WO1997010836A1 - Peptides and peptidomimetics inhibiting the oncogenic action of p21 ras - Google Patents
Peptides and peptidomimetics inhibiting the oncogenic action of p21 ras Download PDFInfo
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- WO1997010836A1 WO1997010836A1 PCT/US1996/015098 US9615098W WO9710836A1 WO 1997010836 A1 WO1997010836 A1 WO 1997010836A1 US 9615098 W US9615098 W US 9615098W WO 9710836 A1 WO9710836 A1 WO 9710836A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/82—Translation products from oncogenes
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/56—Compounds containing cyclopenta[a]hydrophenanthrene ring systems; Derivatives thereof, e.g. steroids
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K7/00—Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
- C07K7/64—Cyclic peptides containing only normal peptide links
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
Definitions
- This invention relates to peptides effective in inhibiting oncogenesis, particularly as related to inhibition of p21 ras and adenocarcinomas of the colon, pancreatic carcinomas, neuroblastomas, and other cancers which express the transformed sequence of the ras gene product .
- ras protooncogenes are activated by characteristic point mutations in a wide variety of malignancies.
- the expressed p21 ras proteins are oncogenic by virtue of single substituted amino acids, usually at position 12 or 61 of the 189-residue p21 ras gene product, ras proteins act as membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP.
- Pancreatic carcinoma has a high incidence of ⁇ -ras mutations. Mutated K-ras sequences which can be identified by polymerase chain reaction utilizing allele-specific primers can even be found in the plasma or serum from patients with pancreatic carcinoma.
- the c-Ki-ras oncogene is activated by point mutations involving codon 12 in 72%-100% of primary pancreatic adenocarcinomas, but the gene is not activated in nonneoplastic tissues. Cancer of the exocrine pancreas is rarely curable.
- Lung cancers also frequently involve ras mutations.
- Point mutations in codon 12 of the K-ras protooncogene occur more frequently in lung adenocarcinomas from smokers (30%) than they do in lung adenocarcinomas from nonsmokers (7%) , suggesting that smoking is an important factor in the induction of these mutations.
- the ras oncogene may thus be a specific target of the mutagenic activity of tobacco smoke, and suggest that DNA alterations at this site can occur early and irreversibly during the development of adenocarcinomas of the lung. Mutations in the ras protooncogenes are the most frequently observed molecular alteration in acute myeloid leukemia (AMD .
- AMD acute myeloid leukemia
- ras mutations occur as late or relatively early events in the multistep process of myeloid transformation, remains an open question.
- the ras oncogene plays a role in experimental mammary carcinogenesis; the evidence in human breast cancer, however, is more limited.
- the ras oncogene plays a role in nitrosoamine-induced esophageal tumors in rats, but in human esophageal cancers ras gene mutations are more rarely found.
- the ras proteins are key regulators of the growth of eukaryotic cells. Some of the direct targets are unknown. These target proteins include raf-1, gap, phosphatidylinositol-3- hydroxykinase and, very recently, two nuclear proteins, C-JUN and its kinase (JNK) .
- the three-dimensional x-ray crystal structure for a ras-related protein bound to a domain of raf-1 has been elucidated.
- the ras-related protein (_______________) binds to raf directly, utilizing residues contained in a sequence involving amino acids 35-37.
- All of the contact residues in the ras- related protein are homologous to those in the corresponding segment of ras-p-21.
- One of the inventors has shown that the p- 21 ras protein (35-47 segment) selectively inhibits the mitogenic effects of oncogenic ras-p-21.
- the activation of ras proteins is a key step in the signal transduction pathways triggered by ligand-bound cell surface receptors, such as the insulin receptor.
- the classical target of the ras protein is the GTPase activating protein GAP.
- GAP GTPase activating protein
- This target protein is thought to play an essential role in the regulation of ras activity by increasing the GTPase activity of wild type, but not transformed ras .
- GAP-related proteins which includes pl20-GAP.
- Other target proteins besides mammalian gap itself include (1) IRA1 and IRA2 , the functional equivalents of GAP in yeast.
- NF1 Human neurofibromitosis
- NF1 is associated with type 1 neurofibromatosis, one of the most frequently inherited genetic diseases characterized, in part, by multiple neural tumors.
- NF1 has been shown genetically and biochemically to interact with and stimulate the GTPase activity of ras,- (5) Drosophila Gapl, which acts as a negative regulator of signalling by the Sevenless (SOS) receptor tyrosine kinase involved in eye development.
- SOS Sevenless
- Human SOSl and SOS2 genes have also been recently identified which encode proteins that control GDP-->GTP exchange on ras proteins and are involved in signal transduction by tyrosine kinase receptors.
- si tu hybridization shows that SOSl maps to 2p22-->pl6 and SOS2 to 14q21-->q22 in the human genome.
- raf Another important target of ras is raf .
- the protein encoded by the c-raf-1 protooncogene is thought to function downstream of p21 ras because disruption of raf blocks signalling by ras in a number of systems.
- a highly-conserved 81 residue region of the N-terminus of raf protein has been to be shown to be critical as the ras protein interaction region.
- the raf gene product interacts with both wild-type and activated ras protein.
- approximately 50% of the clones identified as interacting with ras were encoded portions of the c-raf and A-raf serine/threonine kinases.
- ras and the N-terminal region of raf protein associate directly in vi tro and this interaction is dependent on GTP bound to ras .
- ras-related GTP-binding proteins Within the superfamily of ras-related GTP-binding proteins, only the ras protein itself has been shown to act as an oncogenic protein. Many other proteins, however, have substantial amino acid homology to ras. This ras superfamily of GTP-binding proteins (> 50 members) regulates a diverse spectrum of intracellular processes. These include cellular proliferation and differentiation, intracellular vesicular trafficking, cytoskeletal control, NADPH oxidase function, as well as others. Some of these homologs may have biological activities which are related to ras. For example, rhoA encodes a ras-related GTP-binding protein that was thought principally to play a role in cytoskeletal organization.
- This small molecule induces the rrg gene, which encodes a proteinase sequence showing 90% amino acid sequence identity to lysyl oxidase.
- the precursor of the ras oncoprotein must undergo farnesylation or similar modification of the cysteine residue located in a carboxyl-terminal tetrapeptide.
- These C-terminal lipid modifications are essential for the interaction of ras-related proteins with membranes. While all ras proteins are farnesylated and some palmitoylated, the majority of other ras-related proteins are geranylgeranylated.
- EP 203587 describes new ras oncogene polypeptides which are used for producing antibodies for immunogenic assays.
- these sequences are derived from ras and its homologs in the carboxyl terminal domain (residues 170 - 189 in SEQ ID NO:5) and are thus physically distant from and completely unrelated to any sequences claimed herein.
- these sequences were claimed for the production of antibodies, preferably by linking to an immunogenic carrier, and a claim for direct therapeutic application was not made.
- peptides constructed from ras and its homologs for therapeutic application namely by interfering with downstream or upstream actions of r ⁇ s_ itself, are useful.
- the method of identification of said peptides utilizing calculational approaches is believed novel and has unexpectedly led us to these cyclic peptides and peptidomimetics disclosed herein.
- the present invention provides peptides, cyclized peptides and peptidomimetics capable of inhibiting the oncogenic action of p21 ras .
- the oncogenic ras-inhibiting cyclized peptides correspond to domains of the oncogenic ras protein which are most flexible and important in " interacting with target proteins upstream and downstream from ras.
- the peptidomimetics are obtained by molecular modeling, including the structural minimization techniques of molecular dynamics.
- the peptides are designated by the formulas: Val-Val-lie, Lys-Arg-Val, Ile-Lys-Arg-Val-Lys-Asp (SEQ ID NO:1), Lys-Cys-Asp- Leu-Ala (SEQ ID NO:2) , Cys-Asp-Leu-Ala-Ala-Arg-Thr (SEQ ID NO:3) , Asp-Leu-Ala-Ala (SEQ ID NO:4) or physiologically acceptable salts of the foregoing peptides.
- cyclic analogues of the above peptides and certain peptides and cyclic peptides are also provided in the present invention.
- R(l) R(2) , R(3) and R(4) represent, in the most general case, any amino acid which can serve as an amino acid residue linker.
- Amino acid residue linkers are usually at least one residue and can be most often two to four residues, more often 1 to 10 residues, both ranges being inclusive.
- Typical amino acid residues useful for linking are tyrosine, cysteine, lysine, and glutamic and aspartic acid.
- [R(D , R(2)] and [R(3) , R(4)] are each independently selected from either the group consisting of Glu, Gin, Asp, Asn or from the group consisting of Lys, Arg, Orn.
- the symbol - represents a bond between the carboxyl and amino termini by which R(l) and R(4) can be interconnected to each other via an lower alkenyl or lower alkynyl group, but most preferably by a branched or unbranched methylene bridge of type --(CH 2 ) m --or -- (CH 2 ) m --M-- (CH 2 ) m ,-- .
- m and m' are integers from 1 to 6, inclusive, and preferably from 1 to , inclusive; and M is NH, N[R(5)] , 0, S or CH-R(5), wherein R(5) is lower alkyl, cycloalkyl or aryl and is preferably methyl, ethyl, propyl, phenyl, X-phenyl, or heterocyclic, wherein X is Cl-, CF 3 -, F-, substituted at the o-, m- , or p- positions on the phenyl group M can contain a part of another diamino acid within the same peptide, e.g., the omega amino group of the one residue can be so linked to such an unnatural amino acid residue in a terminal residue.
- any amino acid in the sequences provided hereinabove may be replaced with its D-analogue, with the proviso that not more than 50% of the total amino acids are so replaced.
- a homologous conservative substitution for any amino acid is within the bounds of the present invention provided that substitution does not eliminate the oncogenic ras p21-inhibiting activity.
- peptides according to the invention it is also possible to envisage intercalating between several amino acids, or even between all the amino acids, of the peptides defined above, dextrorotatory amino acids, and in particular dextrorotatory phenylalanine or dextrorotatory tryptophan, capable of preventing the action of the degradative enzymes in the cell environment and thus of increasing their activity.
- Another modification in this sense consists in replacing certain amino acids, for example of the isoleucine type, by leucine.
- a subject polypeptide can differ, unless otherwise specified, from the natural sequences shown above by the sequence being modified by terminal -NH 2 acylation, e.g., acetylation, or by terminal-carboxylamidation, e.g., with ammonia, alkylamines, and the like.
- This invention further relates to peptidomimetics which model the critical semi-extended conformation of at least one peptide of or cyclic peptide of the present invention, exemplified by the compounds of Structure 1:
- each of X and Y is H.
- An exemplary compound falling within Structure 1 is 3 malonoxy-6- (2-aminoethyl) aminocyclopentanoperhydrophenanthrene (Structure 2) .
- the natural sequence of the human oncogenic ras p21 is given in SEQ ID NO:5.
- the crystal X-ray structure has been determined at high resolution for that portion of the human ras protein corresponding to residues 1 to 166 of SEQ ID NO: 5.
- the regions of the p21 protein that are the most likely to change their conformations upon activation of the protein, e.g. by oncogenic amino acid substitutions have been computed using two different methods. Both methods are based on the principle that the linear sequence of amino acids in a protein determines its unique three-dimensional structure. Given an amino acid sequence of a polypeptide or protein, therefore, it should be possible to predict its three-dimensional structure. This task can be accomplished by using the principle that the observed three-dimensional structure of a protein is the one of lowest free energy. There are a vast number of possible structures a given polypeptide chain can adopt, but essentially only one of these is observed.
- the interatomic interactions in the protein chain must greatly stabilize its final folded form, i.e., lower its conformational energy substantially with respect to that of any other competing structure.
- the structure of lowest conformational energy so computed is then predicted to be the observed structure of the protein. This structure may be the one determined by x-ray crystallography or by 2- or 3-dimensional nuclear magnetic resonance (NMR) techniques.
- Equation 1 A set of potential energy functions, in the computer program ECEPP (Empirical Conformational Energy of Peptides Program) , have been developed that accurately compute the conformational energies of given conformations of proteins.
- the conformational energy of a peptide can be expressed in Equation 1.
- E tot is the total conformational energy of the protein
- the Q's are the charges on the i th and j th atoms
- R 1 is the distance between the i th and j th atoms
- D is the dielectric constant
- e 13 and 1D are the lowest non-bonded (Lennard-Jones) energy and the distance at this lowest energy between atoms i and j in the protein
- a k is the torsional barrier to rotation around specific bonds
- ⁇ k is the k ch dihedral angle in the protein
- n is a degeneracy factor, i.e., 3 for single bonds and 2 for double bonds
- the sign in the last summation term is positive for single bonds and negative for double bonds such as occur in the peptide bond units.
- This equation shows the total conformational energy as the sum of three terms: the pairwise electrostatic interactions between the individual atoms of a protein, each of which has a partial charge, (first sum) ; a non-bonded energy term (second term) that consists of an attractive term that varies as the inverse sixth power (tenth power for hydrogen-bonding atoms) of the distance between the atoms (from an induced dipole-induced dipole interaction term) and a repulsive term, from the overlap of electron shells, that varies as the inverse twelfth power of the interatomic distance; and finally a torsional term (third sum) that depends upon the bonds about which rotation takes place.
- Molecular dynamics is based on the principle that the positions of the atoms of a molecule can be predicted as a function of time by solving Newton's equations of motion for the molecule.
- the force on the molecule is the negative of the first derivative of the potential function with respect to the coordinates of each of the atoms.
- Newton's equations of motion are then integrated, using the Verlet algorithm, over a trajectory such that the low energy regions around the starting structure are computed.
- the trajectories are computed over time intervals such that the total energy converges to a low, constant value.
- the structures whose energies have converged are then used to compute an average structure.
- the present inventors have identified important peptide regions of the protein that are involved in the signal transduction process, and these peptides can be used to design anti-cancer agents, as taught herein.
- these peptides can be used to design anti-cancer agents, as taught herein.
- these domains contain unique extended structures and/or short beta-bend structures which are hypothesized to account in large part for their biological uniqueness. This suggested that cyclization of the peptide structures to force the beta-bend conformation in place would serve to enhance therapeutic activity.
- a domain of particular interest is the domain from residues 35 through 47 of SEQ ID NO:5, i.e., Thr-Ile-Glu-Asp-Ser-Tyr-Arg-Lys-Gln-Val-Val- Ile-Asp (SEQ ID NO:6)
- the peptide corresponding to residues 44 to 46 in SEQ ID N0:5, i.e., Val-Val-He of still more interest is the sequence from residues 96 to 110 of SEQ ID NO:5, i.e., Tyr-Arg-Glu-Gln-He-Lys-Arg-Val- Lys-Asp-Ser-Asp-Asp-Val-Pro
- SEQ ID NO:7 of even more particular interest is the sequence from residues 101-103 in SEQ ID NO:5, i.e., Lys-Arg-Val; and the sequence corresponding to residues 100 to 105 in SEQ ID NO:5, i.e.
- sequences of closely related ras proteins can be derived by one skilled in the art from the sequences of closely related ras proteins . Such sequences may possess enhanced therapeutic activity.
- Nonlimiting examples of such proteins closely related to the ras gene product which represent the parent sequences having identical or nearly identical three dimensional structures and from which homologs of the sequences given in the preceding paragraph can be derived by one normally skilled in the art are:
- ras-related protein Ara-3 [Arabidopsis thaliana (mouse ear cress) ] (SEQ ID NO: 10) ;
- ras-related protein Rab-IA [Lvmnea stagnalis (great pond snail) ] SEQ ID NO:14
- ras-related protein Rab-2 [Homo sapiens (human) ] SEQ ID NO: 15;
- Rab-2 [Orvctolagus cuniculus (rabbit)] SEQ ID NO:17;
- ras-related protein Rab-3 [Drosophila melanogaster (fruitfly)] SEQ ID NO:19;
- Rab-7 [Canis familiaris (dog) ] SEQ ID NO:23;
- ras-related protein Rab-7 [Dictvostelium discoideum (slime mold) ] SEQ ID NO:24;
- RabC ras-related protein RabC [EL . discoideum] SEQ ID NO:26;
- ras-related protein Ral-B [IL. sapiens] SEQ ID NO:32;
- Rap-1 [IK. discoideum] SEQ ID NO:37;
- Rap-2A H. sapiens
- Rap-2B [IK. sapiens] SEQ ID NO:39;
- Rap-IA [H__ sapiens] SEQ ID NO:41;
- Rap-IB [IL. sapiens] SEQ ID NO:42;
- ras-like protein rasA [P. discoideum] SEQ ID NO:44;
- ras-like protein rasB [P. discoideum] SEQ ID NO:45;
- ras-like protein rasC [D. discoideum] SEQ ID NO:46;
- ras-like protein rasG [D. discoideum] SEQ IP NO:47;
- ras-like protein F54C8.5 [CL . elegansl SEQ ID NO:48; ras . -like protein CC-ras [Coprinus cinereus (inky cap fungus) ]
- ras-like protein [Geodia cydonium (sponge)] SEQ ID NO:50;
- cyclized peptides useful for inhibiting the oncogenic activity of the ras protein, said peptides having formulas as given below:
- R(l) R(2) , R(3) and R(4) represent, in the most general case, any amino acid, such that they serve as amino acid residue linkers.
- Amino acid residue linkers are usually at least one residue and can be most often two to four residues, more often 1 to 10 residues.
- Typical amino acid residues used for linking are tyrosine, cysteine, lysine, glutamic and aspartic acid.
- [R(D, R(2)] and [R(3) , R(4)] independently are selected from either the groups [Glu, Gin, Asp, Asn] or [Lys, Arg, Orn] .
- - represents a bond between the carboxyl and amino termini by which R(l) and R(4) can be interconnected to each other via an lower alkyl, alkenyl or lower alkynyl group, but most preferably by a branched or unbranched methylene bridge of type --(CH 2 ) m --or -- (CH 2 ) m --M-- (CH 2 ) m . -- .
- m and m' are integers from 1 to 6, inclusive, and preferably from 1 to 3, inclusive; and M is NH, N[R(5)] , O, S or CH-R(5) , wherein R(5) is lower alkyl, cycloalkyl or aryl and is preferably methyl, ethyl, propyl, phenyl, X-phenyl, or heterocyclic, wherein X is C1-, CF 3 , F- , substituted at the o- , m- , or p- positions on the phenyl group.
- M can contain a part of another diamino acid within the same peptide, e.g., the omega amino group of the one residue can be so linked to such an unnatural amino acid residue in a terminal residue.
- any amino acid in the cyclized peptide sequences (I)-(X) recited herein may be replaced with its D- analogue, insofar as not more than 50% of the total amino acids are so replaced.
- a homologous conservative substitution for any amino acid is within the bounds of the present invention.
- Conservative substitutions include Glu for Asp, Gin for Asn and Val for He, among others, as well-known to the art.
- dextrorotatory amino acids capable of preventing the action of the degradative enzymes in the cell environment and thus of increasing their activity.
- dextrorotatory amino acids capable of preventing the action of the degradative enzymes in the cell environment and thus of increasing their activity.
- Another modification in this sense consists in replacing certain amino acids, for example of the proline type, by D-tryptophan.
- a subject polypeptide can differ, unless otherwise specified, from any of the natural sequences shown herein above by the sequence being modified by terminal -NH 2 acylation, e.g., acetylation or by terminal-carboxylamidation, e.g., with ammonia, alkylamines, and the like.
- the placement of hydrophobic amino acid residues is highly dependent on the peptide sequence. For example, for the 35-47 peptide sequence, corresponding to amino acids 35-47 of SEQ ID NO: 5, there is a distinct hydrophobic region for the amino acid residues corresponding to amino acids 44-46 of SEQ ID NO:5.
- the bridge in Compound (X) occurs at what corresponds in structure to amino acids 44-46 in SEQ ID NO:5. It is possible to extend this hydrophobic segment without sacrificing activity.
- the carboxyl terminal Asp residue can be replaced with one or more hydrophobic residues such as Val or He, and the result is greater efficiency in crossing cell membranes.
- Short half-lives of peptides can be at least partially extended by the addition of D-amino acids to either or both of the amino and carboxyl terminal ends of the peptide.
- D-amino acid residues block the action of exo- proteases that degrade peptides from their amino or carboxyl ends.
- the cyclization of the peptide further renders the peptide less susceptible to proteolysis.
- Recent advances in the field of peptides have been directed towards the stabilization of these peptides against enzymatic or hydrolytic degradation. It would be extremely valuable to stabilize these peptides from degradation by proteolytic enzymes in order to improve their pharmacokinetic properties.
- Peptidomimetics are generally preferable as therapeutic agents to peptides owing to their enhanced bioavailability and relative lack of attack from proteolytic enzymes.
- the present inventors have used the techniques of molecular modeling supra to design a peptidomimetic which mimics the critical beta-bend aspects of the peptide corresponding in sequence to amino acids 96-110 of SEQ ID NO:5 (p21 ____£) .
- the bend structure occurs at amino acids 102-103 in the p21 ras protein. These residues have been implicated in the binding of ras p21 to SOS.
- Peptidomimetric compounds which inhibit the oncogenic or transforming activity of the p21 ras protein are provided by the compounds of Structure I :
- each of x and y is H.
- the instant invention comprises novel peptides of medicinal importance most particularly for the treatment of adenocarcinomas of the colon, pancreatic carcinomas, neuroblastomas, and other cancers of undefined germ cell origin which express the transformed sequence of the ras protein.
- These peptide sequences were unexpectedly obtained by the use of molecular dynamic simulations on ras p21 to define which domains of the protein were most flexible and were thus most important in interacting with target proteins upstream and downstream from ras .
- peptides are identified by the following amino acid sequences: Thr-Ile-Glu-Asp-Ser-Tyr-Arg-Lys-Gln-Val-Val-Ile-Asp (SEQ ID NO:6) , Val-Val-He, Tyr-Arg-Glu-Gln-He-Lys-Arg-Val-Lys-Asp-Ser- Asp-Asp-Val-Pro (SEQ ID NO:7) , Lys-Arg-Val, Ile-Lys-Arg-Val-Lys- Asp (SEQ ID NO:l), Gly-Asn-Lys-Cys-Asp-Leu-Ala-Ala-Arg-Thr-Val- Glu (SEQ ID NO:8), Lys-Cys-Asp-Leu-Ala (SEQ ID NO:2) , Cys-Asp- Leu-Ala-Ala-Arg-Thr (SEQ ID NO:9), and Asp-Leu-A
- R(l) R(2), R(3) and R(4) represent, in the most general case, any amino acid, such that they serve as amino acid residue linkers.
- Amino acid residue linkers are usually at least one residue and can be most often two to four residues, more often 1 to 10 residues.
- Typical amino acid residues used for linking are tyrosine, cysteine, lysine, glutamic and aspartic acid, or the like.
- [R(D , R(2)] and [R(3) , R(4)] independently are selected from either the groups [Glu, Gin, Asp, Asn] or [Lys, Arg, Orn] .
- the symbol - represents a bond between the carboxyl and amino termini by which R(l) and R(4) can be interconnected to each other via an lower alkenyl or lower alkynyl group, but most preferably by a branched or unbranched methylene bridge of type --(CH 2 ) m --or -- (CH 2 ) m --M-- (CH 2 ) m .-- .
- m and m' are integers from 1 to 6 and preferably from 1 to 3; and M is NH, N[R(5)] , O, S CH-R(5) or does not exist, wherein R(5) is lower alkyl, cycloalkyl or aryl and is preferably methyl, ethyl, propyl, phenyl, X-phenyl, or heterocyclic, wherein X is C1-, CF 3 - , F- , substituted at the o-, m- , or p- positions on the phenyl.
- M can contain a part of another diamino acid within the same peptide, e.g., the omega amino group of the one residue can be so linked to such an unnatural amino acid residue in a terminal residue.
- any amino acid in the sequences provided may be replaced with its D-analogue, insofar as not more than 50% of the total amino acids are so replaced.
- Conservative substitutions include Glu for Asp, Gin for Asn and Val for He, among others, as is well known to those of ordinary skill in the art.
- a homologous conservative substitution for any amino acid is within the bounds of the present invention.
- dextrorotatory amino acids capable of preventing the action of the degradative enzymes in the cell environment and thus of increasing their activity.
- dextrorotatory amino acids capable of preventing the action of the degradative enzymes in the cell environment and thus of increasing their activity.
- Another modification in this sense consists in replacing certain amino acids, for example of the proline type, by D-tryptophan.
- a subject polypeptide can differ, unless otherwise specified, from the natural sequences shown above by the sequence being modified by terminal -NH 2 acylation, e.g., acetylation, or by terminal-carboxylamidation, e.g., with ammonia, alkylamines, and the like.
- the instant invention also comprises a method of use of the peptides supra for the treatment of adenocarcinomas of the colon, pancreatic carcinomas, neuroblastomas, and other cancers of undefined germ cell origin which express the transformed sequence of the ras protein.
- amino acid residues described herein are preferred to be in the "L" isomeric form.
- residues in the "D" isomeric form can be substituted for any L-amino acid residue, as long as the desired functional property is retained by the polypeptide.
- NH 2 refers to the free amino group present at the amino terminus of a polypeptide.
- COOH refers to the free carboxyl group present at the carboxy terminus of a polypeptide.
- variable amino acids capable of participating in the composition of this peptide is as follows: Y, Tyr, tyrosine; G, Gly, glycine; F, Phe, phenylalanine; M, Met, methionine; A, Ala, alanine; S, Ser, serine; I, He, isoleucine; L, Leu, leucine; T, Thr, threonine; V, Val, valine; P, Pro, proline; K, Lys, lysine; H, His, histidine; Q, Gin, glutamine; E, Glu, glutamic acid; W, Trp, tryptophan; R, Arg, arginine; D, Asp, aspartic acid; N, Asn, asparagine; C, Cys, cysteine.
- amino acid residue sequences are presented herein in the conventional left-to-right direction of amino-terminus to carboxy-terminus.
- amino acid residue is broadly defined to include the amino acids listed hereinabove, and modified and unusual amino acids, such as those listed in 37 C.F.R. 1.822(b) (4) , incorporated herein by reference.
- a dash at the beginning or end of an amino acid residue sequence indicates either a peptide bond to a further sequence of one or more amino acid residues or a covalent bond to an amino or hydroxyl end group.
- Polypeptide and peptide are terms used interchangeably herein to designate a linear series of amino acid residues connected one to the other by peptide bonds between the alpha-amino and carboxy groups of adjacent residues.
- Protein is a term used herein to designate a linear series of greater than about 20 amino acid residues connected one to the other as in a polypeptide.
- synthetic peptide refers to a chemically produced chain of amino acid residues linked together by peptide bonds that is free of naturally occurring proteins and fragments thereof.
- peptide encompasses linear and cyclic peptides .
- (D,L), (D) , or (L) preceding the amino acid designation means that this amino acids exists in that specific isomeric form, i.e. (D,L) Phe means that the amino acid phenylalanine exists as a racemic mixture; (D) Phe or D-Phe means that the amino acid phenylalanine exists as the D-stereoisomer or implied R configuration; (L) Phe means that the amino acid phenylalanine exists as the L stereoisomer or implied S configuration.
- Alkyl as used herein means methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, n-pentyl, neopentyl, 2-methylbutyl, 1-methylbutyl, 1-ethylpropyl, 1, 1-dimethylpropyl, n-hexyl, 1-methylpentyl, 2-methylpentyl, 3 -methylpentyl , 4 -methylpentyl , 3 , 3 -dimethylbutyl , 2,2-dimethylbutyl, 1, 1-dimethylbutyl, 2-ethylbutyl, 1-ethylbutyl, 1, 3-dimethylbutyl, n-heptyl, 5-methylhexyl, 4- ethylhexyl, 3-methylhexyl, 2-methylhexyl, 1-methylhexyl, 3-eth
- Cycloalkyl refers to a hydrocarbon ring having from 3 to 7 carbon atoms, inclusive.
- Examples of cycloalkyl groups are cyclopropyl, cyclopentyl, cycloheptyl, cyclooctyl, cyclononyl, and the like.
- aryl refers to aromatic groups which have at least one ring having a conjugated pi electron system and includes carbocyclic aryl, heterocyclic aryl aralkyl, and biaryl groups, all of which may be optionally substituted.
- Heterocyclic groups means groups having from 1 to 3 heteroatoms as ring atoms in the aromatic ring and the remainder of the ring atoms carbon atoms. Suitable heteroatoms include oxygen, sulfur, and nitrogen, and their heterocyclic compounds can include furanyl, thienyl, pyridyl, pyrrolyl, N-lower alkyl pyrrolo, pyrimidyl, pyrazinyl, imidazolyl, and the like, all optionally substituted.
- Substituted heterocyclic refers to any heterocyclic aryl group substituted by a alkyl, aryl, cycloalkyl, halo, sulfonate, or trifluoromethyl group.
- alkyl amino refers to the groups --NRR' wherein respectively, (a) R is alkyl and R' is hydrogen or alkyl; (b) R is aryl and R' is hydrogen or aryl, (c) R is cycloalkyl and R' is hydrogen or alkyl, (d) R is hydrogen and R' is itself linear aminoalkyl, (e) R is alkyl and R' is itself linear aminoalkyl .
- aminoalkyl refers to the groups - (CH 2 ) m -NRR' , wherein m is an integer from 1 to 6, inclusive and -NRR' is alkyl amino, as defined supra .
- Halo encompasses fluoro, chloro, bromo and iodo.
- protecting group means substituents which protect the reactive functional group from undesirable chemical reactions. Examples of such protecting groups include esters of carboxylic acids, ethers of alcohols and acetals and ketals of aldehydes and ketones.
- N-protecting group or N-protected as used herein means those groups intended to protect the N-terminus of an amino acid or peptide, to protect an amino group against undesirable reactions during synthetic procedures and includes, but is not limited to, sulfonyl, acetyl, pivaloyl, t-butyloxycarbonyl (Boc) , carbonylbenzyloxy (Cbz) , benzoyl and an L- or D-aminoacyl residue, which may itself be N-protected similarly.
- the deprotection conditions for the above protecting groups necessarily vary with the choice of protecting group.
- an acyl group such as an alkanoyl, alkoxycarbonyl or an aroyl group may be removed for example, by hydrolysis with a suitable base such as an alkali metal hydroxide, for example lithium or sodium hydroxide.
- a suitable base such as an alkali metal hydroxide, for example lithium or sodium hydroxide.
- an acyl group such as a t-butoxycarbonyl group may be removed, for example, by treatment with a suitable acid such as hydrochloric, sulfuric or phosphoric acid or trifluoroacetic acid and an arylmethoxycarbonyl group such as a benzyloxycarbonyl group may be removed, for example, by hydrogenation over a catalyst such as palladium-on-charcoal.
- COOH-protecting group or carboxyl-protecting group is, an esterifying group, for example an alkyl group
- an esterifying group such as an alkyl or arylmethyl group may be removed, for example, by hydrolysis with a suitable base such as an alkali metal hydroxide, for example lithium or sodium hydroxide.
- a suitable base such as an alkali metal hydroxide, for example lithium or sodium hydroxide.
- an esterifying group such as an arylmethyl group may be removed, for example, by hydrogenation over a catalyst such as palladium-on-charcoal using either hydrogen or ammonium formate as a hydrogen source by methods well-known to those skilled in the art.
- Electrolyte means a solution that has sufficient acid strength to render a basic starting material essentially protonated.
- Chemical derivative refers to a subject polypeptide having one or more residues chemically derivatized by reaction of a functional side group.
- derivatized molecules include for example, those molecules in which free amino groups have been derivatized to form amine hydrochlorides, p-toluene sulfonyl groups, carbobenzoxy groups, t-butyloxycarbonyl groups, chloroacetyl groups or formyl groups.
- Free carboxyl groups may be derivatized to form salts, methyl and ethyl esters or other types of esters or hydrazides.
- Free hydroxyl groups may be derivatized to form O-acyl or 0-alkyl derivatives.
- the imidazole nitrogen of histidine may be derivatized to form N-imidazolyl- benzylhistidine.
- chemical derivatives those peptides which contain one or more naturally occurring amino acid derivatives of the twenty standard amino acids.
- 4-hydroxyproline may be substituted for proline
- 5-hydroxylysine may be substituted for lysine
- 3-methylhistidine may be substituted for histidine
- homoserine may be substituted for serine
- ornithine may be substituted for lysine.
- Polypeptides of the present invention also include any polypeptide having one or more additions and/or deletions or residues relative to the sequence of a polypeptide whose sequence is shown herein, so long as the requisite activity is maintained.
- fragment means any subject peptide or polypeptide having an amino acid residue sequence shorter than that of a peptide or polypeptide whose full length amino acid residue sequence is shown herein.
- a pharmaceutically acceptable salt is one which is prepared by contacting a compound of formulas (I) - (X) according to the specifications therein with an acid whose anion is generally considered suitable for human consumption.
- pharmacologically acceptable acid addition salts include the hydrochloride, hydrobromide, hydroiodide, sulfate, phosphate, acetate, propionate, lactate, maleate, alate, succinate, and tartrate salts. All of these salts may be prepared by conventional means by reacting, for example, the appropriate acid with the corresponding compound of structure of Formulas (I) - (X) .
- the preparation methods disclosed herein result in product distributions which include all possible structural isomers. It is understood that physiological response may vary according to stereochemical structure.
- the isomers may be separated by conventional means such as fractional crystallization or High Pressure Liquid Chromatography (HPLC) .
- HPLC High Pressure Liquid Chromatography
- the absolute configuration of a compound relates to how its substituents are oriented in space about a central atom. This notion becomes significant when coupled with the rigors of chirality. Chirality involves the identity of the substituents " about that central atom.
- a compound is said to be chiral when four distinctly different groups are bound to a central carbon atom. These groups may be spatially aligned in more than one manner without repeating their individual orientations. That is, a chiral compound may exhibit a mirror image which is also chiral . These mirror images are termed meso configurations, and are each absolute configurations of a chiral compound.
- compositions according to the present invention comprise one or more peptides and/or peptidomimetics of the invention in association with a pharmaceutically acceptable carrier or excipient, adapted for use in human or veterinary medicine.
- the compositions may contain from 0.001-99% of the active material. Such compositions may be presented for use in conventional manner in admixture with one or more physiologically acceptable carriers of excipients.
- the pharmaceutical compositions according to the invention may also contain other active ingredients such as antimicrobial agents, or preservatives.
- the compositions may optionally further contain one or more other therapeutic agents which may, if desired, be a chemotherapeutic antiviral agent.
- compositions of the peptides of this invention may be formed conventionally by reaction with an appropriate acid.
- the addition salts so formed from addition by acid may be identified by hydrochloric, hydrobromic, phosphoric, acetic, fumaric, salicylic, citric, lactic, mandelic, tartaric, oxalic, methanesulfonic, and the like.
- the peptides and peptidomimetics according to the present invention may be formulated for oral, buccal, parenteral, topical or rectal administration.
- these peptides and peptidomimetics may be formulated for injection or for infusion and may be presented in unit dose form in ampoules or in multidose containers with an added preservative.
- the compositions may take such forms as suspensions, solutions, or emulsions in oily or aqueous vehicles, and may contain formulatory agents such as suspending, stabilizing and/or dispersing agents.
- the active ingredient may be in powder form for constitution with a suitable vehicle, e.g. sterile, pyrogen-free water, before use.
- the present invention further provides a process for preparing a pharmaceutical composition which comprises bringing a peptide and/or peptidomimetic of the invention into association with a pharmaceutically acceptable excipient or carrier.
- the daily dosage as employed for treatment of an adult human of approximately 70 kg body weight will range from 0.01 mg to 10 mg of each active ingredient, preferably 0.1 to 5 mg, which may be administered in 1 to 4 doses, for example, depending on the route of administration and the condition of the patient.
- the dosage of the peptide used in the treatment will vary, depending on the seriousness of the disorder, the weight of the patient, the relative efficacy of the peptide and the judgment of the treating physician.
- suitable unit dosages in humans may be between about 0.05 mg to about 100 mg.
- a unit dosage may be from between about 0.2 mg to about 50 mg.
- Such a unit dosage, described hereinabove may be administered more than once a day, e g., two or three times a day.
- the total daily dosage is in the range of about 0.01 mg to 10 mg/kg.
- Such therapy may extend for several weeks, in an intermittent or uninterrupted manner, until the patient's symptoms are eliminated.
- compositions which comprise a pharmaceutically effective amount of the one or more peptides and/or peptidomimetics of this invention, or pharmaceutically acceptable salts thereof, and, preferably, a pharmaceutically acceptable carrier or adjuvant.
- Therapeutic methods of this invention comprise the step of treating patients in a pharmaceutically acceptable manner with those peptides or compositions.
- Such compositions may be in the form of tablets, capsules, caplets, powders, granules, lozenges, suppositories, reconstitutable powders, or liquid preparations, such as oral or sterile parenteral solutions or suspensions.
- a composition ' of the invention is in the form of a unit dose.
- the unit dose presentation forms for oral administration may be tablets and capsules and may contain conventional expedients.
- binding agents such as acacia, gelatin, sorbitol, or polyvinylpyrrolidone
- fillers such as lactose, sugar, maize-starch, calcium phosphate, sorbitol or glycine
- tabletting lubricants such as magnesium stearate
- disintegrants such as starch, polyvinylpyrrolidone, sodium starch glycolate or microcrystalline cellulose
- pharmaceutically acceptable wetting agents such as sodium lauryl sulfate.
- the solid oral compositions may be prepared by conventional methods of blending, filling, tabletting, or the like. Repeated blending operations may be used to distribute the active agent throughout those compositions employing large quantities of fillers. Such operations are, of course, conventional in the art.
- the tablets may be coated according to methods well-known in normal pharmaceutical practice, in particular with an enteric coating.
- Oral liquid preparations may be in the form of emulsions, syrups, or elixirs, or may be presented as a dry product for reconstitution with water or other suitable vehicle before use. Such liquid preparations may or may not contain conventional additives.
- suspending agents such as sorbitol, syrup, methyl cellulose, gelatin, hydroxyethylcellulose, carboxymethylcellulose, aluminum stearate gel, or hydrogenated edible fats
- emulsifying agents such as sorbitan monooleate or acacia
- non-aqueous vehicles which may include edible oils
- non-aqueous vehicles such as almond oil, fractionated coconut oil, oily esters selected from the group consisting of glycerine, propylene glycol, ethylene glycol, and ethyl alcohol
- preservatives for instance methyl para-hydroxybenzoate, ethyl para-hydroxybenzoate, n-propyl parahydroxybenzoate, or n-butyl parahydroxybenzoate or sorbic acid
- conventional flavoring or coloring agents such as sorbitol, syrup, methyl cellulose, gelatin, hydroxyethylcellulose, carboxymethylcellulose, aluminum stearate gel, or hydrogenated edible fats
- emulsifying agents
- fluid unit dosage forms may be prepared by utilizing the peptide and a sterile vehicle, and, depending on the concentration employed, may be either suspended or dissolved in the vehicle.
- the peptides of this invention may be dissolved in water, whereas opiates used heretofore showed only marginal solubility in aqueous media or physiological fluids.
- the peptide may be injected and filter sterilized before filling a suitable vial or ampoule and subsequently sealing the carrier or storage package.
- Adjuvants such as a local anaesthetic, a preservative or a buffering agent, may be dissolved in the vehicle prior to use.
- Stability of the pharmaceutical composition may be enhanced by freezing the composition after filling the vial and removing the. water under vacuum, e.g., freeze drying the composition.
- Parenteral suspensions may be prepared in substantially the same manner, except that the peptide should be suspended in the vehicle rather than being dissolved.
- a surfactant or wetting solution may be advantageously included in the composition to facilitate uniform distribution of the peptide.
- the stability of the peptides and cyclized peptides of the present invention exceeds that of naturally occurring peptides if substitution is made with D-amino acids in at least 20%, but not more than 50%, of those residues which are naturally present in the (L) configuration.
- the enhanced stability of the peptides of this invention may also be the result of the introduction of modifications of traditional peptide linkages.
- the introduction of a cyclic ring within the peptide backbone may confer enhanced stability in order to circumvent the effect of many proteolytic enzymes known to digest small peptides in the stomach or other digestive organs and in serum.
- the compounds of the " present invention are initially synthesized by either solution or by solid phase techniques. Specific exemplary syntheses are described in the examples hereinbelow.
- the peptides of this invention may be prepared by initially reacting a first appropriately protected amino acid with a second appropriately protected amino acid in an organic solvent inert to the reactants, in the presence of a suitable peptide coupling agent according to the following scheme:
- Z (l)NH-AA(l) -COOH + coupling agent + NH 2 -AA(2) -COOZ (2) Z(l) -NH-AA(l) -CONH-AA(2) -COOZ (2) wherein Z(l) is a suitable nitrogen protecting group and Z(2) is a suitable carboxyl protecting group and AA represents any natural or unnatural amino acid residue.
- the desired peptides may be prepared by utilizing the appropriate amino acids and repeating this reaction sequence as required until a peptide with three to ten amino acid residues has been prepared. A suitable deprotection method is then employed to remove specified or all of the remaining protecting groups or the peptide from the resin.
- the first appropriately protected amino acid and, for instance, an appropriately protected tyrosine may be reacted together in the presence of a suitable peptide coupling agent in a suitably inert organic solvent with stirring, shaking, or agitation to form a protected tyrosine containing dipeptide.
- a suitable peptide coupling agent in a suitably inert organic solvent with stirring, shaking, or agitation to form a protected tyrosine containing dipeptide.
- Introducing this dipeptide to appropriate protecting group removal conditions affords a selectively deprotected dipeptide which is well-suited for continued peptide synthesis.
- Contacting this mono-deprotected tyrosine containing dipeptide with an appropriately protected amino acid having a side chain represented as above, in the presence of a suitable peptide coupling agent in a suitably inert organic solvent with stirring, shaking, or agitation forms a protected tyrosine containing tripeptide. This method may be repeated as many times as necessary to achieve
- the method of preparation for peptide synthesis requires specific functional groups to react with other substituents to link amino acid residues in a desired manner to form a peptide possessing a known and desired sequence of amino acid residues. Since amino acids possess at least two reactive functional groups, suitable protection, blocking, or masking of these groups is required to ensure that reaction will occur only at specifically desired sites.
- protecting groups should be introduced to the moiety efficaciously while their removal should be performed under conditions which do not affect other portions of the molecule. In this manner, certain reactions and modifications may be performed on the amino acid, peptide, or other compound, with assurance that the protected functionality will not interfere with the desired reaction. Further, by choosing a protecting group that is sensitive and labile to certain reactive conditions, a reaction scheme may be outlined to advantageously utilize these characteristics to effectively remove the protecting group once the synthesis is complete.
- N-protecting groups and COOH-protecting groups may be used within the scope of this invention.
- a variety of protecting groups known in the field of peptide synthesis and recognized by conventional abbreviations therein, may be found in T. Greene, Protective Groups In Organic Synthesis, Academic Press (1981) .
- the preferred protecting groups that may be utilized for suitable protection of reactive nucleophilic substituents include, for example, benzyl (Bz) , carbobenzyloxy (Cbz) , t-butoxycarbonyl (Boc) , or 9-fluorenylmethyloxy-carbonyl (Fmoc) .
- Coupling of amino acids which may be the same or different as those described above, to yield small peptides in route to peptides comprised of greater numbers of amino acid residues may be accomplished by employing established techniques in the field of peptide chemistry. A broad range of suitable reactions are described in E. Gross and J. Meinhofer, The Peptides: Analysis, Synthesis, Biology; Modern Techniques of Peptide and Amino Acid Analysis, John Wiley & Sons, (1981) and M. Bodanszky, Principles Of Peptide Synthesis, Springer-Verlag (1984) .
- the peptide coupling agents which may be used to assist condensation of amino and carboxyl i c ac i d mo i et i e s inc lude
- CDI 1-hydroxy benzotriazole
- HOBt 1-hydroxy benzotriazole
- EEDQ 2-dihydroquinoline
- BOP benzotriazoyl-oxy-tris- (dimethyl) amino-phosphonium hexafluoro phosphate
- the DCC reaction is often performed at room temperature but may be carried out from about -78 °C to gentle reflux in a variety of solvents that are inert with respect to the reactants.
- the solvents are normally organic solvents which are polar and aprotic.
- Preferred solvents include, for example, dichloromethane, chloroform, diethyl ether, tetrahydrofuran
- the coupling reaction may be carried out at atmospheric pressure a temperature of -78 °C to reflux for a period of between 1 and 48 hours.
- the reaction is carried out at about -10° C to 25° C with stirring, shaking or agitation, over a period of between 4 and 6 hours.
- synthesis may be achieved prepared using solid phase synthesis, such as that described by Merrifield, J Am. Chem. Soc. , 85, p 2149 (1964), although other equivalent chemical syntheses known in the art can also be used.
- Solid-phase synthesis is commenced from the C-terminus of the peptide by coupling a protected alpha-amino acid to a suitable resin as generally set forth in U.S. Pat. No. 4,244,946.
- a protected alpha-amino acid to a suitable resin as generally set forth in U.S. Pat. No. 4,244,946.
- He protected by BOC is coupled to the a BHA resin using methylene chloride and dimethylformamide .
- the alpha-amino protecting group is removed, as by using trifluoroacetic acid
- TFA in methylene chloride
- TFA alone or with HCl in dioxane Preferably 50 volume % TFA in methylene chloride is used with 0-5 weight % 1,2 ethanedithiol.
- the deprotection is carried out at a temperature between about 0° C and room temperature.
- Other standard cleaving reagents and conditions for removal of specific alpha-amino protecting groups may be used as described in Schroder & Lubke, The Peptides, pp 72-75 (Academic Press 1965) .
- the remaining alpha-amino- and side chain-protected amino acids are coupled step-wise in the desired order to obtain the intermediate compound defined hereinbefore.
- some of them may be coupled to one another prior to addition to the solid phase reactor. The selection of an appropriate coupling reagent is within the skill of the art.
- coupling reagents are N,N' -dicyclohexyl carbodiimide (DCC) and N, N ' -diisopropyl carbodiimide ( D I C I ) , or N-ethyl-N' - (3-dimethylaminopropyl) carbodiimide.
- DCC N,N' -dicyclohexyl carbodiimide
- D I C I N, N ' -diisopropyl carbodiimide
- N-ethyl-N' - (3-dimethylaminopropyl) carbodiimide N-ethyl-N' - (3-dimethylaminopropyl) carbodiimide.
- Other activating reagents and their use in peptide coupling are described by Schroder & Lubke, supra , in Chapter III and by Kapoor (1970) J. Phar. Sci. .59:127.
- Each protected amino acid or amino acid sequence is introduced into the solid phase reactor in about a fourfold excess, and the coupling is carried out in a medium of dimethylformamide: dichloromethane (1:1) or in DMF or dichloromethane alone.
- the coupling is carried out manually, the success of the coupling reaction at each stage of the synthesis is monitored by the ninhydrin reaction, as described by E. Kaiser et al . (1970) Anal. Biochem. 3_4:595.
- the coupling procedure is repeated before removal of the alpha-amino protecting group prior to the coupling of the next amino acid.
- the coupling reactions can be performed automatically, as on a Applied Biosystems automatic synthesizer.
- the intermediate peptide is removed from the resin support by treatment with a reagent, such as liquid hydrogen fluoride, which not only cleaves the peptide from the resin but also cleaves all remaining side chain protecting groups and the alpha-amino protecting group (unless it is an acyl group which is intended to be present in the final peptide) to obtain the peptide.
- a reagent such as liquid hydrogen fluoride
- anisole or cresol and methylethyl sulfide are included in the reaction vessel as scavengers.
- the BOC protecting group may be cleaved with trifluoroacetic acid (TFA) /ethanedithiol prior to cleaving the peptide from the resin to eliminate potential S-alkylation.
- the synthesis of the peptide of SEQ ID NO:l is conducted in a stepwise manner on a MBHA hydrochloride resin, such as available from Bachem, Inc. (Torrance, CA) having a substitution range of about 0.1 to 0.5 mmoles/gm. resin.
- a MBHA hydrochloride resin such as available from Bachem, Inc. (Torrance, CA) having a substitution range of about 0.1 to 0.5 mmoles/gm. resin.
- DIPEA DIPEA
- PIP piperidine
- DCC dicyclohexylcarbodiimide
- HOBt 1-hydroxybenzotriazole
- BOP [benzotriazole-1-yl- oxy-tris (dimethyl) phosphonium hexafluorophosphate]
- the synthesis is performed on an Applied Biosystems peptide synthesizer (Foster City, CA) using a suitable program, preferably as follows:
- the peptide chain is built stepwise on the resin. Generally, one to two mmol. of BOC-protected amino acid in methylene chloride is used per gram of resin, plus one equivalent of 2 M DCC in methylene chloride, for two hours.
- BOC-Arg(Tos) is being coupled, a mixture of 50% DMF and methylene chloride is used.
- Bzl is used as the hydroxyl side-chain protecting group for Ser and Thr.
- p-nitrophenyl ester (ONp) can be used to activate the carboxyl end of Asn or Gin; for example, BOC-Asn(ONp) can be coupled overnight using one equivalent of HOBt in a 50% mixture of DMF and methylene chloride.
- the amido group of Asn or Gin is protected by Xan when DCC coupling is used instead of the active ester method.
- 2-Cl-CBZ is used as the protecting group for the Lys side chain.
- Tos is used to protect the guanidine group of Arg and the imidazole group of His, and the side-chain carboxyl group of Glu or Asp is protected by OBzl.
- the resin-peptide is washed alternately with dry diethyl ether and chloroform, and the peptides are then extracted with degassed 2 N aqueous acetic acid and separated from the resin by filtration on a Hirsch funnel.
- the peptide is purified by gel permeation followed by preparative HPLC as described in Marki et al . (1981) J. Am. Chem. Soc. 103 :3178; Rivier, et al. (1984) J. Chromatography 288 : 303-328 ; and Hoeger, et al . (1987) BioChromatography 2 . :134-142.
- the chromatographic fractions are carefully monitored by HPLC (see below) , and only the fractions showing substantial purity are pooled.
- the peptide is hydrolyzed in sealed evacuated tubes containing constant boiling HCl, 3 ⁇ l of thioglycol/ml and 1 nmol of Nle (as an internal standard) for 9 hours at 140 °C.
- Amino acid analysis of the hydrolysates using a Beckman 121 amino acid analyzer to determine amino acid ratios allows confirmation that the desired peptide structure has been obtained.
- Cyclization "traps" the bioactive conformation of the peptide by making the active conformation part of a ring system that allows it much less conformational flexibility.
- aspartate or glutamate residues are introduced into the sequence either in place of non-essential amino acid residues or as added residues in the chain.
- the new peptide is then subjected to electro-oxidation in which the two residues are decarboxylated, in an intramolecular Kolbe electro-oxidative coupling reaction, resulting in the joining of their respective - CH 2 groups, forming a ring as shown in Fig. 1.
- This method has been used to make a cyclized /S-bend of the dipeptide, Pro-Gly, by placing a glutamic acid residue on the amino and carboxyl ends of this dipeptide and then performing the Kolbe electro-oxidation to form the tetra- (CH 2 ) -bridge.
- the Pro-Gly peptide which has a variety of conformations in solution, when cyclized, was found to adopt the ⁇ -bend structure uniquely (Joran, A. , "Conformationally restricted biologically active peptides, methods for their production and uses thereof," U.S. Patent No.
- Scheme I illustrates an exemplary result of using electrolytic decarboxylation to cyclize peptides to trap them in their active conformations.
- Either two gultamate, two aspartate, or one glutamate and one aspartate residues are introduced in the chain represented by the wavy line.
- a tetramethylene bridge forms cyclizing the region of the peptide that is to be held fixed in its bioactive conformation.
- the two connected residues shown constitute the diamino suberic acid moiety. It should be noted that, in the synthesis of this new peptide, there are possibly other aspartate and glutamate amino acid residues that can undergo the oxidative decarboxylation.
- the electrooxidative coupling reaction used to prepare the cyclic peptides of the invention can be performed in a divided or an undivided cell such as a standard glass H-cell, as described in Organic Electrochemistry (2nd Ed.) , M. Baizer and H. Lund, eds., Marcel Dekker, New York, 1983, Chap. 5, p 168.
- the reaction can be carried out in a plate and frame flow cell as described in Technique of Electroorqanic Synthesis. Part III, N. Weinberg and B. Tilak, ed. , John Wiley & Sons, New York, 1982, Chap. Ill, p 179.
- Cathode materials useful for the preparation of the compounds of the invention include, but are not limited to, high hydrogen overvoltage materials such as mercury, lead or cadmium.
- Anode materials include, but are not limited to, materials such as mercury, lead, graphite, or graphite paste, which are stable under electrolysis conditions.
- the electrooxidative coupling can occur in aqueous, or aqueous organic electrolytes, comprising solutions of Bronsted acids, such as sulfuric, fluoroboric, and trifluoroacetic acids. Any electrolyte may be selected that has sufficient acid strength to render a basic starting material protonated. A dilute solution of trifluoroacetic acid is most preferred.
- Typical current densities are between 1 and 5000 illiamps (mA) /cm 2 , preferably between 10 and 100 mA/cm 2 .
- the reaction is preferably carried out at a temperature in the range of about 0 °C to 37 °C, more preferably about 10 °C.
- a standard glass H-cell 200 ml volume, glass frit separator was equipped with a mercury pool cathode 12 cm 2 area) , a magnetic stirrer, and a platinum foil anode.
- the cell reservoir was filled with 40 mM trifluoroacetic acid (110 ml) and placed in a water bath maintained at 10 °C.
- the catholyte was purged with nitrogen.
- the starting peptide (20 mg) was added to the catholyte and constant current electrolysis was initiated at 0.1 A.
- the reaction progress was followed by HPLC and after passage of 1,060 coulombs, all the substrate had been consumed and the electrolysis was terminated.
- the catholyte was recovered and adjusted to pH 8 with NaOH.
- the pH-adjusted catholyte was extracted with chloroform (2 times 70 ml) .
- the extract was freeze dried and the resultant powdery material extracted with acetonitrile (HPLC grade) .
- Buffer A is an aqueous 0.1% (vol/vol) trifluoroacetic acid solution (1.0 ml of TFA per 1000 Ml solution) ; Buffer B is 100% acetonitrile. The determination is run at room temperature with a gradient from 15.5% Buffer B to 75% Buffer B over a 30 min. The flow rate is 2.2 ml per minute, and the retention time is 25.0 min.
- the structure was confirmed by 300 MHz X H NMR, 13 C NMR, and electrospray mass spectroscopy.
- the amounts of the reactants and the conditions required to facilitate reaction and encourage efficient completion of the aforementioned Examples may vary widely. However, in general, the amounts of material employed to induce reaction in the processes discussed above will be substantially stoichiometric, unless otherwise specified. In the following examples, reaction concentrations are generally held at 0.1 M for the reactants, unless a higher concentration or dilution would be particularly useful for influencing the direction of a specific reaction. In practice, the amounts used will depend upon variations in reaction conditions and the nature of the reactants as readily apparent to one of ordinary skill in the art .
- the desired products may be isolated from the reaction mixture by crystallization.
- chromatographic techniques including, but not limited to, normal phase, reverse phase, ion-exchange, affinity, or gel permeation, may be employed, as well as electrophoresis or extraction or other means.
- test peptides, cyclized peptides and/or peptidomimetics are injected into immature oocytes at various doses.
- the oocytes are co-injected with recombinant transforming ras p21 obtained from the National Cancer Institute of Japan.
- the oncogenic ras p21 can be prepared by the ordinary skilled artisan without the expense of undue experimentation as described in Chung et al . (1991) supra and in Chung et al . (1992) Exp. Cell . Res .
- the maturation of the oocytes is evaluated microscopically at low power (20 X) , using a Nikon Diaphot microscope, for example. Percent inhibition is calculated based on comparisons with oocytes which are injected with 0.05 mg/ml oncogenic ras p21. The following results were obtained using a dose of each peptide equivalent to an internal oocyte concentration of 50 nM:
- the peptidomimetics and cyclic peptides of the present invention will be similarly effective in inhibiting oocyte maturation in response to the oncogenic ras p21 protein, and in inhibiting oncogenesis.
- a representative peptidomimetic of the present invention is synthesized according to Scheme II, as further described hereinbelow.
- R' tBiiQ-CCH-C O
- Steroid 1 was commercially available, and used without further purification.
- Mono-t-butylmalonate was prepared by literature methods [Brunwin, D.M.; et al. (1971) J. Chem . Soc . C. 3756] .
- THF was distilled from sodium/benzophenone under Ar.
- Methylene chloride and ethanol (absolute) were distilled from CaH2 under Ar.
- Benzylchloroformate and n-propyl alcohol are commercially available, and used without further purification or drying. All reactions performed under an atmosphere of Ar unless otherwise noted.
- the quenched reaction was extracted twice with CHCI 3 (50 mL) , and the extracts were washed with brine, dried over Na 2 SO Reference, filtered, and concentrated.
- the yield of a vanilla colored solid was 723 mg.
- the material was purified by flash chromatrography on silica in CHCl 3 /MeOH (3:2) to give 577 mg (79%) of a vanilla colored solid.
- the product can be recrystallized from EtOAc.
- N- (benzyloxy carbonyl) -5- ⁇ -6- ⁇ -amino-3-j3-hydroxycholestane (4) The amine 3 (465 mg. 1.15 mmol) and anhydrous K 2 C0 3 (457 mg, 3.3 mmol) were stirred in dry THF (4 mL) , and cooled to 0°C in an ice-water bath. Benzyl-chloroformate (0.16 mL, 1.15 mmol) was added dropwise, and the reaction was stirred at 0°C for 15 min, then at room temperature for 6h. The reaction was diluted with water and poured into saturated ⁇ aHC0 3 (15 mL) . A thick, flocculent white precipitate formed.
- the aqueous mixture was extracted with CHC1 3 (20 mL) , and the aqueous layer was saturated with NaCl and extracted with CHC1 3 (5x20 mL) .
- the organic extracts were washed with brine (40 mL) , dried over Na 2 S0 4 , filtered, and concentrated.
- the yield of crude material was 649 mg of a tan solid.
- the material was flash chromatographed on silica in Hex/EtOAc (1:1) , (using a little CHC1 3 to help dissolve material) to give 546 mg (88%) of a white solid.
- N- (benzyloxy carbonyl) -5- -6-or-aunino-3-3-mono-t-butyl malonyl cholestane (5) The amine 4 (144.4 mg, 0.27 mmol), mono-t-butyl malonate (107.7 mg, 0.67 mmol) , and DMAP were dissolved in dry CH 2 C1 2 (1.2 mL) , and stirred efficiently at room temperature. DCC (67.4 dmg, 0.33 mmol) was added in one portion under a stream of Ar. The reaction was stirred at room temperature for 23h, then diluted with ether, and filtered through a pad of Celite (a white solid remains on the pad) .
- N-CBZ group of 5 was cleanly removed by hydrogenolysis using 10% palladium on carbon under a hydrdogen atmosphere to give 6 in 93% yield.
- Trials employing 1,4-cyclohexadiene as the hydrogen source [Felix et al . (1978) J " . Org. Chem . 4 . 3:4194] produced 6 in only 23% yield, even when a large excess of the diene was used. Longer reaction time did not improve the yield.
- 5-a-6-a-amino-3-3-mono-t-butyl malonyl cholestane (6) 5 (200.7 mg, 0.3 mmol) and 10% palladium on carbon (194 mg) were stirred vigorously in abs.
- MOLECULE TYPE peptide
- HYPOTHETICAL NO
- SEQUENCE DESCRIPTION SEQ ID NO:l: lie Lys Arg Val Lys Asp 1 5
- MOLECULE TYPE protein
- HYPOTHETICAL NO
- Val Phe Ala lie Asn Asn Thr Lys Ser Phe Glu Asp lie His Gin Tyr 85 90 95
- ORGANISM Arabidopsis thaliana
- MOLECULE TYPE protein
- HYPOTHETICAL NO
- ORGANISM Arabidopsis thaliana
- ORGANISM Arabidopsis thaliana
- xi SEQUENCE DESCRIPTION: SEQ ID NO:12:
- ORGANISM Discopyge ommata
- ORGANISM Oryctolagus cuniculus
- ORGANISM Caenorhabditis elegans
- xi SEQUENCE DESCRIPTION: SEQ ID NO:21:
- ORGANISM Dictyosteliu discoideum
- ORGANISM Dictyostelium discoideum
- ORGANISM Caenorhabditis elegans
- ORGANISM Dictyostelium discoideum
- ORGANISM Dictyostelium discoideum
- ORGANISM Dictyostelium discoideum
- Lys Lys Met Ser Glu Asn Lys Asp Lys Asn Gly Lys Lys Ser Ser Lys 180 185 190
- ORGANISM Discopyge ommata
Abstract
Description
Claims
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
AU73668/96A AU7366896A (en) | 1995-09-21 | 1996-09-20 | Peptides and peptidomimetics inhibiting the oncogenic action of p21 ras |
Applications Claiming Priority (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US409195P | 1995-09-21 | 1995-09-21 | |
US60/004,091 | 1995-09-21 | ||
US08/531,525 | 1995-09-21 | ||
US08/531,525 US5840683A (en) | 1995-09-21 | 1995-09-21 | Peptides inhibiting the oncogenic action of p21 ras |
Publications (1)
Publication Number | Publication Date |
---|---|
WO1997010836A1 true WO1997010836A1 (en) | 1997-03-27 |
Family
ID=26672587
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US1996/015098 WO1997010836A1 (en) | 1995-09-21 | 1996-09-20 | Peptides and peptidomimetics inhibiting the oncogenic action of p21 ras |
Country Status (3)
Country | Link |
---|---|
AU (1) | AU7366896A (en) |
CA (1) | CA2232750A1 (en) |
WO (1) | WO1997010836A1 (en) |
Cited By (17)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6022326A (en) * | 1998-10-30 | 2000-02-08 | Lifepoint, Inc. | Device and method for automatic collection of whole saliva |
JP2005529882A (en) * | 2002-04-19 | 2005-10-06 | アンスティテュ ナショナル ドゥ ラ サン エ ドゥ ラ ルシュルシェ メディカル | Aminoalkyl sterol compounds having antitumor and neuroprotective activity |
US8080517B2 (en) | 2005-09-12 | 2011-12-20 | Xigen Sa | Cell-permeable peptide inhibitors of the JNK signal transduction pathway |
US8183339B1 (en) | 1999-10-12 | 2012-05-22 | Xigen S.A. | Cell-permeable peptide inhibitors of the JNK signal transduction pathway |
US8236924B2 (en) | 1999-10-12 | 2012-08-07 | Xigen Sa | Cell-permeable peptide inhibitors of the JNK signal transduction pathway |
US8748395B2 (en) | 2005-09-12 | 2014-06-10 | Xigen Inflammation Ltd. | Cell-permeable peptide inhibitors of the JNK signal transduction pathway |
US8981052B2 (en) | 2010-06-21 | 2015-03-17 | Xigen Inflammation Ltd. | JNK inhibitor molecules |
US9006185B2 (en) | 2008-05-30 | 2015-04-14 | Xigen Inflammation Ltd. | Use of cell-permeable peptide inhibitors of the JNK signal transduction pathway for the treatment of various diseases |
US9150618B2 (en) | 2010-10-14 | 2015-10-06 | Xigen Inflammation Ltd. | Use of cell-permeable peptide inhibitors of the JNK signal transduction pathway for the treatment of chronic or non-chronic inflammatory eye diseases |
US9180159B2 (en) | 2008-05-30 | 2015-11-10 | Xigen Inflammation Ltd. | Use of cell-permeable peptide inhibitors of the JNK signal transduction pathway for the treatment of chronic or non-chronic inflammatory digestive diseases |
US20160151456A1 (en) * | 2011-05-25 | 2016-06-02 | The United States Of America, As Represented By The Secretary, Department Of Health And Human Serv | Lipopeptide inhibitors of ras oncoproteins |
US10023615B2 (en) | 2008-12-22 | 2018-07-17 | Xigen Inflammation Ltd. | Efficient transport into white blood cells |
US10596223B2 (en) | 2011-12-21 | 2020-03-24 | Xigen Inflammation Ltd. | JNK inhibitor molecules for treatment of various diseases |
US10624948B2 (en) | 2013-06-26 | 2020-04-21 | Xigen Inflammation Ltd. | Use of cell-permeable peptide inhibitors of the JNK signal transduction pathway for the treatment of various diseases |
US11331364B2 (en) | 2014-06-26 | 2022-05-17 | Xigen Inflammation Ltd. | Use for JNK inhibitor molecules for treatment of various diseases |
CN114409737B (en) * | 2022-02-24 | 2023-04-25 | 南阳师范学院 | Novel antitumor peptide and application thereof |
US11779628B2 (en) | 2013-06-26 | 2023-10-10 | Xigen Inflammation Ltd. | Use of cell-permeable peptide inhibitors of the JNK signal transduction pathway for the treatment of various diseases |
-
1996
- 1996-09-20 WO PCT/US1996/015098 patent/WO1997010836A1/en active Application Filing
- 1996-09-20 CA CA 2232750 patent/CA2232750A1/en not_active Abandoned
- 1996-09-20 AU AU73668/96A patent/AU7366896A/en not_active Abandoned
Non-Patent Citations (1)
Title |
---|
ANTICANCER RESEARCH, Volume 11, No. 4, issued 1991, CHUNG et al., "A Peptide from the GAP-Binding Domain of the Ras-p21 Protein and Azatyrosine Block Ras - Induced Maturation of Xenopus Oocytes", pages 1373-1378. * |
Cited By (25)
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US6022326A (en) * | 1998-10-30 | 2000-02-08 | Lifepoint, Inc. | Device and method for automatic collection of whole saliva |
US8183339B1 (en) | 1999-10-12 | 2012-05-22 | Xigen S.A. | Cell-permeable peptide inhibitors of the JNK signal transduction pathway |
US8236924B2 (en) | 1999-10-12 | 2012-08-07 | Xigen Sa | Cell-permeable peptide inhibitors of the JNK signal transduction pathway |
US8278413B2 (en) | 1999-10-12 | 2012-10-02 | Xigen Sa | Cell-permeable peptide inhibitors of the JNK signal transduction pathway |
US8569447B2 (en) | 1999-10-12 | 2013-10-29 | Xigen Sa | Cell-permeable peptide inhibitors of the JNK signal transduction pathway |
JP2005529882A (en) * | 2002-04-19 | 2005-10-06 | アンスティテュ ナショナル ドゥ ラ サン エ ドゥ ラ ルシュルシェ メディカル | Aminoalkyl sterol compounds having antitumor and neuroprotective activity |
US7947668B2 (en) | 2002-04-19 | 2011-05-24 | Institut National De La Sante Et De La Recherche Medicale | Aminoalkyl sterol compounds having an anti-tumoral and neuroprotective activity |
US8524694B2 (en) | 2002-04-19 | 2013-09-03 | Institut National De La Sante Et De La Recherche Medicale (Inserm) | Aminoalkylsterol compounds with antitumoral and neuroprotective activity |
US8957055B2 (en) | 2002-04-19 | 2015-02-17 | Institut National De La Sante Et De La Recherche Medicale (Inserm) | Aminoalkylsterol compounds with antitumoral and neuroprotective activity |
US8080517B2 (en) | 2005-09-12 | 2011-12-20 | Xigen Sa | Cell-permeable peptide inhibitors of the JNK signal transduction pathway |
US8748395B2 (en) | 2005-09-12 | 2014-06-10 | Xigen Inflammation Ltd. | Cell-permeable peptide inhibitors of the JNK signal transduction pathway |
US9290538B2 (en) | 2005-09-12 | 2016-03-22 | Xigen Inflammation Ltd. | Cell-permeable peptide inhibitors of the JNK signal transduction pathway |
US9006185B2 (en) | 2008-05-30 | 2015-04-14 | Xigen Inflammation Ltd. | Use of cell-permeable peptide inhibitors of the JNK signal transduction pathway for the treatment of various diseases |
US9180159B2 (en) | 2008-05-30 | 2015-11-10 | Xigen Inflammation Ltd. | Use of cell-permeable peptide inhibitors of the JNK signal transduction pathway for the treatment of chronic or non-chronic inflammatory digestive diseases |
US9610330B2 (en) | 2008-05-30 | 2017-04-04 | Xigen Inflammation Ltd. | Use of cell-permeable peptide inhibitors of the JNK signal transduction pathway for the treatment of various diseases |
US10023615B2 (en) | 2008-12-22 | 2018-07-17 | Xigen Inflammation Ltd. | Efficient transport into white blood cells |
US8981052B2 (en) | 2010-06-21 | 2015-03-17 | Xigen Inflammation Ltd. | JNK inhibitor molecules |
US9624267B2 (en) | 2010-06-21 | 2017-04-18 | Xigen Inflammation Ltd. | JNK inhibitor molecules |
US9150618B2 (en) | 2010-10-14 | 2015-10-06 | Xigen Inflammation Ltd. | Use of cell-permeable peptide inhibitors of the JNK signal transduction pathway for the treatment of chronic or non-chronic inflammatory eye diseases |
US20160151456A1 (en) * | 2011-05-25 | 2016-06-02 | The United States Of America, As Represented By The Secretary, Department Of Health And Human Serv | Lipopeptide inhibitors of ras oncoproteins |
US10596223B2 (en) | 2011-12-21 | 2020-03-24 | Xigen Inflammation Ltd. | JNK inhibitor molecules for treatment of various diseases |
US10624948B2 (en) | 2013-06-26 | 2020-04-21 | Xigen Inflammation Ltd. | Use of cell-permeable peptide inhibitors of the JNK signal transduction pathway for the treatment of various diseases |
US11779628B2 (en) | 2013-06-26 | 2023-10-10 | Xigen Inflammation Ltd. | Use of cell-permeable peptide inhibitors of the JNK signal transduction pathway for the treatment of various diseases |
US11331364B2 (en) | 2014-06-26 | 2022-05-17 | Xigen Inflammation Ltd. | Use for JNK inhibitor molecules for treatment of various diseases |
CN114409737B (en) * | 2022-02-24 | 2023-04-25 | 南阳师范学院 | Novel antitumor peptide and application thereof |
Also Published As
Publication number | Publication date |
---|---|
AU7366896A (en) | 1997-04-09 |
CA2232750A1 (en) | 1997-03-27 |
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