. In another embodiment, the agent is an enhancer of UCP3 which increases the activity of UCP3 (increases thermogenesis in skeletal muscle and/or brown adipose tissue) , increases the length of time it is effective (by preventing its degradation or otherwise prolonging the time during which it is active) or both, either directly or indirectly.
The present invention also relates to antibodies (monoclonal or polyclonal) or functional portions thereof (e.g., an antigen binding portion such as an Fv, Fab, Fab', or F(ab')2 fragment) which bind mammalian UCP3.
Isolation of UCP3 makes it possible to detect UCP3 in a sample (e.g., test sample) . The present invention also relates to a method of detecting mammalian UCP3 in a sample (e.g., skeletal muscle, brown adipose tissue) obtained from an individual, such as a human. In one embodiment, the sample is treated to render nucleic acids in the sample available for hybridization to a nucleic acid probe (e.g., SEQ ID NO: 1, SEQ ID NO : 2, SEQ ID NO : 7 and/or characteristic portions thereof which bind to characteristic regions of UCP3 -encoding nucleic acids). The treated sample is combined with a nucleic acid probe (labeled or unlabeled) comprising or complementary to all or a characteristic portion of the nucleotide sequence encoding UCP3 protein, under conditions appropriate for hybridization of complementary nucleic acids to occur. Hybridization of nucleic acids in the treated sample with the nucleic acid probe is detected; the occurrence of hybridization indicates the presence of UCP3 protein in the sample. In another embodiment, the sample is contacted with an antibody which binds to UCP3 protein (e.g., SEQ ID NO: 3, SEQ ID NO : 4, SEQ ID NO : 8 or functional portions thereof) under conditions suitable for binding of the antibody to the mammalian UCP3. Binding of the antibody to a component of the sample is detected; binding of the antibody to a component of the sample indicates the presence of UCP3 protein in the sample.
Isolation of UCP3 also makes it possible to identify a promoter (s) and/or enhancer (s) of the UCP3 gene. Identification of promoters and/or enhancers of the UCP3 gene allow for identification of regulators of UCP3 transcription .
In addition, the present invention relates to transgenic non human animals (e.g., mice) which lack the UCP3 gene or contain a nonfunctional UCP3 gene such that UCP3 activity is lacking (e.g., UCP3 knockout mouse). The invention also relates to methods of producing UCP3 gene knockout animals, such as mice. UCP3 knockout mice can be used to further study the UCP3 gene and to assay for inhibitors and enhancers of UCP3.
The present invention also relates to a method of inhibiting (partially, completely) protein catabolism in a mammal (e.g., human) comprising administering to the mammal an effective amount of an inhibitor of UCP3. The invention also relates to a method of enhancing protein catabolism in a mammal comprising administering to the mammal an effective amount of an enhancer of UCP3. Also encompassed by the present invention is a method of inhibiting muscle wasting in a mammal comprising administering an effective amount of an inhibitor of UCP3 to the mammal .
.Discovery of the UCP3 gene provides for selective modulation (enhancement, inhibition) of the expression and/or function of the UCP3 gene in skeletal muscle and brown fat, two tissues involved in adaptive thermogenesis.
BRIEF DESCRIPTION OF THE FIGURES
Figures 1A-1C are the nucleotide sequence of human UCP3 (SEQ ID NO: 1) and three different amino acid sequences (SEQ ID NO : 27, SEQ ID NO: 28 and SEQ ID NO : 29) translated from SEQ ID NO: 1.
Figures 2A-2B are the nucleotide sequence of the UCP3- short form (UCP3sh) gene (SEQ ID NO : 2) and three different amino acid sequences (SEQ ID NO: 30, SEQ ID NO: 31 and SEQ ID NO: 32) translated from SEQ ID NO: 2. Figure 3 is a comparison of the human UCP3 amino acid sequence (SEQ ID NO: 3) , the human UCP3sh amino acid sequence (SEQ ID NO: 4) , the human UCP1 amino acid sequence (SEQ ID NO: 5) and the human UCP2 amino acid sequence (SEQ ID NO: 6) ; sequence alignments were performed using the
ALIGN program (Myers, E. ., and Miller, ., Computer Appl . Biosci . 4:11-17 (1988); and the Genbank accession numbers for hUCPl, hUCP2 and hUCP3 are U28480, U94592 and AF001787, respectively. Figure 4 is a graph of the hydrophilicity plots of human UCP2 and human UCP3 showing the hydrophobicity of protein across linear sequence; hydrophilicity plots for hUCP2 and hUCP3 were generated using the methods .of Kyte and Doolittle (Kyte, J. and Doolittle, R.F., J. Mol . Biol . 157:105-132 (1982) ) .
Figures 5A-5C are the nucleotide sequence of mouse UCP3 (SEQ ID NO: 7) and three different amino acid sequences (SEQ ID NO: 33, SEQ ID NO: 34, SEQ ID NO: 35) translated from SEQ ID NO: 7. Figure 6 is the amino acid sequence of mouse UCP3 (SEQ
ID NO: 8) .
.Figure 7 is a comparison of the mouse UCP3 amino acid sequence (SEQ ID NO: 8) with the mouse UCP1 amino acid sequence (SEQ ID NO: 9) , the mouse UCP2 amino acid sequence (SEQ ID NO: 10) and the human UCP3 amino acid sequence (SEQ ID NO: 3) ; the attached sequence and amino acid alignments, mUCP3 is 46% identical to mUCPl, 62% identical to mUCP2 but is 82% identical to hUCP3.
Figure 8 is a graphic representation of the genomic organization of the human UCP3 gene, and shows the splice donor sequence (SEQ ID NO: 11) and splice acceptor sequence (SEQ ID NO: 12) between exons 1 and 2, the splice donor sequence (SEQ ID NO: 13) and splice acceptor sequence (SEQ ID NO: 14) between exons 2 and 3, the splice donor sequence (SEQ ID NO: 15) and splice acceptor sequence (SEQ ID NO: 16) between exons 3 and 4, the splice donor sequence (SEQ ID NO: 17) and splice acceptor sequence (SEQ ID NO: 18) between exons 4 and 5, the splice donor sequence (SEQ ID NO: 19) and splice acceptor sequence (SEQ ID NO: 20) between exons 5 and 6, and the splice donor sequence (SEQ ID NO: 21) and splice acceptor sequence (SEQ ID NO: 22) between exons 6 and 7 of the UCP3 gene .
DETAILED DESCRIPTION OF THE INVENTION
The present invention relates to an uncoupling protein (UCP3) gene which is selectively expressed in skeletal muscle and brown fat, two tissues involved in energy expenditure in mammals. In addition, the invention relates to an alternative form of UCP3 designated UCP3-short form (UCP3sh) , which is also expressed in skeletal muscle. As used herein, "UCP3" refers to UCP3 and UCP3sh.
The present invention relates to isolated (e.g., purified, essentially pure) UCP3 gene which is involved in regulation of thermogenesis (energy expenditure) in mammals. In particular, the present invention relates to nucleic acids (e.g., DNA, RNA, oligonucleotides, polynucleotides) or characteristic portions thereof as described herein, obtained from natural sources, recombinantly produced or chemically synthesized which encode a mammalian UCP3 or functional portion thereof. Nucleic acids referred to herein as "isolated" are nucleic acids substantially free of (separated away from) the nucleic acids of the genomic DNA or cellular RNA of their biological source of origin (e.g., as it exists in cells or in a mixture of nucleic acids such as a library) , and may have undergone further processing. "Isolated" nucleic acids include nucleic acids obtained by methods described herein, similar methods or other suitable methods, including essentially pure nucleic acids, nucleic acids produced by chemical synthesis or by combinations of biological and chemical methods, and recombinantly produced nucleic acids which are isolated (see e.g., Daugherty, B.L. et al . , Nucleic Acids Res . , 19 (9) .-2471-2476 (1991); Lewis, A. P. and J.S. Crowe, Gene, 101 : 297-302 (1991)). Nucleic acids referred to herein as "recombinant" are nucleic acids which have been produced by recombinant DNA methodologies (recombinantly produced) . Recombinant DNA methodologies include, for example, expression of UCP3 in a host cell containing or modified to contain DNA or RNA encoding UCP3 or expression of UCP3 using polymerase chain reaction (PCR) techniques .
This invention includes characteristic portions of the nucleic acids described herein. As used herein, a "characteristic portion" of nucleic acids described herein refers to portions of a nucleotide sequence which encode a protein or polypeptide having at least one property, function or activity characteristic of UCP3 protein (e.g., predominantly expressed in brown adipose tissue and skeletal muscle; activity in regulating thermogenesis in skeletal muscle and brown adipose tissue; selectively uncoupling mitochondrial respiration in brown adipocytes and skeletal muscle) . In addition, the term includes a nucleotide sequence which, through the degeneracy of the genetic code, encodes the same peptide as a peptide whose sequence is presented herein (e.g., SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO : 7). The nucleic acids described herein may also contain a modification of the molecule such that the resulting gene product is sufficiently similar to that encoded by the unmodified sequence that it has essentially the same activity as the unmodified sequence. An example of such a modification would be a "silent" codon substitution or an amino acid substitution, for instance, substitution of one codon encoding a hydrophobic amino acid to another codon encoding the same hydrophobic amino acid or substitution of one acidic amino acid for another acidic amino acid. See Ausubel, F.M., et al . , Current Protocols in Molecular Biology, Greene Publ . Assoc. and Wiley- Interscience 1989.
In one embodiment, the nucleic acid or characteristic portion thereof encodes a protein or polypeptide having at least one property, activity or function characteristic of a mammalian UCP3 (as defined herein) , such as activity or function characteristic of a mammalian UCP3 (as defined herein) , such as activity in regulation of thermogenesis in skeletal muscle and brown adipose tissue.
The present invention also relates more specifically to isolated nucleic acids or a characteristic portion thereof, which encode mammalian UCP3 or variants thereof. The invention relates to isolated nucleic acids that: (1) hybridize to (a) a nucleic acid encoding a mammalian UCP3 (e.g., human) , such as a nucleic acid having a nucleotide sequence as set forth or substantially as set forth in Figures 1A-1C (SEQ ID NO:l), Figures 2A-2B (SEQ ID NO: 2) or Figures 5A-5C (SEQ ID NO: 7) ; (b) the complement of the sequences of (a) ; or (c) characteristic portions of either of the foregoing (e.g., a portion comprising the open reading frame) ;
(2) encode a protein or polypeptide having at least one property, activity of function characteristic of a UCP3 protein (e.g., predominantly expressed in brown adipose tissue and skeletal muscle; activity in regulating thermogenesis in skeletal muscle and brown adipose tissue; selectively uncoupling mitochondrial respiration in brown adipocytes and skeletal muscle ) (3) encode a polypeptide having the amino acid sequence of a mammalian UCP3 (e.g., SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 7) ; or
(4) have a combination of these characteristics. In one embodiment, the nucleic acid shares at least about 75% nucleotide sequence similarity, and more preferably, at least about 90% nucleotide sequence similarity, to the sequence shown in Figures 1A-1C (SEQ ID NO:l), Figures 2A-2B (SEQ ID NO: 2) or Figures 5A-5C (SEQ ID NO: 7) . Isolated nucleic acids meeting these criteria include nucleic acids having sequences identical to sequences of naturally occurring mammalian UCP3 or variants of the naturally occurring sequences which encode mammalian (human) UCP3. Such variants include mutants differing by the addition, deletion or substitution of one or more residues, modified nucleic acids in which one or more residues are modified (e.g., DNA or RNA analogs), and mutants comprising one or more modified residues.
Nucleic acids of the present invention may be RNA or DNA (e.g., cDNA, genomic DNA, and synthetic DNA). The DNA may be double-stranded or single-stranded and, if single stranded, may be the coding strand or non-coding (anti- sense) strand. The coding sequence which encodes the polypeptide may be identical to the coding sequence shown in Figures 1A-1C (SEQ ID NO:l), Figures 2A-2C (SEQ ID
NO:2) , Figures 5A-5C (SEQ ID NO: 7) or may be a different coding sequence which, as a result of the redundancy or degeneracy of the genetic code, encodes the same polypeptide as the polypeptide encoded by the DNA of Figures 1A-1C (SEQ ID N0:1), Figures 2A-2B (SEQ ID NO : 2 ) or Figures 5A-5C (SEQ ID NO: 7) .
The nucleic acid (polynucleotide) which encodes a UCP3 polypeptide encoded by the UCP3 cDNA may include: only the coding sequence of a polypeptide; the coding sequence for a polypeptide and additional coding sequence such as a leader or secretory sequence; the coding sequence for a polypeptide (and optionally additional coding sequence) and non-coding sequence, such as introns or non-coding sequence 5' and/or 3' of the coding sequence. Nucleic acids of the present invention, including those which hybridize to a selected nucleic acid as described above, can be detected or isolated under high stringency conditions or moderate stringency conditions, for example. "High stringency conditions" and "moderate stringency conditions" for nucleic acid hybridizations are explained at pages 2.10.1-2.10.16 (see particularly 2.10.8- 11) and pages 6.3.1-6 in Current Protocols in Molecular Biology (Ausubel, F.M. et al., eds., Vol. 1, Suppl . 26, 1991) , the teachings of which are hereby incorporated by reference. Factors such as probe length, base composition, percent mismatch between the hybridizing sequences, temperature and ionic strength influence the stability of nucleic acid hybrids. Thus, high or moderate stringency conditions can be determined empirically, and depend in part upon the characteristics of the known nucleic acid (e.g., DNA) and the other nucleic acids to be assessed for hybridization thereto.
Nucleic acids of the present invention that are characterized by their ability to hybridize (e.g., under high or moderate stringency conditions) to (a) a nucleic acid encoding a mammalian UCP3 (for example, the nucleic acid depicted in Figures 1A-1C (SEQ ID NO:l), Figures 2A-2B (SEQ ID NO:2), Figures 5A-5B (SEQ ID NO : 7) or characteristic portions thereof) ; (b) the complement of the nucleic acids of (a); or (c) a portion thereof, can also encode a protein or polypeptide having at least one property, activity or function characteristic of a mammalian UCP3 as defined herein, such as activity in regulation of thermogenesis in skeletal muscle and brown adipose tissue. In a preferred embodiment the nucleic acid encodes a polypeptide which retains substantially the same biological function or activity as the polypeptide encoded by the DNA of Figures 1A-1C (SEQ ID NO:l), or Figures 2A-2B (SEQ ID NO:2) or Figures 5A-5C (SEQ ID NO: 7) . Nucleic acids of the present invention can be used in the production of proteins or polypeptides. For example, a nucleic acid (e.g., DNA) encoding a mammalian UCP3 can be incorporated into various constructs and vectors created for further manipulation of sequences or for production of the encoded polypeptide in suitable host cells as described above .
A further embodiment of the invention is antisense nucleic acid, which is complementary, in whole or in part, to a UCP3 sense strand, and can hybridize with it. The antisense strand hybridizes to DNA, or its RNA counterpart (i.e., wherein T residues of the DNA are U residues in the RNA counterpart) . When introduced into a cell, antisense nucleic acid hybridizes to and inhibits the expression of the sense strand. Antisense nucleic acids can be produced by standard techniques .
In another embodiment, the antisense nucleic acid is wholly or partially complementary to and can hybridize with a target nucleic acid which encodes a mammalian UCP3. For example, antisense nucleic acid can be complementary to a target nucleic acid having the sequence shown as the open reading frame in Figures 1A-1C (SEQ ID N0:1), Figures 2A-2B (SEQ ID NO:2) , Figures 5A-5C (SEQ ID NO: 7) or to a portion thereof sufficient to allow hybridization. The nucleic acids can also be used as probes (e.g., for in si tu hybridization) to assess regulation of thermogenesis in skeletal muscle and/or brown adipose tissue. The nucleic acids can also be used as probes to detect and/or isolate (e.g., by hybridization with RNA or DNA) polymorphic or allelic variants, for example, in a sample (e.g., skeletal muscle, brown adipocytes, ,white blood cells) obtained from a host (e.g., a human) . Moreover, the presence or level of a particular variant in a sample (s) obtained from an individual, as compared with the presence or level in a sample (s) from normal individuals, can be indicative of an association between abnormal regulation of thermogenesis (e.g., obesity) and a particular variant, which in turn can be used in the diagnosis of the condition. The present invention also relates to isolated (e.g., pure, essentially pure) proteins or polypeptides designated mammalian UCP3 and variants of mammalian UCP3. In a preferred embodiment, the isolated proteins of the present invention have at least one property, activity or function characteristic of a mammalian UCP3 (as defined herein) , such as activity in regulating (mediating) thermogenesis in skeletal muscle and brown adipose tissue or selectively uncoupling mitochondrial respiration in brown adipocytes and in skeletal muscle. Proteins or polypeptides referred to herein as
"isolated" are proteins or polypeptides purified to a state beyond that in which they exist in mammalian cells. "Isolated" proteins or polypeptides include proteins or polypeptides obtained by methods described herein, similar methods or other suitable methods. They include essentially pure proteins or polypeptides, proteins or polypeptides produced by chemical synthesis (e.g., synthetic peptides) , or by combinations of biological and chemical methods, and recombinant proteins or polypeptides which are isolated. The proteins can be obtained in an isolated state of at least about 50 % by weight, preferably at least about 75 % by weight, and more preferably, in essentially pure form. Proteins or polypeptides referred to herein as "recombinant" are proteins or polypeptides produced by the expression of recombinant nucleic acids. As used herein, "mammalian UCP3" protein ref,ers to naturally occurring or endogenous mammalian UCP3s, proteins having an amino acid sequence which is the same as that of a naturally occurring or endogenous corresponding mammalian UCP3 (e.g., recombinant proteins), and functional variants of each of the foregoing (e.g., functional fragments and/or mutants produced via mutagenesis and/or recombinant techniques) . Accordingly, as defined herein, the term includes mammalian UCP3 , glycosylated or unglycosylated UCP3 , polymorphic or allelic variants, and other isoforms of mammalian UCP3 (e.g., produced by alternative splicing or other cellular processes), and functional fragments. Naturally occurring or endogenous mammalian UCP3s include wild type proteins such as mammalian UCP3 , polymorphic or allelic variants and other isoforms which occur naturally in mammals (e.g., primate, preferably human, murine, bovine) . Such proteins can be recovered from a source in which UCP3 is naturally produced, for example. These mammalian proteins have the same amino acid sequence as naturally occurring or endogenous corresponding mammalian UCP3.
"Functional variants" of mammalian UCP3 include functional fragments, functional mutant proteins, and/or functional fusion proteins. Generally, fragments or portions of mammalian UCP3 encompassed by the present invention include those having one or more amino acid deletions relative to the naturally occurring mammalian UCP3 protein (such as N-terminal, C-terminal or internal deletions) . Fragments or portions in which only contiguous amino acids have been deleted or in which non-contiguous amino acids have been deleted relative to naturally occurring mammalian UCP3 are also encompassed by the invention.
Generally, mutants or derivatives of mammalian UCP3 , encompassed by the present invention include natural or artificial variants differing by the addition, deletion and/or substitution of one or more contiguous or non-contiguous amino acid residues, or modified polypeptides in which one or more residues is modified, and mutants comprising one or more modified residues. For example, mutants can be natural or artificial variants of mammalian UCP3 which differ from naturally occurring UCP3 by the addition, deletion and/or substitution of one or more contiguous or non-contiguous amino acid residues. A "functional fragment or portion", "functional mutant" and/or "functional fusion protein" of a mammalian UCP3 refers to an isolated protein or oligopeptide which has at least one property, activity or function characteristic of a mammalian UCP3 , such as activity in regulating (mediating) thermogenesis in skeletal muscle and brown adipose tissue or activity in selectively uncoupling mitochondrial respiration in brown adipocytes and in skeletal muscle.
Suitable fragments or mutants can be identified by screening. For example, the N-terminal, C-terminal, or internal regions of the protein can be deleted in a step- wise fashion and the resulting protein or polypeptide can be screened using a suitable assay, for example, by measuring mitochondrial membrane potential in a host cell expressing UCP3. Where the resulting protein displays activity in the assay, the resulting protein ("fragment") is functional.
The invention also encompasses fusion proteins, comprising a mammalian UCP3 as a first moiety, linked to a second moiety not occurring in the mammalian UCP3 found in nature. Thus, the second moiety can be, for example, an amino acid, oligopeptide or polypeptide. The first moiety can be in an N-terminal location, C-terminal location or internal location of the fusion protein. In one embodiment, the fusion protein comprises a mammalian UCP3 or portion thereof as the first moiety, and a sec.ond moiety comprising an affinity ligand (e.g., an enzyme, an antigen, epitope tag) joined to the first moiety. Optionally, the two components can be joined by a linker. Examples of "human UCP3 " include proteins having an amino acid sequence as set forth or substantially as set forth in Figure 3 (SEQ ID NO: 3, SEQ ID NO: 4) and functional portions thereof. An example of "mouse UCP3 " includes a protein having an amino acid sequence as set forth or substantially set forth in Figure 6 (SEQ ID NO: 8) . In preferred embodiments, a human UCP3 protein, a mouse UCP3 protein or a variant thereof has an amino acid sequence which has at least about 75% identity, and more preferably at least about 90% identity, to the protein shown in Figure 3 (SEQ ID NO: 3, SEQ ID NO: 4) or Figure 6 (SEQ ID NO: 8) .
Another aspect of the invention relates to a method of producing a human UCP3 or variant (e.g., portion) thereof. Recombinant protein can be obtained, for example, by the expression of a recombinant DNA molecule encoding a mammalian UCP3 or variant thereof in a suitable host cell. Constructs suitable for the expression of a mammalian UCP3 or variant thereof are also provided. The constructs can be introduced into a suitable host cell, and cells which express a recombinant mammalian UCP3 or variant thereof, can be produced and maintained in culture. Such cells are useful for a variety of purposes, and can be used in the production of protein for characterization, isolation and/or purification, (e.g., affinity purification), and as immunogens , for instance. Suitable host cells can be procaryotic, including bacterial cells such as E. coli , B . subtilis and or other suitable bacteria (e.g., Streptococci ) or eucaryotic, such as fungal or yeast cells (e.g., Pichia pastoris , Aspergillus species,
Saccharomyces cerevisiae, Schizosaccharomyces pombe, Neurospora crassa) , or other lower eucaryotic cells, and cells of higher eucaryotes such as those from insects (e.g., Sf9 insect cells) or mammals (e.g., Chinese hamster ovary cells (CHO) , COS cells, HuT 78 cells, 293 cells) . (See, e.g., Ausubel, F.M. et al., eds. Current Protocols in Molecular Biology, Greene Publishing Associates and John Wiley & Sons Inc., (1993)).
Host cells which produce a recombinant mammalian UCP3 or variants thereof can be produced as follows. For example, nucleic acid encoding all or part of the UCP3 protein or a functional portion thereof can be inserted into a nucleic acid vector, e.g., a DNA vector, such as a plasmid, virus or other suitable replicon for expression. A variety of vectors is available, including vectors which are maintained in single copy or multiple copy, or which become integrated into the host cell chromosome.
The transcriptional and/or translational signals of a mammalian UCP3 gene can be used to direct expression. Alternatively, suitable expression vectors for the expression of a nucleic acid encoding all or part of the desired protein are available. Suitable expression vectors can contain a number of components, including, but not limited to, one or more of the following: an origin of replication; a selectable marker gene; one or more expression control elements, such as a transcriptional control element (e.g., a promoter, an enhancer, terminator), and/or one or more translation signals; a signal sequence or leader sequence for membrane targeting or secretion (of mammalian origin or from a heterologous mammal or non-mammalian species) . In a construct, a signal sequence can be provided by the vector, the mammalian UCP3 coding sequence, or other source.
A promoter can be provided for expression in a suitable host cell. Promoters can be constitutive or inducible. The promoter is operably linked to nucleic acid encoding the mammalian UCP3 or variant thereof, and is capable of directing expression of the encoded polypeptide in the host cell . A variety of suitable promoters for procaryotic (e.g., lac, tac, T3 , T7 promoters for E. coli ) and eucaryotic (e.g., yeast alcohol dehydrogenase (ADH1) , SV40, CMV) hosts is available.
In addition, the expression vectors typically comprise a selectable marker for selection of host cells carrying the vector, and in the case of a replicable expression vector, also comprise an origin of replication. Genes encoding products which confer antibiotic or drug resistance are common selectable markers and may be used in procaryotic (e.g., /3-lactamase gene (ampicillin resistance) , Tet gene for tetracycline resistance) and eucaryotic cells (e.g., neomycin (G418 or geneticin) , gpt (mycophenolic acid) , ampicillin, or hygromycin resistance genes) . Dihydrofolate reductase marker genes permit selection with methotrexate in a variety of hosts. Genes encoding the gene product of auxotrophic markers of the host (e.g., LEU2 , URA3 , HIS3 ) are often used as selectable markers in yeast. Use of viral (e.g., baculovirus) or phage vectors, and vectors which are capable of integrating into the genome of the host cell, such as retroviral vectors, are also contemplated. The present invention also relates to cells carrying these expression vectors.
For example, a nucleic acid encoding a mammalian UCP3 or variant thereof is incorporated into a vector, operably linked to one or more expression control elements, and the construct is introduced into host cells which are maintained under conditions suitable for expression, whereby the encoded polypeptide is produced. The construct can be introduced into cells by a method appropriate to the host cell selected (e.g., transformation, transfection, electroporation, infection) . For production of a protein, host cells comprising the construct are maintained under conditions appropriate for expression, (e.g., in the presence of inducer, suitable media supplemented with appropriate salts, growth factors, antibiotic, nutritional supplements, etc.) . The encoded protein (e.g., human UCP3) can be isolated from the host cells or medium.
Fusion proteins can also be produced in this manner. For example, some embodiments can be produced by the insertion of a mammalian UCP3 cDNA or portion thereof into a suitable expression vector, such as Bluescript®II SK +/- (Stratagene) , pGEX-4T-2 (Pharmacia) , pcDNA-3 (Invitrogen) and pET-15b (Novagen) . The resulting construct can then be introduced into a suitable host cell for expression. Upon expression, fusion protein can be isolated or purified from a cell lysate by means of a suitable affinity matrix (see e.g., Current Protocols in Molecular Biology (Ausubel, F.M. et al . , eds., Vol. 2, Suppl . 26, pp. 16.4.1-16.7.;8 (1991)). In addition, affinity labels provide a means of detecting a fusion protein. For example, the cell surface expression or presence in a particular cell fraction of a fusion protein comprising an antigen or epitope affinity label can be detected by means of an appropriate antibody.
The UCP3 nucleic acids (DNA, RNA) and protein can be used in a variety of ways. For example, UCP3 nucleic acids and proteins can be used to identify agents (e.g., molecules) that alter or modulate (enhance, inhibit) UCP3 expression and/or function. For example, UCP3 can be expressed in a host cell and effects of test compounds on mitochondrial membrane potential in the host cell could be assessed. In addition, evaluation of mitochondrial respiration could also be performed in the host cell.
In one embodiment, the present invention relates to a method of identifying an agent which alters UCP3 activity, wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into, a host cell(s) . The host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed. The host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential (mitochondrial membrane potential) of the cells is detected in the presence of the compound to be assessed. Detection of a change in mitochondrial electrical potential in the presence of the agent indicates that the agent alters UCP3 activity. In a particular embodiment, the invention relates to a method of identifying an agent which is an activator of UCP3 activity wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell(s) . The host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed. The host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential of the cells is detected in the presence of the compound to be assessed. Detection of a decrease or reduction of mitochondrial electrical potential in the presence of the agent indicates that the agent activates UCP3 activity. In another embodiment, the invention relates to a method of identifying an agent which is an inhibitor of UCP3 activity, wherein a nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell (s) . The host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed. The host cells are then contacted with a compound to be assessed (an agent) and the mitochondrial electrical potential of the cells is detected in the presence of the compound to be assessed. Detection of an increase of mitochondrial electrical potential in the presence of the agent indicates that the agent inhibits UCP3 activity.
Detection of a change in mitochondrial electrical potential can be performed using a variety of techniques. For example, a change in mitochondrial electrical potential can be detected by measuring fluorescence of recombinant cells expressing UCP3. Decrease of fluorescence in the presence of the test compound, indicates a decrease of mitochondrial membrane potential (mitochondrial Δ ) , and vice versa for cases where fluorescence is increased. That is, increase of fluorescence in the presence of the test compound indicates an increase of mitochondrial ΔΨ. If decrease in fluorescence is observed in UCP3 expressing cells, but not in control cells, then the test compound is an activator of UCP3. If an increase in fluorescence is observed in UCP3 expressing cells, but not in control cells, then the test compound is an inhibitor of UCP3.
In a particular embodiment, as described in 'Example 3, a high throughput screen can be used to identify agents that activate (enhance) or inhibit UCP3 activity. For example, the method of identifying an agent which alters UCP3 activity can be performed as follows. A nucleic acid construct comprising nucleic acid which encodes a mammalian UCP3 is introduced into a host cell(s) to produce recombinant host cells. The recombinant host cells produced are maintained under conditions appropriate for expression of the encoded mammalian UCP3 , whereby the nucleic acid is expressed. A fluorescent dye and the compound to be assessed are added to the recombinant host cells; the resulting combination is referred to as a test sample. Fluorescence is detected. A decrease of fluorescence in the presence of the test compound occurs with a decrease in the mitochondrial electrical potential of the cells, which indicates that the agent is an activator of UCP3. Conversely, an increase of fluorescence in the presence of the test compound occurs with an increase in the mitochondrial electrical potential of the cells, which indicates that the agent is an inhibitor of UCP3. Suitable dyes for use in this embodiment of the invention include, for example, JC-1, rhodamine 123, DiOCc[3], or tetramethylhydrosamine .
A control can be used in the methods of detecting agents which alter UCP3 activity. For example, the control sample includes the same reagents but lacks the compound or agent being assessed; it is treated in the same manner as the test sample.
Also encompassed by the present invention is an agent which interacts with UCP3 directly or indirectly, and inhibits or enhances UCP3 expression and/or function. In one embodiment, the agent is an inhibitor which interferes with UCP3 directly (e.g., by binding UCP3) or indirectly (e.g., by blocking the ability of UCP3 to function in thermogenesis) . In a particular embodiment, an inhibitor of UCP3 protein is an antibody specific for UCP3 protein or a functional portion of UCP3 ; that is, the antibody binds the UCP3 protein. For example, the antibody can be specific for the protein encoded by the amino acid sequence of human UCP3 (SEQ ID NO: 3) , human UCP3sh (SEQ ID NO: 4) , mouse UCP3 (SEQ ID NO : 8) or portions thereof.
Alternatively, the inhibitor can be an agent other than an antibody (e.g., small organic molecule, protein or peptide) which binds UCP3 and blocks its activity. For example, the inhibitor can be an agent which mimics UCP3 structurally, but lacks its function. Alternatively, it can be an agent which binds to or interacts with a molecule which UCP3 normally binds with or interacts with, thus blocking UCP3 from doing so and preventing it from exerting the effects it would normally exert. In another embodiment, the agent is an enhancer
(activator) of UCP3 which increases the activity.of UCP3 (increases the effect of a given amount or level of UCP3) , increases the length of time it is effective (by preventing its degradation or otherwise prolonging the time during which it is active) or both either directly or indirectly. For example, UCP3 nucleic acids and proteins can be used to identify anti-obesity drugs which enhance UCP3 to induce uncoupling in brown fat and/or skeletal muscle, with the result that stored energy is released as heat. In another embodiment , the sequences described herein can be used to detect UCP3 or DNA encoding UCP3 in a sample. For example, a labeled nucleic acid probe having all or a functional portion of the nucleotide sequence of UCP3 can be used in a method to detect UCP3 in a sample. In one embodiment, the sample is treated to render the nucleic acids in the sample available for hybridization to a nucleic acid probe, which can be DNA or RNA. The resulting treated sample is combined with a labeled nucleic acid probe having all or a portion of the nucleotide sequence of UCP3 , under conditions appropriate for hybridization of complementary sequences to occur. Detection of hybridization of nucleic acids from the sample with the labeled nucleic probe indicates the presence of UCP3 in a sample. The presence of UCP3 mRNA is indicative of UCP3 expression. Such a method can be used, for example, as a screen for normal or abnormal thermogenesis in skeletal muscle or brown adipose tissue.
Alternatively, a method of detecting UCP3 in a sample can be accomplished using an antibody directed against UCP3 or a portion of UCP3. Detection of specific binding to the antibody indicates the presence of UCP3 in the sample (e.g., ELISA) . This could reflect a pathological state associated with UCP3 and, thus, can be used diagnostically . The sample for use in the methods of the present invention includes a suitable sample from, for example, a mammal, particularly a human. For example, the sample can be blood, skeletal muscle or brown adipose tissue.
The UCP3 sequences of the present invention can also be used to generate nonhuman gene knockout animals, such as mice, which lack UCP3 and transgenically overexpress UCP3. For example, such UCP3 gene knockout mice can be generated and used to obtain further insight into the function of UCP3 as well as assess the specificity of UCP3 activators and inhibitors. Also, overexpression of UCP3 (e.g., human UCP3) in transgenic mice can be used as a means of creating a test system for UCP3 activators and inhibitors (e.g., against human UCP3) . In addition, the UCP3 gene can be used to clone the UCP3 promoter/enhancer in order to identify regulators of UCP3 transcription. UCP3 gene knockout animals include animals which completely or partially lack the UCP3 gene and/or UCP3 activity or function.
As described herein, it is likely that UCP3 ;plays a role in controlling protein wasting and production of gluconeogenic precursors by skeletal muscle via transport of one or more metabolites, which indicates that inhibitors of UCP3 can be used as a means of curtailing muscle wasting due to, for example, infection, (e.g., human immunodeficiency virus) cancer, tumor cachexia, muscle diseases (e.g., muscular dystrophy) or as a possible treatment for non- insulin dependent diabetes mellitus (NIDDM) .
Thus the present invention relates to a method of inhibiting (partially, completely) protein catabolism in a mammal (e.g., human) comprising administering to the mammal an effective amount of an inhibitor of UCP3. The invention also relates to a method of enhancing protein catabolism in a mammal comprising administering to the mammal an effective amount of an enhancer UCP3. Also encompassed by the present invention is a method of inhibiting muscle wasting in a mammal comprising administering an effective amount of an enhancer of UCP3 to the mammal .
A number of studies have demonstrated that brown adipose tissue plays an important role in regulating energy balance in rodents (Himms-Hagen, J., Prog. Lipid Res . , 28:67-115 (1989)) . The tissue is highly specialized for stimulated energy expenditure with a rich vascular supply, dense sympathetic innervation, and numerous mitochondria. Importantly, brown adipocytes are further distinguished from other cell types by their expression of all three uncoupling proteins: UCP1, which is expressed exclusively in brown adipocytes, UCP2 , which is expressed widely (Fleury, C, et al . f Nature Genetics , 15:269-272 (1997); Gimeno, R.E., et al . , Diabetes , in press (1997)) and, as demonstrated herein, UCP3 which is expressed selectively and abundantly in brown adipocytes and skeletal muscle. These features make brown fat ideally suited to regulated thermogenesis. 1
In contrast to rodents, brown adipose tissue in large mammals is relatively limited and therefore brown fat may not be a significant regulator of human energy expenditure. A number of studies in humans have implicated skeletal muscle as an important mediator of adaptive thermogenesis in humans (Astrup, A., et al . , Am. J. Physiol . , 248:E507- 515 (1985); Astrup, A., et al . , Am. J". Physiol . , 257:E340- 345 (1989); Zurlo, F., et al., J". Clin . Invest . , 86:1423- 1427. (1990) ; Simonsen, L., et al., Am. J". Physiol . , 263 -.E850-855 (1992); Spraul , M., et al., J. Clin . Invest . , 92:1730-1735 (1993)). Approximately 80% of the variance in resting energy expenditure between individuals can be accounted for by differences in fat-free mass (Ravussin, E., et al . , Am. J". Clin . Nutr. , 55:242S-245S (1992)), much of which is skeletal muscle. Similarly, a perfused forearm study has demonstrated that differences in skeletal muscle energy expenditure account for much of the variation in metabolic rate observed between individuals (Zur]_o, F., et al . , J. Clin . Invest . , 86:1423-1427 (1990)) . Regulated energy expenditure in skeletal muscle is controlled, in large part, by sympathetic stimulation ((Astrup, A., et al . , Am. J. Physiol . , 248:E507-515 (1985); Astrup, A., et al . , Am. J. Physiol . , 257-.E340-345 (1989); Simonsen, L., et al . , Am . J. Physiol . , 263 -.E850-855 (1992); Spraul , M. , et al . , J. Clin . Invest . , 92 : 1730-1735 (1993)) . It is interesting to note that brown fat and skeletal muscle have many features in common: a rich blood supply, a dense sympathetic innervation, and abundant mitochondria. In addition, both tissues express high levels of UCP3 mRNA.
The heart continuously expends large amounts of energy in order to maintain blood circulation. In view of this, it is probably significant that UCP3 is minimally expressed in cardiac tissue. This is especially true given the general tendency for non-contractile muscle-specific genes to be expressed in both striated muscle types (skeletal and cardiac) . Abundant expression of UCP3 in two thermogenic tissues, skeletal muscle and brown fat, and relative lack of expression in other sites such as the heart, demonstrates that UCP3 is an important molecular mediator of adaptive thermogenesis.
Thus, the present invention provides for anti-obesity drug development wherein the UCP3 nucleic acids and protein can be used to identify, for example, enhancers (activators) of UCP3 which can be used to induce uncoupling. /33-adrenergic receptor agonists, which increase UCP1 expression and activity in brown fat are presently under development, but may have limited effects given the paucity of brown fat in humans. UCP2 is another potential target. However, it is expressed in a number of critical organs and tissues and its activation could produce unwanted side effects. Specific activators of UCP3 expression and/or function, on the other hand, selectively increase energy expenditure in skeletal muscle and brown fat, two tissues that have the capacity for adaptive energy expenditure . The present invention is further illustrated by the following examples, which are not intended to be limiting in any way.
EXAMPLE 1 CLONING AND CHARACTERIZATION OF THE UCP3 GENE
Northern Blot Assays ;
Human Multiple Tissue Northern Blots (#7760-1, #7759-1 and ^7767-1) containing approximately 2 μg of polyA RNA per lane were purchased from Clontech Laboratories (Palo Alto, CA) . All hybridizations, membranes washes and membrane strippings were performed according to manufacturer' s specifications. The blots were first hybridized to a hUCP3 probe, washed and exposed to film for 1-18 hours, then stripped, rehybridized to a hUCP2 probe and exposed to film for 18 hours. The hUCP3 probe was a 293 bp fragment corresponding to residues #211-308. The hUCP2 probe was a 1125 bp fragment spanning the entire open reading frame. The specific activities of both hybridization probes were similar. Mouse Northern blots were generated using total RNA isolated from a number of tissues and equal loading of lanes was established using ethidium bromide florescence. The mouse Northern blots were hybridized using the hUCP3 probe described above .
RNase Protection
Total RNA was extracted from adipose tissue the method of Chomczynski and Sacchi (Chomczynski, P. and Sacchi, N. , Anal . Biochem . , 162 : 156 - 159 (1987)) . Skeletal muscle and heart RNA was obtained from Clontech. Aliquots of 1, 3, 5 and 10 μg of adipose tissue and skeletal muscle I?NA and 10 μg aliquot of heart RNA were used for determination of UCP3 and mRNA levels. The Rnase protection assay was performed as previously described (Vidal-Puig, A., et al., J". Clin . Invest . , 97:2553-2561 (1997)). A UCP-3 cDNA fragment was generated by reverse transcriptase-PCR using total RNA from human muscle as follows: two primers (5' GGA CTA CCA CCT GCT CAC TG 3' (SEQ ID NO : 23) and 5' CCC GTA ACA TAT GGA CTT T3 ' (SEQ ID NO: 24)) were designed to amplify 302 bp of the hUCP-3 sequence corresponding to residues #209-308. The PCR product was subcloned into PGMT easy TA cloning vector (Promega Corp., Madison, WI) and linearized for riboprobe synthesis using Spe I . Identity and orientation of the UCP3 probe was confirmed by sequencing. The antisense [32P] -labeled UCP3 template was synthesized using T& RNA polymerase. A human cyclin riboprobe was used as an internal control (Ambion, Inc., Austin, TX) .
Results
As described herein, a third uncoupling homologue designated UCP3 has been cloned. It is distinguished from UCP1 and UCP2 by its selective expression in skeletal muscle and brown adipose tissue, two important sites for regulated energy expenditure in humans (Astrup, A., et al., Am. J. Physiol . , 248 -. E501-515 (1985); Astrup, A., et al., Am. J. Physiol . , 257:E340-345 (1989); Zurlo, F., et al . , J. Clin . Invest . , 86:1423-1427 (1990); Simonsen, L., et al., Am . J. Physiol . , 263:E850-855 (1992); Spraul , M., et al . , J". Clin . Invest . , 92:1730-1735 (1993)) and rodents (Himms- Hagen, J. , Prog. Lipid Res . , 28:67-115 (1989)). At the amino acid level, hUCP3 is 71% identical to hUCP2 and 57% identical to hUCPl . Because UCP3 is abundantly and selectively expressed in skeletal muscle and brown adipose tissue, UCP3 is likely to be an important mediator of regulated thermogenesis in humans. Since UCP3 is minimally expressed in heart and other critical organs, it ,is a promising target for anti-obesity drug development aimed at increasing thermogenesis. The expressed sequence tag (EST) database (http://www.ncbi.nlm.gov) was screened for sequences homologous to UCP1. One human EST, deposited by the Washington University, St. Louis - Merck & Co. EST project, was identified which was similar but not identical to hUCPl and hUCP2 (accession no. AA192136, IMAGE clone no. 628529) . This clone originated from a human skeletal muscle cDNA library (#937209, Stratagene, La Jolla, CA) . The bacterial stock for clone 628529 was obtained from Genome Systems (St. Louis, MI) and was found to contain an insert of approximately 1.3kb, which included the C- terminal third of the open reading frame. The coding region within clone 628529 was fully resequenced. Full-length cDNA sequences were generated using the Marathon cDNA Amplification Kit, human skeletal muscle Marathon-Ready cDNA (both from Clontech Laboratories, Palo Alto, CA) and an antisense primer (5' -TTC ACC ACG TCC ACC CGG GGG GAT GCC ACC-3') (SEQ ID NO: 25) corresponding to the coding sequence presumed to represent hUCP3. UCP3 cDNA sequence contains a 5' untranslated region of at least 183 bases, an open reading from of 936 bases, a 3' untranslated region of approximately 1.1 kb, a polyadenylation signal and a polyA tail (Figures 1A-1C) . The UCP3 mRNA transcript is predicted to be equal to or greater than 2.2 kb . UCP3 protein, as deduced from the open reading frame, is composed of 312 amino acids and is estimated to have a molecular weight of approximately 34 kD (Figure 3) . As shown in Figure 3, at the amino acid level, hUCP3 is 71% identical to hUCP2 and 57% identical to hUCPl; and hUCP2 is 59% identical to hUCPl . Many of the nonidentical residues in hUCP3 are conservative substitutions which in most cases correspond to residues found in either mUCP2 (Fleury, C, et al., Nature Genetics, 15:269-272 (1997); Gimeno, R.E., et al . , Diabetes, 46:900- 906 (1997)) or in UCP1 from various species (Klaus, S., et al . , Int . J. Biochem . , 23:791-801 (1991)). The data, based upon the high degree of homology between UCP1, UCP2 and UCP3 , demonstrates that UCP3 uncouples mitochondrial respiration. In order to establish the tissue distribution of UCP3 in humans, Northern blot analyses were performed. UCP3 was abundantly expressed in skeletal muscle, generating a dominant mRNA transcript of approximately 2.4 kb. With longer exposure (18 hours), a much weaker UCP3 signal (2.4 kb) was detected in a large number of other tissues and organs. The longer exposures (18 hours) of the human UCP3 Northern blots also revealed the presence of a smaller mRNA transcript which had a similar size (approximately 1.6 kb) . Of note, the 294 bp hUCP3 probe employed was 75% identical to hUCP2. Rehybridization of the same blots with hUCP2 confirmed that this smaller 1.6 kb signal was UCP2. The UCP2 signal, as previously reported (Fleury, C, et al . , Nature Genetics, 15:269-272 (1997); Gimeno, R.E., et al., Diabetes, 446:900-906 (1997)) was widely expressed. It was being most abundant in spleen, thymus, bone marrow, trachea, and lymph node, and somewhat less abundant in skeletal muscle as well as a number of other tissues. UCP2 was also abundantly expressed in white adipose tissue as reported Gimeno, R.E., et al . , Diabetes, 446:900-906 (1997)) . A comparison of hybridization signals for UCP2 and UCP3 suggests that UCP3 may be the dominant uncoupling protein transcript in human skeletal muscle.
A sensitive RNase protection assay was used to assess UCP3 mRNA expression in heart, skeletal muscle and white adipose tissue. No UCP3 signal could be detected in white adipose tissue. In heart, a very weak UCP3 signal was detected. The signal in heart was less than 1% of that detected in skeletal muscle.
In mice, abundant UCP3 expression was detected in skeletal muscle and brown fat. As with humans, little or o UCP3 expression was detected in other mouse tissues such as white adipose tissue, brain, kidney, liver and colon. s was observed in the human mRNA studies, a smaller transcript was detected in mouse samples as well. This smaller transcript most likely represents mUCP2 given that it was most abundant in white adipose tissue, a site of high-level UCP2 expression (Fleury, C, et al . , Nature Genetics, 15:269-272 (1997); Gimeno, R.E., et al . , Diabetes, in press (1997) ) . Of note, the hUCP3 probe is 73% identical to mUCP2.
Figure 4 is a hydrophilicity plot of human UCP2 and human UCP3 showing the hydrophobicity of protein across linear sequence.
EXAMPLE 2 Discovery of an Alternative Form of UCP3 , Designated UCP3 -short form (UCP3sh)
As discussed above, the genomic organization of the human UCP3 gene has been defined. In addition, it has been determined that the UCP3 gene generates two mRNA transcripts, UCP3 and UCP3-short form (UCP3sh) . The nucleotide sequence of UCP3sh mRNA is shown in Figures 2A-
2B. The UCP3sh transcript encodes a shortened version of the UCP3 protein. As shown in Figure 8, the UCP3sh transcript results when a polyadenylation/transcription termination signal (AATAAA) (SEQ ID NO: 26) located within intron 6 terminates transcription (see Figure 3) . However, this AATAAA (SEQ ID NO: 26) seems to be only partially effective in terminating transcription. When it does succeed in terminating transcription, the UCP3sh transcript is generated. When it fails to terminate transcription, transcription continues on through exon 7 and terminates at the exon 7 7AATAAA (SEQ ID NO: 26) signal. Splicing between exon 6 and exon 7 then occurs to generate the UCP3 transcript . As shown is Figure 3, UCP3sh differs from UCP3 only by the absence of the last 37 amino acids. It is reasonable to expect that this is significant, since the region missing in UCP3sh is highly homologous to a region in UCP1 which has been implicated in mediating inhibition of uncoupling activity by purine nucleotides (Murdza-Inglis, D.L., et al . , J Biol Chem . 269:7435-7438 (1994)), As a result, it is reasonable to expect that UCP3sh is more active as an uncoupler than UCP3. Using a quantitative RNase protection assay similar to that described in Example 1, it was determined that UCP3sh mRNA, like UCP3 mRNA is extremely abundant in human skeletal muscle. In normal individuals, the leve.1 of UCP3sh mRNA is skeletal muscle is equal to or greater that the level of UCP3 mRNA. Preliminary studies have indicated that UCP3sh mRNA levels are reduced in obese individuals compared to lean individual. In contrast, UCP3 mRNA levels seem to be unchanged in obese individuals. These preliminary findings raise the possibility that UCP3sh is the more important UCP3 protein for body weight regulation.
EXAMPLE 3 Cloning of mouse UCP3 gene
Using the human UCP3 gene, the mouse UCP3 gene was isolated using methods similar to those described in Example 1. The mouse UCP3 nucleotide sequence (SEQ ID NO: 7) is shown in Figures 5A-5C, and the mouse UPC3 amino acid sequence is shown in Figure 6. Comparisions of mUCP3 versus mUCPl and mUP2 and human UCP3 are shown in Figure 7.
EXAMPLE 4 Monitoring of JC-1 fluorescence in living cells
An assay which utilizes fibroblast-like cells lines expressing recombinant human UCP3 , and a fluorescent dye (e.g., JC-1) makes it possible to rapidly assess mitochondrial membrane potential (ΔΨ) in living cells (Smiley, S.T., et al . , Proc . Natl . Acad . Sci . USA, 88:3671- 3675 (1991); Reers , M., et al . , Methods in Enzymology, 260 : 406-4:11 (1995)). Any drug which increases UCP3 activity is expected to reduce Δ , and therefore, reduce "red" -fluorescence of JC-1. By comparing effects of test compounds on fluorescence in a cell line expressing UCP3 with a control (e.g., cells which do not express UCP3 ; cells which express UCP3 in the absence of the test compound) , it is possible to identify specific activators and inhibitors of UCP3. The cells can be grown in 96 well plates, and the plates can be read directly in a fluorometer designed to handle 96 well plates, it is possible to perform this assay in a high-throughput fashion.
Recombinant cells expressing hUCP3 and cells not expressing UCP3 are grown in 96 well plates. On the day of analysis, the plates are rinsed and JC-1 dye is added to all wells plus or minus test compounds. Later, plates are washed and then, in the presence of the test compound, fluorescence is determined in a fluorometer. Decrease of fluorescence in the presence of the test compound, indicates a decrease of mitochondrial ΔΨ (and vice versa for cases where fluorescence is increased) . That is, increase of fluorescence in the presence of the test compound indicates an increase of mitochondrial ΔΨ. If decrease in fluorescence is observed in UCP3 expressing cells but not in control cells, then the test compound is an activator of UCP3. If an increase in fluorescence is observed in UCP3 expressing cells, but not in control cells, then the test compound is an inhibitor of JCP3.
Any dye can be used in the high-throughout screen, such as JC-1, rhodamine 123, DiOCc[3], or tetramethylhydrosamine . In a particular embodiment, JC-1 dye, a delocalized lipophilic cation (DLC) , can be used. The distinguishing feature of DLCs is that they are positively charged, yet lipophilic. The lipophilic feature allows then to traverse membranes and the positive charge causes then to accumulate within mitochondria (negatively charged on the inside) . This accumulation is proportional to ΔΨ, the membrane electrical potential across the inner mitochondrial membrane, and follows the Nernst Equation shown below. The mitochondrial ΔΨ results from the protein electrochemical gradient across the inner mitochondrial membrane and represents the electrical portion of this gradient (ΔpH represents the chemical portion of the gradient) .
ΔΨ = -60 log Fιn/Fout F = concentration of DLC
Thus, a ΔΨ of -60 mV corresponds to a DLC in/out ratio of 10 to 1, and a ΔΨ of -120 mV, corresponds to a DLC in/out ratio of 100 to 1. Thus, a change in ΔΨ is amplified by a change in Fjn/Fou[. Of note, ΔΨ for most mitochondrial range between -50 mV and -160 mV.
Protonophore uncouplers such as DNP (dinitrophenol) , CCCP (carbonyl cyanide m-chlorophenyllhydrazone) , decrease ΔΨ and, as a result, markedly decrease the accumulation of JC-1. Any drug which increases UCP activity is expected to have the same effect as DNP, CCCP or FCCP .
JC-1 has fluorescent features which makes it extremely useful as a monitor of mitochondrial ΔΨ. Many dyes aggregate at high concentrations and this reduces fluorescence greatly (for example, rhodamine 123). Aggregates of JC-1 fluoresce intensely, and at higher wavelength than JC-1 monomers. Specifically, monomers emit at 527 nM (green) while J-aggregates emit at 590 nM (red) . Thus, high concentrations of JC-1 accumulate in mitochondria permitting the formation of aggregates. The accumulation of JC-1 and therefore the formation of aggregates is proportional to mitochondrial ΔΨ. Aggregates do not form in other cellular locations due to insufficient accumulation of JC-1. Thus, detection of aggregates (as measured by fluorescence at 590 nM) is a sensitive indicator of mitochondrial ΔΨ.
CX-1 cells were incubated with JC-1 (lOug/ml) with or without the uncoupler, FCCP, for 10 minutes, washed 3 times, trypsinized and then transferred as a cell suspension to a 1 cm quartz cuvette, in which fluorescence was monitored using a Kontron SFM25 fluorescent spectrophotometer .
Figure imgf000040_0001
The data shows that JC-1 aggregate fluorescence can be monitored in living cells and that an uncoupler (FCCP) which is expected to have the same effect as a UCP activator markedly lowers "red" fluorescence. Fluorescence can also be monitored using a FACScan flow cytometer or in a single cell using fluorescence microscopy.
EXAMPLE 5 UCP3 GENE EXPRESSION: Tissue Distribution and Physiologic Regulation
Tissue Distribution - In humans, UCP3 is expressed abundantly and preferentially in skeletal muscle, In rats, UCP3 is expressed abundantly in skeletal muscle and brown fat.
Starvation - UCP3 was dramatically increased by starvation in mice and rats (-5-10 fold) . In humans, it has been shown that 5 days of food restriction causes a 2.5-fold increase in UCP3 mRNA expression. Also, it was found that human UCP3 mRNA is significantly upregulated when transgenic mice bearing a human UCP3 PI clone are starved. Thus, it is likely that humans, like rodents, increase UCP3 gene expression with starvation.
Role of FFAs - Recently, it was shown that treatment of fed rats with Intralipid plus heparin (which produced an increase in free fatty acids (FFAs) from 0.26 to 2.04 M) caused a 3-fold increase in UCP3 (Weigle D.S., Diabetics, 47:298-302 (1998)). Based upon this observation, it was suggested that the increase in FFAs with starvation was responsible for the effects of starvation on UCP3; mRNA levels. It was speculated that "this induction of UCP3 may be linked to the utilization of free fatty acids as a fuel". As discussed below however, it is unlikely that this hypothesis is true.
Starvation plus Nicotinic Acid - 1 day fasted rats were treated with saline or nicotinic acid for 6 hours and the effects on UCP3 gene expression were assessed.
Starvation increases lipolysis in adipose tissue, causing a marked increase in blood levels of FFAs. The increase in FFAs is thought to promote conservation of protein in skeletal muscle (when lipid fuels are abundant, the requirement for gluconeogenesis from muscle protein is reduced). Nicotinic acid inhibits lipolysis, restores FFA levels to fed values, and stimulates protein catabolism in skeletal muscle (Lowell and Goodman, Diabetics, 36:14-19 (1987) ) . The experiment described herein shows that nicotinic acid treatment of fasted animals returned FFA levels to fed values, but increased UCP3 mRNA to .levels 2- fold higher than those observed in saline treated fasted controls. This observation shows that the starvation- induced rise in FFAs is not responsible for the effects of starvation on UCP3 mRNA levels. Also, it shows that UCP3 is not linked to the utilization of FFAs as fuel. Instead, based upon this finding it is reasonable to expect that UCP3 is linked to protein catabolism in skeletal muscle. Streptozotocin Diabetes - Fourteen days of streptozotocin diabetes in rats produced a very large increase in UCP3 mRNA levels. This rise in UCP3 was reversed with one day of insulin treatment. Streptozotocin diabetes is associated with significant protein catabolism in skeletal muscle. Endotoxin - Endotoxin treatment of rats and mice resulted in a very large increase in UCP3 mRNA levels in skeletal muscle, but not in other tissues. Endotoxin is a well known stimulator of protein catabolism in skeletal muscle . Dexamethasone - High dose dexamethasone treatment markedly stimulated UCP3 mRNA levels in skeletal muscle, but not in other tissues. Dexamethasone is also a well known stimulator of protein catabolism in skeletal muscle. Thyroid Hormone - High dose thyroid treatment in rats stimulated UCP3 mRNA levels. Thyroid hormones seemed to have little or no effect in mice. Thyroid hormone is also a well known stimulator of protein catabolism in skeletal muscle . ob/ob and db/db mice: fa/fa rats - These genetically obese rodents were generated and shown to have markedly increased UCP3 mRNA levels in skeletal muscle. It is likely that increased UCP3 mRNA levels in ob/ob mice contributed to elevated production of gluconeogenic precursors by muscle, thereby promoting non-insulin dependent diabetes mellitus (NIDDM) in these animals.
It is interesting to note that nearly all pqsitive regulators of UCP3 gene expression (starvation, nicotinic acid treatment during starvation, streptozotocin diabetes, endotoxin, dexamethasone and thyroid hormone) are associated with catabolism of skeletal muscle protein (see Mitch and Goldberg, NEJM, 335:1897-1905 (1996)) . The only exceptions to this are genetically obese rodents (however, these animals do have decreased muscle mass) . From another perspective, it is also true that all catabolic states tested to date are associated with increased UCP3 expression.
Given that increased UCP3 gene expressions is linked to states of augmented skeletal muscle protein catabolism, it is likely that UCP3 plays an important role in regulating skeletal muscle protein catabolism (conversion of muscle protein to gluconeogenic precursors) . Possible mechanisms by which UCP3 plays a role are the following:
a) UCP3 is a mitochondrial carrier which transports biosynthetic metabolites in and out of mitochondria during skeletal muscle protein catabolism (i.e., conversion of aspartate, glutamate, valine, isoleucine and leucine to gluconeogenic precursors alanine and glutamine) . b) UCP3 is the aspartate/glutamate carrier and is rate limiting for operation of the aspartate/malate shuttle (transfers cytosolic NADH into the mitochondria) . Increased operation of this shuttle would reduce the cytosolic NADH/NAD ratio. It has been suggested that the cytosolic NADH/NAD ratio regulates muscle protein catabolism. c) UCP3 is indeed a genuine uncoupling protein and increased UCP3 activity in catabolic states oxidizes the whole cell redox state (NADH/NAD ratio) , thereby stimulating protein catabolism and amino acid metabolism.
Skeletal Muscle Metabolism During Starvation (and other catabolic states) . During starvation, muscle mobilizes actin and myosin protein and releases gluconeogenic precursors into the blood (primarily alanine and glutamine) . This response is critical for survival. In the absence of gluconeogenesis from muscle protein, blood glucose levels would fall during starvation and brain dysfunction would occur.
The amino acids released from muscle protein are significantly metabolized inside the myocytes prior to their release into the bloodstream. Alanine and glutamine represent approximately 12% amino acids in muscle protein but together represent > 50% of amino acids released by muscle during starvation. Thus, much of the alanine and glutamine released must be synthesized. In contrast, aspartate, asparginine, glutamate, leucine, isoleucine and valine represent > 30% of amino acids in muscle protein but are released in only small amounts during starvation. These amino acids are interconverted to alanine and glutamine by muscle. Other amino acids such as glycine, cysteine, serine, threonine, methionine, proline, lysine, arginine, histidine, phenylalanine, tyrosine and tryptophan represents approximately 50% of muscle protein and are released either unchanged or as deaminated α-ketoacids .
Alanine is generated by the transamination of pyruvate. The pyruvate (i.e., carbon) for alanine synthesis come from glycolysis while the nitrogen originates from aspartate, asparginine, glutamate, leucine, isoleucine and valine. The released alanine is taken up by the liver and used to synthesize glucose. The glucose is then returned to the muscle and is metabolized into pyruvate, thus completing the glucose-alanine cycle. It is important to note that no new glucose is synthesized by this process, the carbons are simply recycled. Thus, the glucose-alanine cycle functions to conserve carbohydrate, but does not generate new carbohydrate. The cycle also functions to transfer NH2 from amino acids with are metabolized (aspartate, asparginine, glutamate, leucine, isoleucine and valine) to the liver where it can be detoxified via the urea cycle.
Because certain tissues are oxidizing glucose to C02 (i.e., the brain), new glucose must be synthesized during starvation. This new glucose is synthesized from glutamine, which is released by muscle. The carbon backbone for glutamine comes from aspartate, asparginine, glutamate, isoleucine and valine, while the nitrogen comes from these same amino acids plus leucine. The leucine carbon backbone is completely oxidized to C02 by muscle. The glutamine released by muscle is taken up by the kidney and intestines, where a complex pathway is initiated culminating in the synthesis of glucose. Glutamine synthetase is the enzyme which converts glutamate to glutamine, the final step in glutamine synthesis. It is interesting to note that glutamine synthetase gene expression in muscle, like UCP3 gene expression, is induced by starvation, streptozotocin diabetes, endotoxin treatment and dexamethasone. It is also interesting to note, as was seen with UCP3 , that these effects on glutamine synthetase gene expression are observed in skeletal muscle, but not in other tissues.
Significant mitochondrial metabolism must occur in order for aspartate, asparginine, glutamate, isoleucine, valine and leucine to be interconverted to alanine and glutamate. This is because important enzymes involved in the interconversion are located within the mitochondrial matrix. One example is branched chain α-ketoacid dehydrogenase (BCKADH) , an enzyme which initiates the oxidation of leucine, isoleucine and valine. Of .interest, BCKADH activity in muscle increases significantly during starvation and streptozotocin diabetes. Thus, metabolites must flux in and out of mitochondria for muscle to release alanine and glutamine during catabolic states.
EQUIVALENTS
Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are intended to be encompassed by the following claims.
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(B) TELEFAX: (781) 861-9540 (2) INFORMATION FOR SEQ ID NO : 1 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1220 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:l:
AGGAGGGGCC ATCCAATCCC TGCTGCCACC TCCTGGGATG GAGCCCTAGG GAGCCCCTGT 60
GCTGCCCCTG CCGTGGCAGG ACTCACAGCC CCACCGCTGC ACTGAAGCCC AGGGCTGTGG 120
AGCAGCCTCT CTCCTTGGAC CTCCTCTGGG CCCTAAAGGG ACTGGGCAGA GCCTTCCAGG 180
ACTATGGTTG GACTGAAGCC TTCAGACGTC CCTCCCACCA TGGCTGTGAA GTTCCTGGGG 240
GCAGGCACAG CAGCCTGTTT TGCTGAACTC GTTACCTTTC CACTGGACAC AGCCAAGGTC 300
CGCCTGCAGA TCCAGGGGGA GAACCAGGCG GTCCAGACGG CCCGGCTCGT GCAGTACCGT 360
GGCGTGCTGG GCACCATCCT GACCATGGTG CGGACTGAGG GTCCCTGCAG CCCCTACAAT 420
GGGCTGGTGG CCGGCCTGCA GCGCCAGATG AGCTTCGCCT CCATCCGCAT CGGCCTCTAT 480
GACTCCGTCA AGCAGGTGTA CACCCCCAAA GGCGCGGACA ACTCCAGCCT CACTACCCGG 540
ATTTTGGCCG GCTGCACCAC AGGAGCCATG GCGGTGACCT GTGCCCAGCC CACAGATGTG 600
GTGAAGGTCC GATTTCAGGC CAGCATACAC CTCGGGCCAT CCAGGAGCGA CAGAAAATAC 660
AGCGGGACTA TGGACGCCTA CAGAACCATC GCCAGGGAGG AAGGAGTCAG GGGCCTGTGG 720
AAAGGAACTT TGCCCAACAT CATGAGGAAT GCTATCGTCA ACTGTGCTGA GGTGGTGACC 780
TACGACATCC TCAAGGAGAA GCTGCTGGAC TACCACCTGC TCACTGACAA CTTCCCCTGC 840
CACTTTGTCT CTGCCTTTGG AGCCGGCTTC TGTGCCACAG TGGTGGCCTC CCCGGTGGAC 900
GTGGTGAAGA CCCGGTATAT GAACTCACCT CCAGGCCAGT ACTTCAGCCC CCTCGACTGT 960
ATGATAAAGA TGGTGGCCCA GGAGGGCCCC ACAGCCTTCT ACAAGGGATT TACACCCTCC 1020
TTTTTGCGTT TGGGATCCTG GAACGTGGTG ATGTTCGTAA CCTATGAGCA GCTGAAACGG 1080
GCCCTGATGA AAGTCCAGAT GTTACGGGAA TCACCGTTTT GAACAAGACA AGAAGGCCAC 1140
TGGTAGCTAA CGTGTCCGAA ACCAGTTAAG AATGGAAGAA AACGGTGCAT CCACGCACAC 1200
ATGGACACAG ACCCACACAT 1220 (2) INFORMATION FOR SEQ ID NO : 2 :
(i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 1034 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 2 :
GAGGGGCCAT CCAATCCCTG CTGCCACCTC CTGGGATGGA GCCCTAGGGA GCCCCTGTGC 60
TGCCCCTGCC GTGGCAGGAC TCACAGCCCC ACCGCTGCCT GAAGCCCAGG GCTGTGGAGC 120
AGCCTCTCTC CTTGGACCTC CTCTCGGCCC TAAAGGGACT GGGCAGAGCC TTCCAGGACT 180
ATGGTTGGAC TGAAGCCTTC AGACGTGCCT CCCACCATGG CTGTGAAGTT CCTGGGGGCA 240
GGCACAGCAG CCTGTTTTGC TGAACTCGTT ACCTTTCCAC TGGACACAGC CAAGGTCCGC 300
CTGCAGATCC AGGGGGAGAA CCAGGCGGTC CAGACGGCCC GGCTCGTGCA GTACCGTGGC 360
GTGCTGGGCA CCATCCTGAC CATGGTGCGG ACTGAGGGTC CCTGCAGCCC CTACAATGGG 420
CTGGTGGCCG GCCTGCAGCG CCAGATGAGC TTCGCCTCCA TCCGCATCGG CCTCTATGAC 480
TCCGTCAAGC AGGTGTACAC CCCCAAAGGC GCGGACAACT TCCAGCCTCA CTACCCGGAT 540
TTTGGCCGGC TGCACCACAG GAGCCATGGC GGTGACCTGT GCCCAGCCCA CAGATGTGGT 600
GAAGGTCCGA TTTCAGGCCA GCATACACCT CGGGCCATCC AGGACCGACA GAAAATACAG 660
CGGGACTATG GACGCCTACA GAACCATCGC CAGGGAGGAA GGAGTCAGGG GCCTGTGGAA 720
AGGAACTTTG CCCAACATCA TGAGGAATGC TATCGTCAAC TGTGCTGAGG TGGTGACCTA 780
CGACATCCTC AAGGAGAAGC TGCTGGACTA CCACCTGCTC ACTGACAACT TCCCCTGCCA 840
CTTTGTCTCT GCCTTTGGAG CCGGCTTCTG TGCCACAGTG GTGGCCTCCC CGGTGGACGT 900
GGTGAAGACC CGGTATATGA ACTCACCTCC AGGCCAGTAC TTCAGCCCCC TCGACTGTAT 960
GATAAAGATG GTGGCCCAGG AGGGCCCCAC AGCCTTCTAC AAGGGGTGAG CCTCCTCCTG 1020
CCTCCAGCAC TCCC 1034 ( 2 ) INFORMATION FOR SEQ ID NO : 3 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 312 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 3 : Met Val Gly Leu Lys Pro Ser Asp Val Pro Pro Thr Met Ala Val Lys 1 5 10 15
Phe Leu Gly Ala Gly Thr Ala Ala Cys Phe Ala Glu Leu Val Thr Phe 20 25 30
Pro Leu Asp Thr Ala Lys Val Arg Leu Gin lie Gin Gly Glu Asn Gin 35 40 45
Ala Val Gin Thr Ala Arg Leu Val Gin Tyr Arg Gly Val Leu Gly Thr 50 55 60 lie Leu Thr Met Val Arg Thr Glu Gly Pro Cys Ser Pro Tyr Asn Gly 65 70 75 80
Leu Val Ala Gly Leu Gin Arg Gin Met Ser Phe Ala Ser lie Arg lie 85 90 95
Gly Leu Tyr Asp Ser Val Lys Gin Val Tyr Thr Pro Lys Gly Ala Asp 100 105 110
Asn Ser Ser Leu Thr Thr Arg lie Leu Ala Gly Cys Thr Thr Gly Ala 115 120 125
Met Ala Val Thr Cys Ala Gin Pro Thr Asp Val Val Lys Val Arg Phe 130 135 140
Gin Ala Ser lie His Leu Gly Pro Ser Arg Ser Asp Arg Lys Tyr Ser 145 150 155 160
Gly Thr Met Asp Ala Tyr Arg Thr lie Ala Arg Glu Glu Gly Val Arg 165 170 175
Gly Leu Trp Lys Gly Thr Leu Pro Asn lie Met Arg Asn Ala lie Val 180 185 190
Asn Cys Ala Glu Val Val Thr Tyr Asp lie Leu Lys Glu Lys Leu Leu 195 200 205
Asp Tyr His Leu Leu Thr Asp Asn Phe Pro Cys His Phe Val Ser Ala 210 215 220
Phe Gly Ala Gly Phe Cys Ala Thr Val Val Ala Ser Pro Val Asp Val 225 230 235 240
Val Lys Thr Arg Tyr Met Asn Ser Pro Pro Gly Gin Tyr Phe Ser Pro 245 250 255
Leu Asp Cys Met lie Lys Met Val Ala Gin Glu Gly Pro Thr Ala Phe 260 265 270
Tyr Lys Gly Phe Thr Pro Ser Phe Leu Arg Leu Gly Ser Trp Asn Val 275 280 285
Val Met Phe Val Thr Tyr Glu Gin Leu Lys Arg Ala Leu Met Lys Val 290 295 300
Gin Met Leu Arg Glu Ser Pro Phe 305 310
(2) INFORMATION FOR SEQ ID NO: 4: (i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 275 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 4 :
Met Val Gly Leu Lys Pro Ser Asp Val Pro Pro Thr Met Ala Val Lys 1 5 10 15
Phe Leu Gly Ala Gly Thr Ala Ala Cys Phe Ala Glu Leu Val Thr Phe 20 25 30
Pro Leu Asp Thr Ala Lys Val Arg Leu Gin lie Gin Gly Glu Asn Gin 35 40 45
Ala Val Gin Thr Ala Arg Leu Val Gin Tyr Arg Gly Val Leu Gly Thr 50 55 60 lie Leu Thr Met Val Arg Thr Glu Gly Pro Cys Ser Pro Tyr Asn Gly 65 70 75 80
Leu Val Ala Gly Leu Gin Arg Gin Met Ser Phe Ala Ser lie Arg lie 85 90 95
Gly Leu Tyr Asp Ser Val Lys Gin Val Tyr Thr Pro Lys Gly Ala Asp 100 105 110
Asn Ser Ser Leu Thr Thr Arg lie Leu Ala Gly Cys Thr Thr Gly Ala 115 120 125
Met Ala Val Thr Cys Ala Gin Pro Thr Asp Val Val Lys Val Arg Phe 130 135 140
Gin Ala Ser lie His Leu Gly Pro Ser Arg Ser Asp Arg Lys Tyr Ser 145 150 155 160
Gly Thr Met Asp Ala Tyr Arg Thr lie Ala Arg Glu Glu Gly Val Arg 165 170 175
Gly Leu Trp Lys Gly Thr Leu Pro Asn lie Met Arg Asn Ala lie Val 180 185 190
Asn Cys Ala Glu Val Val Thr Tyr Asp lie Leu Lys Glu Lys Leu Leu 195 200 205
Asp Tyr His Leu Leu Thr Asp Asn Phe Pro Cys His Phe Val Ser Ala 210 215 220
Phe Gly Ala Gly Phe Cys Ala Thr Val Val Ala Ser Pro Val Asp Val 225 230 235 240
Val Lys Thr Arg Tyr Met Asn Ser Pro Pro Gly Gin Tyr Phe Ser Pro 245 250 255 Leu Asp Cys Met lie Lys Met Val Ala Gin Glu Gly Pro Thr Ala Phe 260 265 270
Tyr Lys Gly 275 NFORMATION FOR SEQ ID NO : 5 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 307 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 5:
Met Gly Gly Leu Thr Ala Ser Asp Val His Pro Thr Leu Gly Val Gin 1 5 10 15
Leu Phe Ser Ala Gly lie Ala Ala Cys Leu Ala Asp Val lie Thr Phe 20 25 30
Pro Leu Asp Thr Ala Lys Val Arg Leu Gin Val Gin Gly Glu Cys Pro 35 40 45
Thr Ser Ser Val He Arg Tyr Lys Gly Val Leu Gly Thr He Thr Ala 50 55 60
Val Val Lys Thr Glu Gly Arg Met Lys Leu Tyr Ser Gly Leu Pro Ala 65 70 75 80
Gly Leu Gin Arg Gin He Ser Ser Ala Ser Leu Arg He Gly Leu Tyr 85 90 95
Asp Thr Val Gin Glu Phe Leu Thr Ala Gly Lys Glu Thr Ala Pro Ser 100 105 110
Leu Gly Ser Lys He Leu Ala Gly Leu Thr Thr Gly Gly Val Ala Val 115 120 125
Phe He Gly Gin Pro Thr Glu Val Val Lys Val Arg Leu Gin Ala Gin 130 135 140
Ser His Leu His Gly He Lys Pro Arg Tyr Thr Gly Thr Tyr Asn Ala 145 150 155 160
Tyr Arg He He Ala Thr Thr Glu Gly Leu Thr Gly Leu Trp Lys Gly 165 170 175
Thr Thr Pro Asn Leu Met Arg Ser Val He He Asn Cys Thr Glu Leu 180 185 190 ,
Val Thr Tyr Asp Leu Met Lys Glu Ala Phe Val Lys Asn Asn He Leu 195 200 205
Ala Asp Asp Val Pro Cys His Leu Val Ser Ala Leu He Ala Gly Phe 210 215 220 Cys Ala Thr Ala Met Ser Ser Pro Val Asp Val Val Lys Thr Arg Phe 225 230 235 240
He Asn Ser Pro Pro Gly Gin Tyr Lys Ser Val Pro Asn Cys Ala Met 245 250 255
Lys Val Phe Thr Asn Glu Gly Pro Thr Ala Phe Phe Lys Gly Leu Val 260 265 270
Pro Ser Phe Leu Arg Leu Gly Ser Trp Asn Val He Met Phe Val Cys 275 280 285
Phe Glu Gin Leu Lys Arg Glu Leu Ser Lys Ser Arg Gin Thr Met Asp 290 295 300
Cys Ala Thr 305
(2) INFORMATION FOR SEQ ID NO : 6 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 308 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
( i) SEQUENCE DESCRIPTION: SEQ ID NO: 6:
Met Val Gly Phe Lys Ala Thr Asp Val Pro Pro Thr Ala Thr Val Lys 1 5 10 15
Leu Phe Gly Ala Gly Thr Ala Ala Cys He Ala Asp Leu He Thr Phe 20 25 30
Pro Leu Asp Thr Ala Lys Val Arg Leu Gin He Gin Gly Glu Ser Gin 35 40 45
Gly Pro Val Arg Ala Thr Val Ser Ala Gin Tyr Arg Gly Val Met Gly 50 55 60
Thr He Leu Thr Met Val Arg Thr Glu Gly Pro Arg Ser Leu Tyr Asn 65 70 75 80
Cys Leu Val Ala Gly Leu Gin Arg Gin Met Ser Phe Ala Ser Val Arg 85 90 95
He Gly Leu Tyr Asp Ser Val Lys Gin Phe Tyr Thr Lys Gly Ser Glu 100 105 110
His Ala Ser He Gly Ser Arg Leu Leu Ala Gly Ser Thr Thr Gly Ala 115 120 125
Leu Ala Val Ala Val Ala Gin Pro Thr Asp Val Val Lys Val Arg Phe 130 135 140
Gin Ala Gin Arg Ala Gly Gly Gly Arg Arg Tyr Gin Ser Thr Val Asn 145 150 155 160 Ala Tyr Lys Thr He Ala Arg Glu Glu Gly Phe Arg Gly Leu Trp Lys 165 170 175
Gly Thr Ser Pro Asn Val Ala Arg Asn Ala He Val Asn Cys Ala Glu 180 185 190
Leu Val Thr Tyr Asp Leu He Lys Asp Ala Leu Leu Lys Ala Asn Leu 195 200 205
Met Thr Asp Asp Leu Pro Cys His Phe Thr Ser Ala Phe Gly Ala Gly 210 215 220
Phe Cys Thr Thr Val He Ala Ser Pro Val Asp Val Val Lys Thr Arg 225 230 235 240
Tyr Met Asn Ser Ala Leu Gly Gin Tyr Ser Ser Ala Gly His Cys Ala 245 250 255
Leu Thr Met Leu Gin Lys Glu Gly Pro Arg Ala Phe Tyr Lys Gly Phe 260 265 270
Met Pro Ser Phe Leu Arg Leu Gly Ser Trp Asn Val Val Met Phe Val 275 280 285
Thr Tyr Glu Gin Leu Lys Arg Ala Leu Met Ala Ala Cys Thr Ser Arg 290 295 300
Glu Ala Pro Phe 305
(2) INFORMATION FOR SEQ ID NO : 7 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 1204 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:7:
GAGACAACAG TGAATGGTGA GGCCCGGCCG TCAGATCCTG CTGCTACCTA ATGGAGTGGA 60
GCCTTAGGGT GGCCCTGCAC TACCCAACCT TGGCTAGACG CACAGCTTCC TCCCTGAACT 120
GAAGCAAAAG ATTGCCAGGC AAGCTCTCTC CTCGGACCTC CATAGGCAGC AAAGGAACCA 180
GGCCCATTCC CCGGGACCAT GGTTGGACTT CAGCCCTCCG AAGTGCCTCC CACAACGGTT 240
GTGAAGTTCC TGGGGGCCGG CACTGCGGCC TGTTTTGCGG ACCTCCTCAC TTTTCCCCTG 300
GACACCGCCA AGGTCCGTCT GCAGATCCAA GGGGAGAACC CAGGGGCTCA GAGCGTGCAG 360
TACCGCGGTG TGCTGGGTAC CATCCTGACT ATGGTGCGCA CAGAGGGTCC CCGCAGCCCC 420
TACAGCGGAC TGGTCGCTGG CCTGCACCGC CAGATGAGTT TTGCCTCCAT TCGAATTGGC 480
CTCTACGACT CTGTCAAGCA GTTCTACACC CCCAAGGGAG CGGACCACTC CAGCGTCGCC 540 ATCAGGATTC TGGCAGGCTG CACGACAGGA GCCATGGCAG TGACCTGCGC CCAGCCCACG 600
GATGTGGTCA AGGTCCGATT TCAAGCCATG ATACGCCTGG GAACTGGAGG AGAGAGGAAA 660
TACAGAGGGA CTATGGATGC CTACAGAACC ATCGCCAGGG AGGAAGGAGT CAGGGGCCTG 720
TGGAAAGGGA CTTGGCCCAA CATCACAAGA AATGCCATTG TCAACTGTGC TGAGATGGTG 780
ACCTACGACA TCATCAAGGA GAAGTTGCTG GAGTCTCACC TGTTTACTGA CAACTTCCCC 840
TGTCACTTTG TCTCTGCCTT TGGAGCTGGC TTCTGTGCCA CAGTGGTGGC CTCCCCGGTC 900
GATGTGGTAA AGACCCGATA CATGAACGCT CCCCTAGGCA GGTACCGCAG CCCTCTGCAC 960
TGTATGCTGA AGATGGTGGC TCACGAGGGA CCCACGGCCT TCTACAAAGG ATTTGTGCCC 1020
TCCTTTCTGC GTCTGGGAGC TTGGAACGTG ATGATGTTTG TAACATATCA GCAACTGAAG 1080
AGGGCCTTAA TGAAAGTCCA GGTACTGCGG GAATCTCCGT TTTGAACAAG GCAAGCAGGC 1140
TGCCTGGAAC AGAACAAAGC GTCTCTGCCT GGGACACAGG CCCACACGTC AGAACCGTGC 1200
ACGC 1204
(2) INFORMATION FOR SEQ ID NO: 8:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 308 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 8 :
Met Val Gly Leu Gin Pro Ser Glu Val Pro Pro Thr Thr Val Val Lys 1 5 10 15
Phe Leu Gly Ala Gly Thr Ala Ala Cys Phe Ala Asp Leu Leu Thr Phe 20 25 30
Pro Leu Asp Thr Ala Lys Val Arg Leu Gin He Gin Gly Glu Asn Pro 35 40 45
Gly Ala Gin Ser Val Gin Tyr Arg Gly Val Leu Gly Thr He Leu Thr 50 55 60
Met Val Arg Thr Glu Gly Pro Arg Ser Pro Tyr Ser Gly Leu Val Ala 65 70 75 80
Gly Leu His Arg Gin Met Ser Phe Ala Ser He Arg He Gly Leu Tyr 85 90 95
Asp Ser Val Lys Gin Phe Tyr Thr Pro Lys Gly Ala Asp His Ser Ser 100 105 110
Val Ala He Arg He Leu Ala Gly Cys Thr Thr Gly Ala Met Ala Val 115 120 125 Thr Cys Ala Gin Pro Thr Asp Val Val Lys Val Arg Phe Gin Ala Met 130 135 140
He Arg Leu Gly Thr Gly Gly Glu Arg Lys Tyr Arg Gly Thr Met Asp 145 150 155 160
Ala Tyr Arg Thr He Ala Arg Glu Glu Gly Val Arg Gly Leu Trp Lys 165 170 175
Gly Thr Trp Pro Asn He Thr Arg Asn Ala He Val Asn Cys Ala Glu 180 185 190
Met Val Thr Tyr Asp He He Lys Glu Lys Leu Leu Glu Ser His Leu 195 200 205
Phe Thr Asp Asn Phe Pro Cys His Phe Val Ser Ala Phe Gly Ala Gly 210 215 220
Phe Cys Ala Thr Val Val Ala Ser Pro Val Asp Val Val Lys Thr Arg 225 230 235 240
Tyr Met Asn Ala Pro Leu Gly Arg Tyr Arg Ser Pro Leu His Cys Met 245 250 255
Leu Lys Met Val Ala Gin Glu Gly Pro Thr Ala Phe Tyr Lys Gly Phe 260 265 270
Val Pro Ser Phe Leu Arg Leu Gly Ala Trp Asn Val Met Met Phe Val 275 280 285
Thr Tyr Glu Gin Leu Lys Arg Ala Leu Met Lys Val Gin Val Leu Arg 290 295 300
Glu Ser Pro Phe 305
(2) INFORMATION FOR SEQ ID NO : 9 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 307 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 9 :
Met Val Asn Pro Thr Thr Ser Glu Val Gin Pro Thr Met Gly Val Lys 1 5 10 15
He Phe Ser Ala Gly Val Ser Ala Cys Leu Ala Asp He He Thr Phe 20 25 30
Pro Leu Asp Thr Ala Lys Val Arg Leu Gin He Gin Gly Glu Gly Gin 35 40 45 Ala Ser Ser Thr He Arg Tyr Lys Gly Val Leu Gly Thr He Thr Thr 50 55 60
Leu Ala Lys Thr Glu Gly Leu Pro Lys Leu Tyr Ser Gly Leu Pro Ala 65 70 75 80
Gly He Gin Arg Gin He Ser Phe Ala Ser Leu Arg He Gly Leu Tyr 85 90 95
Asp Ser Val Gin Glu Tyr Phe Ser Ser Gly Arg Glu Thr Pro Ala Ser 100 105 110
Leu Gly Asn Lys He Ser Ala Gly Leu Met Thr Gly Gly Val Ala Val 115 120 125
Phe He Gly Gin Pro Thr Glu Val Val Lys Val Arg Met Gin Ala Gin 130 135 140
Ser His Leu His Gly He Lys Pro Arg Tyr Thr Gly Thr Tyr Asn Ala 145 150 155 160
Tyr Arg Val He Ala Thr Thr Glu Ser Leu Ser Thr Leu Trp Lys Gly 165 170 175
Thr Thr Pro Asn Leu Met Arg Asn Val He He Asn Cys Thr Glu Leu 180 185 190
Val Thr Tyr Asp Leu Met Lys Gly Ala Leu Val Asn Asn Lys He Leu 195 200 205
Ala Asp Asp Val Pro Cys His Leu Leu Ser Ala Leu Val Ala Gly Phe 210 215 220
Cys Thr Thr Leu Leu Ala Ser Pro Val Asp Val Val Lys Thr Arg Phe 225 230 235 240
He Asn Ser Leu Pro Gly Gin Tyr Pro Ser Val Pro Ser Cys Ala Met 245 250 255
Ser Met Tyr Thr Lys Glu Gly Pro Thr Ala Phe Phe Lys Gly Phe Val 260 265 270
Ala Ser Phe Leu Arg Leu Gly Ser Trp Asn Val He Met Phe Val Cys 275 280 285
Phe Glu Gin Leu Lys Lys Glu Leu Met Lys Ser Arg Gin Thr Val Asp 290 295 300
Cys Thr Thr 305
(2) INFORMATION FOR SEQ ID NO: 10:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 309 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 10:
Met Val Gly Phe Lys Ala Thr Asp Val Pro Pro Thr Ala Thr Val Lys 1 5 10 15
Phe Leu Gly Ala Gly Thr Ala Ala Cys He Ala Asp Leu He Thr Phe 20 25 30
Pro Leu Asp Thr Ala Lys Val Arg Leu Gin He Gin Gly Glu Ser Gin 35 40 45
Gly Leu Val Arg Thr Ala Ala Ser Ala Gin Tyr Arg Gly Val Leu Gly 50 55 60
Thr He Leu Thr Met Val Arg Thr Glu Gly Pro Arg Ser Leu Tyr Asn 65 , 70 75 80
Gly Leu Val Ala Gly Leu Gin Arg Gin Met Ser Phe Ala Ser Val Arg 85 90 95
He Gly Leu Tyr Asp Ser Val Lys Gin Phe Tyr Thr Lys Gly Ser Glu 100 105 110
His Ala Gly He Gly Ser Arg Leu Leu Ala Gly Ser Thr Thr Gly Ala 115 120 125
Leu Ala Val Ala Val Ala Gin Pro Thr Asp Val Val Lys Val Arg Phe 130 135 140
Gin Ala Gin Ala Arg Ala Gly Gly Gly Arg Arg Tyr Gin Ser Thr Val 145 150 155 160
Glu Ala Tyr Lys Thr He Ala Arg Glu Glu Gly He Arg Gly Leu Trp 165 170 175
Lys Gly Thr Ser Pro Asn Val Ala Arg Asn Ala He Val Asn Cys Ala 180 185 190
Glu Leu Val Thr Tyr Asp Leu He Lys Asp Thr Leu Leu Lys Ala Asn 195 200 205
Leu Met Thr Asp Asp Leu Pro Cys His Phe Thr Ser Ala Phe Gly Ala 210 215 220
Gly Phe Cys Thr Thr Val He Ala Ser Pro Val Asp Val Val Lys Thr 225 230 235 240
Arg Tyr Met Asn Ser Ala Leu Gly Gin Tyr His Ser Ala Gly His Cys 245 250 255
Ala Leu Thr Met He Arg Lys Glu Gly Pro Arg Ala Phe Tyr Lys Gly 260 265 270
Phe Met Pro Ser Phe Leu Arg Leu Gly Ser Trp Asn Val Val Met Phe 275 280 285
Val Thr Tyr Glu Gin Leu Lys Arg Ala Leu Met Ala Ala Tyr Gin Ser 290 295 300
Arg Glu Ala Pro Phe 305 (2) INFORMATION FOR SEQ ID NO: 11:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 11: GGACTCACAG GTAAGACCCC 20
(2) INFORMATION FOR SEQ ID NO: 12:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 12 : TCTCCTGCAG CCCCACCGCT 20
(2) INFORMATION FOR SEQ ID NO: 13:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 13: CCGCCTGCAG GTAGGTGCCC 20
(2) INFORMATION FOR SEQ ID NO : 14 :
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 1 :
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Ala Thr Cys Cys Ala Gly 1 5 10 15
Gly Gly Gly Gly 20
(2) INFORMATION FOR SEQ ID NO: 15:
(i) SEQUENCE CHARACTERISTICS: ' (A) LENGTH: 20 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 15: GGCGCGGACA GTGAGTGACC 20
(2) INFORMATION FOR SEQ ID NO: 16:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:16: CCCCTCCCAG ACTCCAGCCT 20
(2) INFORMATION FOR SEQ ID NO: 17:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO : 17 : CTGTGGAAAG GTAGGTCTGG 20 (2) INFORMATION FOR SEQ ID NO: 18:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:18:
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Gly Ala Ala Cys Thr Thr 1 5 10 15
Thr Gly Cys Cys 20
(2) INFORMATION FOR SEQ ID NO: 19:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 19: CTGCTCACTG GTGAGGCCCT 20
(2) INFORMATION FOR SEQ ID NO: 20:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 20: TCCTCTGCAG ACAACTTCCC 20
(2) INFORMATION FOR SEQ ID NO: 21:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 base pairs
(B) TYPE: nucleic acid (C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 21: TCTACAAGGG GTGAGCCTCC 20
(2) INFORMATION FOR SEQ ID NO: 22:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 22: TTCTTATCAG ATTTACACCC 20
(2) INFORMATION FOR SEQ ID NO: 23:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 20 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:23: GGACTACCAC CTGCTCACTG 20
(2) INFORMATION FOR SEQ ID NO: 24:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 19 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA" (xi) SEQUENCE DESCRIPTION: SEQ ID NO:24: CCCGTAACAT ATGGACTTT 19
(2) INFORMATION FOR SEQ ID NO: 25:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 30 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:25: TTCACCACGT CCACCCGGGG GGATGCCACC 30
(2) INFORMATION FOR SEQ ID NO: 26:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 6 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: other nucleic acid (A) DESCRIPTION: /desc = "DNA"
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:26: AATAAA (2) INFORMATION FOR SEQ ID NO: 27:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 403 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: unknown
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:27:
Arg Arg Gly His Pro He Pro Ala Ala Thr Ser Trp Asp Gly Ala Leu 1 5 ιo 15
Gly Ser Pro Cys Ala Ala Pro Ala Val Ala Gly He Thr Ala Pro Pro 20 25 30
Leu His Ser Pro Gly Leu Trp Ser Ser Leu Ser Pro Trp Thr Ser Ser 35 40 45 Arg Pro Arg Asp Trp Ala Glu Pro Ser Arg Thr Met Val Gly Leu Lys 50 55 60
Pro Ser Asp Val Pro Pro Thr Met Ala Val Lys Phe Leu Gly Ala Gly 65 70 75 80
He Ala Ala Cys Phe Ala Glu Leu Val Thr Phe Pro Leu Asp Thr Ala 85 90 95
Lys Val Arg Leu Gin He Gin Gly Glu Asn Gin Ala Val Gin Thr Ala 100 105 110
Arg Leu Val Gin Tyr Arg Gly Val Leu Gly Thr He Leu Thr Met Val 115 120 125
Arg (Thr Glu Gly Pro Cys Ser Pro Tyr Asn Gly Leu Val Ala Gly Leu 130 135 140
Gin Arg Gin Met Ser Phe Ala Ser He Arg He Gly Leu Tyr Asp Ser 145 150 155 160
Val Lys Gin Val Tyr Thr Pro Lys Gly Ala Asp Asn Ser Ser L,eu Thr 165 170 175
Thr Arg He Leu Ala Gly Cys Thr Thr Gly Ala Met Ala Val Thr Cys 180 185 190
Ala Gin Pro Thr Asp Val Val Lys Val Arg Phe Gin Ala Ser He His 195 200 205
Leu Gly Pro Ser Arg Ser Asp Arg Lys Tyr Ser Gly Thr Met Asp Ala 210 215 220
Tyr Arg Thr He Ala Arg Glu Glu Gly Val Arg Gly Leu Trp Lys Gly 225 230 235 240
Thr Leu Pro Asn He Met Arg Asn Ala He Val Asn Cys Ala Glu Val 245 250 255
Val Thr Tyr Asp He Leu Lys Glu Lys Leu Leu Asp Tyr His Leu Leu 260 265 270
Thr Asp Asn Phe Pro Cys His Phe Val Ser Ala Phe Gly Ala Gly Phe 275 280 285
Cys Ala Thr Val Val Ala Ser Pro Val Asp Val Val Lys Thr Arg Tyr 290 295 300
Met Asn Ser Pro Pro Gly Gin Tyr Phe Ser Pro Leu Asp Cys Met He 305 310 315 320
Lys Met Val Ala Gin Glu Gly Pro Thr Ala Phe Tyr Lys Gly Phe Thr 325 330 335
Pro Ser Phe Leu Arg Leu Gly Ser Trp Asn Val Val Met Phe yal Thr 340 345 350
Tyr Glu Gin Leu Lys Arg Ala Leu Met Lys Val Gin Met Leu Arg Glu 355 360 365
Ser Pro Phe Tyr Arg Gin Glu Gly His Trp Leu Thr Cys Pro Lys Pro 370 375 380 Val Lys Asn Gly Arg Lys Arg Cys He His Ala His Met Asp Thr Asp 385 390 395 400
Pro His He
(2) INFORMATION FOR SEQ ID NO: 28:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 387 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown i (D) TOPOLOGY: unknown
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:28:
Gly Gly Ala He Gin Ser Leu Leu Pro Pro Pro Gly Met Glu Pro Gly 1 5 10 15
Ala Pro Val Leu Pro Leu Pro Trp Gin Asp Ser Gin Pro His Arg Cys 20 25 30
Thr Glu Ala Gin Gly Cys Gly Ala Ala Ser Leu Leu Gly Pro Pro Leu 35 40 45
Gly Pro Lys Gly Thr Gly Gin Ser Leu Pro Gly Leu Trp Leu Asp Ser 50 55 60
Leu Gin Thr Cys Leu Pro Pro Trp Leu Ser Ser Trp Gly Gin Ala Gin 65 70 75 80
Gin Pro Val Leu Leu Asn Ser Leu Pro Phe His Trp Thr Gin Pro Arg 85 90 95
Ser Ala Cys Arg Ser Arg Gly Arg Thr Arg Arg Ser Arg Arg Pro Gly 100 105 110
Ser Cys Ser Thr Val Ala Cys Trp Ala Pro Ser Pro Trp Cys Gly Leu 115 120 125
Arg Val Pro Ala Ala Pro Thr Met Gly Trp Trp Pro Ala Cys Ser Ala 130 135 140
Arg Ala Ser Pro Pro Ser Ala Ser Ala Ser Met Thr Pro Ser Ser Arg 145 150 155 160
Cys Thr Pro Pro Lys Ala Arg Thr Thr Pro Ala Ser Leu Pro Gly Phe 165 170 1,75
Trp Pro Ala Ala Pro Gin Glu Pro Trp Arg Pro Val Pro Ser Pro Gin 180 185 190
Met Trp Arg Ser Asp Phe Arg Pro Ala Tyr Thr Ser Gly His Pro Gly 195 200 205 Ala Thr Glu Asn Thr Ala Gly Leu Trp Thr Pro Thr Glu Pro Ser Pro 210 215 220
Gly Arg Lys Glu Ser Gly Ala Cys Gly Lys Glu Leu Cys Pro Thr Ser 225 230 235 240
Gly Met Leu Ser Ser Thr Val Leu Arg Trp Pro Thr Thr Ser Ser Arg 245 250 255
Arg Ser Cys Trp Thr Thr Thr Cys Ser Leu Thr Thr Ser Pro Ala Thr 260 265 270
Leu Ser Leu Pro Leu Glu Pro Ala Ser Val Pro Gin Trp Trp Pro Pro 275 280 285
Arg Trp Thr Trp Arg Pro Gly He Thr His Leu Gin Ala Ser Thr Ser 290 295 300
Ala Pro Ser Thr Val Arg Trp Trp Pro Arg Arg Ala Pro Gin Pro Ser 305 310 315 320
Thr Arg Asp Leu His Pro Pro Phe Cys Val Trp Asp Pro Gly Thr Trp 325 330 335
Cys Ser Pro Met Ser Ser Asn Gly Pro Lys Ser Arg Cys Tyr Gly Asn 340 345 350
His Arg Phe Glu Gin Asp Lys Lys Ala Thr Gly Ser Arg Val Arg Asn 355 360 365
Gin Leu Arg Met Glu Glu Asn Gly Ala Ser Thr His Thr Trp Thr Gin 370 375 380
Thr His Thr 385
(2) INFORMATION FOR SEQ ID NO: 29:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 399 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: unknown
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:29:
Glu Gly Pro Ser Asn Pro Cys Cys His Leu Leu Gly Trp Ser Pro Arg 1 5 10 15
Glu Pro Leu Cys Cys Pro Cys Arg Gly Arg Thr His Ser Pro Thr Ala 20 25 30
Ala Leu Lys Pro Arg Ala Val Glu Gin Pro Leu Ser Leu Asp Leu Leu 35 40 45
Ser Ala Leu Lys Gly Leu Gly Arg Ala Phe Gin Gin Tyr Gly Trp Thr 50 55 60 Glu Ala Phe Arg Arg Ala Ser His His Gly Cys Glu Val Pro Gly Gly 65 70 75 80
Arg His Ser Ser Leu Phe Cys Thr Arg Tyr Leu Ser Thr Gly His Ser 85 90 95
Gin Gly Pro Pro Ala Asp Pro Gly Gly Glu Pro Gly Gly Pro Gin Gly 100 105 110
Pro Ala Arg Ala Val Pro Trp Arg Ala Gly His His Pro Asp His Gly 115 120 125
Ala Asp Gly Ser Leu Gin Pro Leu Gin Trp Ala Gly Gly Arg Pro Ala 130 135 140
Ala iPro Asp Glu Leu Arg Leu His Pro His Arg Pro Leu Leu Arg Gin 145 150 155 160
Ala Gly Val His Pro Gin Arg Arg Gly Gin Leu Gin Pro His Tyr Pro 165 170 175
Asp Phe Gly Arg Leu His His Arg Ser His Gly Gly Asp Leu Cys Pro 180 185 190 '
Ala His Arg Cys Gly Glu Gly Pro He Ser Gly Gin His Thr Pro Arg 195 200 205
Ala He Gin Glu Arg Gin Lys He Gin Arg Asp Tyr Gly Arg Leu Gin 210 215 220
Asn His Arg Gin Gly Gly Arg Ser Gin Gly Pro Tyr Glu Arg Asn Phe 225 230 235 240
Ala Gin His His Glu Glu Cys Tyr Arg Gin Leu Gly Gly Gly Asp Leu 245 250 255
Arg His Pro Gin Gly Glu Ala Ala Gly Leu Pro Pro Ala His Gin Leu 260 265 270
Pro Leu Pro Leu Cys Leu Cys Leu Trp Ser Arg Leu Leu Cys His Ser 275 280 285
Gly Gly Leu Pro Gly Gly Arg Gly Glu Asp Pro Val Tyr Glu Leu Thr 290 295 300
Ser Arg Pro Val Leu Gin Pro Pro Arg Leu Tyr Asp Lys Asp Gly Gly 305 310 315 320
Pro Gly Gly Pro His Ser Leu Leu Gin Gly He Tyr Thr Leu Leu Phe 325 330 335
Ala Phe Gly He Leu Glu Arg Gly Asp Val Arg Asn Leu Ala Ala Glu 340 345 350
Thr Gly Pro Asp Glu Ser Pro Asp Val Thr Gly He Thr Val L.eu Asn 355 360 365
Lys Thr Arg Arg Pro Leu Val Ala Lys Val Ser Glu Thr Ser Glu Trp 370 375 380
Lys Lys Thr Val His Pro Arg Thr His Gly His Arg Pro Thr His 385 390 395 (2) INFORMATION FOR SEQ ID NO: 30:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 339 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: unknown
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 30:
Arg Gly His Pro He Pro Ala Ala Thr Ser Trp Asp Gly Ala Leu Gly 1 , 5 10 15
Ser Pro Cys Ala Ala Pro Ala Val Ala Gly Leu Thr Ala Pro Pro Leu 20 25 30
Ser Pro Gly Leu Trp Ser Ser Leu Ser Pro Trp Thr Ser Ser Arg Pro 35 40 45
Arg Asp Trp Ala Glu Pro Ser Arg Thr Met Val Gly Leu Lys Pro Ser 50 55 60
Asp Val Pro Pro Thr Met Ala Val Lys Phe Leu Gly Ala Gly Thr Ala 65 70 75 80
Ala Cys Phe Ala Glu Leu Val Thr Phe Pro Leu Asp Thr Ala Lys Val 85 90 95
Arg Leu Gin He Gin Gly Glu Asn Gin Ala Val Gin Thr Ala Arg Leu 100 105 110
Val Gin Tyr Arg Gly Val Leu Gly Thr He Leu Thr Met Val Arg Thr 115 120 125
Glu Gly Pro Cys Ser Pro Tyr Asn Gly Leu Val Ala Gly Leu Gin Arg 130 135 140
Gin Met Ser Phe Ala Ser He Arg He Gly Leu Tyr Asp Ser Val Lys 145 150 155 160
Gin Val Tyr Thr Pro Lys Gly Ala Asp Asn Ser Ser Leu Thr Thr Arg 165 170 175
He Leu Ala Gly Cys Thr Thr Gly Ala Met Ala Val Thr Cys Ala Gin 180 185 190
Pro Thr Asp Val Val Lys Val Arg Phe Gin Ala Ser He His Leu Gly 195 200 205
Pro Ser Arg Ser Asp Arg Lys Tyr Ser Gly Thr Met Asp Ala Tyr Arg 210 215 220
Thr He Ala Arg Phe Glu Gly Val Arg Gly Leu Trp Lys Gly Thr Leu 225 230 235 240
Pro Asn He Met Arg Asn Ala He Val Asn Cys Ala Glu Val Val Thr 245 250 255 Tyr Asp He Leu Lys Glu Lys Leu Asp Tyr His Leu Leu Thr Asp Asn 260 265 270
Phe Pro Cys His Phe Val Ser Ala Phe Gly Ala Gly Phe Cys Ala Thr 275 280 285
Val Val Ala Ser Pro Val Asp Val Val Lys Thr Arg Tyr Met Asn Ser 290 295 300
Pro Pro Gly Gin Tyr Phe Ser Pro Leu Asp Cys Met He Lys Met Val 305 310 315 320
Ala Gin Glu Gly Pro Thr Ala Phe Tyr Lys Gly Ala Ser Ser Cys Leu 325 330 335
Gin His Ser
(2) INFORMATION FOR SEQ ID NO: 31:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 331 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: unknown
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 31:
Gly Ala He Gin Ser Leu Leu Pro Pro Pro Gly Met Glu Pro Gly Ala 1 5 10 15
Pro Val Leu Pro Leu Pro Trp Gin Asp Ser Gin Pro His Arg Cys He 20 25 30
Glu Ala Gin Gly Cys Gly Ala Ala Ser Leu Leu Gly Pro Pro Leu Gly 35 40 45
Pro Lys Gly Thr Gly Gin Ser Leu Pro Gly Leu Trp Leu Asp Ser Leu 50 55 60
Gin Thr Cys Leu Pro Pro Trp Leu Ser Ser Trp Gly Gin Ala Gin Gin 65 70 75 80
Pro Val Leu Leu Asn Ser Leu Pro Phe His Trp Thr Gin Pro Arg Ser 85 90 95
Ala Cys Arg Ser Arg Gly Arg He Arg Arg Ser Arg Arg Pro Gly Ser 100 105 110
Cys Ser Thr Val Ala Cys Trp Ala Pro Ser Pro Trp Cys Gly Leu Arg 115 120 125
Val Pro Ala Ala Pro Thr Met Gly Trp Trp Pro Ala Cys Ser Ala Arg 130 135 140
Ala Ser Pro Pro Ser Ala Ser Ala Ser Met Thr Pro Ser Ser Arg Cys 145 150 155 160 Thr Pro Pro Lys Ala Arg Thr Thr Pro Ala Ser Leu Pro Gly Phe Trp 165 170 175
Pro Ala Ala Pro Gin Glu Pro Trp Arg Pro Val Pro Ser Pro Gin Met 180 185 190
Trp Arg Ser Asp Phe Arg Pro Ala Tyr Thr Ser Gly His Pro Gly Ala 195 200 205
Thr Glu Asn Thr Ala Gly Leu Trp Thr Pro Thr Glu Pro Ser Pro Gly 210 215 220
Arg Lys Glu Ser Gly Ala Cys Gly Lys Glu Leu Cys Pro Thr Ser Gly 225 230 235 240
Met Leu Ser Ser Thr Val Leu Arg Trp Pro Thr Thr Ser Ser Arg Arg 245 250 255
Ser Cys Trp Thr Thr Thr Cys Ser Leu Thr Thr Ser Pro Ala Thr Leu 260 265 270
Ser Leu Pro Leu Glu Pro Ala Ser Val Pro Gin Trp Trp Pro Pro Arg 275 280 285
Trp He Trp Arg Pro Gly He Thr His Leu Gin Ala Ser Thr Ser Ala 290 295 300
Pro Ser Thr Val Arg Trp Trp Pro Arg Arg Ala Pro Gin Pro Ser Thr 305 310 315 320
Arg Gly Glu Pro Pro Pro Ala Ser Ser Thr Pro 325 330
(2) INFORMATION FOR SEQ ID NO: 32:
(i) SEQUENCE CHARACTERISTICS:
. (A) LENGTH: 340 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: unknown
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 32:
Glu Gly Pro Ser Asn Pro Cys Cys His Leu Leu Gly Trp Ser Pro Arg 1 5 10 15
Glu Pro Leu Cys Cys Pro Cys Arg Gly Arg Thr His Ser Pro Thr Ala 20 25 30
Ala Leu Lys Pro Arg Ala Val Glu Gin Pro Leu Ser Leu Asp Leu Leu 35 40 45
Ser Ala Leu Lys Gly Leu Gly Arg Ala Phe Gin Asp Tyr Gly Trp Thr 50 55 60 Glu Ala Phe Arg Arg Ala Ser His His Gly Cys Glu Val Pro Gly Gly 65 70 75 80
Arg His Ser Ser Leu Phe Cys Thr Arg Tyr Leu Ser Thr Gly His Ser 85 90 95
Gin Gly Pro Pro Ala Asp Pro Gly Gly Glu Pro Gly Gly Pro Asp Gly 100 105 110
Pro Ala Arg Ala Val Pro Trp Arg Ala Gly His His Pro Asp His Gly 115 120 125
Ala Asp Gly Ser Leu Gin Pro Leu Gin Trp Ala Gly Gly Arg Pro Ala 130 135 140
Ala Pro Asp Glu Leu Arg Leu His Pro His Arg Pro Leu Leu Arg Gin 145 150 155 160
Ala Gly Val His Pro Gin Arg Arg Gly Gin Leu Gin Pro His Tyr Pro 165 170 175
Asp Phe Gly Arg Leu His His Arg Ser His Gly Gly Asp Leu Cys Pro 180 185 190 .
Ala His Arg -Cys Gly Glu Gly Pro He Ser Gly Gin His Thr Pro Arg 195 200 205
Ala He Gin Glu Arg Gin Lys He Gin Arg Asp Tyr Gly Arg Leu Gin 210 215 220
Asn His Arg Gin Gly Gly Arg Ser Gin Gly Pro Val Glu Arg Asn Phe 225 230 235 240
Ala Gin His His Glu Glu Cys Tyr Arg Gin Leu Cys Gly Gly Asp Leu 245 250 255
Arg His Pro Gin Gly Glu Ala Ala Gly Leu Pro Pro Ala His Cys Leu 260 265 270
Pro Leu Pro Leu Cys Leu Cys Leu Trp Ser Arg Leu Leu Cys His Ser 275 280 285
Gly Gly Leu Pro Gly Gly Arg Gly Glu Asp Pro Val Tyr Glu Leu Thr 290 295 300
Ser Arg Pro Val Leu Gin Pro Pro Arg Leu Tyr Asp Lys Asp Gly Gly 305 310 315 320
Pro Gly Gly Pro His Ser Leu Leu Cys Gly Val Ser Leu Leu Leu Pro 325 330 335
Pro Ala Leu Pro 340
(2) INFORMATION FOR SEQ ID NO: 33:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 397 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: unknown (ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:33:
Glu Thr Thr Val Asn Gly Glu Ala Arg Pro Ser Asp Pro Ala Ala Thr 1 5 10 15
Trp Ser Cys Ala He Gly Trp Pro Cys Thr Thr Gin Pro Trp Leu Asp 20 25 30
Ala Gin Leu Pro Pro Thr Glu Ala Lys Asp Cys Gin Ala Ser Ser Leu 35 40 45
Leu Gly Pro Pro Ala Ala Lys Glu Pro Gly Pro Phe Pro Gly Thr Met 50 55 60
Val Gly Leu Gin Pro Ser Glu Val Pro Pro Thr Thr Val Val Lys Phe 65 70 75 80
Leu Gly Ala Gly Thr Ala Ala Cys Phe Ala Asp Leu Leu Thr Phe Pro 85 90 9'5
Leu Asp Thr Ala Lys Val Arg Leu Gin He Gin Gly Glu Asn Pro Gly 100 105 110
Ala Cys Ser Val Gin Tyr Arg Gly Val Leu Gly Thr He Leu Thr Met 115 120 125
Val Arg Thr Glu Gly Pro Arg Ser Pro Tyr Ser Gly Leu Val Ala Gly 130 135 140
Leu His Arg Gin Met Ser Phe Ala Ser He Arg He Gly Leu Tyr Asp 145 150 155 160
Ser Val Lys Gin Phe Tyr Thr Pro Lys Gly Ala Asp His Ser Ser Val 165 170 175
Ala He Arg He Leu Ala Gly Cys Thr Thr Gly Ala Met Ala Val Thr 180 185 190
Cys Ala Gin Pro Thr Asp Val Val Lys Val Arg Phe Gin Ala Met He 195 200 205
Arg Leu Gly Thr Gly Gly Glu Arg Lys Tyr Arg Gly Thr Met Asp Ala 210 215 220
Tyr Arg Thr He Ala Arg Glu Glu Gly Val Arg Gly Leu Trp Lys Gly 225 230 235 240
Thr Trp Pro Asn He Thr Arg Asn Ala He Val Asn Cys Ala Glu Met 245 250 255
Val Thr Tyr Asp He He Lys Glu Lys Leu Leu Glu Ser His Leu Phe 260 265 270
Thr Asp Asn Phe Pro Cys His Phe Val Ser Ala Phe Gly Ala Gly Phe 275 280 285
Cys Ala Thr Val Val Ala Ser Pro Val Asp Val Val Lys Thr Arg Tyr 290 295 300 Met Asn Ala Pro Leu Gly Arg Tyr Arg Ser Pro Leu His Cys Met Leu 305 310 315 320
Lys Met Val Ala Gin Glu Gly Pro Thr Ala Phe Tyr Lys Gly Phe Val 325 330 335
Pro Ser Phe Leu Arg Leu Gly Ala Trp Asn Val Met Met Phe Val Thr 340 345 350
Tyr Glu Gin Leu Lys Arg Ala Leu Met Lys Val Gin Val Leu Arg Glu 355 360 365
Ser Pro Phe Thr Arg Gin Ala Gly Cys Leu Glu Gin Asn Lys Ala Ser 370 375 380
Leu Pro Gly Thr Gin Ala His Thr Ser Glu Pro Cys Thr 385 390 395
(2) INFORMATION FOR SEQ ID NO: 34:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 381 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: unknown
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:34:
Arg Gin Gin Met Val Arg Pro Gly Arg Gin He Leu Leu Leu Pro Asn 1 5 10 15
Gly Val Glu Pro Gly Gly Pro Ala Leu Pro Asn Leu Gly Thr His Ser 20 25 30
Phe Leu Pro Glu Leu Lys Gin Lys He Ala Arg Gin Ala Leu Ser Ser 35 40 45
Asp Leu His Arg Gin Gin Arg Asn Gin Ala His Ser Pro Gly Pro Trp 50 55 60
Leu Asp Phe Ser Pro Pro Lys Cys Leu Pro Gin Arg Leu Ser Ser Trp 65 70 75 80
Gly Pro Ala Leu Arg Pro Val Leu Arg Thr Ser Ser Leu Phe Pro Trp 85 90 95
Thr Pro Pro Arg Ser Val Cys Arg Ser Lys Gly Arg Thr Gin Gly Leu 100 105 110
Arg Ala Cys Ser Thr Ala Val Cys Trp Val Pro Ser Leu Trp Cys Ala 115 120 125
Asp Arg Val Pro Ala Ala Pro Thr Ala Asp Trp Ser Leu Ala Cys Thr 130 135 140
Ala Arg Val Leu Pro Pro Phe Glu Leu Ala Ser Thr Thr He Ser Ser 145 150 155 160 Ser Ser Thr Pro Pro Arg Glu Arg Thr Thr Pro Ala Ser Pro Ser Gly 165 170 175
Phe Trp Gin Ala Ala Arg Gin Glu Pro Trp Gin Pro Ala Pro Ser Pro 180 185 190
Arg Met Trp Arg Ser Asp Phe Lys Pro Tyr Ala Trp Glu Leu Glu Glu 195 200 205
Arg Gly Asn Thr Glu Gly Leu Trp Met Pro Thr Glu Pro Ser Pro Gly 210 215 220
Arg Lys Glu Ser Gly Ala Cys Gly Lys Gly Leu Gly Pro Thr Ser Gin 225 230 235 240
Glu Met Pro Leu Ser Thr Val Leu Arg Trp Pro Thr Thr Ser Ser Arg 245 250 255
Arg Ser Cys Trp Ser Leu Thr Cys Leu Leu Thr Thr Ser Pro Val Thr 260 265 270
Leu Ser Leu Pro Leu Glu Leu Ala Ser Val Pro Gin Trp Trp Pro Pro 275 280 285
Arg Trp Met Trp Arg Pro Asp Thr Thr Leu Pro Ala Gly Thr Ala Ala 290 295 300
Leu Cys Thr Val Cys Arg Trp Trp Leu Arg Arg Asp Pro Arg Pro Ser 305 310 315 320
Thr Lys Asp Leu Cys Pro Pro Phe Cys Val Trp Glu Leu Gly Thr Cys 325 330 335
Leu His Met Ser Asn Arg Gly Pro Lys Ser Arg Tyr Cys Gly Asn Leu 340 345 350
Arg Phe Glu Gin Gly Lys Gin Ala Ala Trp Asn Arg Thr Lys Arg Leu 355 360 365
Cys Leu Gly His Arg Pro Thr Arg Gin Asn Arg Ala Arg 370 375 380
(2) INFORMATION FOR SEQ ID NO: 35:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 397 amino acids
(B) TYPE: amino acid
(C) STRANDEDNESS: unknown
(D) TOPOLOGY: unknown
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO: 35:
Arg Asp Asn Ser Glu Trp Gly Pro Ala Val Arg Ser Cys Cys Tyr Leu 1 5 10 15
Met Glu Trp Ser Leu Arg Val Ala Leu His Tyr Pro Thr Leu Ala Arg 20 25 30 Arg Thr Ala Ser Ser Leu Asn Ser Lys Arg Leu Pro Gly Lys Leu Ser 35 40 45
Pro Arg Thr Ser He Gly Ser Lys Gly Thr Arg Pro He Pro Arg Asp 50 55 60
His Gly Trp Thr Ser Ala Leu Arg Ser Ala Ser His Asn Gly Cys Glu 65 70 75 80
Val Pro Gly Gly Arg His Cys Gly Leu Phe Cys Gly Pro Pro His Phe 85 90 95
Ser Pro Gly His Arg Gin Gly Pro Ser Ala Asp Pro Arg Gly Glu Pro 100 105 110
Arg Gly Ser Glu Arg Ala Val Pro Arg Cys Ala Gly Tyr His Pro Asp 115 120 125
Tyr Gly Ala His Arg Gly Ser Pro Gin Pro Leu Gin Arg Thr Gly Arg 130 135 140
Trp Pro Ala Pro Pro Asp Glu Phe Cys Leu Met Ser Asn Trp Pro Leu 145 150 155 ' 160
Arg Leu Cys Gin Ala Val Leu His Pro Gin Gly Ser Gly Pro Leu Gin 165 170 175
Arg Arg His Gin Asp Ser Gly Arg Leu His Asp Arg Ser His Gly Ser 180 185 190
Asp Leu Arg Pro Ala His Gly Cys Gly Glu Gly Pro He Ser Ser His 195 200 205
Asp Thr Pro Gly Asn Trp Arg Arg Glu Glu He Gin Arg Asp Tyr Gly 210 215 220
Cys Leu Gin Asn His Arg Gin Gly Gly Arg Ser Gin Gly Pro Val Glu 225 230 235 240
Arg Asp Leu Ala Gin His His Lys Lys Cys His Cys Gin Leu Cys Asp 245 250 255
Gly Asp Leu Arg His His Gin Gly Glu Val Ala Gly Val Ser Pro Val 260 265 270
Tyr Gin Leu Pro Leu Ser Leu Cys Leu Cys Leu Trp Ser Trp Leu Leu 275 280 285
Cys His Ser Gly Gly Leu Pro Gly Gly Cys Gly Lys Asp Pro He His 290 295 300
Glu Arg Ser Pro Arg Gin Val Pro Gin Pro Ser Ala Leu Tyr Ala Glu 305 310 315 320
Asp Gly Gly Ser Gly Gly Thr His Gly Leu Leu Gin Arg He Cys Ala 325 330 335
Leu Leu Ser Ala Ser Gly Ser Leu Glu Arg Asp Asp Val Cys Asn He 340 345 350
Ala Thr Glu Glu Gly Leu Asn Glu Ser Pro Gly Thr Ala Gly He Ser 355 360 365 Val Leu Asn Lys Ala Ser Arg Leu Pro Gly Thr Glu Gin Ser Val Ser 370 375 380
Ala Trp Asp Thr Gly Pro His Val Arg Thr Val His Ala 385 390 395

Claims

CLAIMSWhat is claimed:
1. Isolated or recombinant nucleic acid which encodes a mammalian uncoupling protein 3.
2. The nucleic acid of Claim 1 wherein the uncoupling protein 3 is human.
3. The nucleic acid of Claim 1 selected from the group consisting of: SEQ ID NO: 1, SEQ ID NO: 2 a╬╖d SEQ ID NO: 7.
4. The nucleic acid of Claim 1 wherein said nucleic acid hybridizes under stringent conditions with DNA selected from the group consisting of: SEQ ID NO: 1, the complement of SEQ ID NO:l, SEQ ID NO: 2 the complement of SEQ ID NO: 2, SEQ ID NO: 7 and the complement of SEQ ID NO: 7.
5. The nucleic acid of Claim 1 wherein the nucleic acid encodes an amino acid sequence selected from the group consisting of: SEQ ID NO: 3, SEQ ID NO: 4, and SEQ ID NO. 8.
6. A recombinant nucleic acid construct comprising the nucleic acid of Claim 1.
7. The recombinant nucleic acid construct of Claim 6 wherein the nucleic acid is selected from the group consisting of: SEQ ID NO: 1, SEQ ID NO: 2 and SEQ ID NO: 7.
8. The recombinant nucleic acid construct of Claim 6 wherein the nucleic acid encodes the amino acid sequence selected from the group consisting of: SEQ ID NO : 3 , SEQ ID NO 4 , and SEQ ID NO : 8.
9. The recombinant nucleic acid construct of Claim 6 wherein the nucleic acid is operably linked 'to an expression control sequence.
10. A host cell comprising the nucleic acid of Claim 1.
11. The host cell of Claim 10 wherein the nucleic acid is operably linked to an expression control sequence, whereby mammalian uncoupling protein 3 is expressed when the host cell is maintained under conditions suitable for expression.
12. A method for producing a mammalian uncoupling protein 3 comprising: a) introducing into a host cell a nucleic acid construct comprising a nucleic acid which encodes a mammalian uncoupling protein 3 ; and b) maintaining the host cells produced in step a) under conditions whereby the nucleic acid is expressed and the mammalian uncopling protein 3 is produced.
13. An antibody or functional portion thereof which binds mammalian uncoupling protein 3.
14. A method of detecting mammalian uncoupling protein 3 in a sample comprising: a) contacting a sample with an antibody which binds uncoupling protein 3 , under conditions suitable for specific binding of said antibody to the mammalian uncoupling protein 3; and b) detecting an antibody-mammalian uncoupling protein 3 complex, wherein if the antibody-mammalian uncoupling protein complex is detected, mammalian uncoupling protein 3 is present in the sample .
15. A method of identifying an agent which alters uncoupling protein 3 activity comprising the steps of: a) introducing into a host cell a nucleic acid construct comprising a nucleic acid which encodes a mammalian uncoupling protein 3 ; b) maintaining the host cells produced in step a) under conditions appropriate for expression of the nucleic acid; c) contacting the cells of b) with the agent; and d) detecting mitochondrial electrical potential of the cells of c) in the presence of the agent, wherein a change in mitochondrial electrical potential in the presence of the agent indicates that the agent alters uncoupling protein 3 activity.
16. The method of Claim 15 wherein the mitochondrial electrical potential is detected using fluorescence.
17. A method of identifying an agent which is an activator of uncoupling protien 3 activity comprising the steps of: a) introducing into a host cell a nucleic acid construct comprising a nucleic acid which encodes a mammalian uncoupling protein 3; b) maintaining the host cells produced in step a) under conditions appropriate for expression of the nucleic acid; c) contacting the cells of b) with the agent; and d) detecting mitochondrial electrical potential of the cells of c) in the presence of the agent; wherein a reduction in mitochondrial electrical potential in the presence of the agent indicates that the agent is an activator uncoupling protein 3 activity.
18. The method of Claim 17 wherein the mitochondrial electrical potential is detected using fluorescence.
19. A method of identifying an agent which is an inhibitor of uncoupling protein 3 activity comprising .the steps of: a) introducing into a host cell a nucleic acid construct comprising a nucleic acid which encodes a mammalian uncoupling protein 3; b) maintaining the host cells produced in step a) under conditions appropriate for expression of the nucleic acid; c) contacting the cells of b) with the agent; and .d) detecting mitochondrial electrical potential of the cells in the presence of the agent; wherein an increase in mitochondrial electrical potential in the presence of the agent indicates that the agent is an inhibitor uncoupling protein 3 activity.
20. The method of Claim 19 wherein the mitochondrial electrical potential is detected using fluorescence.
21. A method of inhibiting protein catabolism in a mammal comprising administering to the mammal an effective amount of an inhibitor of uncoupling protein 3.
22. A method of enhancing protein catabolism in a mammal comprising adminstering to the mammal an effective amount of an enhancer of uncoupling protein 3.
23. A method of inhibiting muscle wasting in a mammal comprising adminstering to the mammal an effective amount of an inhibitor of uncoupling protein 3.
24. Use of an inhibitor of uncoupling protein 3 in a method of inhibiting protein catabolism in a mammal, wherein the method comprises administering to the mammal an effective amount of an inhibitor of uncoupling protein 3.
25. Use of an enhancer of uncoupling protein 3 in a method of enhancing protein catabolism in a mammal, wherein the method comprises administering to the mammal an effective amount of an enhancer of uncoupling protein 3.
26. Use of an inhibitor of uncoupling protein 3 in a method of inhibiting protein catabolism in a mammal, wherein the method comprises administering to the mammal an effective amount of an inhibitor of uncoupling protein 3.
PCT/US1998/006959 1997-04-09 1998-04-08 Ucp3: an uncoupling protein homologue WO1998045438A1 (en)

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US60/043,447 1997-04-09
US4625497P 1997-05-12 1997-05-12
US60/046,254 1997-05-12
US89274597A 1997-07-15 1997-07-15
US08/892,745 1997-07-15

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US6620594B1 (en) 1997-05-07 2003-09-16 Novartis Ag Uncoupling protein homologue: UCP 3
EP1027424A1 (en) * 1997-10-09 2000-08-16 Tularik, Inc. Regulators of ucp3 gene expression
EP1027424A4 (en) * 1997-10-09 2004-04-07 Tularik Inc Regulators of ucp3 gene expression
US7390782B2 (en) 1998-04-17 2008-06-24 University Of Vermont And State Agricultural College Methods and products related to metabolic interactions in disease
US7381413B1 (en) 1998-04-17 2008-06-03 University Of Vermont And State Agricultural College Methods and products related to metabolic interactions in disease
WO2000002577A1 (en) * 1998-07-09 2000-01-20 Smithkline Beecham Plc Therapeutic use of uncoupling protein hhfcw60
US7342102B2 (en) 1998-11-30 2008-03-11 Genentech, Inc. Uncoupling protein 5 (UCP5)
WO2000032624A3 (en) * 1998-11-30 2000-11-09 Genentech Inc Uncoupling protein 5 - ucp5
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US6403784B1 (en) 1999-02-09 2002-06-11 Lexicon Genetics Incorporated Human uncoupling proteins and polynucleotides encoding the same
WO2000047617A1 (en) * 1999-02-09 2000-08-17 Lexicon Genetics Incorporated Human uncoupling proteins and polynucleotides encoding the same
US6987178B2 (en) 1999-02-09 2006-01-17 Lexicon Genetics Incorporated Human uncoupling proteins and polynucleotides encoding the same
WO2000068686A1 (en) * 1999-05-10 2000-11-16 Tularik Inc. High-throughput screening assays for modulators of mitochondrial membrane potential
WO2000078941A3 (en) * 1999-06-23 2001-02-22 Univ Vermont Methods and products for manipulating uncoupling protein expression
AU780815B2 (en) * 1999-06-23 2005-04-21 University Of Vermont And State Agricultural College, The Methods and products for manipulating uncoupling protein expression
JP2003503319A (en) * 1999-06-23 2003-01-28 ザ ユニバーシティ オブ バーモント アンド ステイト アグリカルチュラル カレッジ Methods and products for manipulating uncoupled protein expression
US7816319B2 (en) 1999-06-23 2010-10-19 University Of Vermont And State Agricultural College Methods and products for manipulating uncoupling protein expression
WO2001024625A1 (en) * 1999-10-01 2001-04-12 Smithkline Beecham P.L.C. Transgenic rodent comprising a polynucleotide emcoding a human ucp3 polynucleotide
US7105718B2 (en) 2000-03-31 2006-09-12 The Regents Of The University Of Colorado Compositions and methods for regulating metabolism in plants
WO2002007754A2 (en) * 2000-07-25 2002-01-31 Smithkline Beecham Plc New use
WO2002007754A3 (en) * 2000-07-25 2003-06-05 Smithkline Beecham Plc New use
US7510710B2 (en) 2004-01-08 2009-03-31 The Regents Of The University Of Colorado Compositions of UCP inhibitors, Fas antibody, a fatty acid metabolism inhibitor and/or a glucose metabolism inhibitor
US8293240B2 (en) 2004-01-08 2012-10-23 The Regents Of The University Of Colorado Method of treating drug-resistant cancer

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