WO1997016550A1 - Polypeptide fragments derived from the obese gene product - Google Patents

Polypeptide fragments derived from the obese gene product Download PDF

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Publication number
WO1997016550A1
WO1997016550A1 PCT/US1996/017365 US9617365W WO9716550A1 WO 1997016550 A1 WO1997016550 A1 WO 1997016550A1 US 9617365 W US9617365 W US 9617365W WO 9716550 A1 WO9716550 A1 WO 9716550A1
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seq
obf
polypeptide
sequence
diabetes
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PCT/US1996/017365
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French (fr)
Inventor
Claudio Mapelli
Chester A. Meyers
Stanley R. Krystek, Jr.
Jiri Novotny
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Bristol-Myers Squibb Company
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Publication of WO1997016550A1 publication Critical patent/WO1997016550A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/575Hormones
    • C07K14/5759Products of obesity genes, e.g. leptin, obese (OB), tub, fat
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Definitions

  • the present invention concerns polypeptide fragments derived from the obese (ob) gene product and uses thereof.
  • the mouse and human ob gene were recently identified by positional cloning and sequencing (Friedman et al. Nature 372, 425-432 (1994)).
  • ob encodes a 4.5 kb adipose tissue messenger RNA containing a predicted 167-amino acid open reading frame (ORF).
  • ORF predicted amino acid sequence is 84% identical between human and mouse and has features of a secreted protein.
  • the extensive homology deduced for the ob gene product among vertebrates suggests that its function is highly conserved.
  • the present invention is directed to polypeptide fragments of the obese gene product which have anti-obesity and/or anti-diabetic activity. These polypeptides will be referred to herein as the active obese gene product fragments or "OBF" which will be further defined hereinafter.
  • OBF active obese gene product fragments
  • the invention also includes therapeutic methods using OBF. Accordingly, in a first embodiment, the invention is directed to purified preparations of OBF.
  • a preferred murine OBF has the sequence of SEQ.ID.NO.:1 as follows:
  • a preferred human OBF has the sequence of SEQ.ID.NO.:2 as follows: Leu-Glu-Asn-Leu-Arg-Asp-Leu-Leu-His-Leu-Leu-Ala-Phe-Ser-Lys-Ser-Cys-Ser-Leu- Pro-Gln-Thr-Ser-Gly-Leu-Gln-Lys-Pro-Glu-Ser-Leu-Asp-Gly-Val-Leu-Glu-Ala-Ser- Leu-Tyr-Ser-Thr-Glu-Val-Val-Ala-Leu-Ser-Arg-Leu-Gln-Gly-Ser-Leu-Gln-Asp-lle-Leu- Gln-Gln-Leu-Asp-Val-Ser-Pro-Glu-Cys, S,S-crosslinked A preferred human OBF has the sequence of SEQ.ID.NO.:2 as follows: Leu-Glu-
  • Another preferred murine OBF has the sequence of SEQ.ID.NO.:3 as follows: Ser-Lys-Ser-Cys-Ser-Leu-Pro-Gln-Thr-Ser-Gly-Leu-Gln-Lys-Pro-Glu-Ser-Leu-Asp- Gly-Val-Leu-Glu-Ala-Ser-Leu-Tyr-Ser-Thr-Glu-Val-Val-Ala-Leu-Ser-Arg-Leu-Gln- Gly-Ser-Leu-Gln-Asp-lle-Leu-Gln-Gln-Leu-Asp-Val-Ser-Pro-Glu-Cys, S,S-crosslinked
  • Another preferred human OBF has the sequence of SEQ.ID.NO.:4 as follows: Ser-Lys-Ser-Cys-His-Leu-Pro-Trp-Ala-Ser-Gly-Leu-Glu-Thr-Leu-Asp-Ser-Leu-Gly- Gly-Val-Leu-Glu-Ala-Ser-Gly-Tyr-Ser-Thr-Glu-Val-Val-Ala-Leu-Ser-Arg-Leu-Gln- Gly-Ser-Leu-Gln-Asp-Met-Leu-Trp-Gln-Leu-Asp-Leu-Ser-Pro-Gly-Cys, S,S- crosslinked
  • the invention is directed to a method for treating obesity in a patient , wherein the obesity is related to a defect in regulation by the obese protein or can otherwise be overcome by elevating obese protein levels, the method comprising administering an effective amount of OBF to the patient.
  • the invention is directed to a method for treating diabetes in a patient in need of treatment, where the diabetes is obese protein - associated, the method comprising administering an effective amount of OBF to the patient.
  • the invention is directed to a method for diagnosing obese protein-associated diabetes or obesity.
  • the invention is directed to an isolated nucleic acid sequence encoding OBF.
  • the invention is directed to a vector containing nucleic acid encoding OBF.
  • the invention is directed to a host cell transformed with the vector of the invention.
  • the invention is directed to a method for producing OBF from the recombinant host.
  • Figure 1 Three dimensional representation of preferred OBF having 67 amino acids and three alpha helices. It has been discovered that fragments of the ob protein retaining biological activity and accessible by chemical synthesis overcome some of the drawbacks of the full length protein. Specifically, it has been found by secondary structure analysis and molecular modeling that the C-terminal peptide fragments containing the only two cysteine residues present in the mature ob protein, which are preferably disulfide- linked (or functionally equivalent residues that are capable of forming cross-linkages), retains the conformation and overall folding needed for biological activity.
  • therapeutic methods means the anti-obesity and/or the anti-diabetic methods of the invention
  • OFB means the optionally mutated or modified biologically active C-terminal fragments of the ob gene product having less than sixty-eight amino acids and containing two residues at positions 117 and 167 that are capable of forming cross ⁇ linkages , preferably cysteine residues
  • obese protein-associated means that the obesity and or diabetes is partially or wholly due to mutations of the ob gene or any alteration or defect in the ob gene product or metabolic pathway(s) involving the ob gene product resulting in increased risk or clinical manifestation of obesity and/or diabetes
  • biologicalcally active means having serum glucose lowering activity useful for treating type II diabetes; or serum triglyceride lowering activity, or decreased body weight gain, or decreased body weight, or reduction in food consumption or appetite useful for treating obesity.
  • OBF preferably has 67 amino acids and most preferably has the amino acid sequence identified as SEQ. ID. NO:1 or SEQ.ID.NO.:2; however, other biologically active C-terminal fragments of the ob gene product having less than 68 amino acids are also specifically contemplated to be within the scope of the present invention.
  • the amino acid numbering scheme used herein is based on the intact ob protein and is the same as described by Friedman and coworkers in Nature 372, 425-432 (1994).
  • Such fragments of the invention which include mutants or modified fragments that retain biological activity, contain amino acid sequences with the following typical features: (1) residues in positions 117 and 167 with side-chains capable of forming cross-linkages such as disulfide, lactam, lactone, dicarba-cystine and the like; (2) an amphipathic alpha-helix spanning about 15-25 C-terminal residues; (3) a preferred but optional amphipathic alpha-helix N-terminal to the Cys 117 or equivalent residue, spanning about 15-25 residues; (4) a loop supported by at least one helical scaffold and at least one covalent cross-linkage.
  • OBF containing one additional cross-linkage between the C-terminal alpha-helix and either the loop or the N-terminal alpha-helix, if present are specifically contemplated to be within the scope of the present invention.
  • the present invention specifically contemplates polypeptides that are at least 30% homologous to the polypeptides of SEQ.ID.NO.:1 , SEQ.ID.N0.2, SEQ.ID.NO.:3, or SEQ.ID.NO. :4, preferably at least 50% homologous, more preferably at least 80% homologous, and most preferably at least 90% homologous.
  • Residues 117 and 167 are preferably cross-linked via covalent bonds such as disulfide, lactam, lactone, dicarba-cystine and the like.
  • the OBF preferably has cysteine residues at positions 117 and 167 which are preferably cross-linked via disulfide bonds.
  • the N- terminus of such fragments is typically blocked with an acetyl or similar N-blocking group.
  • OBF can be prepared by chemical synthesis using the following exemplary process:
  • NMP N- methylpyrrolidinone
  • DMF dimethylformamide
  • a coupling reagent such as 2-(1 H-benzotriazol-1 -yl)-1 , 1 ,3,3- tetramethyluronium hexafluorophate (HBTU) and 1-hydroxybenzotriazole (HOBt) in NMP and diisopropylethylamine (DIEA) at about 20 to 30 °C in a molar ratio of about 1: 5 compound l:ll to form a resin-coupled dipeptide (III)
  • a coupling reagent such as 2-(1 H-benzotriazol-1 -yl)-1 , 1 ,3,3- tetramethyluronium hexafluorophate (HBTU) and 1-hydroxybenzotriazole (HOBt) in NMP and diisopropylethylamine (DIEA) at about 20 to 30 °C in a molar ratio of about 1: 5 compound l:ll to form a resin-coupled dipeptide (III)
  • P 1 is an amino-protecting group such as flourenylmethoxycarbonyl (Fmoc) and P 2 is a para-alkoxybenzyl ester linkage.
  • the reaction may be effected with an automated peptide synthesizer (e.g., Applied Biosystems 431A or 433A.).
  • the foregoing procedure for peptide III is repeated with other nitrogen-protected and side-chain protected amino acids until all desired residues, e.g.,of SEQ. ID. NO. 1 or SEQ. ID. NO. 2, have been coupled to the resin.
  • Sidechain-protecting groups may be used in this process for sidechains having reactive functionalities, such as hydroxyl, carboxyl, amino, mercapto, guanidino, imidazolyl, indolyl and the like.
  • reactive functionalities such as hydroxyl, carboxyl, amino, mercapto, guanidino, imidazolyl, indolyl and the like.
  • the particular protecting groups used for any amino acid residues depend upon the sidechains to be protected and are generally in the art.
  • Exemplary sidechain protecting groups are t-butyl, benzyl, benzoyl, acetyl, halocarbobenzoxy, and the like for hydroxyl; cyclohexyl, benzyl, methyl, ethyl, f-butyl and the like for carboxyl; benzyl, 4-methylbenzyl, 4-methoxybenzyl, acetyl, acetamidomethyl, triphenylmethyl (trityl), and the like for mercapto; i- butyloxycarbonyl (Boc), carbobenzoxy (Cbz), halocarbobenzoxy, 9- flourenylmethoxycarbonyl (Fmoc), phthaloyl (Pht), p-toluenesulfonyl (Tos), trifluoroacetyl, 2-(trimethylsiiyl)ethoxycarbonyl (Teoc), and the like for amino; 2,4
  • Side chain protecting groups may be removed, if desired, by treatment with one or more deprotecting agents in an inert solvent or solvent mixture (e.g., NMP or DMF).
  • Suitable deprotecting agents are generally known in the art. Exemplary deprotecting agents are thiophenol, mercaptoethanol and the like for removing 2,4- dinitrophenyl; trifluoroacetic acid (TFA) and the like for butoxycarbonyl; hydrofluoric acid (HF), trifluoromethanesulfonic acid (TFMSA) and the like for several different protecting groups.
  • TFA trifluoroacetic acid
  • HF hydrofluoric acid
  • TFMSA trifluoromethanesulfonic acid
  • the fully formed polypeptide may be cleaved from the resin by methods generally known in the art.
  • the resin-bound polypeptide may be treated with an acid, such as TFA, HF, TFMSA, and the like.
  • Cross-linkage of the two cysteine residues via disulfide bond may be effected by methods generally known in the art.
  • the deprotected peptide may be stirred overnight in 0.1 M ammonium bicarbonate (pH 7.8) or in dilute ammonium hydroxide (pH 8.0-8.5) in the presence or not of 10% dimethylsulfoxide.
  • the crude peptide may be dissolved in a solution of water/acetonitrileTFA (60:40:0.1, v:v:v) and loaded onto a C18 reverse phase column.
  • a gradient of acetonitrile in water, both buffered with 0.1% TFA, can then be used to elute the desired OBF.
  • OBF also can be prepared by use of genetic engineering techinques.
  • the process for genetically engineering the OBF coding sequence, for expression under a desired promoter, is facilitated through the cloning of genetic sequences which are capable of encoding OBF.
  • These cloning technologies can utilize techniques known in the art for construction of a DNA sequence encoding OBF, such as polymerase chain reaction technologies utilizing a OBF sequence to isolate the ob gene de novo , or polynucleotide synthesis methods to construct the nucleotide sequence using chemical methods. Expression of the cloned OBF DNA provides OBF.
  • genetic sequences is intended to refer to a nucleic acid molecule (preferably DNA). Genetic sequences that are capable of being operably linked to DNA encoding OBF, so as to provide for its expression and maintenance in a host cell, are obtained from a variety of sources, including commercial sources, genomic DNA, cDNA, synthetic DNA, and combinations thereof. Since the genetic code is universal, it is to be expected that any DNA encoding the OBF amino acid sequence of the invention will be useful to express OBF in any host, including prokaryotic (bacterial) and eukaryotic (plants, mammals (especially human), insects, yeast, and especially cultured cell populations).
  • prokaryotic bacterial
  • eukaryotic plants, mammals (especially human), insects, yeast, and especially cultured cell populations.
  • mice DNA sequence encoding OBF is SEQ.ID.NO.:5 as follows: CCTGGAGAATCTCCGAGACCTCCTCCATCTGCTGGCCTTCTCCAAGA GCTGCTCCGCCTCAGACCAGTGGCCTGCAGAAGCCAGAGAGCCTGGA TGGCGTCCTGGAAGCCTCACTCTACTCCACAGAGGTGGTGGCTTTGA GCAGGCTGCAGGGCTCTCTGCAGGACATTCTTCAACAGTTGGATGTT AGCCCTGAATG
  • mice DNA sequence encoding OBF is SEQ.ID.NO.:6 as follows: CTCCAAGAGCTGCTCCGCCTCAGACCAGTGGCCTGCAGAAGCCAGAG AGCCTGGATGGCGTCCTGGAAGCCTCACTCTACTCCACAGAGGTGGT GGCTTTGAGCAGGCTGCAGGGCTCTCTCTGCAGGACATTCTTCAACAGT TGGATGTTAGCCCTGAATG
  • An example of human DNA sequence encoding OBF is SEQ.ID.N0.7 as follows: CTGGAGAACCTCCGGGATCTTCTTCACGTGCTGGCCTTCT CTAAGAGCTGCCACTTGCCCTGGGCCAGTGGCCTGGAGACCTTGGAC AGCCTGGGGGGTGTCCTGGAAGCTTCAGGCTACTCCACAGAGGTGGT GGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTGGCAGC TGGACCTCAGCCCTGGGTGC TGGACCTCAGCCCTGGGTGC TGGACCTCAGCCCTGGGTGC TGGACCTCAGCCCTGGGT
  • SEQ.ID.NO.:8 Another example of human DNA sequence encoding OBF is SEQ.ID.NO.:8 as follows: TCTAAGAGCTGCCACTTGCCCTGGGCCAGTGGCCTGGAGACCTTGGA CAGCCTGGGGGGTGTCCTGGAAGCTTCAGGCTACTCCACAGAGGTGG TGGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTGGCAG CTGGACCTCAGCCCTGGGTGC
  • DNA sequences which encode the same amino acid sequences of SEQ.ID.NOS.: 1 ,2,3, and 4 may be used for the production of the OBF of the present invention.
  • allelic variations of these DNA and amino acid sequences naturally exist, of may be intentionally introduced using methods known in the art. These variations may be demonstrated by one or more amino acid acid differences in overall sequence, or by deletions, substitutions, insertions, inversions or additions of one or more amino acids in said sequence.
  • Such amino acid substitutions may be made, for example, on the basis of similarity in polarity, charge, solubility, hydrophobicity, hydrophilicity and/or the amphiphathic nature of the residues involved.
  • negatively charged amino acids include aspartic acid and glutamic acid; positively charged amino acids include lysine and agrginine; amino acids with uncharged polar head groups or nonpolar head groups having similar hydrophilicity values include the following: leucine, isoleucine, valine; glycine, alanine; asparagine, glutamine; serine, threonine; phenylalanine, tyrosine.
  • Other contemplated variations include salts and esters of the aforementioned polypeptides, as well as precursors of the aformentioned polypeptides, for example, precursors having N-terminal substitutions such as methionine, N-formylmethionine and leader sequences. All such variations are included within the scope of the pressent invention.
  • the present invention include DNA sequences that code for biologically active polypeptides of less than 68 amino acids and that are capable of hybridizing under stringent conditions to a sequence complementary to SEQ.ID.NOS.: 5, 6, 7, or 8.
  • Stringent hybridization conditions select for DNA sequences of greater than 30% homology, preferably greater than 85% or, more preferably, greater than 90% homology. Screening DNA under stringent conditions may be carried out according to the method described in Nature. 313: 402- 404 (1985).
  • the DNA sequences capable of hybridizing under stringent conditions with the DNA disclosed in the present application may be, for example, allelic variants of the disclosed DNA sequences, may be naturally present in the human or mouse but related to the disclosed DNA sequences, or may be derived from other animal sources.
  • the expression of the encoded OBF can occur through the transient (nonstable) expression of the introduced sequence.
  • the coding sequence is introduced on a DNA molecule, such as a closed circular or linear molecular that is capable of autonomous replication. If integration into the host chromosome is desired, it is preferable to use a linear molecule. If stable maintenance of OBF DNA is desired on an extrachromosomal element, then it is preferable to use a circular plasmid form, with appropriate plasmid element for autonomous replication in the desired host.
  • the desired gene construct providing DNA coding for OBF, and the necessary regulatory elements operably linked thereto, can be introduced into desired host cells by transformation, transfection, or any method capable of providing the construct to the cell.
  • a marker gene for the detection of a host cell that has accepted the OBF DNA can be on the same vector as the OBF DNA or on a separate construct for co-transformation with the OBF coding sequence construct into the host cell.
  • the nature of the vector will depend on the host organism. Suitable selection markers will depend upon the host cell.
  • the marker can provide biocide resistance, e.g, resistance to antibiotics, or heavy metals, such as copper, or the like.
  • Factors of importance in selecting a particular plasmid or viral vector include: the ease with which recipient cells that contain the vector can be recognized and selected from those recipient cells which do not contain the vector; the number of copies of the vector which are desired in a particular host; and whether it is desirable to be able to "shuttle" the vector between host cells or different species.
  • Oligonucleotide probes specific for the OBF sequence can be used to identify clones to OBF and can be designated de novo from the knowledge of the amino acid sequence of the protein as provided herein in SEQ.ID.NO.:1 or from the knowledge of the nucleic acid sequence of the DNA encoding such protein or of a related protein.
  • antibodies can be raised against OBF and used to identify the presence of unique protein determinants in transformants that express the desired cloned polypeptide.
  • a nucleic acid molecule, such as DNA is said to be "capable of expressing"
  • nucleic acid if that nucleic acid contains expression control sequences which contain transeriptional regulatory information and such sequences are "operably linked" to the OBF nucleotide sequence which encode the OBF polypeptide.
  • An operable linkage is a linkage in which a sequence is connected to a regulatory sequence (or sequences) in such a way as to place expression of the sequence under the influence or control of the regulatory sequence.
  • the two DNA sequences are a coding sequence and a promoter region sequence linked to the 5' end of the coding sequence, they are operably linked if induction of promoter function results in the transcription of mRNA encoding the desired protein and if the nature of the linkage between the two DNA sequences does not (1) result in the introduction of a frame-shift mutation, (2) interfere with the ability of the expression regulatory sequences to direct the expression of the protein, antisense RNA, or (3) interfere with the ability of the DNA template to be transcribed.
  • a promoter region is operably linked to a DNA sequence if the promoter is capable of effecting transcription of that DNA sequence.
  • the precise nature of the regulatory regions needed for gene expression can vary between species or cell types, but includes, as necessary, 5' non-transcribing and 5' non-translating (non-coding) sequences involved with initiation of transcription and translation respectively, such as the TATA box, capping sequence, CAAT sequence, and the like, with those elements necessary for the promoter sequence being provided by the promoters of the invention.
  • transeriptional control sequences can also include enhancer sequences or upstream activator sequences, as desired.
  • the vectors of the invention can further comprise other preferably linked regulatory elements such as DNA elements which confer antibiotic resistance, or origins of replication for maintenance of the vector in one or more host cells.
  • Expression of a protein in eukaryotic hosts such as a human cell requires the use of regulatory regions functional in such hosts.
  • a wide variety of transeriptional and translational regulatory sequences can be employed, depending upon the nature of the host.
  • these regulatory signals are associated in their native state with a particular gene which is capable of a high level of expression in the specific host cell, such as specific human tissue type.
  • control regions may or may not provide an initiator methionine (AUG) codon, depending on whether the cloned sequence contains such a methionine.
  • AUG initiator methionine
  • Such regions will, in general, include a promoter region sufficient to direct the initiation of RNA synthesis in the host cell.
  • the non-transcribed and/or non-translated regions 3' to the sequence coding for ob protein can be obtained by the above-described cloning methods.
  • the 3'-non-transcribed region of the native human obgene can be retained for its transeriptional termination regulatory sequence elements, or for those elements which direct polyadenylation in eukaryotic cells. Where the native expression control sequences signals do not function satisfactorily in a host cell, sequences functional in the host cell can be substituted.
  • a fusion production that contains a partial coding sequence (usually at the amino terminal end) of a first protein or small peptide and a second coding sequence (partial or complete) of OBF at the carboxyl end.
  • the coding sequence of the first protein can, for example, function as a signal sequence for secretion of OBF from the host cell.
  • Such first protein can also provide for tissue targeting or localization of OBF if it is to be made in one cell type in a multicellular organism and delivered to another cell type in the same organism.
  • Such fusion protein sequences can be designed with or without specific protease sites such that a desired peptide sequence is amenable to subsequent removal.
  • the expressed OBF can be isolated and purified from the medium of the host in accordance with conventional conditions, such as extraction, precipitation, ion exchange chromatography, size exclusion chromatography, affinity chromatography, high performance liquid chromatography on reverse phase, electrophoresis, or the like.
  • affinity purification with anti-OBF antibody can be used.
  • a polypeptide having the amino acid sequence of, for example,SEQ.ID.NO.:1 or SEQ.ID.NO.:2 can be made, or a shortened peptide of either of these sequences can be made, and used to raise antibodies using methods well known in the art. These antibodies can be used to affinity purify or quantitate OBF from any desired source.
  • the host cells can be collected by centrifugation, or with suitable buffers, lysed, and the protein isolated by the column chromatography, for example, on DEAE- cellulose, phosphocellulose, polyribocytidylc acid-agarose, hydroxyapatite or by electrophoresis or immunoprecipitation.
  • Mouse ob coding sequence can be amplified using the polymerase chain reaction (PCR) from mouse adipose tissue cDNA using synthetic oiigonucleotides corresponding to the 5' and 3' ends of the 501 nucleotide coding sequence (Friedman et al. Nature 372, 425-432 (1994)), and cloned into the £.
  • PCR polymerase chain reaction
  • coli expression vector pGEX- 2T (Pharmacia) to produce a C-terminal glutathione-S-transferase fusion protein coding sequence.
  • Further constructs could be made that would allow heterologous ob protein expression in baculovirus-infected insect cells, COS cells, 293 cells, and Saccaromyces cerevisia by cloning the above ob coding sequence into the vectors pVL1393, pCDNA1/amp, pCEP4 ⁇ , and a suitable Saccaromyces cerevisia vector, respectively. It is understood that although the following discussion is specifically directed to human patients, the teachings are also applicable to any animal which would benefit from pracitce of the methods of the invention.
  • OBF preferably of the formula SEQ. ID. NOS.: 1, 2, 3, or 4
  • SEQ. ID. NOS.: 1, 2, 3, or 4 may be used to reduce serum glucose and/or triglyceride levels in obese patients and type II diabetics.
  • Plasma glucose and triglyceride levels are significantly decreased in oblob mice, following infusion with OBF, relative to infusion with a control peptide.
  • the anti-diabetic effect is independent of an effect on food consumption.
  • the form of administration of OBF can be any form known in the pharmaceutical art.
  • the amount of OBF to be administered would depend in part on the age, weight, and general condition of the patient. Typically, a patient would be closely monitored by a physician who would determine if the dosage amount or regimen of OBF being administered was effective and well tolerated.
  • OBF would be administered either alone or admixed with a pharmaceutically acceptable carrier. Administration can be parenteral or enteral depending upon the dosage form and the needs of the patient.
  • the effective amount of OBF in either the anti-obesity or anti-diabetic methods of the invention is typically about 0.001 to about 1000 milligrams (mgs) per kilogram (kg) of body weight (wt) per day, preferably about 0.05 to about 50 mgs per kg of body weight per day. It is another advantage of the present invention that activity-retaining radioisotopes of OBF are easier to prepare than those of corresponding full length protein.
  • the OBF polypeptide defined by SEQ. ID. NOS.:1 , 2, 3, or 4 may be labeled with a radioisotope including radioactive iodo ( 125 l) or hydrogen ( 3 H) atoms.
  • labeling of the OBF polypeptide defined by SEQ. ID. NOS.:1, 2, 3, or 4 with radioactive iodo ( 125 l) atoms may be achieved by reaction with prelabeled Bolton-Hunter reagent.
  • a radiolabelled OBF e.g., the polypeptide defined by SEQ. ID. NOS.: 1, 2, 3, or 4
  • the present invention is also directed to a method of diagnosing obesity or diabetes or a predisposition to develop obesity or diabetes in an individual, said method comprising
  • step (d) comparing the first set of results from step (c) with with a second set of results obtained using similar monitoring in an individual not having OBF-associated obesity or diabetes;
  • the labelling can be any type of labelling known in the art such as radiolabelling, fluorescent labelling, biotinylation, and the like.
  • OBF of the present invention may also be used to prepare in a known manner polyclonal or monoclonal antibodies capable of binding the OBF. These antibodies may in turn be used for the detection of the ob protein in a sample, for example, a plasma sample or cell sample, using immunoassay techniques, for example, radioimmunoassay or enzyme immunoassay. The antibodies may also be used in affinity chromatography for purifying OBF or ob protein and isolating it from various sources.
  • the present invention is also directed to a method of diagnosing obesity or diabetes or a predisposition to develop obesity or diabetes in an individual, said method comprising (a) raising antibodies to OBF in a suitable mammal such as mouse, rabbit, horse.etc,
  • SEQ. ID. NO.-.1 N-Acetyl-L-leucyl-L- ⁇ -glutamyl-L-asparaginyl-L-leucyl-L-arginyl-L- ⁇ -aspartyl-L- leucyl-L-leucyl-L-histidyl-L-leucyl-L-leucyl-L-alanyl-L-phenylalanyl-L-seryl-L-lysyl-L- seryl-L-cysteinyl-L-seryl-L-leucyl-L-prolyl-L-glutaminyl-L-threonyl-L-serylglycyl-L- leucyl-L-glutaminyl-L-lysyl-L-prolyl-L- ⁇ -glutamyl-L-seryl-L-leucyl-L- ⁇ -a
  • a protected peptide ("intermediate A") of SEQ.ID.NO.:1 was assembled stepwise by the solid phase method on an Applied Biosystems Model 431 A Peptide Synthesizer using the Fmoc/HBTU/HOBt program supplied with the instrument.
  • the starting Fmoc-Cys(Trt)-HMP resin polystyrene, 1% divinylbenzene copolymer
  • Amino acids were coupled as their N ⁇ -Fmoc derivatives.
  • the side chains of Ser, Thr and Tyr were protected with the t-butyl group; those of Cys, Asn, His and Gin with the trityl group, those of Asp and Glu with the t-butyl ester group, that of Arg with the 2,2,5,7,8- pentamethylchroman-6-sulfonyl (PMC) group and that of Lys with the N ⁇ -t- butyloxycarbonyl (t-Boc) group. Fmoc groups were removed at each cycle by a 6 min treatment with 20% piperidine in NMP.
  • Each amino acid derivative was double coupled (25 min, room temperature), in 5-fold molar excess, using one equivalent of 2- (1H-benzotriazol-1-yl)-1 ,1,3,3-tetramethyluronium hexafluorophate (HBTU) and 1- hydroxybenzotriazole (HOBt) in NMP and DIEA.
  • HBTU 2- (1H-benzotriazol-1-yl)-1 ,1,3,3-tetramethyluronium hexafluorophate
  • HOBt 1- hydroxybenzotriazole
  • Example 1 As a white, fluffy solid.
  • a protected peptide ("intermediate B") of SEQ.ID.NO.:3 was assembled stepwise by the solid phase method on an Applied Biosystems Model 431 A Peptide Synthesizer using the Fmoc/HBTU/HOBt program supplied with the instrument.
  • the starting Fmoc-Cys(Trt)-HMP resin polystyrene, 1% divinylbenzene copolymer
  • Amino acids were coupled as their N ⁇ -Fmoc derivatives.
  • the side chains of Ser, Thr and Tyr were protected with the t-butyl group; those of Cys and Gin with the trityl group, those of Asp and Glu with the t-butyl ester group, that of Arg with the 2,2,5,7,8- pentamethylchroman-6-sulfonyl (PMC) group and that of Lys with the N ⁇ -t- butyloxycarbonyl (t-Boc) group.
  • Fmoc groups were removed at each cycle by a 6 min treatment with 20% piperidine in NMP.
  • Each amino acid derivative was double coupled (25 min, room temperature), in 5-fold molar excess, using one equivalent of 2- (1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophate (HBTU) and 1- hydroxybenzotriazole (HOBt) in NMP and DIEA.
  • HBTU 2- (1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophate
  • HOBt 1- hydroxybenzotriazole
  • Example 2 The fractions containing the major peak (215 nm) eluting between 27 and 30 min were pooled and lyophilized to yield 16 mg (20%) of Example 2 as a white, fluffy solid.
  • Analytical HPLC of the above-prepared OBF Vydac C18 (4.6 x 250 mm); 215 nm, 1.0 mlJmin: linear gradient from 35% to 45% B in A over 50 minutes; retention time 30.63 minutes. Purity: greater than 95% (Solvent A, 0.1% TFA in water; Solvent B, 0.1% TFA in acetonitrile). MS (electrospray): found molecular weight (derived) 5788.6.
  • the OBFs can be expressed in £ coli as maltose binding fusion proteins (MBP) using an expression vector from New England Biolabs (pMALTM-c, 1990).
  • MBP maltose binding fusion proteins
  • the OBFs are ampified by PCR and cloned as Asp718/Sal I fragments by replacing most of the multiple cloning site and the factor Xa site of this vector.
  • a two-step PCR protocol is used to simultaneously introduce a protease site (thrombin site) and a unique restriction enzyme site virtually anywhere within the OBFs.
  • thrombin site downstream of Asn 99 and simultaneously a BamHI restriction enzyme site (bold) are introduced, resulting in the following construction: 95 99 100
  • GAG AAT SEQ.ID.NO. :9
  • the DNA and protein sequences of the ob gene construct containing a thrombin site within the gene are given in the one-letter code.
  • the numbering refers to the amino acid numbering of the ob protein.
  • Bold is the recognition sequence for the BamHI restriction enzyme.
  • the DNA sequence in italic derives from the ob gene.
  • step 1a template full length ob gene primer MAspNN and Nov2rev
  • step 1b template full length ob gene primer Nov2for
  • step 2 templates products of PCR reactions 1a and 1b primers MAspNN and MSalCC
  • MAspNN 5 '- TCG GTA CCG GTG CCT ATC CAG AAA (SEQ.IN.NO. :11)
  • This system can be used for any modification within the gene by just changing the matching sequences in oiigonucleotides Nov2rev and Nov2for.
  • a second strategy to obtain the construct shown in figure 1 is as follows.
  • the ob gene is amplified as BamHI/Sal I fragment (using oiigonucleotides MBamNN 5'- GGATCC GTGCCTATCCAGAAA GTC (SEQ.ID.NO.:15) and MSalCC 5'-
  • mutagenesis vector system i.e. pALTER-1 from Promega, 1994.
  • the in vitro mutagenesis is performed as described by the manufacturer using the Nov2for oligonucleotide (see above).
  • the mutated ob gene is cloned into the pMALTM. c expression vector (New England Biolabs, 1990). This mutagenesis system also allows introduction of a thrombin site into the ob gene at any other location by changing the matching sequences in oligonucleotide Nov2for.
  • the cell pellet (from 1 to 1.5 L cell culture) is resuspended in 30 mL lysis buffer (10 mM MOPS/NaOH pH 6.0, 2 mM EDTA, 500 mM NaCl, protease inhibitors) in a homogenizer and lysed by french press (SLM Aminco 40k preparative cell, single run at 1200 PSI).
  • the lysis suspension is centrifuged (35 min, 35,000 rpm, Beckman 45TI rotor).
  • the fusion protein is in the supernatant and can be directly affinity purified on 800-21 amylose resin (Biolabs Inc.) following the manufacturer's instructions.
  • the protein is eluted in the lysis buffer containing 50 mM maltose.
  • the pH of the eluate is increased to pH 8-9 and bovine thrombin (Amour Pharmaceutical Compny) is added to 5 U/mg fusion protein.
  • the reaction is incubated for 30-40 min at RT and stopped with 1 mM benzamidine.
  • the OBFs are precipitated with 40% acetone, oxidized and further purified by reversed phase HPLC as described above.
  • mice Female obese (ob/ob) mice were obtained from Jackson Laboratory (Bar Harbor, ME) at 5-6 weeks of age. The animals were housed two per cage at 24°C with a 6 am to 6 pm light cycle. They were give ad lib access to water and powdered food (Purina 9F-5020) in food cups. Mice were acclimated for two weeks prior to implantation of the Alzet pumps.
  • Plasma chemistries were determined enzymatically using a Roche COBAS-MIRA S clinical analyzer. Plasma glucose and triglyceride levels were determined by an assay from Roche Diagnostics, Montclair, NJ; plasma non-esterified fatty acids (NEFA) levels were quantitated by an assay obtained from Wako Biochemicals, Wako, TX. Plasma insulin levels were determined by a radioimmunoassay (Incstar Corporation, Stillwater, MN), utilizing rat insulin as the standard. Plasma corticosterone levels were determined by a double antibody radioimmunoassay (ICN Biochemicals, Costa Mesa, CA) utilizing rat corticosterone as the standard.
  • BAT brown adipose tissue
  • Plasma TG (mg/dl) 101 ⁇ 4 81 ⁇ 6 * (-20%)
  • Plasma NEFA (mEq/L) 1.15 ⁇ 0.06 1.36 ⁇ 0.02" (+18%)
  • Plasma Insulin (ng/ml) 3.49 + 0.39 4.56 ⁇ 0.86

Abstract

Novel C-terminal fragments of the obese gene product. The fragments retain anti-obesity and/or anti-diabetic activities. The fragments contain less than 68 amino acids, two of which are capable of forming cross-linkages, preferably cysteines.

Description

POLYPEPTIDE FRAGMENTS DERIVED FROM THE OBESE GENE PRODUCT
The present invention concerns polypeptide fragments derived from the obese (ob) gene product and uses thereof. The mouse and human ob gene were recently identified by positional cloning and sequencing (Friedman et al. Nature 372, 425-432 (1994)). ob encodes a 4.5 kb adipose tissue messenger RNA containing a predicted 167-amino acid open reading frame (ORF). The predicted amino acid sequence is 84% identical between human and mouse and has features of a secreted protein. The extensive homology deduced for the ob gene product among vertebrates suggests that its function is highly conserved. On the basis of their genetic studies, Friedman and coworkers have speculated that the ob gene product may function as part of a signalling pathway from adipose tissue acting to regulate the size of the body fat depot. Preparation of the ob protein with high specific activity by a number of recombinant methods has proven difficult [Pelleymounter et al. Science 269, 540-543 (1995); Halaas et al. ibid.543-546],
It has been discovered that small polypeptide fragments of the ob gene product can be facilely prepared, retain biological activity, and overcome some of the drawbacks of the full length protein described in the prior art. The present invention is directed to polypeptide fragments of the obese gene product which have anti-obesity and/or anti-diabetic activity. These polypeptides will be referred to herein as the active obese gene product fragments or "OBF" which will be further defined hereinafter. The invention also includes therapeutic methods using OBF. Accordingly, in a first embodiment, the invention is directed to purified preparations of OBF. A preferred murine OBF has the sequence of SEQ.ID.NO.:1 as follows:
Leu-Glu-Asn-Leu-Arg-Asp-Leu-Leu-His-Leu-Leu-Ala-Phe-Ser-Lys-Ser-Cys-Ser-Leu- Pro-Gln-Thr-Ser-Gly-Leu-Gln-Lys-Pro-Glu-Ser-Leu-Asp-Gly-Val-Leu-Glu-Ala-Ser- Leu-Tyr-Ser-Thr-Glu-Val-Val-Ala-Leu-Ser-Arg-Leu-Gln-Gly-Ser-Leu-Gln-Asp-lle-Leu- Gln-Gln-Leu-Asp-Val-Ser-Pro-Glu-Cys, S,S-crosslinked A preferred human OBF has the sequence of SEQ.ID.NO.:2 as follows: Leu-Glu-Asn-Leu-Arg-Asp-Leu-Leu-His-Val-Leu-Ala-Phe-Ser-Lys-Ser-Cys-His-Leu- Pro-Trp-Ala-Ser-Gly-Leu-Glu-Thr-Leu-Asp-Ser-Leu-Gly-Gly-Val-Leu-Glu-Ala-Ser- Gly-Tyr-Ser-Thr-Glu-Val-Val-Ala-Leu-Ser-Arg-Leu-Gln-Gly-Ser-Leu-Gln-Asp-Met- Leu-Trp-Gln-Leu-Asp-Leu-Ser-Pro-Gly-Cys, S,S-crosslinked
Another preferred murine OBF has the sequence of SEQ.ID.NO.:3 as follows: Ser-Lys-Ser-Cys-Ser-Leu-Pro-Gln-Thr-Ser-Gly-Leu-Gln-Lys-Pro-Glu-Ser-Leu-Asp- Gly-Val-Leu-Glu-Ala-Ser-Leu-Tyr-Ser-Thr-Glu-Val-Val-Ala-Leu-Ser-Arg-Leu-Gln- Gly-Ser-Leu-Gln-Asp-lle-Leu-Gln-Gln-Leu-Asp-Val-Ser-Pro-Glu-Cys, S,S-crosslinked
Another preferred human OBF has the sequence of SEQ.ID.NO.:4 as follows: Ser-Lys-Ser-Cys-His-Leu-Pro-Trp-Ala-Ser-Gly-Leu-Glu-Thr-Leu-Asp-Ser-Leu-Gly- Gly-Val-Leu-Glu-Ala-Ser-Gly-Tyr-Ser-Thr-Glu-Val-Val-Ala-Leu-Ser-Arg-Leu-Gln- Gly-Ser-Leu-Gln-Asp-Met-Leu-Trp-Gln-Leu-Asp-Leu-Ser-Pro-Gly-Cys, S,S- crosslinked
In a further embodiment, the invention is directed to a method for treating obesity in a patient , wherein the obesity is related to a defect in regulation by the obese protein or can otherwise be overcome by elevating obese protein levels, the method comprising administering an effective amount of OBF to the patient.
In a further embodiment, the invention is directed to a method for treating diabetes in a patient in need of treatment, where the diabetes is obese protein - associated, the method comprising administering an effective amount of OBF to the patient. In a further embodiment, the invention is directed to a method for diagnosing obese protein-associated diabetes or obesity.
In a further embodiment, the invention is directed to an isolated nucleic acid sequence encoding OBF.
In a further embodiment, the invention is directed to a vector containing nucleic acid encoding OBF.
In a further embodiment, the invention is directed to a host cell transformed with the vector of the invention.
In a further embodiment, the invention is directed to a method for producing OBF from the recombinant host. Figure 1. Three dimensional representation of preferred OBF having 67 amino acids and three alpha helices. It has been discovered that fragments of the ob protein retaining biological activity and accessible by chemical synthesis overcome some of the drawbacks of the full length protein. Specifically, it has been found by secondary structure analysis and molecular modeling that the C-terminal peptide fragments containing the only two cysteine residues present in the mature ob protein, which are preferably disulfide- linked (or functionally equivalent residues that are capable of forming cross-linkages), retains the conformation and overall folding needed for biological activity.
As used herein, the following terms have the indicated meanings: "therapeutic methods" means the anti-obesity and/or the anti-diabetic methods of the invention; "OBF" means the optionally mutated or modified biologically active C-terminal fragments of the ob gene product having less than sixty-eight amino acids and containing two residues at positions 117 and 167 that are capable of forming cross¬ linkages , preferably cysteine residues; "obese protein-associated" means that the obesity and or diabetes is partially or wholly due to mutations of the ob gene or any alteration or defect in the ob gene product or metabolic pathway(s) involving the ob gene product resulting in increased risk or clinical manifestation of obesity and/or diabetes; "biologically active" means having serum glucose lowering activity useful for treating type II diabetes; or serum triglyceride lowering activity, or decreased body weight gain, or decreased body weight, or reduction in food consumption or appetite useful for treating obesity.
OBF preferably has 67 amino acids and most preferably has the amino acid sequence identified as SEQ. ID. NO:1 or SEQ.ID.NO.:2; however, other biologically active C-terminal fragments of the ob gene product having less than 68 amino acids are also specifically contemplated to be within the scope of the present invention. The amino acid numbering scheme used herein is based on the intact ob protein and is the same as described by Friedman and coworkers in Nature 372, 425-432 (1994). Such fragments of the invention, which include mutants or modified fragments that retain biological activity, contain amino acid sequences with the following typical features: (1) residues in positions 117 and 167 with side-chains capable of forming cross-linkages such as disulfide, lactam, lactone, dicarba-cystine and the like; (2) an amphipathic alpha-helix spanning about 15-25 C-terminal residues; (3) a preferred but optional amphipathic alpha-helix N-terminal to the Cys 117 or equivalent residue, spanning about 15-25 residues; (4) a loop supported by at least one helical scaffold and at least one covalent cross-linkage. OBF containing one additional cross-linkage between the C-terminal alpha-helix and either the loop or the N-terminal alpha-helix, if present are specifically contemplated to be within the scope of the present invention. The present invention specifically contemplates polypeptides that are at least 30% homologous to the polypeptides of SEQ.ID.NO.:1 , SEQ.ID.N0.2, SEQ.ID.NO.:3, or SEQ.ID.NO. :4, preferably at least 50% homologous, more preferably at least 80% homologous, and most preferably at least 90% homologous. Residues 117 and 167 are preferably cross-linked via covalent bonds such as disulfide, lactam, lactone, dicarba-cystine and the like. The OBF preferably has cysteine residues at positions 117 and 167 which are preferably cross-linked via disulfide bonds. In addition, the N- terminus of such fragments is typically blocked with an acetyl or similar N-blocking group. OBF can be prepared by chemical synthesis using the following exemplary process:
A resin-coupled carboxyl terminal residue (I)
I pi-Al67.p2.resin
is treated with a deprotecting agent (e.g., piperidine) in an organic solvent such as N- methylpyrrolidinone (NMP) or dimethylformamide (DMF); where A167 is Cys or equivalent residue. The resulting deprotected peptidyl-resin is coupled with the N-α- protected amino acid (II)
II P1-Aaa-OH
in the presence of a coupling reagent such as 2-(1 H-benzotriazol-1 -yl)-1 , 1 ,3,3- tetramethyluronium hexafluorophophate (HBTU) and 1-hydroxybenzotriazole (HOBt) in NMP and diisopropylethylamine (DIEA) at about 20 to 30 °C in a molar ratio of about 1: 5 compound l:ll to form a resin-coupled dipeptide (III)
II Pi-Aaa-A167--p2-resjn.
In compounds I through III and throughout this specification, P1 is an amino-protecting group such as flourenylmethoxycarbonyl (Fmoc) and P2 is a para-alkoxybenzyl ester linkage. The reaction may be effected with an automated peptide synthesizer (e.g., Applied Biosystems 431A or 433A.). The foregoing procedure for peptide III is repeated with other nitrogen-protected and side-chain protected amino acids until all desired residues, e.g.,of SEQ. ID. NO. 1 or SEQ. ID. NO. 2, have been coupled to the resin. Sidechain-protecting groups may be used in this process for sidechains having reactive functionalities, such as hydroxyl, carboxyl, amino, mercapto, guanidino, imidazolyl, indolyl and the like. The particular protecting groups used for any amino acid residues depend upon the sidechains to be protected and are generally in the art. Exemplary sidechain protecting groups are t-butyl, benzyl, benzoyl, acetyl, halocarbobenzoxy, and the like for hydroxyl; cyclohexyl, benzyl, methyl, ethyl, f-butyl and the like for carboxyl; benzyl, 4-methylbenzyl, 4-methoxybenzyl, acetyl, acetamidomethyl, triphenylmethyl (trityl), and the like for mercapto; i- butyloxycarbonyl (Boc), carbobenzoxy (Cbz), halocarbobenzoxy, 9- flourenylmethoxycarbonyl (Fmoc), phthaloyl (Pht), p-toluenesulfonyl (Tos), trifluoroacetyl, 2-(trimethylsiiyl)ethoxycarbonyl (Teoc), and the like for amino; 2,4- dinitrophenyl, benzyloxymethyl, Tos, Boc, trityl, and the like for imidazolyl; Cbz, Teoc, 2,2,2-trichloroethyl carbamate (Troc), formyl, and the like, or no protection, for indolyl; and 2,2,5,7,8-pentamethylchroman-6-sulfonyl (Pmc), 4-methoxy-2,3,6- trimethylbenzenesulfonyl (Mtr), Tos, nitro, bis-(l-adamantyloxycarbonyl) and the like for guanidino.
Side chain protecting groups may be removed, if desired, by treatment with one or more deprotecting agents in an inert solvent or solvent mixture (e.g., NMP or DMF). Suitable deprotecting agents are generally known in the art. Exemplary deprotecting agents are thiophenol, mercaptoethanol and the like for removing 2,4- dinitrophenyl; trifluoroacetic acid (TFA) and the like for butoxycarbonyl; hydrofluoric acid (HF), trifluoromethanesulfonic acid (TFMSA) and the like for several different protecting groups. For furhter examples of protecting groups and suitable deprotecting agents, see Bodansky, M. and Bodansky, A., The Practice of Peptide Synthesis. Springer-Verlag, Inc. (1984); and Greene, T. W. and Wuts, P., Protective Groups in Organic Synthesis (2nd ed.), John Wiley & Sons, Inc. (1991).
The fully formed polypeptide may be cleaved from the resin by methods generally known in the art. For example, the resin-bound polypeptide may be treated with an acid, such as TFA, HF, TFMSA, and the like.
Cross-linkage of the two cysteine residues via disulfide bond may be effected by methods generally known in the art. For example, the deprotected peptide may be stirred overnight in 0.1 M ammonium bicarbonate (pH 7.8) or in dilute ammonium hydroxide (pH 8.0-8.5) in the presence or not of 10% dimethylsulfoxide.
Purification of the OBF can be effected by methods generally known in the art. For example, the crude peptide may be dissolved in a solution of water/acetonitrileTFA (60:40:0.1, v:v:v) and loaded onto a C18 reverse phase column. A gradient of acetonitrile in water, both buffered with 0.1% TFA, can then be used to elute the desired OBF.
OBF also can be prepared by use of genetic engineering techinques. The process for genetically engineering the OBF coding sequence, for expression under a desired promoter, is facilitated through the cloning of genetic sequences which are capable of encoding OBF. These cloning technologies can utilize techniques known in the art for construction of a DNA sequence encoding OBF, such as polymerase chain reaction technologies utilizing a OBF sequence to isolate the ob gene de novo , or polynucleotide synthesis methods to construct the nucleotide sequence using chemical methods. Expression of the cloned OBF DNA provides OBF.
As used herein, the term "genetic sequences" is intended to refer to a nucleic acid molecule (preferably DNA). Genetic sequences that are capable of being operably linked to DNA encoding OBF, so as to provide for its expression and maintenance in a host cell, are obtained from a variety of sources, including commercial sources, genomic DNA, cDNA, synthetic DNA, and combinations thereof. Since the genetic code is universal, it is to be expected that any DNA encoding the OBF amino acid sequence of the invention will be useful to express OBF in any host, including prokaryotic (bacterial) and eukaryotic (plants, mammals (especially human), insects, yeast, and especially cultured cell populations).
An example of mouse DNA sequence encoding OBF is SEQ.ID.NO.:5 as follows: CCTGGAGAATCTCCGAGACCTCCTCCATCTGCTGGCCTTCTCCAAGA GCTGCTCCGCCTCAGACCAGTGGCCTGCAGAAGCCAGAGAGCCTGGA TGGCGTCCTGGAAGCCTCACTCTACTCCACAGAGGTGGTGGCTTTGA GCAGGCTGCAGGGCTCTCTGCAGGACATTCTTCAACAGTTGGATGTT AGCCCTGAATG
Another example of mouse DNA sequence encoding OBF is SEQ.ID.NO.:6 as follows: CTCCAAGAGCTGCTCCGCCTCAGACCAGTGGCCTGCAGAAGCCAGAG AGCCTGGATGGCGTCCTGGAAGCCTCACTCTACTCCACAGAGGTGGT GGCTTTGAGCAGGCTGCAGGGCTCTCTGCAGGACATTCTTCAACAGT TGGATGTTAGCCCTGAATG An example of human DNA sequence encoding OBF is SEQ.ID.N0.7 as follows: CTGGAGAACCTCCGGGATCTTCTTCACGTGCTGGCCTTCT CTAAGAGCTGCCACTTGCCCTGGGCCAGTGGCCTGGAGACCTTGGAC AGCCTGGGGGGTGTCCTGGAAGCTTCAGGCTACTCCACAGAGGTGGT GGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTGGCAGC TGGACCTCAGCCCTGGGTGC
Another example of human DNA sequence encoding OBF is SEQ.ID.NO.:8 as follows: TCTAAGAGCTGCCACTTGCCCTGGGCCAGTGGCCTGGAGACCTTGGA CAGCCTGGGGGGTGTCCTGGAAGCTTCAGGCTACTCCACAGAGGTGG TGGCCCTGAGCAGGCTGCAGGGGTCTCTGCAGGACATGCTGTGGCAG CTGGACCTCAGCCCTGGGTGC
Due to the degeneracy of the genetic code, other DNA sequences which encode the same amino acid sequences of SEQ.ID.NOS.: 1 ,2,3, and 4 may be used for the production of the OBF of the present invention. In addition, it will be understood that allelic variations of these DNA and amino acid sequences naturally exist, of may be intentionally introduced using methods known in the art. These variations may be demonstrated by one or more amino acid acid differences in overall sequence, or by deletions, substitutions, insertions, inversions or additions of one or more amino acids in said sequence. Such amino acid substitutions may be made, for example, on the basis of similarity in polarity, charge, solubility, hydrophobicity, hydrophilicity and/or the amphiphathic nature of the residues involved. For example, negatively charged amino acids include aspartic acid and glutamic acid; positively charged amino acids include lysine and agrginine; amino acids with uncharged polar head groups or nonpolar head groups having similar hydrophilicity values include the following: leucine, isoleucine, valine; glycine, alanine; asparagine, glutamine; serine, threonine; phenylalanine, tyrosine. Other contemplated variations include salts and esters of the aforementioned polypeptides, as well as precursors of the aformentioned polypeptides, for example, precursors having N-terminal substitutions such as methionine, N-formylmethionine and leader sequences. All such variations are included within the scope of the pressent invention.
It is specifically comtemplated that the present invention include DNA sequences that code for biologically active polypeptides of less than 68 amino acids and that are capable of hybridizing under stringent conditions to a sequence complementary to SEQ.ID.NOS.: 5, 6, 7, or 8. Stringent hybridization conditions select for DNA sequences of greater than 30% homology, preferably greater than 85% or, more preferably, greater than 90% homology. Screening DNA under stringent conditions may be carried out according to the method described in Nature. 313: 402- 404 (1985). The DNA sequences capable of hybridizing under stringent conditions with the DNA disclosed in the present application may be, for example, allelic variants of the disclosed DNA sequences, may be naturally present in the human or mouse but related to the disclosed DNA sequences, or may be derived from other animal sources. General techniques of nucleic acid hybridization are disclosed by Maniatis, T. et al., In: Molecular Cloning, a Laboratory Manual. Cold Spring Harbor, N.Y. (19820, and by Haymes, B.D. et al., In: Nucleic Acid Hybridization, a Practical Approach. IRL Press, Washington, D.C. (1985), which references are incorporated herein by reference.
When the OBF DNA coding sequence and an operably linked promoter are introduced into a recipient eukaryotic cell (preferably a human host cell) as a non- replicating, non-integrating, molecule, the expression of the encoded OBF can occur through the transient (nonstable) expression of the introduced sequence.
Preferably the coding sequence is introduced on a DNA molecule, such as a closed circular or linear molecular that is capable of autonomous replication. If integration into the host chromosome is desired, it is preferable to use a linear molecule. If stable maintenance of OBF DNA is desired on an extrachromosomal element, then it is preferable to use a circular plasmid form, with appropriate plasmid element for autonomous replication in the desired host.
The desired gene construct, providing DNA coding for OBF, and the necessary regulatory elements operably linked thereto, can be introduced into desired host cells by transformation, transfection, or any method capable of providing the construct to the cell. A marker gene for the detection of a host cell that has accepted the OBF DNA can be on the same vector as the OBF DNA or on a separate construct for co-transformation with the OBF coding sequence construct into the host cell. The nature of the vector will depend on the host organism. Suitable selection markers will depend upon the host cell. For example, the marker can provide biocide resistance, e.g, resistance to antibiotics, or heavy metals, such as copper, or the like.
Factors of importance in selecting a particular plasmid or viral vector include: the ease with which recipient cells that contain the vector can be recognized and selected from those recipient cells which do not contain the vector; the number of copies of the vector which are desired in a particular host; and whether it is desirable to be able to "shuttle" the vector between host cells or different species.
Oligonucleotide probes specific for the OBF sequence can be used to identify clones to OBF and can be designated de novo from the knowledge of the amino acid sequence of the protein as provided herein in SEQ.ID.NO.:1 or from the knowledge of the nucleic acid sequence of the DNA encoding such protein or of a related protein. Alternatively, antibodies can be raised against OBF and used to identify the presence of unique protein determinants in transformants that express the desired cloned polypeptide. A nucleic acid molecule, such as DNA, is said to be "capable of expressing"
OBF if that nucleic acid contains expression control sequences which contain transeriptional regulatory information and such sequences are "operably linked" to the OBF nucleotide sequence which encode the OBF polypeptide.
An operable linkage is a linkage in which a sequence is connected to a regulatory sequence (or sequences) in such a way as to place expression of the sequence under the influence or control of the regulatory sequence. If the two DNA sequences are a coding sequence and a promoter region sequence linked to the 5' end of the coding sequence, they are operably linked if induction of promoter function results in the transcription of mRNA encoding the desired protein and if the nature of the linkage between the two DNA sequences does not (1) result in the introduction of a frame-shift mutation, (2) interfere with the ability of the expression regulatory sequences to direct the expression of the protein, antisense RNA, or (3) interfere with the ability of the DNA template to be transcribed. Thus, a promoter region is operably linked to a DNA sequence if the promoter is capable of effecting transcription of that DNA sequence.
The precise nature of the regulatory regions needed for gene expression can vary between species or cell types, but includes, as necessary, 5' non-transcribing and 5' non-translating (non-coding) sequences involved with initiation of transcription and translation respectively, such as the TATA box, capping sequence, CAAT sequence, and the like, with those elements necessary for the promoter sequence being provided by the promoters of the invention. Such transeriptional control sequences can also include enhancer sequences or upstream activator sequences, as desired.
The vectors of the invention can further comprise other preferably linked regulatory elements such as DNA elements which confer antibiotic resistance, or origins of replication for maintenance of the vector in one or more host cells. Expression of a protein in eukaryotic hosts such as a human cell requires the use of regulatory regions functional in such hosts. A wide variety of transeriptional and translational regulatory sequences can be employed, depending upon the nature of the host. Preferably, these regulatory signals are associated in their native state with a particular gene which is capable of a high level of expression in the specific host cell, such as specific human tissue type. In eukaryotes, where transcription is not linked to translation, such control regions may or may not provide an initiator methionine (AUG) codon, depending on whether the cloned sequence contains such a methionine. Such regions will, in general, include a promoter region sufficient to direct the initiation of RNA synthesis in the host cell.
If desired, the non-transcribed and/or non-translated regions 3' to the sequence coding for ob protein can be obtained by the above-described cloning methods. The 3'-non-transcribed region of the native human obgene can be retained for its transeriptional termination regulatory sequence elements, or for those elements which direct polyadenylation in eukaryotic cells. Where the native expression control sequences signals do not function satisfactorily in a host cell, sequences functional in the host cell can be substituted.
It may be desired to construct a fusion production that contains a partial coding sequence (usually at the amino terminal end) of a first protein or small peptide and a second coding sequence (partial or complete) of OBF at the carboxyl end. The coding sequence of the first protein can, for example, function as a signal sequence for secretion of OBF from the host cell. Such first protein can also provide for tissue targeting or localization of OBF if it is to be made in one cell type in a multicellular organism and delivered to another cell type in the same organism. Such fusion protein sequences can be designed with or without specific protease sites such that a desired peptide sequence is amenable to subsequent removal.
The expressed OBF can be isolated and purified from the medium of the host in accordance with conventional conditions, such as extraction, precipitation, ion exchange chromatography, size exclusion chromatography, affinity chromatography, high performance liquid chromatography on reverse phase, electrophoresis, or the like. For example, affinity purification with anti-OBF antibody can be used. A polypeptide having the amino acid sequence of, for example,SEQ.ID.NO.:1 or SEQ.ID.NO.:2 can be made, or a shortened peptide of either of these sequences can be made, and used to raise antibodies using methods well known in the art. These antibodies can be used to affinity purify or quantitate OBF from any desired source. If it is necessary to extract OBF from the intracellular regions of the host cells, the host cells can be collected by centrifugation, or with suitable buffers, lysed, and the protein isolated by the column chromatography, for example, on DEAE- cellulose, phosphocellulose, polyribocytidylc acid-agarose, hydroxyapatite or by electrophoresis or immunoprecipitation.
It is to be understood that all of the above procedures that are applicable to cloning and expressing OBF sequences apply equally to normal and mutant sequences. Mutations may be in any of the regions, i.e., coding, non-coding, exonic, intronic, regulatory and the like. Mouse ob coding sequence can be amplified using the polymerase chain reaction (PCR) from mouse adipose tissue cDNA using synthetic oiigonucleotides corresponding to the 5' and 3' ends of the 501 nucleotide coding sequence (Friedman et al. Nature 372, 425-432 (1994)), and cloned into the £. coli expression vector pGEX- 2T (Pharmacia) to produce a C-terminal glutathione-S-transferase fusion protein coding sequence. Further constructs could be made that would allow heterologous ob protein expression in baculovirus-infected insect cells, COS cells, 293 cells, and Saccaromyces cerevisia by cloning the above ob coding sequence into the vectors pVL1393, pCDNA1/amp, pCEP4β, and a suitable Saccaromyces cerevisia vector, respectively. It is understood that although the following discussion is specifically directed to human patients, the teachings are also applicable to any animal which would benefit from pracitce of the methods of the invention.
In the methods of treating obesity and/or diabetes in a patient in need of such treatment, OBF, preferably of the formula SEQ. ID. NOS.: 1, 2, 3, or 4, may be used to reduce serum glucose and/or triglyceride levels in obese patients and type II diabetics. Plasma glucose and triglyceride levels are significantly decreased in oblob mice, following infusion with OBF, relative to infusion with a control peptide. The anti-diabetic effect is independent of an effect on food consumption.
In the therapeutic methods of the invention, the form of administration of OBF can be any form known in the pharmaceutical art. The amount of OBF to be administered would depend in part on the age, weight, and general condition of the patient. Typically, a patient would be closely monitored by a physician who would determine if the dosage amount or regimen of OBF being administered was effective and well tolerated. OBF would be administered either alone or admixed with a pharmaceutically acceptable carrier. Administration can be parenteral or enteral depending upon the dosage form and the needs of the patient. The effective amount of OBF in either the anti-obesity or anti-diabetic methods of the invention is typically about 0.001 to about 1000 milligrams (mgs) per kilogram (kg) of body weight (wt) per day, preferably about 0.05 to about 50 mgs per kg of body weight per day. It is another advantage of the present invention that activity-retaining radioisotopes of OBF are easier to prepare than those of corresponding full length protein. For example, the OBF polypeptide defined by SEQ. ID. NOS.:1 , 2, 3, or 4 may be labeled with a radioisotope including radioactive iodo (125l) or hydrogen (3H) atoms. Alternatively, labeling of the OBF polypeptide defined by SEQ. ID. NOS.:1, 2, 3, or 4 with radioactive iodo (125l) atoms may be achieved by reaction with prelabeled Bolton-Hunter reagent. Thus, by monitoring of the radioactive polypeptide, cells could be diagnosed for the presence of cellular components that bind the polypeptide. Furthermore, a radiolabelled OBF (e.g., the polypeptide defined by SEQ. ID. NOS.: 1, 2, 3, or 4) is useful for the cloning and expression of the ob protein receptor. Accordingly, the present invention is also directed to a method of diagnosing obesity or diabetes or a predisposition to develop obesity or diabetes in an individual, said method comprising
(a) labelling OBF;
(b) contacting the labelled OBF with biological material from said individual;
(c) monitoring the biological material for the presence of bound OBF to obtain a first set of results;
(d) comparing the first set of results from step (c) with with a second set of results obtained using similar monitoring in an individual not having OBF-associated obesity or diabetes; and
(e) diagnosing the presence of obesity or diabetes in said individual or the tendency of said individual to develop obesity or diabetes by comparing the first set of results and second set of results to determine if the results differ. The labelling can be any type of labelling known in the art such as radiolabelling, fluorescent labelling, biotinylation, and the like.
OBF of the present invention may also be used to prepare in a known manner polyclonal or monoclonal antibodies capable of binding the OBF. These antibodies may in turn be used for the detection of the ob protein in a sample, for example, a plasma sample or cell sample, using immunoassay techniques, for example, radioimmunoassay or enzyme immunoassay. The antibodies may also be used in affinity chromatography for purifying OBF or ob protein and isolating it from various sources. Thus the present invention is also directed to a method of diagnosing obesity or diabetes or a predisposition to develop obesity or diabetes in an individual, said method comprising (a) raising antibodies to OBF in a suitable mammal such as mouse, rabbit, horse.etc,
(b) contacting said antibodies with a test biological sample and allowing the antibody to bind to the sample;
(c) measuring the amount of antibody bound to the sample; (d) repeating steps (b) and (c) using a standard having a known affinity to the antibodies instead of the test sample; (e) comparing the results using the test sample with the results using the standard to determine the amount of antibodies bound to the test sample relative to the amount of antibodies bound to the standard.
The manner and method of carrying out the present invention can be more fully understood by those of skill by reference to the following examples, which examples are not intended in any manner to limit the scope of the present invention or of the claims directed thereto.
Example 1 Process of Preparation
SEQ. ID. NO.-.1 N-Acetyl-L-leucyl-L-α-glutamyl-L-asparaginyl-L-leucyl-L-arginyl-L-α-aspartyl-L- leucyl-L-leucyl-L-histidyl-L-leucyl-L-leucyl-L-alanyl-L-phenylalanyl-L-seryl-L-lysyl-L- seryl-L-cysteinyl-L-seryl-L-leucyl-L-prolyl-L-glutaminyl-L-threonyl-L-serylglycyl-L- leucyl-L-glutaminyl-L-lysyl-L-prolyl-L-α-glutamyl-L-seryl-L-leucyl-L-α-aspartylglycyl- L-valyl-L-leucyl-L-α-glutamyl-L-alanyl-L-seryl-L-leucyl-L-tyrosyl-L-seryl-L-threonyl-L- α-glutamyl-L-valyl-L-valyl-L-alanyl-L-leucyl-L-seryl-L-arginyl-L-leucyl-L- glutaminylglycyl-L-seryl-L-leucyl-L-glutaminyl-L-α-aspartyl-L-isoleucyl-L-leucyl-L- glutaminyl-L-glutaminyl-L-leucyl-L-α-aspartyl-L-valyl-L-seryl-L-prolyl-L-α-glutamyl-L- cysteine, S,S-crosslinked
A protected peptide ("intermediate A") of SEQ.ID.NO.:1 was assembled stepwise by the solid phase method on an Applied Biosystems Model 431 A Peptide Synthesizer using the Fmoc/HBTU/HOBt program supplied with the instrument. The starting Fmoc-Cys(Trt)-HMP resin (polystyrene, 1% divinylbenzene copolymer) was purchased from Midwest Bio-Tech ( g, 0. mmol). Amino acids were coupled as their Nα-Fmoc derivatives. The side chains of Ser, Thr and Tyr were protected with the t-butyl group; those of Cys, Asn, His and Gin with the trityl group, those of Asp and Glu with the t-butyl ester group, that of Arg with the 2,2,5,7,8- pentamethylchroman-6-sulfonyl (PMC) group and that of Lys with the Nε-t- butyloxycarbonyl (t-Boc) group. Fmoc groups were removed at each cycle by a 6 min treatment with 20% piperidine in NMP. Each amino acid derivative was double coupled (25 min, room temperature), in 5-fold molar excess, using one equivalent of 2- (1H-benzotriazol-1-yl)-1 ,1,3,3-tetramethyluronium hexafluorophophate (HBTU) and 1- hydroxybenzotriazole (HOBt) in NMP and DIEA. After the final coupling, the N- terminal Fmoc group was removed as described above and the resulting peptidyl-resin was washed with NMP and treated twice with 1 -acetyl imidazole (550 mg, 5.0 mmol) in NMP (8 mL) for 25 min. The resulting 67 amino acid peptidyl-resin was washed with NMP and DCM and dried, yielding 1.095 g of A. Simultaneous deprotection and cleavage of the peptide (intermediate A) from the resin was accomplished by stirring the protected polypeptidyl-resin ( 1.095 g, 0.083 mmol) in 22 mL of CF3COOH/water/thioanisole/dithiothreitol/phenol
(10:0.5:0.6:1.0:0.8, v/v/v/w/w) for 3 hours at room temperature. The resin was removed by filtration and the filtrate was concentrated in vacuo. The crude product was precipitated with cold methyl t-butyl ether (MTBE), filtered and washed with MTBE, then redissolved in 0.1% aqueous NH4OH and lyophilized. Yield: 0.545 g
(83% of theory).
A portion of the crude linear product (120 mg) was stirred in 66 mL of 0.1 M NH4HCO3/DMSO (9:1, v:v) for 36 hours at room temperature. The solution was lyophilized to yield a solid. Five sample aliquots (20 mg each) were injected into a Vydac C18 column (22X250 mm, 10μ, 300 A) and reverse phase HPLC was performed under the following conditions: Solvent A, 0.1% TFA in water; Solvent B, 0.1% TFA in CH3CN; linear gradient from 43 to 48% B in A over 50 min; flow rate:
12 mL/min. The fractions containing the major peak (215 nm) eluting between 37.0 and 38.5 min were pooled and lyophilized to yield 1.2 mg (1.2%) of Example 1 as a white, fluffy solid.
Analytical HPLC of the above-prepared OBF: Vydac C18 (4.6 x 250 mm); 215 nm, 1.0 mL/min: linear gradient from 40% to 60% B in A over 50 minutes; retention time: 20.36 minutes. Purity: greater than 95% (Solvent A, 0.1% TFA in water; Solvent B, 0.1% TFA in acetonitrile). MS (electrospray): found molecular weight (derived) 7338.09. Amino acid analysis: Asx(5) 4.1; Glx(11) 12.6; Ser(10) 8.7; Gly (3) 5.1; His(1) 0.5; Arg(2) 1.7; Thr(2) 1.7; Ala(3) 3.2; Pro(3) 5.0; Tyr(1) 0.6; Val(4) 3.8; lle(1) 1.2; Leu(16) 15.0; Phe(1) 0.7; Lys(2) 1.6; Cys(2) not detected.
Example 2 SEQ. ID. NO.:3
N-Acetyl-L-seryl-L-lysyl-L-seryl-L-cysteinyl-L-seryl-L-leucyl-L-prolyl-L-glutaminyl-L- threonyl-L-serylglycyl-L-leucyl-L-glutaminyl-L-lysyl-L-prolyl-L-α-glutamyl-L-seryl-L- leucyl-L-α-aspartylglycyl-L-valyl-L-leucyl-L-α-glutamyl-L-alanyl-L-seryl-L-leucyl-L- tyrosyl-L-seryl-L-threonyl-L-α-glutamyl-L-valyl-L-valyl-L-alanyl-L-leucyl-L-seryl-L- arginyl-L-leucyl-L-glutaminylglycyl-L-seryl-L-leucyl-L-glutaminyl-L-α-aspartyl-L- isoleucyl-L-leucyl-L-glutaminyl-L-glutaminyl-L-leucyl-L-α-aspartyl-L-valyl-L-seryl-L- prolyl-L-α-glutamyl-L-cysteine, S,S-crosslinked
A protected peptide ("intermediate B") of SEQ.ID.NO.:3 was assembled stepwise by the solid phase method on an Applied Biosystems Model 431 A Peptide Synthesizer using the Fmoc/HBTU/HOBt program supplied with the instrument. The starting Fmoc-Cys(Trt)-HMP resin (polystyrene, 1% divinylbenzene copolymer) was purchased from Midwest Bio-Tech (0.412 g, 0.202 mmol). Amino acids were coupled as their Nα-Fmoc derivatives. The side chains of Ser, Thr and Tyr were protected with the t-butyl group; those of Cys and Gin with the trityl group, those of Asp and Glu with the t-butyl ester group, that of Arg with the 2,2,5,7,8- pentamethylchroman-6-sulfonyl (PMC) group and that of Lys with the Nε-t- butyloxycarbonyl (t-Boc) group. Fmoc groups were removed at each cycle by a 6 min treatment with 20% piperidine in NMP. Each amino acid derivative was double coupled (25 min, room temperature), in 5-fold molar excess, using one equivalent of 2- (1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophophate (HBTU) and 1- hydroxybenzotriazole (HOBt) in NMP and DIEA. After the final coupling, the N- terminal Fmoc group was removed as described above and the resulting resin was washed with NMP and treated twice with 1 -acetyl imidazole (550 mg, 5.0 mmol) in NMP (8 mL) for 25 min. The resulting 54 amino acid peptidyl-resin was washed with NMP and DCM and dried, yielding 1.471 g of B. Weight gain: 68% of theory.
Simultaneous deprotection and cleavage of the peptide (intermediate B) from the resin was accomplished by stirring the protected polypeptidyl-resin (1.471 g, 0.137 mmol) in 22 mL of CF3COOH/water/thioanisole/dithiothreitol/phenol
(10:0.5:0.5:0.3:0.8, v/v/v/w/w) for 3 hours at room temperature. The resin was removed by filtration and the filtrate was concentrated in vacuo. The crude product was precipitated with cold methyl t-butyl ether (MTBE), filtered and washed with MTBE, then redissolved in 0.1% aqueous TFA and lyophilized. Yield: 0.645 g (77% of theory). A portion of the crude linear product (140 mg) was stirred in 140 mL of
0.1 M NH4HCO3/DMSO (9:1 , v:v) for 20 hours at room temperature. The solution was lyophilized. Four sample aliquots (20 mg each) were injected into a Vydac C18 column (22X250 mm, 10μ, 300 A) and reverse phase HPLC was performed under the following conditions: Solvent A, 0.1% TFA in water; Solvent B, 0.1% TFA in CH3CN; linear gradient from 40 to 43% B in A over 50 min; flow rate: 12 mL/min.
The fractions containing the major peak (215 nm) eluting between 27 and 30 min were pooled and lyophilized to yield 16 mg (20%) of Example 2 as a white, fluffy solid. Analytical HPLC of the above-prepared OBF: Vydac C18 (4.6 x 250 mm); 215 nm, 1.0 mlJmin: linear gradient from 35% to 45% B in A over 50 minutes; retention time 30.63 minutes. Purity: greater than 95% (Solvent A, 0.1% TFA in water; Solvent B, 0.1% TFA in acetonitrile). MS (electrospray): found molecular weight (derived) 5788.6. Amino acid analysis: Asp(3) 3.2; Glx(10) 10.9; Ser(10) 8.7; Gly(3) 3.3; Arg(1) 1.1 ; Thr(2) 1.9; Ala(2) 1.9; Pro (3) 3.4; Tyr(1) 0.9; Val(4) 3.5; Cys(2) not quantitated; lle(2) 1.4; Leu(10) 9.7; Lys(2) 2.2. The above-prepared OBF gave a negative Ellman's test for free sulfhydryl.
Example 3 Process of Preparation of OBFs by Recombinant DNA Methods
Expression of OBFs in Escherichia coli
1. Method using PCR techniques
The OBFs can be expressed in £ coli as maltose binding fusion proteins (MBP) using an expression vector from New England Biolabs (pMAL™-c, 1990). The OBFs are ampified by PCR and cloned as Asp718/Sal I fragments by replacing most of the multiple cloning site and the factor Xa site of this vector. A two-step PCR protocol is used to simultaneously introduce a protease site (thrombin site) and a unique restriction enzyme site virtually anywhere within the OBFs. As an example, a thrombin site downstream of Asn 99 and simultaneously a BamHI restriction enzyme site (bold) are introduced, resulting in the following construction: 95 99 100
L Q I A N THROMBIN SITE D L
102
E N (SEQ.IN.NO. :10)
CTG CAG ATA GCC AAT CTG GTT CCG CGT GGA TCC GAC CTG
GAG AAT (SEQ.ID.NO. :9)
The DNA and protein sequences of the ob gene construct containing a thrombin site within the gene are given in the one-letter code. The numbering refers to the amino acid numbering of the ob protein. Bold is the recognition sequence for the BamHI restriction enzyme. The DNA sequence in italic derives from the ob gene.
This product can be achieved with a two-step PCR reaction executed as follows: step 1a: template full length ob gene primer MAspNN and Nov2rev step 1b: template full length ob gene primer Nov2for and MSalCC step 2: templates products of PCR reactions 1a and 1b primers MAspNN and MSalCC
The following oligonucleotide sequences are used:
MAspNN: 5 '- TCG GTA CCG GTG CCT ATC CAG AAA (SEQ.IN.NO. :11)
MSALCC: 5 - GTC GAC TCA GCA TTC AGG GCT AAC ATC
(SEQ.ID.NO. :12)
Nov2rev: 5' - GAG ATT CTC CAG GTC GGA TCC ACG CGG AAC CAG ATT GGC TAT CTG CAG (SEQ.ID.NO.13)
Nov2for: 5'- CTG CAG ATA GCC AAT CTG GTT CCG CGT GGA TCC GAC CTG GAG AAT CTC (SEQ.ID.NO. :14)
This system can be used for any modification within the gene by just changing the matching sequences in oiigonucleotides Nov2rev and Nov2for.
2. Method using in vitro mutagenesis systems
A second strategy to obtain the construct shown in figure 1 is as follows. The ob gene is amplified as BamHI/Sal I fragment (using oiigonucleotides MBamNN 5'- GGATCC GTGCCTATCCAGAAA GTC (SEQ.ID.NO.:15) and MSalCC 5'-
GTCGAC TCAGCATTCAGGGCTAACATC (SEQ.ID.NO.-.12)) and cloned into a mutagenesis vector system (i.e. pALTER-1 from Promega, 1994). The in vitro mutagenesis is performed as described by the manufacturer using the Nov2for oligonucleotide (see above). Finally, the mutated ob gene is cloned into the pMAL™. c expression vector (New England Biolabs, 1990). This mutagenesis system also allows introduction of a thrombin site into the ob gene at any other location by changing the matching sequences in oligonucleotide Nov2for.
Expression and purification of ob fragments expressed as maltose binding protein fusion in £ coli:
Expression: medium: M9 minimal medium containing 0.5% amino acids, trace metals, and 50 μg/ml ampicillin bacterial strain BL21; expression conditions: induce bacteria in exponential growth phase (OD600=0.8) with
0.5 mM IPTG shaking at 37 °C for 3-4 hours, collect cells by centrifugation (3500g) and wash pellet once with TNE (10 mM Tris/HCl pH 8.0, 100 mM NaCl, 10 mM
EDTA), shock freeze cell pellets in liquid nitrogen and store at -20 °C until use.
Purification: The cell pellet (from 1 to 1.5 L cell culture) is resuspended in 30 mL lysis buffer (10 mM MOPS/NaOH pH 6.0, 2 mM EDTA, 500 mM NaCl, protease inhibitors) in a homogenizer and lysed by french press (SLM Aminco 40k preparative cell, single run at 1200 PSI). The lysis suspension is centrifuged (35 min, 35,000 rpm, Beckman 45TI rotor). The fusion protein is in the supernatant and can be directly affinity purified on 800-21 amylose resin (Biolabs Inc.) following the manufacturer's instructions. The protein is eluted in the lysis buffer containing 50 mM maltose. The pH of the eluate is increased to pH 8-9 and bovine thrombin (Amour Pharmaceutical Compny) is added to 5 U/mg fusion protein. The reaction is incubated for 30-40 min at RT and stopped with 1 mM benzamidine. The OBFs are precipitated with 40% acetone, oxidized and further purified by reversed phase HPLC as described above.
Example 4 Treatment of ob/ob mice with OBF
Animals: Female obese (ob/ob) mice were obtained from Jackson Laboratory (Bar Harbor, ME) at 5-6 weeks of age. The animals were housed two per cage at 24°C with a 6 am to 6 pm light cycle. They were give ad lib access to water and powdered food (Purina 9F-5020) in food cups. Mice were acclimated for two weeks prior to implantation of the Alzet pumps.
Implantation of Alzet pumps: At day 0 of the study mice (n=6/group) were implanted with Alzet Model No. 2002 mini-osmotic pumps (Alza Corporation, Palo Alto, CA) containing OBF of SEQ.ID.NO.:2 as prepared in Example 2 (54-mer cyclized ob peptide) or an unrelated polypeptide of sequence: Leu-Ala-Arg-Ser-Leu- Ala-Pro-Ala-Glu-Val-Pro-Lys-Gly-Asp-Arg-Thr-Ala-Gly-Ser-Pro-Pro-Arg-Thr-lle-Ser- Pro-Tyr (control peptide, SEQ.ID.NO.:16). The pumps were implanted subcutaneously into the back area of each animal, under isoflurane anesthesia. Animals were infused with each peptide at a rate of 5 μg/mouse/day for 14 days.
Evaluation: Food consumption for each pair of mice was monitored daily and body weight was taken at day 0, 7 and 13 of treatment. Animals were sacrificed at day 14, following a 16 hr fast, and plasma and abdominal white adipose tissue (WAT) were collected from each animal for analysis. WAT was quantitatively removed from each animal and immediately frozen in liquid nitrogen, and stored at -70°C.
Plasma chemistries were determined enzymatically using a Roche COBAS-MIRA S clinical analyzer. Plasma glucose and triglyceride levels were determined by an assay from Roche Diagnostics, Montclair, NJ; plasma non-esterified fatty acids (NEFA) levels were quantitated by an assay obtained from Wako Biochemicals, Wako, TX. Plasma insulin levels were determined by a radioimmunoassay (Incstar Corporation, Stillwater, MN), utilizing rat insulin as the standard. Plasma corticosterone levels were determined by a double antibody radioimmunoassay (ICN Biochemicals, Costa Mesa, CA) utilizing rat corticosterone as the standard.
Results: No significant effect on food consumption, body weight gains, adipose tissue mass, or plasma insulin and corticosterone levels (Table 1) were found in the group treated with OBF, relative to the control peptide. However, plasma glucose levels were significantly decreased by 34%, and plasma triglyceride levels were decreased by 20%, following 14 days of infusion with OBF, relative to infusion with the control peptide. Further experiments at similar doses of OBF infusion through Alzet pumps showed non-statistically significant effects on plasma glucose and triglyceride levels. These results may be due to either insufficiently high dosage of OBF or to substantial delivery of OBF to the intrascapular brown adipose tissue (BAT), possibly resulting from the subcutaneous placement of the Alzet pumps into the back of the animals. It is well documented that BAT is defective in ob/ob mice.
Table 1. The Effect of Treatment of oblob Mice with polypeptides of the formula SEQ. ID. NO 1 (5 μg/day x 14 days, Alzet pump, s.c.)
Parameter Control Polypeptide of the formula SEQ. ID. NO 1
Change in Body Weight (g) 4.7 ± 0.6 3.1 ±0.9
WAT Mass (g) 5.8 + 0.2 4.8 ± 0.1*" (-16%)
Plasma Glucose (mg/dl) 220 ± 20 146 ± 13" (-34%)
Plasma TG (mg/dl) 101 ± 4 81 ± 6* (-20%)
Plasma NEFA (mEq/L) 1.15 ±0.06 1.36 ± 0.02" (+18%)
Plasma Insulin (ng/ml) 3.49 + 0.39 4.56 ±0.86
Plasma Corticosterone 476 ± 49 516 ± 24
(ng/ml)
Data expressed as the mean ± SEM (n=6/group) The statistical analysis is based on a two-tailed Student's t-test (*p<0.05, "p<0.01 , *"p<0.001).
The effects of intra-cerebroventricular (ICV) admininstration of OBF on food intake and body weight in obese (ob/ob) mice were non-statistically significant which is believed to be due to sub-optimal dosage.

Claims

What Is Claimed Is:
1. A biologically active C-terminal fragment of obese gene product having less than 68 total amino acids, two of which are capable of forming cross-linkages.
2. A biologically active polypeptide having the sequence of SEQ.ID.N0.:1 , SEQ.ID.NO.-.2., SEQ.ID.NO.:3, SEQ.ID.NO.:4, or a polypeptide having at least 30% homology to any of said sequences; wherein said polypeptide has the following features: (1) residues in positions 117 and 167 with side-chains capable of forming cross-linkages ; (2) an amphipathic alpha-helix spanning about 15-25 C-terminal residues; and, (3) a loop supported by at least one helical scaffold and at least one covalent cross-linkage.
3. The polypeptide of Claim 2 having an amphipathic alpha-helix N-terminal to residue 117, spanning about 15-25 residues; and wherein the residues capable of forming cross-linkages are selected from the group consisting of disulfide, lactam, lactone, and dicarba-cystine.
4. The polypeptide of Claim 3 wherein residues 117 and 167 are cysteine.
5. A polypeptide having the sequence of SEQ.ID.NO.:1.
6. A polypeptide having the sequence of SEQ.ID.NO.:2.
7. A polypeptide having the sequence of SEQ.ID.NO.:3.
8. A polypeptide having the sequence of SEQ.ID.NO.:4.
9. A method for treating diabetes, obesity, or both in a patient in need of treatment, where the diabetes is obese protein-associated, the method comprising administering an effective amount of OBF to the patient.
10. The method of Claim 9 wherein said effective amount is about 0.001 to about 1000 mg per kg of body wt per day.
11. The method of Claim 9 wherein said effective amount is about 0.05 to about 50 mg per kg of body wt per day.
12. The method of Claim 9 wherein a concomitant decrease in food consumption does not occur.
13. A nucleic acid coding for the polypeptide of Claim 1.
14. The nucleic acid sequence of Claim 13 which is DNA.
15. A nucleic acid coding for the amino acid sequence of SEQ.ID.NO.:1 , SEQ.ID.NO.:2, SEQ.ID.NO.:3, or SEQ.ID.NO.:4.
16. The nucleic acid sequence of Claim 15 which is DNA.
17. A DNA sequence having the sequence of SEQ.ID.NO.:5, SEQ.ID.NO.:6, SEQ.IN.N0.7, or SEQ.ID.NO.:8, or a DNA sequence capable of hybridizing under stringent conditions to a DNA sequence complementary to any of said sequences.
18. A plasmid comprising the nucleic acid sequence of Claim 17.
19. A host cell containing the plasmid of Claim 18.
20. A method for producing the polypeptide of Claim 1 comprising culturing the host cell of Claim 18 under conditions suitable for expression of said polypeptide.
21. A method of diagnosing obesity or diabetes or a predisposition to develop obesity or diabetes in an individual, said method comprising (a) labelling OBF;
(b) contacting the labelled OBF with biological material from said individual;
(c) monitoring the biological material for the presence of bound OBF to obtain a first set of results; (d) comparing the first set of results from step (c) with with a second set of results obtained using similar monitoring in an individual not having OBF-associated obesity or diabetes; and
(e) diagnosing the presence of obesity or diabetes in said individual or the tendency of said individual to develop obesity or diabetes by comparing the first set of results and second set of results to determine if the results differ.
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