NZ733261A - Anti-cd47 antibodies and uses thereof - Google Patents
Anti-cd47 antibodies and uses thereofInfo
- Publication number
- NZ733261A NZ733261A NZ733261A NZ73326115A NZ733261A NZ 733261 A NZ733261 A NZ 733261A NZ 733261 A NZ733261 A NZ 733261A NZ 73326115 A NZ73326115 A NZ 73326115A NZ 733261 A NZ733261 A NZ 733261A
- Authority
- NZ
- New Zealand
- Prior art keywords
- antibody
- amino acid
- antibodies
- seq
- human
- Prior art date
Links
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Abstract
Provided herein are compositions, methods and uses involving antibodies that specifically bind to human CD47. Also provided are uses and methods, such as therapeutic methods, diagnostic methods, and methods of making such antibodies.
Description
ANTI-CD47 ANTIBODIES AND USES THEREOF
This application claims benefit of US. Provisional Patent Application No. 62/098,291,
filed December 30, 2014, the disclosure of which is incorporated by reference herein in its
entirety.
nce to Sequence Listing Submitted Electronically
This application incorporates by reference a Sequence Listing submitted with this
application as text file entitled “Sequence_Listing_l2827228.txt” created on er 27,
2015 and having a size of 87,612 bytes.
1. FIELD
Provided herein are dies (anti—CD47 antibodies) which specifically bind to
CD47 and compositions comprising such antibodies, including pharmaceutical compositions,
diagnostic compositions and kits. Also provided are methods of using anti-CD74 antibodies for
therapeutic and diagnostic purposes, and methods for making such anti-CD47 antibodies, for
example with cell-free (CF) s.
2. BACKGROUND
CD47, also known as integrin—associated protein (IAP), ovarian cancer antigen 0A3,
Rh-related antigen and MER6, is a multi-spanning transmembrane or belonging to the
immunoglobulin amily. SIRPOL (signal-regulatory-protein or) expressed on macrophages
interacts with CD47, and this interaction negatively ls effector function of innate immune
cells such as host cell phagocytosis. CD47 expression and/or activity have been implicated in a
number of diseases and disorders. Accordingly, there exists a need for therapies that target
CD47, as well as better methods for making such therapies.
3. SUMMARY
In one aspect, provided herein are antibodies (e.g., monoclonal antibodies), including
antigen-binding nts thereof, which specifically bind to CD47 (e.g., human CD47), such as
an extracelluar domain (ECD) of CD47. In specific aspects, such anti—CD47 antibody blocks
CD47 binding to SIRPOL, promotes phagocytosis, has d or no Fc effector function (e.g.,
binding to FcyR, ADCC, or CDC) and/or has little or no ination (e.g., hemagglutination)
activity.
WO 09415
In a specific aspect, provided herein is a monoclonal anti-CD47 antibody which
specifically binds to human CD47, wherein the anti-CD47 antibody is a variant of a parental
antibody, and wherein the anti-CD47 dy when produced using a cell-free (CF) expression
system has a higher antibody expression titer or yield compared to the parental antibody when
produced in the CF expression system. In a particular aspect, anti-CD47 antibodies provided
herein which are expressed in a CF system, are sylated.
In one aspect, provided herein is a monoclonal anti-CD47 antibody which specifically
binds to human CD47 (e.g., SEQ ID NO: 38 or 39), wherein the anti-CD47 antibody, when
ed using a cell-free system, has a higher antibody expression titer or yield compared to a
parental antibody produced using the ree system. In specific aspects, the the anti-CD47
antibody expression titer or yield is higher by at least 1 fold, at least 2 fold, or at least 3 fold
compared to the parental dy. In c aspects, the the anti-CD47 antibody expression
titer or yield is higher by at least 25%, 50%, 75%, or 100% compared to the parental dy.
In particular aspects, such anti-CD47 antibody is a zed antibody. In specific aspects, the
cell-free system comprises using S30 cell—free t. In ular aspects, such cell-free
system comprises prokaryotic disulfide bond isomerase Dst. In certain aspects, such anti-
CD47 antibody is an IgG1 antibody. In certain aspects, such anti—CD47 antibody is an IgG4
antibody. In certain aspects, such anti-CD47 antibody is an IgG4 antibody comprising a S228P
amino acid substitution according to the EU numbering index. In certain aspects, such anti-
CD47 antibody is an IgG4 antibody comprising a S228P and L235E amino acid substitutions
according to the EU numbering index.
In specific s, such parental antibody of an anti-CD47 antibody provided herein
comprises a heavy chain variable region comprising the amino acid sequence of SEQ ID NO: 1.
In certain aspects, such parental dy comprises a light chain variable region comprising the
amino acid sequence of SEQ ID NO: 12. In particular aspects, such parental antibody comprises
a heavy chain comprising the amino acid sequence of SEQ ID NO: 2, 3 or 4.
In particular s, an anti-CD47 antibody provided herein comprises (i) a heavy
chain variable region comprising complementaiity determining region (CDR) l, 2, and 3 of
antibody 2A1, and (ii) a light chain variable region comprising CDRl, CDR2, and CDR3 of
antibody 2A1.
In specific aspects, an anti-CD47 antibody provided herein ses (i) a heavy
chain variable region sing complementarity determining region (CDR) 1, 2, and 3
sing amino acid sequences GFNIKDYYLH (SEQ ID NO: 14), WIDPDQGDTE (SEQ ID
NO: 15), and NAAYGSSSYPMDY (SEQ ID NO: 16), respectively, and (ii) a light chain
variable region comprising CDR1, CDR2, and CDR3 comprising amino acid sequences
KASQDIHRYLS (SEQ ID NO: 17), RANRLVS (SEQ ID NO: 18), and LQYDEFPYT (SEQ ID
NO: 19), respectively.
In particular aspects, provided herein are D47 antibody comprising one or more
amino acid modifications (e.g., amino acid substitutions) ve to a parental antibody. In
c aspects, such one or more amino acid substitutions is in the framework region of the
heavy chain variable region or light chain variable region. In specific aspects, such anti-CD47
antibody comprises 13 or 14 amino acid modifications (e.g., amino acid substitutions) in the
framework region of the heavy chain variable region. In particular aspects, such anti-CD47
dy comprises 1 to 15 amino acid modifications (e.g., amino acid substitutions) in the
framework region of the heavy chain variable region. In particular aspects, such amino acid
modifications are conservative amino acid substitutions.
In c aspects, provided herein is a monoclonal anti-CD47I dy which
specifically binds to CD47 (e. g., human CD47 such as SEQ ID NO: 38 or 39) and comprises a
heavy chain variable region (VH) comprising the amino acid sequence:
X1QXzQLVQSGAEVKKX3GX4SVKVSCKASGFNIKDYYLHWVRQAPGQX5LEWMGWIDP
DQGDTEYAQKX6QXgRVTXgTXgDXmSX11STAYIVIELXIZSLRSX13DTAX14YYCNAAYGSS
SYPMDYWGQGTTVTV (SEQ ID NO: 20), wherein the amino acid at position X1 is any amino
acid or there is no amino acid at position X1, and wherein the amino acid at each of positions X2-
X14 is any amino acid. In certain aspects, X1 is M or there is no amino acid at position X1, X2 is
an amino acid with hydrophobic side chains such as M or V, X3 is T or P, X4 is S or A, X5 is an
amino acid having aliphatic side chains such as A or G, X6 is F or L, X7 is D or G, X8 is an
amino acid with hydrophobic side chains such as I or M, X9 is R or T, X10 is R or T, X11 is M or
T, X12 is S or R, X13 is a negatively charged amino acid such as E or D, and X14 is an amino acid
with hydrophobic side chains such as M or V. In ular aspects, the VH of an anti-CD47
antibody provided herein comprises the amino acid sequence of SEQ ID NO: 21. In certain
aspects, the VH of an anti-CD47 antibody provided herein comprises the amino acid sequence of
SEQ ID NO: 22. In specific aspects, an anti-CD47 antibody provided herein comprises a heavy
chain comprising the amino acid sequence of SEQ ID NO: 5. In particular aspects, an anti—CD47
antibody provided herein comprises a heavy chain comprising the amino acid sequence of SEQ
ID NO: 6. In certain aspects, an anti-CD47 antibody provided herein comprises a heavy chain
comprising the amino acid sequence of SEQ ID NO: 7. In particular aspects, an anti-CD47
antibody provided herein comprises a heavy chain comprising the amino acid sequence of SEQ
ID NO: 8. In specific aspects, an anti-CD47 antibody provided herein comprises a heavy chain
comprising the amino acid sequence of SEQ ID NO: 9. In certain aspects, an anti-CD47
antibody provided herein ses a heavy chain sing the amino acid sequence of SEQ
ID NO: 10. In particular aspects, an anti-CD47 antibody provided herein comprises a heavy
chain comprising the amino acid sequence of SEQ ID NO: 11.
In specific aspects, an anti-CD47 antibody provided herein comprises a light chain
comprising the amino acid sequence of SEQ ID NO: 13 or SEQ ID NO: 13 without amino acid
M at the N—terminus.
In c aspects, provided herein is a monoclonal anti-CD47 antibody, which
cally binds to CD47 (e.g., human CD47 such as SEQ ID NO: 38 or 39), wherein the anti-
CD47 antibody does not cause or promote ntial red blood cell depletion, , or both
red blood cell depletion and anemia after administration. In certain s, such anti-CD47
antibody does not cause or promote substantial platelet depletion after administration. In
particular aspects, such anti-CD47 antibody does not cause or promote ntial agglutination
of cells after administration. In specific s, such anti-CD47 antibody does not cause or
promote substantial lutination of red blood cells after administration. In n aspects,
such D47 antibody inhibits (e.g., inhibits by at least about 10%, 20%, 30%, 40%, 50%,
60%, 70%, 80%, 90%, or 100%) CD47 from interacting with signal-regulatory-protein 0t
). In particular aspects, such anti-CD47 antibody promotes phagocytosis, such as
macrophage-mediated phagocytosis of a CD47-expressing cell. In certain aspects, such anti-
CD47 antibody provided herein does not cause or promote a significant level of effector function.
In certain aspects, an anti—CD47 dy provided herein, when expressed using a cell-free
system, exhibits lower (e. g., lower by at least about 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,
90%) binding affinity, or does not bind, to an FcyR ed to when expressed using CHO
cells. In particular aspects, such lower binding affinity is at least 1 log lower or at least 2 log
lower. In certain aspects, the FcyR is FcyRI, FcyRIIA R131, FcyRIIA H131, FcyRIIB, or
IA V158.
In particular aspects, an anti-CD47 dy provided herein is aglycosylated or has
less (e.g., at least about 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% less) ylation
when expressed using the cell free system compared to when expressed in CHO cells.
In specific aspects, provided herein is a monoclonal anti-CD47I antibody, which
specifically binds to CD47 (e.g., human CD47 such as SEQ ID NO: 38 or 39), wherein the anti-
CD47 antibody (i) promotes phagocytosis such as macrophage-mediated phagocytosis of a
CD47-expressing cell, (ii) does not cause or promote a significant level of hemagglutination of
red blood cells after stration; (iii) does not cause or promote a significant level of ADCC
or CDC; and/or (iv) exhibits lower (e.g,, lower by at least about 10%, 20%, 30%, 40%, 50%,
60%, 70%, 80%, 90%) g affinity, or does not bind, to an FcyR compared to when
expressed using CHO cells or compared to a parental antibody.
In certain aspects, an anti-CD47 antibody provided herein is a bispecific antibody. In
particular s, an anti—CD47 antibody provided herein is conjugated to an agent. In certain
aspects, the agent is a label or a toxin.
In particular aspects, provided herein is a pharmaceutical composition comprising an
effective amount of an anti-CD47 antibody provided herein or an antigen-binding fragment
thereof. In specific aspects, the pharmaceutifcal composition provided herein further comprising
a pharmaceutically acceptable carrier.
In specific aspects, provided herein is a polynucleotide comprising a nucleotide
ce encoding a VH chain region, a VL chain region, or both a VL chain region and a VH
chain region, of an anti—CD47 antibody described herein. In particular s, provided herein
is a polynucleotide comprising a nucleotide sequence ng a heavy chain, a light chain, or
both heavy chain and a light chain of an anti-CD47 dy described herein. In particular
aspects, such polynucleotide comprises a tide sequence of any one of SEQ ID NOs: 26-32
encoding a heavy chain. In specific aspects, such polynucleotide comprises a nucleotide
sequence of SEQ ID NO: 33 ng a light chain.
In particular aspects, provided herein is a population of polynucleotides comprising (i)
a first polynucleotide sing tide sequences encoding a VH or a heavy chain of an
anti-CD47 antibody described herein, and (ii) a second polypeptide comprising nucleotide
sequences encoding a VL or a light chain of an anti-CD47 antibody described herein. In certain
aspects, such first polynucleotide is operably linked to a first promoter, and such second
polynucleotide is operably linked to a second promoter.
In particular s, ed herein is a vector comprising one or more
polynucleotides described herein.
In specific aspects, provided herein is a population of vectors comprising (i) a first
vector comprising nucleotide sequences encoding a VH or a heavy chain of an anti-CD47
dy bed herien, and (ii) a second vector comprising nucleotide sequences encoding a
VL or a light chain of an anti-CD47 antibody described herein.
In ular aspects, provided herein is a composition for cell-free protein expression
comprising a cell-free extract and one or more polynucleotides or vectors described herein. In
specific aspects, the composition further comprising S30 cell-free extract. In ular s,
the composition provided herein further comprises prokaryotic disulfide bond isomerase Dst.
In specific aspects, provided herein is a method of ng cancer, wherein the
method comprises administering an D47 antibody described herein to a subject in need
thereof in an amount sufficient to treat the cancer in the subject.
In particular aspects, provided herein is a method of alleviating a symptom of a
cancer, the method comprising stering an anti-CD47 antibody described herein to a
subject in need thereof in an amount sufficient to alleviate one or more ms of the cancer
in the t.
In specific aspects, such method provided herein further comprises administering
radiation or chemotherapy.
In specific aspects, such method provided herein further comprises administering
r anti-cancer agent.
In specific aspects of the methods provided herein, the cancer is a hematological
cancer. In a particular aspect, the cancer is a solid cancer. In a certain aspect, the cancer is
multiple myeloma, non-Hodgkin’s lymphoma, acute myeloid leukemia (AML), breast cancer,
bladder cancer, non-small cell lung cancer/carcinoma, hepatocellular carcinoma (HCC), sarcoma,
or head and neck cancer.
In particular aspects, ed herein is an isolated cell comprising one or more
polynucleotides or s described herein.
In c s, provided herein is an isolated cell comprising a population of
polynucleotides or vectors described herein.
In specific aspects, provided herein is an isolated cell producing an D47
antibody or antigen-binding fragment described herein.
In particular aspects, provided herein is a population of host cells comprising (i) a
first host cell sing a polynucleotide comprising nucleotide sequences encoding a VH or a
heavy chain of an anti-CD47 antibody described herein, and (ii) a second host cell comprising a
polynucleotide comprising nucleotide sequences encoding a VL or a light chain of an anti-CD47
dy described herein.
In particular aspects, provided herein is a method of making an anti-CD47 antibody
comprising expressing an anti-CD47 antibody described herein with a composition for cell-free
protein expression described herein. In a certain aspect, such method further comprises
purifying the anti-CD47 antibody.
In specific aspects, ed herein is a method of making an D47 antibody
comprising expressing the anti-CD47 antibody with a cell bed herein. In a certain aspect,
such method further comprises purifying the anti-CD47 antibody.
4. BRIEF DESCRIPTION OF THE FIGURES
Figure 1A depicts the autoradiagram of anti-CD47 antibodies expressed with a cell-
free (CF) system. Samples l-lO correspond to CF-expressed anti-CD47 IgGl (l), IgGl-Sm (2),
IgGl-l3m (3), IgGl-l3mZ (4), IgG4P (5), IgG4P-5m (6), l3m (7), IgG4PE (8), IgG4PE-
5m (9), and IgG4PE-l3m (10) antibodies, respectively.
Figure 1B depicts a graph showing anti-CD47 dy titers (mg/L) obtained from
aCF expression . Samples 1-10 correspond to CF—expressed anti-CD47 IgGl (1), IgGl-
5m (2), IgGl-l3m (3), IgGl-l3mZ (4), IgG4P (5), IgG4P-5m (6), IgG4P-l3m (7), IgG4PE (8),
IgG4PE—5m (9), and IgG4PE-l3m (10) antibodies, respectively.
s 2A-2F depict dual sensorgrams from Biacore analysis of anti-CD47
IgG1-5m (2A), IgG1-13m (2B), IgG1-13mZ (2C), IgG4P-5m (2D), IgG4PE-5m (2E), and
l antibody (2F).
Figures 3A-3C depict graphs plotting specific heat capacity (kcal/mol/OC) versus
temperature (°C) from thermostability analysis using Differential Scanning metry (DSC)
for anti-CD47 IgGl-l3mZ (3A), IgGl-l3m (3B), and IgGl-Sm (3C) antibodies.
Figure 4 depicts a graph plotting anti—CD47 antibody plasma tration (pg/mL)
versus time (hours) from pharmacokinetic s with anti-CD47 IgG4-PE antibody produced
with CHO cells and anti-CD47 IgG1 and IgGl-Sm antibodies produced by the CF expression
system.
Figure 5 depicts a graph plotting tumor volume (mm3) versus days after RPMI8226
tumor cell ation from in vivo mouse tumor xenograft studies using anti-CD47 IgGl-Sm
antibodies produced by the CF expression system at doses of 1 mg/kg, 03 mg/kg, and 0.1 mg/kg
(qwx3).
. DETAILED DESCRIPTION
In one aspect, provided herein are antibodies (e.g., monoclonal antibodies), and
antigen-binding fragments thereof, that cally bind to CD47 (e.g., human CD47). In
c aspects, such anti-CD47 antibody blocks CD47 binding to , promotes
phagocytosis, has reduced or no Fc effector on (e.g., binding to FcyR, ADCC, or CDC)
and/or has little or no agglutination (e.g., hemagglutination) activity.
In a specific aspect, provided herein is a monoclonal anti-CD47 antibody which
specifically binds to human CD47, wherein the anti-CD47 antibody is a t of a parental
antibody, and wherein the anti-CD47 antibody when produced using a cell-free (CF) expression
system has a higher dy expression titer or yield compared to the parental antibody when
expressed in the CF system. In a particular , anti-CD47 antibodies provided herein which
are expressed in a CF , are aglycosylated.
As used herein, the terms “CD47” or “integrin-associated protein” or “IAP” or
“ovarian cancer antigen” or “0A3” or “Rh—related antigen” or “MER6” can be used
interchangeably and refer to a multi-spanning transmembrane receptor belonging to the
immunoglobulin superfamily. The amino acid sequence of an exemplary human CD47 is
provided below (GenBank Accession No. Q08722.l (G1: 1 171879), incorporated herein by
reference). The signal sequence (amino acids 1—18) is underlined.
l MWPLVAALLL SAQL LFNKTKSVEF TFCNDTWIP CFVTNMLAQN T'i'.LVYVKWKF
WO 09415
61 KGRDIYTTDG ALNKSTVPTD FSSAKIEVSQ LLKGDASLKM SHTG NYTCEVTELT
121 IELK YRVVSWFSPN ENIJIVIFPI FAILJFWGQF YRSG GMD?KTIA.L
181 VAGLVITVIV IVGAILFVPG EYSTKNATGT GTIVTSTGIL ILLHYYVFST AIGLTSFVIA
241 ILVIQVIAYI LAVVGLSLCI AACIPMHGP. LISG.SILAL AQ.LGLVYMK FVASNQKTIQ
301 PPRKAVEEPL NAFKESKGMM NDE (SEQ ID NO: 38)
For clarity, the amino acid sequence of an exemplary human CD47 excluding the signal
sequence is provided below.
1 QLJFNKTKSV EFTFCNDTVV IPCFVTNMEA.QNTTEVYVKW KFKGRDIY"F STVP
61 TDFSSAKIEV SQLLKGDASL KMDKSDAVSH TGNYTCEVTE LTREGETIIE LKYRVVSWFS
121 PNENILIVIF ?IFAIL4FWG QFGIKTLKYR SGGMD?KTIA L.VAGLVI"V IVIVGAIJFV
181 PGEYSLKNAT GLGLIVTSTG YYVF STAIGJTSFV IAILVIQVIA YILAVVGJSL
241 CIAACIPMHG ?LLISGJSIL ALAQLLGLVY MKFVASNQKT IQPPRKAVEE PLNAFKESKG
301 MMNDE (SEQ ID NO: 39)
The terms red blood cell(s) and erythrocyte(s) are synonymous and used
interchangeably herein.
The term agglutination refers to ar clumping, while the term hemagglutination
refers to clumping of a specific subset of cells, i.e., red blood cells. Thus, hemagglutination is a
type of agglutination.
.1 Antibodies
In a specific aspect, provided herein are antibodies which specifically bind to CD47
(e. g., human CD47). In particular aspects, ed herein are anti-CD47 antibodies comprising
modifications in one or more amino acid residues (e.g., 5—13 amino acid substitutions in the
framework region of the heavy chain variable region) that singly allow for better
production in a cell-free (CF) expression sytem than the parental antibody without the
modifications. In certain aspects, such D47 antibodies inhibit SIRPOL interaction with
CD47, are sylated, promote phagocytosis, either in vivo or in vitro or both, have anti—
tumor activity (e. g., without promoting agglutination, such as hemagglutination), and/or have
low or no Fc effector function (e.g., binding to an FcyR, ADCC, or CDC).
In certain embodiments, antibodies or antigen-binding nts bed herein can
comprise sequences that do not naturally exist within the antibody germline repertoire of an
animal or mammal (e.g., human) in viva.
As used herein and unless otherwise specified, the terms “about” or “approximately”
mean within plus or minus 10% of a given value or range. In instances where an integer is
required, the terms mean within plus or minus 10% of a given value or range, rounded either up
or down to the nearest integer,
[Xsusedluxenrthetenns“anfibody”and‘finnnunogkflnflhf’and‘Tg”areteHnsofafi
and can be used hangeably herein and refer to a molecule with an antigen binding site that
specifically binds an antigen.
Antibodies can include, for example, monoclonal antibodies, recombinantly produced
antibodies, monospecific antibodies, multispecific antibodies (including bispecific antibodies),
human antibodies, humanized antibodies, murine antibodies (e.g., mouse or rat antibodies),
chimeric antibodies, synthetic antibodies, and tetrameric antibodies comprising two heavy chain
and two light chain molecules. In specific embodiments, dies can include, but are not
lirriiteacl tr) £111 £111til)()(1§/ liggllt (:llélill 111(311()111<:r, £111 l)()(13/ l1<3£1\/§I ll 111()11()111<3r, £111 l)()(l§l liggllt
chain dimer, an antibody heavy chain dimer, an antibody light chain- antibody heavy chain pair,
odies, heteroconjugate antibodies, single domain antibodies, and monovalent dies.
In a specific embodiment, antibodies can include antigen-binding nts or epitope binding
fragments such as, but not limited to, single chain antibodies or single-chain Fvs (scFv) (e.g.,
including monospecific, bispecific, eta), camelized antibodies, affybodies, Fab fragments, F(ab’)
fragments, 2 fragments, and disulfide-linked Fvs (dev). In certain embodiments,
antibodies bed herein refer to polyclonal antibody populations.
Antibodies can be of any type (e.g, IgG, IgE, IgM, IgD, IgA or IgY), any class, (e.g.,
IgGl, Ing, IgGg, IgG4, IgA1 or IgAz), or any subclass (e.g., Inga or Igng) of immunoglobulin
molecule. In n embodiments, antibodies bed herein are IgG antibodies, or a class
(e.g., human IgG1, Ing, IgG3 or IgG4) or subclass thereof. In certain embodiments, antibodies
@mflmflmmmmegGflmmwmuaghmmnkGQmawawmmmfhmmMn
embodiments, IgG1 antibodies described herein comprise one or more amino acid substitutions
and/or deletions in the constant region. In n embodiments, antibodies described herein are
IgG4 antibodies (e.g., human IgG4) or a subclass thereof. In certain embodiments, IgG4
dies described herein comprise one or more amino acid substitutions and/or deletions in
the constant region.
As used herein, an “antigen” is a moiety or molecule that contains an epitope to
which an antibody can specifically bind. As such, an antigen is also specifically bound by an
antibody.
As used herein, an “epitope” is a term in the art and refers to a zed region of an
antigen to which an antibody can specifically bind. An epitope can be a linear epitope or a
conformational, non-linear, or discontinuous, epitope. In the case of a polypeptide antigen, for
example, an epitope can be contiguous amino acids of the polypeptide (a “linear” epitope) or an
epitope can se amino acids from two or more ntiguous regions of the polypeptide
(a “conformational,” “non-linear” or “discontinuous” epitope). It will be appreciated by one of
skill in the art that, in general, a linear epitope may or may not be dependent on secondary,
tertiary, or quaternary structure.
As used , the terms “immunospecifically binds,77 (4'1mmunospecifically
recognizes,7) (( specifically binds,” and “specifically recognizes” are analogous terms in the
context of antibodies and refer to molecules that bind to an n/epitope as such binding is
understood by one d in the art. For example, a molecule (e.g., an antibody) that specifically
binds to an antigen may bind to other peptides or polypeptides, generally with lower y as
determined by, e.g., immunoassays, surface plasmon resonance assays, for example, BiacoreTM,
KinExA platform (Sapidyne Instruments, Boise, ID), or other assays known in the art. In a
specific embodiment, molecules that specifically bind to an antigen bind to the antigen with a Ka
that is at least 2 logs, 2.5 logs, 3 logs, 4 logs or greater than the K21 when the molecules bind to
another antigen. In another specific embodiment, molecules that specifically bind to an antigen
do not cross react with other proteins. In another specific embodiment, molecules that
specifically bind to an antigen do not cross react with other non-CD47 proteins.
As used herein, the term “monoclonal antibody” is a well known term of art that
refers to an antibody obtained from a population of homogenous or substantially homogeneous
dies. The term “monoclonal” is not limited to any particular method for making the
antibody. Generally, a tion of monoclonal dies can be generated by cells, a
population of cells, or a cell line. In specific embodiments, a “monoclonal antibody,” as used
herein, is an antibody produced by a single cell or cell line wherein the antibody
specifically binds to a CD47 epitope as determined, e.g., by ELISA or other n-
binding or competitive binding assay known in the art or in the Examples provided herein. In
particular embodiments, a monoclonal antibody can be a ic antibody or a zed
antibody. In certain embodiments, a monoclonal antibody is a monovalent antibody or
multivalent (e.g., bivalent) antibody.
-1]-
umsq Asundhmdmthfimnflhmvmmnmamnmaddfiefimtoanmnmoaddflmfisnma
proteinogenic amino acid, or a ranslationally modified variant f. In particular, the
term refers to an amino acid that is not one of the 20 common amino acids or pyrrolysine or
selenocysteine, or post-translationally modified variants f.
As used herein, the term “polyclonal antibodies” refers to an antibody population that
includes a y of different antibodies that immunospeciflcally bind to the same and/or to
different epitopes within an antigen or antigens.
As used , the terms “variable region” or “variable domain” refer to a portion of
an antibody, generally, a portion of an antibody light or heavy chain, typically about the amino-
tmhnnalllOto120annnoaddsinamnanneheavychahiandabmntheannno4ennnml90to100
ammomMsmanmmmhgndmm.meMemgmmcmmmfieammbmmWMWdammmmg
mflmflRMMWMfimmemmEMIMMWfimmMmmmmfiam
mmFRsmmmfiflmwflnmfllmmmmHoCJHmmddhaflmrFRLCDRLFRlCDRzFR}
CDR3-FR4. t wishing to be bound by any particular mechanism or theory, it is believed
that the CDRs of the light and heavy chains are primarily responsible for the interaction of the
antibody with antigen and for the specificity of the antibody for an epitope. In a specific
embodiment, numbering of amino acid positions of antibodies described herein is according to
the EU Index, as in Kabat el al. (1991) Sequences of Proteins of Immunological Interest, Fifth
Edition, US. Department of Health and Human Services, NIH Publication No. 91-3242. In
certain embodiments, the variable region is a human variable region. In certain embodiments,
the le region ses murine (e.g, mouse or rat) CDRs and human framework regions
GRS.hpMWMMmmmmmmmflwvmmmH%MnmammmewgdmmmonmmMmm
primate) variable region. In certain ments, the variable region comprises murine (e.g.,
mouse or rat) CDRs and e (e.g., human or non-human primate) framework regions (FRs).
As a non-limiting example, a variable region described herein is obtained from ling two
or more nts of human sequences into a composite human sequence.
In certain aspects, the CDRs of an antibody can be determined according to (i) the
Kabat numbering system (Kabat el al. (1971) Ann. NYAcad. Sci. 190:382—391 and, Kabat el al.
(1991) Seguences of Proteins of Immunological Interest, Fifth Edition, US. Department of
Health and Human Services, NIH Publication No. 2); or (ii) the Chothia numbering
scheme, which will be referred to herein as the “Chothia CDRs” (see, e.g., Chothia and Lesk,
1987, J. Mol. Biol., 1-917, Al-Lazikani e: 511., 1997, J. Mol. Biol., 273:927-948, Chothia
el al., 1992, J, Mol. Biol, 227:799-817; Tramontano A ef al., 1990, J. Mol. Biol. 215(1):]75-82,
and US. Patent No. 7,709,226); or (iii) the GeneTics (IMGT) numbering system, for
example, as described in Lefranc, M.-P., 1999, The Immunologist, 7: 132-136 and Lefranc, M.-P.
el‘ al., 1999, Nucleic Acids Res, 27:209—212 (“IMGT CDRs”), or (iv) MacCallum el al., 1996, J.
Mol. Biol, 262:732-745. See also, e.g., Martin, A., “Protein Sequence and Structure Analysis of
Antibody Variable Domains,” in Antibody Engineering, Kontermann and Dubel, eds, Chapter 31,
pp. 422-439, Springer-Verlag, Berlin (2001).
With respect to the Kabat numbering system, CDRs within an antibody heavy chain
mdmflememeMymflmHMammomMpmMmm31m3iwmwomMmMymnmdmkom
or two additional amino acids, ing 35 red to in the Kabat numbering scheme as 35A
and 35B) (CDRl), amino acid positions 50 to 65 (CDR2), and amino acid ons 95 to 102
@MB)UmyMKmemmmgwmmCMkwfimmmmmwhgmmmmmwMMe
typically t at amino acid positions 24 to 34 (CDRl), amino acid positions 50 to 56 (CDR2),
and amino acid positions 89 to 97 . As is well known to those of skill in the art, using
the Kabat numbering system, the actual linear amino acid sequence of the antibody variable
domain can contain fewer or additional amino acids due to a shortening or lengthening of a FR
and/or CDR and, as such, an amino acid’s Kabat number is not necessarily the same as its linear
amino acid number.
Antibodies provided herein can be of any type (e.g., IgG, IgE, IgM, IgD, IgA or IgY),
any class, (e.g., IgGl, IgG2, IgG3, IgG4, IgA1 or IgAz), or any subclass (e.g., Inga or Ingb, or a
mmmmmmafloflmmmmgwmmnwbwk.mcmmmmmmmmMMJmMmmwdmmmw
herein are IgG antibodies (e.g., human IgG), or a class (e.g., human IgG1, Ing, IgG3 or IgG4) or
subclassthereof
In specific aspects, provided herein is an antibody comprising an antibody light chain
mmhwwmmmnaggwqmmwhgndmmamflwmydmm.“MhmwunwflwhgndmmJna
c ment, the light chain of an antibody described herein is a kappa (K) light chain.
In another specific embodiment, the light chain of an antibody described herein is a lambda (9»)
light chain. In r embodiment, light chain is a mixed sequence, e.g., the variable portion of
the light chain comprises kappa light chain sequences and the constant region of the light chain
comprises lambda light chain sequences, or vice versa. In certain embodiments, the light chain
of an antibody described herein is a human kappa light chain or a human lambda light chain.
Non-limiting examples of human constant region sequences have been described in the art, e.g.,
see US. Patent No. 5,693,780 and Kabat et a]. (1991) ces of Proteins of Immunological
Interest, Fifth Edition, US. Department of Health and Human Services, NIH Publication No. 91-
3242.
In a specific aspect, provided herein is an antibody, e.g. a monoclonal antibody,
which specifically binds to human CD47, wherein such an anti-CD47 antibody is a variant of a
parental anti-CD47 antibody, wherein the anti-CD47 antibody, when produced using a cell-free
(CF) expression system, has a higher antibody expression titer or yield ed to that of the
al anti-CD47 antibody when expressed in the CF system, and n the anti-CD47
antibody ses one or more amino acid modifications, for example, 1-15 amino acid
modifications, relative to the the parental anti-CD47 antibody. In a particular aspect, the one or
more amino acid modifications, for example, 1-15 amino acid modifications, are within the
heavy chain or VH (e.g., SEQ ID NO: 1). In a particular aspect, the one or more amino acid
modifications, for e, l-15 amino acid modifications, are within the framework region of a
VH (e.g., SEQ ID NO: 1). In a certain aspect, the anti-CD47 dy provided herein which is
a t of a parental anti-CD47 antibody comprising the CDRs (e.g., Kabat CDRs) of the
parental anti-CD47 antibody.
In a specific aspect, provided herein is an antibody, e.g. a monoclonal antibody,
which specifically binds to human CD47, wherein such an anti-CD47 antibody is a variant of a
parental anti-CD47 antibody, wherein the anti-CD47 dy, when ed using a cell-free
(CF) sion system, has a higher antibody expression titer or yield compared to that of the
al anti-CD47 antibody when expressed in the CF , and wherein the anti-CD47
antibody comprising one or more amino acid modifications, for example, 1-15 amino acid
modifications, relative to the the parental anti-CD47 antibody. In a particular aspect, the one or
more amino acid modifications, for example, 5 or 14 amino acid modifications, are within the
heavy chain or VH (e.g., SEQ ID NO: 1). In a particular aspect, the one or more amino acid
modifications, for example, 5, 10, 13 or 14 amino acid modifications, are within the framework
region of a VH (e.g., SEQ ID NO: 1). In a particular aspect, the one or more amino acid
modifications, for example, 5, 13 or 14 amino acid modifications are Within the framework
region of a VH (e.g., SEQ ID NO: 1). In a certain aspect, the anti-CD47 antibody provided
herein which is a variant of a parental anti-CD47 antibody comprising the CDRs (e.g., Kabat
CDRs) of the parental anti-CD47I antibody. In certain aspects, such anti-CD47 antibody is an
IgGl, IgG2, IgG3, or IgG4 isotype antibody. In certain aspects, such anti-CD47 antibody is an
IgGl e antibody. In n aspects, such D47I antibody is an IgGl Z allotype isotype
antibody. In certain aspects, such anti-CD47 dy is an IgG4, such as an IgG4P or IgG4PE,
isotype antibody.
In a specific aspect, provided herein is an antibody, e. g. a monoclonal antibody,
which specifically binds to human CD47, wherein such an D47 antibody is a variant of a
parental anti-CD47 antibody, wherein the D47 antibody, when produced using a cell-free
(CF) expression system, has a higher antibody sion titer or yield compared to that of the
parental anti-CD47 antibody when expressed in the CF system. In specific embodiments, the
parental anti-CD47 antibody is antibody AB6. 12 (see, e.g., US. Application Publication No. US
2014/0140989 A1, which is incorporated herein by reference in its entirety). The amino acid
sequences of the heavy chain variable region (VH) and light chain le region (VL) of
antibody AB6. 12 are provided below, wherein the Kabat CDRs are underlined. In a certain
aspect, the anti-CD47 antibody provided herein is a variant of parental antibody AB6. 12, and
comprises the CDRs (e.g, Kabat CDRs) of parental antibody AB6. 12, for e SEQ ID NOs:
14-19. In certain aspects, such anti-CD47 antibody is an IgGl, IgG2, IgG3, or IgG4 isotype
antibody. In certain aspects, such anti-CD47 antibody is an IgGl isotype antibody. In certain
aspects, such anti-CD47 antibody is an IgGl Z allotype isotype antibody. In certain s,
such anti-CD47 antibody is an IgG4, such as an IgG4P or IgG4PE, isotype antibody.
Anti-CD47 antibody AB6. 12 heavy chain variable region (VH) (Kabat CDRs 1-3
are underlined, SEQ ID NOs: :
QMQLVQSGAEVKKTGSSVKVSCKASGFNIKDYYLHWVRQABGQAL*ZWMGW TEYAQKF
QDRVT I S TAYMELS SLRSEDTAMYYCNAAYGS S SYPMDYWGQGTTVTV (SEQ I D NO:
Anti-CD47 dy AB6. 12 light chain variable region (VL) (Kabat CDRs 1-3 are
underlined, SEQ ID NOs: 17-19):
N: QMTQS PSAMSASVGDRVT I TCKAS Q) I HRYLSWFQQKPGKVPKI— L I YRANRLVS G
VPSRFSGSGSGTEFTLTISSLQPEDFATYYCLQYDEFPYTFGGGTKVEIK (SEQ ID NO:
In a specific embodiment, an anti-CD47 described herein comprises one or more
amino acid modifications (e.g,, 1—15 amino acid modifications), for e in the VH
framework region, of a parental antibody, e.g., a parental dy selected from D47
dies described in US. Application Publication No. US 2014/0140989 A1, which is hereby
incorporated by reference in its entirety, for example anti-CD47 dies described in Table 1
of US. Application Publication No. US 2014/0140989 A1 (e.g., anti-CD47 antibody 2A1,
AB2.03, AB2.04, AB2.05, , AB2.07, AB2.08, , AB2.13, AB3.09, AB6.12,
AB6.]3,AB6.14,AB6.17,AB10.13,AB10.14,AB11.05,AB12.05,AB15.05,AB16.05,
, AB22.05, 5, AB24.05, and AB25.05).
In a specific aspect, provided herein is an antibody, eg. a monoclonal antibody,
which specifically binds to human CD47, wherein such an anti-CD47 antibody is a variant of a
parental anti-CD47 antibody, wherein the anti-CD47 antibody, when produced using a cell-free
(CF) expression system, has a higher antibody expression titer or yield compared to that of the
parental D47 antibody when expressed in the CF system, and wherein the anti-CD47
antibody comprises a VH comprising the following N—terminal to C-terminal sequence:
XlQXgQLVQSGAEVKKXQGXQSVKVSCKASGFNIKDYYLHWVRQAPGQXéLEWMGWIDP
DQGDTEYAQKxéQxZRVTxgrngxysxusrAYMELxESLRstDTAxflYYCNAAYGSs
SYPMDYWGQGTTVTV (SEQ ID NO: 20), wherein the underlined amino acid residues for Xk
Xfl are ordered from N-terminus to C-terminus, wherein X1 is M or there is no amino acid at
position X1, X2 is an amino acid with hydrophobic side chains such as M or V, X3 is T or P, X4 is
S or A, X5 is an acid having aliphatic side chains such as A or G, X; is F or L, X7 is D or G, X8 is
an amino acid with hydrophobic side chains such as I or M, X9 is R or T, X10 is R or T, X11 is M
or T, X12 is S or R, X13 is a negatively charged amino acid such as E or D, and X14 is an amino
acid with hydrophobic side chains such as M or V.
In particular s, an anti-CD47 antibody described herein comprises a VH
sing the sequence of SEQ ID NO: 20, wherein the amino acid at position X1 is any amino
acid such as M, X2 is not M, X3 is not T, X4 is not S, X5 is not A, X6 is not F, X7 is not D, X8 is
not I, X9 is not R, X10 is not R, X11 is not M, X12 is not S, X13 is not E, and/or X14 is not M. In
particular aspects, any 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, or 14 of X1 to X14 are not these
amino acids. In particular aspects, the VH amino acid sequence is not the VH amino acid
sequence of antibody AB6. 12, for example, the VH amino acid sequence is not SEQ ID NO: 1.
In particular aspects, an D47 antibody described herein comprises a VH
comprising the sequence of SEQ ID NO: 20, wherein the amino acid at position X7 is not G, X9 is
not A and/or X11 is not S. In particular aspects, any 1, 2, or 3 of X7, X9 and X11 are not these
amino acids. In particular aspects, when the amino acid at position X7 is G, then X8 is M and/or
X10 is T, X9 is not A and/or X11 is not S.
In particular aspects, an anti-CD47 dy bed herein comprises a VH
sing the sequence of SEQ ID NO: 20, n the amino acid at position X7 is not G, X8 is
not M, X9 is not E, X10 is not T, and/or X11 is not T. In particular aspects, any 1, 2, 3, or 4 of X7
to X11 are not these amino acids. In particular aspects, when the amino acid at position X7 is G,
then X; is M, Xlois T, X9 is not E, and X11 is T.
In a particular aspect, an anti—CD47 antibody described herein comprises a VH
comprising the ce of SEQ ID NO: 20, n the VH does not comprise the amino acid
ce of SEQ ID NO: 5, 6, 7, 8, 9, 10, 12, 13,14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26,
27, 28, 29, or 30, of US. Application Publication No. US20l4/Ol40989 Al, which is
incorporated herein by reference in its entirety. In a particular aspect, an anti-CD47 antibody
described herein comprises a VH comprising the consensus sequence of SEQ ID NO: 20,
wherein the VH does not se the ork regions of the amino acid sequence of SEQ ID
NO: 5, 6, 7, 8, 9, 10, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23,24, 25,26, 27, 28, 29, or 30, of
US. Application Publication No. US2014/0140989 A1, which is incorporated herein by
reference in its entirety.
In particular aspects, X1 is M, X2 is V, X3 is P, X4 is A, X5 is G, X; is L, X7 is G, X8 is
M, X9 is T, X10 is T, X11 is T, X12 is R, X13 is D, and/or X14 is V. In particular embodiments, any
1,2, 3,4, 5, 6, 7, 8, 9, 10, ll, l2, 13, or 14 ole to X14 are these amino acids.
In particular aspects, X1 is M, X2 is M, X3 is P, X4 is S, X5 is A, X6 is F, X7 is G, X8 is
I, X9 is R, X10 is R, X11 is T, X12 is R, X13 is E, and/or X14 is V. In particular embodiments, any
1,2, 3,4, 5, 6, 7, 8, 9, 10, ll, 12, 13, or 14 ofX1 to X14 are these amino acids.
In a particular aspect, an anti—CD47 antibody provided herein is not antibody AB6. 12.
In a particular aspect, an anti-CD47 antibody provided herein does not comprise a VH (e.g., SEQ
ID NO: 1) and/or a VL (e.g., SEQ ID NO: 12) ofantibody AB6.l2.
In a specific aspect, an anti-CD47 antibody provided herein, comprises one of the
following VH amino acid sequences presented in Table 1.
Table 1: VH amino acid sequence
51;;ng VH amino acid sequence
Consensus LVQSGA_LVKKX3GX4SVKVSCKASG\I—F---"DKYYLHWVRQAPGQX5
LEWMGWIDPDQGDTEYAQKXGQX-yRVTXgTX9DX_1_oSX_1_1STAYMELX_1_ZS
QSX13DTAX14YYCNAAYGSSSYPMDYWGQGTTVTV
LDMDYWGQGTTVTV
MQMQLVQSGAEVKKPGSSVKVS C {AS GFN"_K WVRQA- _LWMG
WI DPDQGDTEYAQKLQGRVTMTT3TSTSTAYMELRS LRSDDTAVYYCNAA
YGS S SY9MDYWGQGTTVTV
In a specific aspect, provided herein is an antibody, e. g. a monoclonal antibody,
which specifically binds to human CD47, wherein such an anti-CD47 antibody is a variant of a
al anti-CD47 antibody, wherein the anti-CD47 antibody, when produced using a cell-free
(CF) expression system, has a higher antibody expression titer or yield compared to that of the
al anti-CD47 antibody when expressed in the CF system, and wherein the anti-CD47
dy comprises a VH comprising SEQ ID NO: 21. In certain aspects, such anti—CD47
antibody is an IgGl, IgG2, IgG3, or IgG4 isotype dy. In certain s, such anti-CD47
antibody is an IgGl isotype antibody. In n aspects, such anti-CD47 antibody is an IgGl Z
allotype isotype dy. In certain aspects, such anti-CD47 antibody is an IgG4, such as an
IgG4P or IgG4PE, isotype antibody.
In a specific aspect, provided herein is an antibody, e. g. a monoclonal dy,
which specifically binds to human CD47, wherein such an anti-CD47 antibody is a variant of a
parental anti-CD47 antibody, wherein the D47 antibody, when produced using a cell—free
(CF) expression system, has a higher antibody sion titer or yield compared to that of the
parental anti-CD47 antibody when expressed in the CF system, and wherein the D47I
antibody ses a VH comprising SEQ ID NO: 22. In certain aspects, such anti-CD47
antibody is an IgGl, IgG2, IgG3, or IgG4 isotype antibody. In certain aspects, such anti-CD47
antibody is an IgGl isotype dy. In certain aspects, such anti-CD47 antibody is an IgGl Z
allotype isotype antibody. In certain aspects, such anti-CD47 antibody is an IgG4, such as an
IgG4P or IgG4PE, isotype antibody.
In a particular aspect, an anti-CD47 antibody (IgGl—l3m) provided herein comprises
an IgGl heavy chain comprising the amino acid sequence as set forth below:
MQVQLVQSGAEVKKPGASVKVSCKASGFNIKDYYLHWVRQAPGQGLEWMGWIDPDQGDTEYAQK
LQGRVTMTTDTSTSTAYMELRSLQSDDTAVYYCNAAYGSSSYPMDYWGQGTTVTVSSASTKGPS
SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV
PSSSLGTQTY:CNVNHKPSNTKVDKKVEPKSCDKTflTCPPCBAPELLGGPSVELEPPKPKDTLM
ISRTPEVTCVVVDVSHEDPEVKFWWYVDGVEVHNA{TKPQflflQYNSTYRVVSVLTVLIQDWLNG
KEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL3PSRJELTKNQVSLTCLVKGFYPSDIAVE
BLNNYKTTPPVLDSDGSFFLYSKLTVDKSQWQQGWVFSCSVMHEALHNHYTQKSLSLS
PGK (SEQ ID NO: 5)
In a particular aspect, an anti-CD47 antibody (IgGl-l3mZ ) provided herein
comprises an IgGl-Z allotype heavy chain comprising the amino acid sequence as set forth
below:
MQVQLVQSGAEVKKPGASVKVSCKASGFNIKDYYLHWVRQAPGQGLEWMGWIDPDQGDTEYAQK
LQGRVTMTTDTSTSTAYMELRSLQSDDTAVYYCNAAYGSSSYPMDYWGQGTTVTVSSASTKGPS
VFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV
PSSSLGTQTY:CWVNHKPSNTKVDKKVEPKSCDKT{TCPPCBAPELLGGPSVELEPP{PKDTLM
ISRTPEVTCVVVDVSHEDPEVKFWWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG
KEYKCKVSNKALPAPIEKTISKA<GQPREPQVYTL3BSRELMTKNQVSLTCLVKGFYPSDIAVE
WLSNGQBLNNYKTTPPVLDSDGSFFLYSKLTVDKSQWQQGWVFSCSVMHEALHNHYTQKSLSLS
PGK (SEQ ID NO: 6)
In a particular aspect, an D47 antibody (IgGl-Sm) provided herein comprises
an IgGl heavy chain comprising the amino acid ce as set forth below:
MQMQLVQSGAEVKKPGSSVKVSCKASGFN:KDYYLHWVRQAPGQALfiWMGW DPDQGDTEYAQK
FQGRVT TR)RSTSTAYMELRSLRSEDTAVYYCNAAYGSSSYPMDYWGQGTTVTVSSASTKGPS
VFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV
TQTYICWVNHKPSWTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLM
ISRTPEVTCVVVDVSHEDPEVKFWWYVDGVEVHNAKTKP?flfiQYNSTYRVVSVLTVLHQDWLNG
KEYKCKVSNKAL?APIEKTISKAKGQPREPQVYTLPPSRDETTKNQVSLTCLVKGFYPSDIAVE
WLSNGQPLNNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGWVFSCSVMHEALHNHYTQKSLSLS
PGK (SEQ ID NO: 7)
In a particular aspect, an anti—CD47 antibody (IgG4P-l3m) provided herein
comprises an IgG4P antibody comprising the amino acid sequence as set forth below:
WO 09415
MQVQLVQSGAEVKKPGASVKVSCKASGFNIKDYYLHWVRQAPGQGLEWMGWIDPDQGDTEYAQK
LQGRVTMTTDTSTSTAYMELRSLQSDDTAVYYCNAAYGSSSYPMDYWGQGTTVTVSSASTKGPS
VFPLAPCSRSTS?STAALGCWVKDYTPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV
PSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGBPCPBCPAPEFLGGPSVFLEEBKPKDTLMISR
TPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPQEEQFNSTYQVVSVLTVUHQDWLNGK?Y
KCKVSNKGLBSSILKTISKAKGQPREPQVYTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWES
NGQPENNYKTTPPVLDSDGSFFLYSQLTVDKSRWQEGNVFSCSVM{EALHNHYTQKSLSLSLGK
(SEQ ID NO: 8)
In a particular aspect, an anti-CD47 antibody (IgG4P-5m) provided herein comprises
an IgG4P heavy chain comprising the amino acid sequence as set forth below:
MQMQLVQSGAEVKKPGSSVKVSCKASGFN:KDYYLHWVRQAPGQALfiWMGW DPDQGDTEYAQK
FQGRVTITRDRSTSTAYMELRSLRSZDTAVYYCNAAYGSSSYPMDYWGQGTTVTVSSASTKGPSJ.
VFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV
PSSSLGTKTYTCWVDHKPSNTKVDKRVESKYGPPCP?CPAPEFLGGPSVFLFPPKPKDTLMISR
TPEVTCVVVDVSQL‘LJDPEVQFNWYVDGVEVHNAKTKPREEQFNSTYRVVSVLTVLHQDWLNGKEY
KCKVSNKGLPSS"?KTTSKAKGQPQEPQVYTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWES
NYKTTPPVLDSDGSFFLYSRLTVDKSRWQEGNVFSCSVMHEALHNHYTQKSLSLSLGK
(SEQ ID NO: 9)
In a particular aspect, an anti—CD47 dy (IgG4PE—l3m) provided herein
comprises an IgG4PE heavy chain comprising the amino acid sequence as set forth below:
MQVQLVQSGAEVKKPGASVKVSCKASGFNIKDYYLHWVRQAPGQGLEWMGWIDPDQGDTEYAQK
LQGRVTMTTDTSTSTAYMELRSLRSDDTAVYYCNAAYGSSSYPMDYWGQGTTVTVSSASTKGPS
VFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV
TKTYTCNVDHKPSNTKVD{RVESKYGPPCPPCPAPjFEGGPSVELEBPKP{DTLMISR
TPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPREEQFVSTYRVVSVLTVLHQDWLNGKEY
KCKVSN<GLPSS fi<T SKAKGQPQEPQVYTLPPSQEEMTKWQVSLTCLVKGEYPSD AVHWfiS
NGQPENWYKTTPPVLDSDGSFFLYSRLTVDKSRWQEGNVFSCSVMHEALHNHYTQKSLSLSLGK
(SEQ ID NO: 10)
In a particular aspect, an anti—CD47 antibody (IgG4PE-5m) provided herein
comprises an IgG4PE heavy chain comprising the amino acid ce as set forth below:
MQMQLVQSGAEVKKPGSSVKVSCKASGFNIKDYYLHWVRQAPGQALflWMGW DPDQGDTEYAQK
FQGRVTITRDRSTSTAYMELRSLRSEDTAVYYCNAAYGSSSYPMDYWGQGTTVTVSSASTKGPS
VFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV
PSSSLGTKTYTCWVDHKPSNTKVD{RVES{YGBPCPBCPAPEFEGGPSVFLFBBKP{DTLMISR
TBjVTCVVVDVSQiDPEVQFNWYVDGVEV{NAKTKPREEQFNSTYQVVSVLTVWHQDWLNGK *J.Y
KCKVSNKGLBSS"rXTISKAKGQPREPQVYTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWES
NGQPENNYKTTPPVLDSDGSFFLYSRLTVDKSRWQEGNVFSCSVM{EALHNHYTQKSLSLSLGK
(SEQ ID NO: L1)
In a c aspect, provided herein is an antibody, e. g. a monoclonal dy,
which specifically binds to human CD47, wherein such an anti-CD47 dy is a variant of a
parental anti-CD47 antibody, n the anti-CD47 antibody, when produced using a cell-free
(CF) expression system, has a higher antibody expression titer or yield compared to that of the
parental anti-CD47 antibody when expressed in the CF system, and wherein the anti-CD47
antibody comprises a light chain comprising a kappa or lambda light chain constant region (e.g.,
human kappa or lambda light chain constant region), for e SEQ ID NO: 13.
In a specific aspect, provided herein is an antibody, e. g. a monoclonal dy,
which specifically binds to human CD47, wherein such an anti-CD47 antibody is a variant of a
parental anti-CD47 antibody, wherein the anti-CD47 antibody, when produced using a cell-free
(CF) expression system, has a higher antibody expression titer or yield compared to that of the
parental anti-CD47 dy when expressed in the CF system, and n the anti-CD47
antibody comprises (i) a VH bed herein (e.g., SEQ ID NO: 20, 21, or 22) or a heavy chain
described herein (e.g., any one of SEQ ID NOsz5-l l), and (ii) a light chain comprising a kappa
or lambda light chain constant region (e.g., human kappa or lambda light chain constant region),
for example SEQ ID NO: 13, e.g., as set forth below (anti-CD47 antibody light chain (IgK)), or
SEQ ID NO: 13 without the amino acid M at the N—terminus:
QSPSAMSASVGDRVTITCKASQDIHRYLSWFQQKPGKVPKHLIYRANRLVSGVPSRFS
fibTLT SSLQPEDFATYYCLQYDEFPYTFGGGTKVfi KRTVAAPSVFIFPPSDEQLKS
GTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSXDSTYSLSSTLTLSKADYEKHKV
YACEVTHQGLSSPVTKSFNRGFC (SfiQ 3 NO: L3)
In a specific embodiment, an anti-CD47 described herein is not an anti-CD47
antibody described in US. Application Publication No. US 2014/0140989 A1, which is hereby
incorporated by reference in its entirety, for example any one of anti-CD47 antibodies in Table 1
ofthe publication (e.g., anti-CD47 antibody 2A1, AB2.03, AB2,04, AB2.05, AB2.06, AB2.07,
-2]-
AB2.08, AB2.09, AB2.13, AB3.09, A3612, A3613, A3614, A3617, AB10.13, AB10.14,
AB11.05, AB12.05, AB15.05, AB16.05, AB17.05, AB22.05, 5, 5, and AB25.05),
or any antibody sing any of SEQ ID NOS: 5-30 of the publication.
In some embodiments, an anti-CD47 antibody provided herein or an antigen-binding
fragment thereof is an IgG isotype. In some embodiments, the constant region of the antibody is
of human IgG1 isotype, having an amino acid sequence:
ASTKGPSVFP LAPSSKSTSG GTAALGCLVK DYFPEPVTVS WNSGALTSGV
HTFPAVLQSS GLYSLSSVVT VPSSSLGTQT YICNVNHKPS NTKVDKKVEP
KSCDKTHTCP PCPAPE-GG PSVFLFPPKP SRTP EVTCVVVDVS
HED?EVKFNW VHNA.KTKPREEQYE STYRVVSVLT VLHQDWLWGK
EYKCKVSNKA LPAPIEKTIS KAKGQPREPQ VYTLPPSRDE SLTC
LVKGFYPSDI AVEWESNGQP ENNYKTT?PV LDSDGSFFLY SKLTVDKSRW
QQGNVFSCSV MHEALHNHYT QKSLSLSPGK (SEQ ID NO: 34)
In some embodiments, the human IgG1 constant region is modified at amino acid
Asn297 (Boxed, Kabat ing) to prevent to glycosylation of the antibody, for example
Asn297Ala (N297A). In some embodiments, the constant region of the antibody is modified at
amino acid Leu235 (Kabat Numbering) to alter Fc receptor interactions, for example Leu235Glu
(L23 5B) or Leu235Ala ). In some embodiments, the constant region of the antibody is
modified at amino acid Leu234 (Kabat Numbering) to alter Fc receptor interactions, e.g,
Leu234Ala (L234A). In some embodiments, the constant region of the antibody is altered at
both amino acid 234 and 235, for example Leu234Ala and Leu235Ala (L234A/L235A) (EU
index ofKabat er a] 1991 Sequences ofProteins nological st).
In some embodiments, the constant region of an anti-CD47 antibody provided
herein is of human IgG2 isotype, having an amino acid sequence:
ASTKGPSVFP LAPCSRST87J. STAALGCLVK DYFPEPVTVS WNSGALTSGV
LQSS GLYSLSSVVT VPSSNFGTQT YTCNVDHKPS NTKVDKTVER
KCCVECPPCP APPVAGPSV? KDTW M"SRTPFVTC VVVDVSHEDP
EVQFNWYVDG VEVHNAKTKB RELQ:ESTER VVSVLTVVHQ DWLNGKEYKC
KVSNKGLPAP IEKTISKTKG QP?E?QVYTL MTKN QVSLTCLVKG
EYPSDISVLW ESNGQBENNY KTTBBMLDSD GSFFLYSKLT VDKSRWQQGN
VFSCSVMHEA.LHNHYTQKSL SLSPGK (SEQ ID NO: 35)
In some embodiments, the human IgG2 constant region is modified at amino acid
Asn297 (Boxed, Kabat Numbering) to prevent to glycosylation of the antibody, e.g., Asn297A1a
(N297A).
In some ments, the constant region of an D47 antibody provided
herein is of human IgG3 isotype, having an amino acid sequence:
ASTKGPSVFP LAPCSRSTSG GTAALGCLVK DYFPEPVTVS TSGV
HTFPAVLQSS GLYSLSSVVT VPSSSLGTQT YTCNVNHKPS NTKVDKRVEL
KTPLGDTTHT CPRCPEBKSC JTBPBCBRCP TPBP CPRCPEBKSC
DTPPPCPRCP GPSV HLEBBKPKDT PM SRTPfiVT CVVVDVSHL‘LJ D
PEVQFKWYVD GVEVHNAKTK PREEQYESTF RVVSVLTVLH QDWLNGKEYK
CKVSNKALBA_P fiKTISKTK GQPREPQVYT LPPSREEMTK NQVSLTCLVK
GFYPSDIAVE WESSGQPENN YNTTPPMLDS DGSFFLYSKL TVDKSRWQQG
NIFSCSVMHE ALHNEFTQKS K (SEQ ID NO: 36)
In some embodiments, the human IgG3 constant region is modified at amino acid
Asn297 (Boxed, Kabat Numbering) to prevent to glycosylation of the antibody, e.g, Asn297A1a
(N297A). In some embodiments, the human IgG3 nt region is modified at amino acid 435
to extend the half—life, e.g., Arg43 5His (R43 5H) (EU index of Kabat et a! 1991 ces of
Proteins ofImmunological Interest).
In some embodiments, the constant region of an D47 antibody provided
herein is of human IgG4 isotype, having an amino acid sequence:
ASTKGPSVFP LAPCSRSTSF STAALGCLVK DYFPRPVTVS WNSGALTSGV
HTFPAVLQSS GLYSLSSVVT VPSSSLGTKT YTCNVDHKPS NTKVDKRVES
KYGPPCPECP APEFEGGPSV FLFPPKPKDT LMISRTPEVT CVVVDVSQED
PEVQFNWYVD GVEVHNAKTK PRfifiQEESTY RVVSVLTVLH QDWLNGKEYK
GLBS S fiKTTSKAK GQPQEPQVYT EMTK NQVSLTCLVK
GEYBSDIAV: WESNGQPENN YKTTPPVLDS JGSEFLYSRL TVDKSRWQEG
NVFSCSVMHE TQKS LSLSLGK (SEQ ID NO: 37)
In some embodiments, the human IgG4 constant region is modified within the
hinge region to prevent or reduce strand exchange, e.g., Ser228Pro ($228P). In other
embodiments, the human IgG4 constant region is modified at amino acid 235 to alter Fc receptor
interactions, e.g., Leu235G1u (L23 5E). In some embodiments, the human IgG4 constant region
2015/067642
is modified within the hinge and at amino acid 235, e.g., Ser228Pro and Leu235Glu
(S228P/L23 5B). In some embodiments, the human IgG4 constant region is modified at amino
acid Asn297 (Kabat Numbering) to prevent to glycosylation of the dy, e.g., Asn297Ala
(N297A). In some embodiments of the invention, the human IgG4 constant region is modified at
amino acid positions Ser228, Leu235, and Asn297 (e.g., S228P/L23 5E/N297A). (EU index of
Kabat et a] 1991 Sequences ofProteins ofImmunological Interest). In other embodiments of the
invention, the dy is of human IgG4 subclass and lacks glycosylation. In these
embodiments the glycosylation can be eliminated by mutation at position 297 (Kabat numbering),
for example N297A. In other embodiments, the glycosylation can be eliminated by production
of the antibody in a host cell that lacks the ability for post-translational ylation, for
example a bacterial or yeast derived system or a modified mammalian cell expression .
In some embodiments, the human IgG constant region is modified to alter
antibody-dependent cellular cytotoxicity (ADCC) and/or complement-dependent cytotoxicity
(CDC), e.g., the amino acid modifications described in Natsume et al., 2008 Cancer Res, 68(10):
3863-72; Idusogie et al., 2001 J Immunol, 166(4): 2571-5; Moore et al., 2010 mAbs, 2(2): 181-
189, Lazar et al., 2006 PNAS, 103(11): 4005—4010, Shields et al., 2001 JBC, 276(9): 6591—
6604; hagen et al., 2007 Cancer Res, 67(18): 8882—8890; Stavenhagen et al., 2008 Advan.
Enzyme Regul., 48: 152-164, Alegre et al, 1992 J Immunol, 148: 3461-3468, Reviewed in
Kaneko and Niwa, 2011 gs, 25(1): 1-11.
In some embodiments, the human IgG constant region is modified to induce
heterodimerization. For e, having an amino acid modification within the CH3 domain at
Thr3 66, which when ed with a more bulky amino acid, e.g., Try (T3 66W), is able to
preferentially pair with a second CH3 domain having amino acid modifications to less bulky
amino acids at positions Thr3 66, Leu3 68, and Tyr407, e.g., Ser, Ala and Val, respectively
(T3 66S/L3 68A/Y407V). Heterodimerization via CH3 modifications can be further stabilized by
the introduction of a disulfide bond, for example by ng Ser354 to Cys (S3 54C) and Y349
to Cys (Y3 49C) on opposite CH3 domains (Reviewed in , 2001 Journal of Immunological
Methods, 248: 7—15).
In other aspects, the antibody lacks glycosylation, but is not modified at amino acid
Asn297 (Kabat numbering). In these embodiments the glycosylation can, for example, be
eliminated by production of the antibody in a host cell that lacks a post-translational
glycosylation capacity, for e a bacterial or yeast derived system or a modified mammalian
cell expression system. In certain aspects, such a system can be a CF expression system.
] In certain embodiments, an anti-CD47 antibody described herein or an antigen-
binding fragment thereof comprises amino acid ces with certain percent identity relative
to a al antibody.
The determination of percent identity between two sequences (e.g., amino acid
sequences or nucleic acid sequences) can be accomplished using a atical algorithm. A
miting example of a mathematical algorithm utilized for the comparison of two sequences
is the algorithm of Karlin and Altschul, 1990, Proc. Natl. Acad. Sci. USA. 4 2268,
modified as in Karlin and Altschul, 1993, Proc. Natl. Acad. Sci. USA. 9025873 5877. Such an
algorithm is incorporated into the NBLAST and XBLAST programs of Altschul ez‘ al., 1990, J.
Mol. Biol. 215:403. BLAST nucleotide searches can be performed with the NBLAST nucleotide
program parameters set, e.g., for score=100, wordlength=12 to obtain nucleotide sequences
homologous to a nucleic acid molecules described herein. BLAST protein searches can be
performed with the XBLAST program parameters set, e.g, to score 50, wordlength=3 to obtain
amino acid sequences homologous to a protein molecule described herein. To obtain gapped
alignments for comparison purposes, Gapped BLAST can be utilized as described in Altschul et
al., 1997, Nucleic Acids Res. 2523389 3402. Alternatively, PSI BLAST can be used to perform
an iterated search which detects distant relationships between les (Id) When utilizing
BLAST, Gapped BLAST, and PSI Blast programs, the default parameters of the respective
programs (e.g, of XBLAST and NBLAST) can be used (see, e.g, National Center for
Biotechnology Information (NCBI) on the worldwide web, ncbi.nlm.nih.gov). Another preferred,
non limiting example of a atical algorithm utilized for the comparison of sequences is the
algorithm of Myers and Miller, 1988, CABIOS 4:11 17, Such an algorithm is incorporated in the
ALIGN program (version 2.0) which is part of the GCG sequence alignment software package.
When utilizing the ALIGN program for comparing amino acid ces, a PAM120 weight
residue table, a gap length y of 12, and a gap penalty of 4 can be used.
The percent identity between two sequences can be determined using techniques
r to those described above, with or without allowing gaps. In ating percent identity,
typically only exact s are counted.
In certain embodiments, an antibody described herein or an antigen-binding fragment
thereof ses a VL domain having at least 80%, at least 85%, at least 90%, at least 95%, at
least 98%, or at least 99% sequence identity to the amino acid sequence of SEQ ID NO: 12,
wherein the antibody cally binds to CD47. In certain embodiments, an antibody described
herein or an antigen-binding fragment thereof comprises a VL domain having at least 80%, at
least 85%, at least 90%, at least 95%, at least 98%, or at least 99% sequence identity to the
amino acid sequence of SEQ ID NO: 12, wherein the dy specifically binds to CD47, and
wherein the antibody comprises CDRs (e.g., VL CDRs 1—3) that are identical to the CDRs (e.g.,
VL CDRs 1—3) of SEQ ID NO: 12 (e.g., SEQ ID NO: 17—19).
In certain embodiments, an antibody described herein or an antigen-binding nt
thereof comprises a light chain having at least 80%, at least 85%, at least 90%, at least 95%, at
least 98%, or at least 99% sequence identity to the amino acid sequence of SEQ ID NO: 13,
wherein the dy specifically binds to CD47. In certain embodiments, an antibody described
herein or an antigen-binding fragment thereof ses a light domain having at least 80%, at
least 85%, at least 90%, at least 95%, at least 98%, or at least 99% sequence identity to the
amino acid sequence of SEQ ID NO: 13, wherein the antibody specifically binds to CD47, and
wherein the antibody ses CDRs (e.g., VL CDRs l—3) that are identical to the CDRs (e.g.,
VL CDRs 1—3) of SEQ ID NO: 13 (e.g., SEQ ID NO: 17—19).
In certain embodiments, an antibody described herein or an antigen-binding fragment
thereof comprises a VH domain having at least 80%, at least 85%, at least 90%, at least 95%, at
least 98%, or at least 99% sequence identity to the amino acid sequence of SEQ ID NO: 1,
wherein the antibody specifically binds to CD47 and wherein the anti-CD47 antibody, when
produced using a cell-free sion system, has a higher antibody expression titer or yield
compared to the parental antibody when produced in the CF expression system. In certain
embodiments, an antibody described herein or an antigen-binding fragment thereof ses a
VH domain having at least 80%, at least 85%, at least 90%, at least 95%, at least 98%, or at least
99% sequence identity to the amino acid sequence of SEQ ID NO: 1, wherein the dy
specifically binds to CD47, and wherein the antibody ses CDRs (e.g., VL CDRs 1-3) that
are identical to the CDRs (e.g., VL CDRs 1-3) of SEQ ID NO: 1 (e.g., SEQ ID NO: 14-16).
In certain embodiments, an antibody described herein or an antigen-binding fragment
thereof comprises a light chain having at least 80%, at least 85%, at least 90%, at least 95%, at
least 98%, or at least 99% sequence identity to the amino acid sequence of SEQ ID NO: 2,
wherein the antibody specifically binds to CD47 and wherein the anti-CD47 antibody, when
produced using a ree expression system, has a higher antibody sion titer or yield
cmmmwKHMpmmmMmmwyWMnmmmwdmflwCFammfimwwwm.human
embodiments, an antibody described herein or an antigen-binding nt thereof comprises a
heavy domain having at least 80%, at least 85%, at least 90%, at least 95%, at least 98%, or at
least 99% sequence identity to the amino acid sequence of SEQ ID NO: 2, wherein the antibody
specifically binds to CD47, and wherein the antibody ses CDRs (e.g., VL CDRs 1-3) that
are cal to the CDRs (e.g., VL CDRs 1-3) of SEQ ID NO: 2 (e.g., SEQ ID NO: 17-19).
In certain embodiments, an antibody described herein or an antigen-binding fragment
thereof comprises a light chain having at least 80%, at least 85%, at least 90%, at least 95%, at
least 98%, or at least 99% sequence identity to the amino acid sequence of SEQ ID NO: 3,
wherein the antibody specifically binds to CD47 and wherein the anti-CD47 antibody, when
produced using a cell-free expression system, has a higher antibody expression titer or yield
compared to the parental antibody when produced in the CF expression system. In certain
embodiments, an antibody described herein or an antigen-binding fragment thereof comprises a
heavy domain having at least 80%, at least 85%, at least 90%, at least 95%, at least 98%, or at
least 99% sequence identity to the amino acid sequence of SEQ ID NO: 3, wherein the antibody
specifically binds to CD47, and n the antibody comprises CDRs (e.g., VL CDRs 1-3) that
are identical to the CDRs (e.g., VL CDRs 1-3) of SEQ ID NO: 3 (e.g., SEQ ID NO: 17-19).
In certain embodiments, an antibody bed herein or an antigen-binding fragment
thereof comprises a light chain having at least 80%, at least 85%, at least 90%, at least 95%, at
least 98%, or at least 99% sequence ty to the amino acid sequence of SEQ ID NO: 4,
wherein the antibody specifically binds to CD47 and wherein the anti-CD47 antibody, when
ed using a cell-free sion system, has a higher antibody sion titer or yield
compared to the parental antibody when produced in the CF expression system. In certain
embodiments, an antibody bed herein or an antigen-binding fragment thereof comprises a
heavy(knnafiihaxdngeuleast8096,atleast8596,atleast9096,atleast9596,atleast9896,orat
least 99% sequence identity to the amino acid sequence of SEQ ID NO: 4, wherein the antibody
specifically binds to CD47, and wherein the antibody comprises CDRs (e.g., VL CDRs 1-3) that
are identical to the CDRs (e.g., VL CDRs 1-3) of SEQ ID NO: 4 (e.g., SEQ ID NO: 17-19).
In certain aspects, anti-CD47 antibodies provided herein exhibit one or more
desirable characteristics, such as, by way of non—limiting example, blocking of the interaction
between CD47 and its ligand SIRPOL and/or promoting (e.g., inducing or increasing)
ytosis, t promoting (e. g., inducing or increasing) hemagglutination of erythrocytes,
as well as anti-tumor activity. For e, anti-CD47 antibodies provided herein block at least
40%, at least 45%, at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least
75%, at least 80%, at least 85%, at least 95%, or at least 99% of the interaction between CD47
and SIRPOL as compared to the level of interaction between CD47 and SIRPOL in the absence of
the anti—CD47 antibody described herein.
In c s, anti-CD47 antibodies described herein promote (e..g, induce or
increase) phagocytosis of cells, e. g., CD47-expressing cells (e.g., CCRF-CEM cells), for
example, by macrophages. In one aspect, the level of phagocytosois in the presence of anti-
CD47 antibodies described herein is increased by at least 5%, at least 10%, at least 20%, at least
%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least
99%, at least 150%, at least 200%, compared to the level of aphagocytosis in the presence of
anti-CD47 antibodies described herein.
In specific aspects, anti—CD47 antibodies described herein do not promote (e..g,
induce or increase), or cause a significant level of, agglutination of cells, e.g., D47
antibodies described herein do not promote (e.. g, induce or increase), or cause a significant level
of, hemagglutination of red blood cells. In one aspect, the level of agglutination in the presence
of anti-CD47 dies described herein is d by at least 5%, at least 10%, at least 20%, at
least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at
least 99% ed to the level of agglutination in the ce of anti-CD47 antibodies known
to induce agglutination, such as MCA911 mouse anti-human CD47 antibody (BRIC126). In
some aspects, anti-CD47 dies described herein do not promote (e.g., induce or increase), or
cause a significant level of, agglutination if the level of agglutination in the presence of anti-
CD47 antibodies described herein is reduced by at least 5%, at least 10%, at least 20%, at least
%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least
99% compared to the level of agglutination in the presence of existing anti-CD47 antibodies
known to induce agglutination, such as MCA911 mouse anti-human CD47 antibody (BRIC126).
Anti-CD47 antibodies described herien also include monoclonal antibodies that
specifically bind CD47, wherein the antibody does not promote (e.g., induce or increase), or
cause a cant level of, ination, e. g., red blood cell hemagglutination (“RBC
hemagglutination”).
In some aspects, the level of RBC depletion is determined by measuring the RBC
count in a subject after administration of a ent, e. g., an anti-CD47 antibody described
herein. In some embodiments, anti-CD47 antibodies described herein do not promote (e. g.,
induce or increase), or cause a significant level of, RBC depletion if the RBC count in a subject
after administration of an anti-CD47 antibody described herein is within the range of a normal,
healthy subject. For example, the RBC count for a normal, healthy male human is about 4.7 to
about 6.1 million cells per microliter of blood . For example, the RBC count for a ,
healthy female human is 4.2 to about 5.4 million cells per microliter of blood sample. In some
aspects, anti-CD47 antibodies described herein do not promote (e.g., induce or increase), or
cause a significant level of, RBC depletion if the RBC count in a subject after administration
(e.g., 5 min, 10 min, 30 min, 1 h, 2 h, 3 h, 4 h, 5 h, 12 h, 24 h, 2 days, 4 days, 6 days, 1 week, 2
weeks, 3 weeks, 1 month, 2 months, or more) of an D47 antibody described herein is at
least 50%, 60%, 70%, 80%, 90%, 95%, 97%, 98%, 99%, or 99.5% of the RBC count prior to
administration. In specific aspects,anti-CD47 antibodies described herein do not promote (e. g.,
induce or increase), or cause a significant level of, RBC ion if the RBC count in a subject
after stration (5 min, 10 min, 30 min, 1 h, 2 h, 3 h, 4 h, 5 h, 12 h, 24 h, 2 days, 4 days, 6
days, 1 week, 2 weeks, 3 weeks, 1 month, 2 months, or more) of an anti47 antibody described
herein is at least 50%, 60%, 70%, 80%, 90%, 95%, 97%, 98%, 99%, or 99.5% of the RBC count
in a subject after administration of a placebo treatment (e.g., vehicle). RBC counts are
determined by rd methods in the art.
In specific aspects, anti-CD47 antibodies described herein do not promote (e.g.,
induce or increase), or cause a cant level of, platelet depletion. For example,
stration of an D47 antibody described herein leads to a percentage of platelets
remaining of at least 30%, 40%, 50%, 60%, 70%, 80%, 90%, or 100%,
Also, anti-CD47 antibodies described herien include but are not limited to antibodies
that do not bind to, or have a low binding affinity to, a Fcy receptor (FcyR). For example, the
constant region of an anti-CD47 antibody, e. g., when produced using a CF expression system,
has a lower binding affinity to a FcyR than the constant region of an anti-CD47 dy, e.g.,
when produced using a host cell (e. g., CHO cells) expression system.
Those skilled in the art will recognize that it is possible to quantitate, without undue
experimentation, the level of agglutination, e.g., the level of hemagglutination of RBCs. For
example, those skilled in the art will recognize that the level of hemagglutination is ascertained
by measuring the area of an RBC dot after performing a hemagglutination assay in the presence
of anti-CD47 dies described, as described in the Examples below. In some cases, the area
of the RBC dot in the presence of anti-CD47 antibody described heIien is compared to the area
of the RBC dot in the e of an anti—CD47 antibody, e. g., in the presence of zero
hemagglutination. In this manner, hemagglutination is quantified relative to a baseline l.
A larger RBC dot area corresponds to a higher level of hemagglutination. Alternatively,
ometry of the RBC dot may also be utilized to quantitate lutination.
] Those skilled in the art will recognize that it is possible to quantitate, without undue
mentation, the level of RBC depletion. For example, those skilled in the art will ize
that the level ofRBC depletion is ascertained, e.g., by measuring the RBC count (i.e., the total
number of RBCs in a sample of blood), e. g., by using a cell counter or a hemacytometer. Those
of skill in the art will recognize that the RBCs in a sample of blood can optionally be isolated by
fractionating whole blood using, e.g., centrifugation, prior to counting. In some cases, the RBC
count in the presence of an anti-CD47 antibody described herein is compared to the RBC count
in the absence of the CD47 antibody, e.g., in the presence of zero RBC ion. In this manner,
the level of RBC depletion is normalized relative to a baseline l.
In specific aspects, anti-CD47 antibodies provided herein exhibit inhibitory activity,
for example by inhibiting CD47 sion (e.g., inhibiting cell surface expression of CD47),
activity, and/or signaling, or by interfering with the interaction between CD47 and SIRPoc. In
certain aspects, anti-CD47 antibodies provided herein completely or partially reduce or otherwise
modulate CD47 expression or activity upon binding to, or otherwise interacting with, CD47, e.g,,
a human CD47. The reduction or modulation of a biological function of CD47 is te,
significant, or partial upon interaction between the antibodies and the human CD47 polypeptide
and/or e. Anti-CD47 antibodies bed hereinare considered to completely inhibit
CD47 expression or activity when the level of CD47 expression or activity in the presence of the
antibody is decreased by at least 95%, e.g., by 96%, 97%, 98%, 99% or 100% as compared to the
level of CD47 sion or activity in the e of interaction, e.g., g, with the
antibody described herein. In a particular aspect, D47 antibodies are considered to
significantly inhibit CD47 expression or activity when the level of CD47 expression or activity
in the presence of the CD47 dy is decreased by at least 50%, e. g., 55%, 60%, 75%, 80%,
85% or 90% as compared to the level of CD47 expression or activity in the absence of binding
with a CD47 antibody described herein. In certain aspects, anti-CD47 antibodies are considered
to partially inhibit CD47 expression or activity when the level of CD47 expression or activity in
the presence of the antibody is decreased by less than 95%, e. g., 10%, 20%, 25%, 30%, 40%,
50%, 60%, 75%, 80%, 85% or 90% as compared to the level of CD47 expression or activity in
the absence of interaction, e.g., binding, with an antibody described herein.
In ular aspects, anti-CD47 antibodies provided herein comprise one or more
non-natural amino acid residues at site—specific positions. See, e.g., US. Application Publication
No. US 2014/0046030 A1, which is orated herein by reference in its entirety. In specific
aspects, non-natural amino acid residues at site c positions has advantages for antibody
tion yield, solubility, binding affinity, and/or activity. Non—limiting examples of non-
natural amino acids have been described, see, e.g., US. Application Publication No. US
2014/0066598 A1.
In a particular aspect, provided herein are anti-CD47 antibodies conjugated to a
conjugation moiety or an agent such as a label or toxin. A conjugation moiety can be any
conjugation moiety deemed useful to one of skill in the art. For instance, a conjugation moiety
can be a polymer, such as polyethylene , that can improve the stability of the dy in
vitro or in vivo. A conjugation moiety can have therapeutic activity, thereby yielding an
antibody-drug conjugate. A conjugation moiety can be a lar payload that is harmful to
target cells. A conjugation moiety can be a label useful for detection or diagnosis. In certain
aspects, a conjugation moiety is linked to the antibody via a direct nt bond. In certain
aspects, a ation moiety is linked to the antibody via a linker. In particular aspects, a
conjugation moiety or a linker is attached via one of the non-natural amino acids of an anti-CD47
antibody. Exemplary conjugation moieties and linkers have been described, e.g., see US.
Application Publication No. US2014/0046030 Al, which is orated herein by reference in
its entirety.
.2 Antibody Production
dies or an n-binding nts bed herein that immunospecifically
bind to CD47 (e.g., ECD of human CD47) can be ed by any method known in the art, for
example, by al synthesis or by recombinant expression techniques (e.g, CF expression
systems).
Such methods can employ conventional techniques in molecular biology,
microbiology, genetic analysis, recombinant DNA, organic chemistry, biochemistry, PCR,
oligonucleotide synthesis and modification, nucleic acid ization, and related fields within
the skill of the art. These techniques are described, for example, in the references cited herein
and are fully explained in the literature. See, e.g.,, Maniatis el al. (1982) Molecular Cloning: A
Laboratog Manual, Cold Spring Harbor Laboratory Press, Sambrook et a]. , Molecular
Cloning: A Laboratog Manual, Second Edition, Cold Spring Harbor Laboratory Press,
Sambrook et a]. (2001) Molecular Cloning: A Laboratog; Manual, Cold Spring Harbor
Laboratory Press, Cold Spring Harbor, NY, Ausubel el al., Current Protocols in Molecular
My, John Wiley & Sons (1987 and annual updates); Current Protocols in Immunology, John
Wiley & Sons (1987 and annual updates) Gait (ed) (1984) Oligonucleotide Synthesis: A
Practical Approach, IRL Press; Eckstein (ed.) (1991) Oligonucleotides and Analogues: A
Practical Approach, IRL Press, Birren et al. (eds) (1999) Genome Analysis: A Laboratogy
Manual, Cold Spring Harbor Laboratory Press.‘
] In specific aspects, anti-CD47I antibodies as provided herein can be produced using a
CF expression system, for example, a CF expression system as known in the art, and, for
example, as described in the Examples below. For example, CF sion systems can include
cell-free extracts, such as S30 cell-free extracts, with Dst, and 20 amino acids (e.g., natural or
non-natural), and ally, one or more of iodoacetamide, magnesium glutamate, ammonium
glutamate, mM potassium glutamate, sodium pyruvate, AMP, GMP, UMP, and CMP, sodium
oxalate, putrescine, spermidine, potassium phosphate, T7 RNAP, and oxidized (GSSG)
glutathione. Heavy chain ds and light chain plasmids are added accordingly to the CF
extract composition for polypeptide tion and purification.
In some aspects, the CF expression system is an in vitro transcription and translation
system as described in Yin et al., mAbs, 2012, 4:217-225, incorporated by reference in its
-3 2-
entirety. In some aspects, the cell-free system utilizes a ree extract from a eukaryoctic cell
or from a prokaryotic cell. In some aspects, the prokaryotic cell is E. coli.
In particular embodiments, the CF expression system can utilize a system as
described in US Application Publication No. US 2014/0315245, which is hereby incorporated by
reference in its ty. For example, the CF sion system can comprise a bacterial extract
having an ive phosphorylation system and components necessary for cell free protein
synthesis and, in certain embodiments, can further comprise an exogenous protein chaperone,
e.g., a protein disulfide isomerase (PDI), or a peptide-prolyl cis-trans isomerase. In specific
embodiments, the PDI is a member of the Dsb (disulfide bond formation) family of E. coli, for
example, DsbA or Dst. In certain embodiments, the CF expression system comprises a cell
extract of E. coli strain SBDG028, 1, or SBDG044, as described in US Application
Publication No. US 2014/0315245, which can, for example, be prepared according to Zawada et
al., Biotechnology and Bioengineering (2011) vol. 108, No. 7.
In particular s, anti-CD47 antibodies provided herein comprise amino acid
ations that allow for antibody production using CF expression systems better than the
parental antibodies. In a particular aspect, anti-CD47 antibodies provided herein which are
produced using CF expression systems are sylated.
Monoclonal dies can, for example, be prepared using a wide variety of
techniques known in the art including the use of hybridoma, recombinant, and phage display
logies, or a ation thereof. For example, monoclonal antibodies can be produced
using hybridoma techniques including those known in the art and taught, for example, in Harlow
el al., Antibodies: A Laboratog Manual, (Cold Spring Harbor Laboratory Press, 2nd ed. 1988),
Hammerling et al., in: Monoclonal Antibodies and T-Cell Hybridomas 563 681 (Elsevier, NY,
1981), The term “monoclonal antibody” as used herein is not limited to antibodies produced
through hybridoma technology. For example, monoclonal antibodies can be produced
recombinantly from host cells engineered to express an antibody bed herein (e.g., anti-
CD47 antibody comprising the CDRs of any one of antibodies Ab235-Ab255) or a fragment
thereof, for example, a light chain and/or heavy chain of such an antibody.
r, the antibodies described herein or antigen-binding fragments thereof can also
be generated using various phage display methods known in the art. In phage display methods,
functional antibody domains are displayed on the surface of phage particles which carry the
polynucleotide sequences encoding them. Examples of phage display methods that can be used
to make the antibodies described herein include those disclosed in an el al., 1995, J.
l. Methods 182:41-50, Ames et 61]., 1995, J. Immunol. Methods 184:177-186,
Kettleborough et al., 1994, Eur. J. l. 24:952-958; Persic et al., 1997, Gene 187:9-18,
Burton ez‘ 61]., 1994, Advances in Immunology 57: 191-280, PCT Application No. PCT/GB91/Ol
134; International Publication Nos. WO 09, WO 91/10737, WO 92/01047, WO 92/18619,
WO 93/1 1236, WO 95/15982, WO 95/20401, and 3844; and US. Patent Nos.
,698,426, 5,223,409, 5,403,484, 5,580,717, 5,427,908, 5,750,753, 047, 5,571,698,
,427,908, 5,516,637, 5,780,225, 5,658,727, 5,733,743 and 5,969,108.
Antibodies bed herein can, for example, include chimeric dies. A
chimeric antibody is a molecule in which different ns of the antibody are derived from
different immunoglobulin molecules. For example, a chimeric antibody can contain a variable
region of a mouse or rat monoclonal antibody fused to a constant region of a human antibody.
Methods for producing chimeric antibodies are known in the art. See, e.g, Morrison, 1985,
Science 229: 1202; Oi e1al., 1986, BioTechniques 4:214; Gillies er al., 1989, J. Immunol.
Methods 125191—202, and US. Patent Nos. 5,807,715, 4,816,567, 4,816,397, and 6,331,415.
Antibodies or antigen-binding nts ed using techniques such as those
described herein can be isolated using standard, well known techniques. For example, antibodies
or antigen-binding fragments can be suitably separated from, e.g., culture medium, ascites fluid,
serum, cell lysate, synthesis reaction material or the like by conventional immunoglobulin
purification procedures such as, for example, protein A-Sepharose,_hydroxylapatite
chromatography, gel electrophoresis, dialysis, or affinity chromatography. As used herein, an
ted” or “purified” antibody is substantially free of cellular material or other proteins from
the cell or tissue source from which the antibody is derived, or ntially free of chemical
precursors or other chemicals when chemically synthesized, or from the components of the CF
expression system used to produce the dies.
Antibodies bed herein include antibody fragments which ize specific
CD47 antigens and can be generated by any technique known to those of skill in the art. For
example, Fab and F(ab’)2 fragments described herein can be produced by proteolytic cleavage of
immunoglobulin molecules, using enzymes such as papain (to produce Fab fragments) or pepsin
(to produce F(ab’)2 nts). A Fab fragment corresponds to one of the two identical arms of
an antibody le and contains the complete light chain paired with the VH and CH1
domains of the heavy chain. A F(ab’)2 fragment contains the two antigen—binding arms of an
antibody molecule linked by disulfide bonds in the hinge region. Alternatively, antibody
fragments bed herein can routinely be ed via well known recombinant expression
techniques. See, e.g., PCT publication No. WO 92/22324, MullinaX el al., 1992, BioTechniques
12(6):864-869; Sawai er al., 1995, AJRI34126-34; and Better et al, 1988, e 240: 1041-
1043.
Antibodies described herein can, for example, include humanized antibodies, e.g.,
deimmunized or composite human antibodies. A humanized antibody can comprise human
constant region sequences. In certain embodiments, a humanized antibody can be selected from
any class of immunoglobulins, including IgM, IgG, IgD, IgA and IgE, and any isotype, including
IgGl, Ing, IgG3 and IgG4. In certain embodiments, a humanized antibody can comprise kappa
or lambda light chain constant sequences.
Humanized antibodies can be produced using a variety of ques known in the art,
including but not limited to, CDR—grafting (European Patent No. EP 23 9,400, International
publication No. wo 91/09967; and US. Patent Nos. 5,225,539, 5,530,101, and 5,585,089),
veneenng or resurfacing (European Patent Nos. EP 592,106 and EP 519,596, Padlan, 1991,
Molecular Immunology 28(4/5):489-498, Studnicka el al., 1994, Protein Engineering 7(6):805-
814; and Roguska et al., 1994, PNAS 91:969-973), chain shuffling (US. Patent No. 332),
and techniques disclosed in, e.g., US. Pat. No. 6,407,213, US. Pat. No. 5,766,886, WO 9317105
Tan et 61]., J. Immunol. 169: 1 1 19 25 (2002), Caldas et 61]., Protein Eng. 13(5):353-60 (2000),
Morea er al., Methods 20(3):267 79 (2000), Baca el al., J. Biol. Chem. 272(16): 10678-84 (1997),
Roguska el‘ al., Protein Eng. 9(10):895 904 , Couto el‘ al., Cancer Res. 55 (23
Supp):5973 s- 5977s (1995), Couto el al., Cancer Res. 55(8): 1717—22 , Sandhu JS, Gene
150(2):409-10 (1994), and Pedersen et 61]., J. Mol. Biol. 235(3):959-73 (1994). See also US.
Patent Pub. No. US 2005/0042664 A1 (Feb. 24, 2005), each of which is incorporated by
reference herein in its entirety.
Antibodies described herein can, for example, be peciflc, e.g., iflc,
antibodies. Methods for making peciflc (e. g, bispeciflc antibodies) have been described,
see, for example, US. Patent Nos. 7951917, 6, 8227577, 5837242, 0, 5869620,
6132992, and 8586713.
Single domain antibodies, for example, dies lacking the light chains, can be
ed by methods well-known in the art. See Riechmann et al., 1999, J. l. 23 1 125-3 8;
Nuttall el al., 2000, Curr. Pharm. Biotechnol. l(3):253-263, Muylderman, 2001, J. Biotechnol.
74(4):277302; US. Patent No. 6,005,079; and International Publication Nos. WO 94/04678,
WO 94/25591, and WO 01/44301.
Human antibodies can be produced using any method known in the art. For example,
well known transgenic mice which are ble of expressing functional endogenous murine
immunoglobulins, but which can express human globulin genes, can be used.
Alternatively, for example, phage display techniques, described above, can be ed.
Moreover, in some embodiments, human antibodies can, for example, be produced using mouse—
human hybridomas. For example, human peripheral blood lymphocytes transformed with
Epstein-Barr virus (EBV) can be fused with mouse myeloma cells to produce mouse—human
hybridomas secreting human monoclonal dies, and these mouse—human hybridomas can
be screened to determine ones which secrete human monoclonal antibodies that
immunospeciflcally bind to a target antigen (e.g., ECD of human CD47). Such methods are
known and are bed in the art, see, e.g., Shinmoto et al., Cytotechnology, 2004, 46: 19-23,
Naganawa et al., Human dies, 2005, 1427—3 1.
] Antibody variable domains with the desired binding specificities (antibody-antigen
combining sites) can be fused to immunoglobulin constant domain sequences. The fusion
preferably is with an immunoglobulin heavy-chain constant domain, comprising at least part of
the hinge, CH2, and CH3 regions. It is preferred to have the first heavy-chain constant region
(CH1) containing the site ary for light-chain binding present in at least one of the fusions.
DNAs encoding the immunoglobulin chain fusions and, if desired, the immunoglobulin
light chain, are inserted into separate expression vectors, and are co-transfected into a suitable
host organism. For further details of generating bispeciflc antibodies see, for example, Suresh et
al., Methods in Enzymology, 121 :210 (1986).
According to another approach bed in WO 96/27011, the interface between a
pair of antibody molecules can be engineered to maximize the percentage of heterodimers which
are recovered from recombinant cell culture. The preferred interface comprises at least a part of
the CH3 region of an antibody constant domain. In this method, one or more small amino acid
side chains from the interface of the first dy molecule are replaced with larger side chains
-3 6-
(e.g. tyrosine or tryptophan). Compensatory “cavities” of cal or similar size to the large
side chain(s) are created on the interface of the second antibody molecule by replacing large
amino acid side chains with smaller ones (e.g. alanine or threonine). This es a mechanism
for increasing the yield of the heterodimer over other unwanted end-products such as
homodimers.
Bispeciflc antibodies can be prepared as full length antibodies or dy fragments
(e.g. 2 bispeciflc antibodies). Techniques for generating bispecif1c antibodies from
antibody fragments have been described in the literature. For example, ific antibodies can
be prepared using chemical linkage. Brennan et al., Science 229:81 (1985) describe a procedure
wherein intact antibodies are proteolytically cleaved to generate F(ab’)2 fragments. These
fragments are reduced in the presence of the dithiol complexing agent sodium arsenite to
stabilize vicinal dithiols and t intermolecular disulfide formation. The Fab’ fragments
generated are then converted to thionitrobenzoate (TNB) derivatives. One of the Fab’-TNB
tives is then reconverted to the Fab’-thiol by ion with mercaptoethylamine and is
mixed with an equimolar amount of the other Fab’-TNB derivative to form the bispeciflc
antibody. The ific antibodies produced can be used as agents for the selective
immobilization of enzymes.
.2.1 Polynucleotides, Cells and Vectors
In certain aspects, provided herein are polynucleotides comprising a nucleotide
ce encoding an antibody described herein or a fragment f (e.g., a variable light
chain region and/or le heavy chain region) that immunospeciflcally binds to a CD47
antigen, and vectors, e.g., vectors comprising such polynucleotides for recombinant expression in
host cells (e.g., E. coli and mammalian cells). In certain aspects, provided herein are cells (e.g.,
host cells). Also provided herein are methods of making the antibodies and antigen-binding
fragments described herein.
In certain aspects, provided herein are polynucleotides compiising a nucleotide
sequence encoding the light chain or heavy chain of an antibody described . In certain
embodiments, provided herein are polynucleotides comprising a nucleotide sequence encoding
the light chain and heavy chain of an antibody described herein. The cleotides can
comprise nucleotide sequences encoding a light chain comprising the VL FRs and CDRs of
dies described herein. The polynucleotides can comprise nucleotide sequences encoding a
heavy chain comprising the VH FRs and CDRs of antibodies bed herein. In specific
embodiments, a polynucleotide described herein encodes a VL chain region of SEQ ID NO: 13
or SEQ ID NO: 13 t amino acid M at the N—terminus. In specific embodiments, a
polynucleotide described herein encodes a VH chain region of any one of SEQ ID NOs: 5-11
-22. In specific embodiments, a polynucleotide described herein encodes a light chain
comprising the amino acid sequence of SEQ ID NO: 13. In specific embodiments, a
polynucleotide bed herein encodes a heavy chain comprising the amino acid ce of
any one of SEQ ID NOs: 5-11.
In specific embodiments, a polynucleotide described herein comprises a nucleotide
sequence provided in Table 2 encoding a light chain or a heavy chain of an anti-CD47 antibody
provided here.
Table 2: Anti-CD47 antibody VH and VL nucleotide sequences
Nucleotide sequences
D47 IgGl- 13m HC:
ATGCAAGTCCAATTGGTCCAGAGCGGTGCGGAAGTCAAGAAACCGGGTGCAAG
CGTCAAAGTTTCGTGCAAGGCGAGCGGTTTCAATATCAAAGACTATTATCTGCA
TCGTCAGGCTCCGGGCCAAGGCCTGGAGTGGATGGGTTGGATCGATCC
GGACCAGGGCGACACGGAGTACGCTCAGAAGCTGCAGGGTCGTGTTACCATGA
CCACCGACACCAGCACGAGCACCGCGTACATGGAACTGCGCTCTCTGCGTTCGG
ATGATACCGCGGTGTACTATTGCAACGCCGCGTACGGTAGCAGCAGCTATCCGA
TGGATTATTGGGGTCAAGGCACTACGGTGACTGTCAGCAGCGCCAGCACCAAG
GGCCCGTCCGTGTTTCCGCTGGCGCCAAGCTCCAAGAGCACCAGCGGTGGCACG
GCCGCACTGGGTTGTCTGGTAAAAGATTACTTTCCTGAGCCGGTGACCGTGAGC
TGGAATTCAGGTGCACTGACGTCCGGCGTTCACACGTTCCCGGCAGTTCTGCAG
AGCTCCGGTTTGTACAGCCTGTCTAGCGTCGTGACGGTGCCGAGCAGCAGCCTG
GGTACCCAAACCTACATTTGCAACGTTAACCATAAGCCGAGCAATACCAAAGTT
GACAAGAAAGTCGAACCTAAGAGCTGTGATAAGACGCATACCTGTCCGCCGTG
CCCGGCACCGGAACTGTTGGGCGGTCCGAGCGTGTTCCTGTTTCCGCCGAAGCC
GAAAGATACCCTGATGATTAGCCGCACCCCTGAGGTGACGTGCGTGGTTGTGGA
CGTTAGCCATGAGGATCCAGAGGTCAAATTCAATTGGTATGTCGATGGTGTTGA
GGTTCACAATGCCAAGACCAAACCGCGTGAAGAACAGTACAATAGCACCTACC
TGAGCGTGCTGACGGTCCTGCACCAGGACTGGCTGAACGGCAAAGAG
TACAAGTGTAAGGTCAGCAACAAGGCGCTGCCAGCACCGATTGAAAAGACCAT
TTCTAAAGCGAAAGGTCAGCCGCGTGAGCCGCAAGTCTATACCCTGCCGCCGTC
GCGCGATGAGCTGACTAAAAACCAGGTTAGCCTGACGTGCCTGGTGAAAGGTTT
CTACCCGAGCGACATCGCGGTGGAGTGGGAGAGCAACGGTCAACCGGAGAATA
ACTACAAAACCACCCCACCGGTCTTGGACTCCGATGGCAGCTTCTTTCTGTACTC
TAAACTGACCGTTGACAAAAGCCGTTGGCAACAGGGCAACGTCTTTAGCTGCAG
CGTGATGCATGAGGCTCTGCACAACCACTACACCCAAAAATCCCTGAGCCTGAG
CCCGGGTAAGTAA
Anti-CD47 3mZ HC:
ATGCAAGTCCAATTGGTCCAGAGCGGTGCGGAAGTCAAGAAACCGGGTGCAAG
CGTCAAAGTTTCGTGCAAGGCGAGCGGTTTCAATATCAAAGACTATTATCTGCA
CTGGGTTCGTCAGGCTCCGGGCCAAGGCCTGGAGTGGATGGGTTGGATCGATCC
GGACCAGGGCGACACGGAGTACGCTCAGAAGCTGCAGGGTCGTGTTACCATGA
CCACCGACACCAGCACGAGCACCGCGTACATGGAACTGCGCTCTCTGCGTTCGG
ATGATACCGCGGTGTACTATTGCAACGCCGCGTACGGTAGCAGCAGCTATCCGA
TGGATTATTGGGGTCAAGGCACTACGGTGACTGTCAGCAGCGCCAGCACCAAG
TCCGTGTTTCCGCTGGCGCCAAGCTCCAAGAGCACCAGCGGTGGCACG
GCCGCACTGGGTTGTCTGGTAAAAGATTACTTTCCTGAGCCGGTGACCGTGAGC
TGGAATTCAGGTGCACTGACGTCCGGCGTTCACACGTTCCCGGCAGTTCTGCAG
GGTTTGTACAGCCTGTCTAGCGTCGTGACGGTGCCGAGCAGCAGCCTG
GGTACCCAAACCTACATTTGCAACGTTAACCATAAGCCGAGCAATACCAAGGTT
GACAAAAAAGTTGAACCGAAATCTTGTGATAAAACTCATACCTGTCCGCCGTGC
CCGGCGCCTGAGCTGTTGGGTGGTCCGTCGGTCTTTCTGTTCCCGCCGAAGCCG
AAAGACACCCTGATGATTAGCCGCACCCCGGAAGTTACGTGCGTCGTCGTGGAT
GTCAGCCACGAGGACCCGGAGGTTAAGTTCAATTGGTATGTCGATGGCGTGGA
GGTTCACAACGCGAAAACCAAGCCGCGTGAGGAACAATACAATAGCACGTATC
TGAGCGTGCTGACCGTGCTGCACCAAGATTGGCTGAATGGTAAAGAA
TACAAGTGCAAAGTGAGCAACAAGGCATTGCCGGCACCGATCGAAAAGACGAT
CAGCAAAGCGAAAGGCCAACCGCGTGAACCGCAGGTCTATACCCTGCCGCCGA
GCCGTGAAGAAATGACGAAAAACCAAGTTAGCCTGACCTGTCTGGTGAAGGGC
TWTTACCCGAGCGACATCGCCGTCGAGTGGGAGTCTAACGGCCAGCCGGAAAA
CAATTACAAAACCACGCCGCCAGTCCTGGACAGCGACGGTAGCTTCTTTCTGTA
TAGCAAGCTGACCGTCGATAAAAGCCGTTGGCAGCAGGGTAATGTGTTCAGCTG
CAGCGTTATGCATGAGGCGCTGCACAATCACTATACCCAGAAATCCTTGTCCCT
GTCCCCGGGTAAGTAA
Anti-CD47 IgGl-Sm HC:
ATGCAAATGCAATTGGTACAAAGCGGTGCGGAAGTAAAGAAACCGGGTTCGTC
GGTAAAGGTTAGCTGTAAAGCTTCTGGCTTCAATATCAAGGATTACTATCTGCA
CTGGGTGCGTCAGGCGCCAGGTCAGGCCTTGGAATGGATGGGCTGGATTGACCC
GGATCAAGGTGACACCGAATATGCCCAAAAGTTTCAGGGTCGTGTGACCATCAC
CCGTGACCGTAGCACCTCCACCGCATATATGGAGCTGCGTAGCCTGCGCAGCGA
AGATACTGCGGTGTATTACTGCAATGCGGCCTATGGTAGCAGCTCCTATCCGAT
GGATTACTGGGGCCAGGGTACCACGGTGACGGTTAGCAGCGCAAGCACCAAGG
GCCCGAGCGTTTTCCCTCTGGCGCCGAGCAGCAAAAGCACTAGCGGCGGTACG
GCAGCCCTGGGTTGTCTGGTTAAAGATTACTTTCCGGAACCGGTTACCGTGTCCT
GGAACTCTGGCGCGCTGACCAGCGGTGTTCACACGTTTCCGGCGGTTCTGCAGA
GCAGCGGTCTGTATTCTTTGAGCTCCGTCGTCACCGTCCCGTCTAGCTCGCTGGG
CACGCAGACGTACATCTGCAATGTTAACCATAAGCCGAGCAATACCAAAGTTG
ACAAGAAAGTCGAACCTAAGAGCTGTGATAAGACGCATACCTGTCCGCCGTGC
CCGGAACTGTTGGGCGGTCCGAGCGTGTTCCTGTTTCCGCCGAAGCCG
AAAGATACCCTGATGATTAGCCGCACCCCTGAGGTGACGTGCGTGGTTGTGGAC
GTTAGCCATGAGGATCCAGAGGTCAAATTCAATTGGTATGTCGATGGTGTFEAG
GTTCACAATGCCAAGACCAAACCGCGTGAAGAACAGTACAATAGCACCTACCG
CGTGGTGAGCGTGCTGACGGTCCTGCACCAGGACTGGCTGAACGGCAAAGAGT
ACAAGTGTAAGGTCAGCAACAAGGCGCTGCCAGCACCGATTGAAAAGACCATT
TCTAAAGCGAAAGGTCAGCCGCGTGAGCCGCAAGTCTATACCCTGCCGCCGTCG
CGCGATGAGCTGACTAAAAACCAGGTTAGCCTGACGTGCCTGGTGAAAGGTTTC
TACCCGAGCGACATCGCGGTGGAGTGGGAGAGCAACGGTCAACCGGAGAATAA
CTACAAAACCACCCCACCGGTCTTGGACTCCGATGGCAGCTTCTTTCTGTACTCT
AAACTGACCGTTGACAAAAGCCGTTGGCAACAGGGCAACGTCTTTAGCTGCAG
GCATGAGGCTCTGCACAACCACTACACCCAAAAATCCCTGAGCCTGAG
CCCGGGTAAGTAA
Anti-CD47 IgG4-13m HC:
GTCCAATTGGTCCAGAGCGGTGCGGAAGTCAAGAAACCGGGTGCAAG
CGTCAAAGTTTCGTGCAAGGCGAGCGGTTTCAATATCAAAGACTATTATCTGCA
CTGGGTTCGTCAGGCTCCGGGCCAAGGCCTGGAGTGGATGGGTTGGATCGATCC
GGACCAGGGCGACACGGAGTACGCTCAGAAGCTGCAGGGTCGTGTTACCATGA
CCACCGACACCAGCACGAGCACCGCGTACATGGAACTGCGCTCTCTGCGTTCGG
ATGATACCGCGGTGTACTATTGCAACGCCGCGTACGGTAGCAGCAGCTATCCGA
TGGATTATTGGGGTCAAGGCACTACGGTGACTGTCAGCAGCGCCAGCACCAAG
GGCCCGTCTGTGTTTCCGTTGGCACCGTGCAGCCGTAGCACTAGCGAATCCACT
GCAGCGCTGGGTTGCCTGGTTAAGGACTATTTCCCGGAGCCGGTTACCGTGTCC
TGGAACTCTGGCGCCCTGACCAGCGGTGTTCACACGTTTCCAGCCGTCCTGCAG
AGCAGCGGTCTGTACAGCCTGAGCTCGGTGGTGACCGTTCCGAGCAGCTCTCTG
GGTACCAAAACCTATACCTGTAATGTCGATCACAAACCGTCTAACACGAAGGTC
GATAAACGTGTTGAAAGCAAGTACGGTCCGCCTTGTCCGCCGTGCCCGGCACCG
GAGTTTCTGGGCGGTCCGTCCGTATTCCTGTTCCCGCCGAAACCGAAAGATACC
TTGATGATTAGCCGTACGCCAGAGGTCACGTGCGTCGTGGTGGACGTTAGCCAA
GAGGATCCGGAAGTCCAATTCAACTGGTACGTGGACGGTGTCGAGGTGCACAA
TGCCAAAACCAAGCCGCGTGAAGAACAGTTTAACAGCACTTACCGCGTCGTTAG
GACCGTGCTGCACCAAGATTGGCTGAATGGTAAAGAGTACAAGTGCA
AGGTTAGCAATAAGGGTCTGCCGAGCAGCATCGAGAAAACCATTAGCAAGGCG
AAAGGTCAACCGCGCGAGCCACAGGTCTACACGCTGCCGCCGAGCCAAGAAGA
AATGACCAAAAATCAGGTTAGCCTGACTTGTCTGGTGAAAGGCTTCTACCCGAG
CGATATTGCAGTTGAATGGGAGAGCAACGGCCAGCCTGAGAACAACTATAAGA
CGACCCCGCCAGTGCTGGACAGCGATGGCAGCTTCTTTTTGTATTCTCGTCTGAC
CGTGGACAAGTCCCGTTGGCAAGAGGGCAATGTGTTCAGCTGTTCTGTCATGCA
CGAAGCGCTGCATAACCATTACACCCAGAAGTCCCTGAGCCTGTCGCTGGGCAA
ATAA
Anti-CD47 IgG4P-5m HC:
ATGCAATTGGTACAAAGCGGTGCGGAAGTAAAGAAACCGGGTTCGTC
GGTAAAGGTTAGCTGTAAAGCTTCTGGCTTCAATATCAAGGATTACTATCTGCA
CTGGGTGCGTCAGGCGCCAGGTCAGGCCTTGGAATGGATGGGCTGGATTGACCC
GGATCAAGGTGACACCGAATATGCCCAAAAGTTTCAGGGTCGTGTGACCATCAC
CCGTGACCGTAGCACCTCCACCGCATATATGGAGCTGCGTAGCCTGCGCAGCGA
AGATACTGCGGTGTATTACTGCAATGCGGCCTATGGTAGCAGCTCCTATCCGAT
GGATTACTGGGGCCAGGGTACCACGGTGACGGTTAGCAGCGCAAGCACCAAGG
CTGTGTTTCCGTTGGCACCGTGCAGCCGTAGCACTAGCGAATCCACTG
CAGCGCTGGGTTGCCTGGTTAAGGACTATTTCCCGGAGCCGGTTACCGTGTCCT
GGAACTCTGGCGCCCTGACCAGCGGTGTTCACACGTTTCCAGCCGTCCTGCAGA
GCAGCGGTCTGTACAGCCTGAGCTCGGTGGTGACCGTTCCGAGCAGCTCTCTGG
GTACCAAAACCTATACCTGTAATGTCGATCACAAACCGTCTAACACGAAGGTCG
ATAAACGTGTTGAAAGCAAGTACGGTCCGCCTTGTCCGCCGTGCCCGGCACCGG
AGTTTCTGGGCGGTCCGTCCGTATTCCTGTTCCCGCCGAAACCGAAAGATACCT
TGATGATTAGCCGTACGCCAGAGGTCACGTGCGTCGTGGTGGACGTTAGCCAAG
AGGATCCGGAAGTCCAATTCAACTGGTACGTGGACGGTGTCGAGGTGCACAAT
GCCAAAACCAAGCCGCGTGAAGAACAGTTTAACAGCACTTACCGCGTCGTTAG
CGTCCTGACCGTGCTGCACCAAGATTGGCTGAATGGTAAAGAGTACAAGTGCA
AGGTTAGCAATAAGGGTCTGCCGAGCAGCATCGAGAAAACCATTAGCAAGGCG
AAAGGTCAACCGCGCGAGCCACAGGTCTACACGCTGCCGCCGAGCCAAGAAGA
WO 09415
AATGACCAAAAATCAGGTTAGCCTGACTTGTCTGGTGAAAGGCTTCTACCCGAG
CGATATTGCAGTTGAATGGGAGAGCAACGGCCAGCCTGAGAACAACTATAAGA
CGACCCCGCCAGTGCTGGACAGCGATGGCAGCTTCTTTTTGTATTCTCGTCTGAC
CGTGGACAAGTCCCGTTGGCAAGAGGGCAATGTGTTCAGCTGTTCTGTCATGCA
CGAAGCGCTGCATAACCATTACACCCAGAAGTCCCTGAGCCTGTCGCTGGGCAA
ATAA
Anti-CD47 -13m HC:
ATGCAAGTCCAATTGGTCCAGAGCGGTGCGGAAGTCAAGAAACCGGGTGCAAG
CGTCAAAGTTTCGTGCAAGGCGAGCGGTTTCAATATCAAAGACTATTATCTGCA
CTGGGTTCGTCAGGCTCCGGGCCAAGGCCTGGAGTGGATGGGTTGGATCGATCC
GGACCAGGGCGACACGGAGTACGCTCAGAAGCTGCAGGGTCGTGTTACCATGA
CCACCGACACCAGCACGAGCACCGCGTACATGGAACTGCGCTCTCTGCGTTCGG
CCGCGGTGTACTATTGCAACGCCGCGTACGGTAGCAGCAGCTATCCGA
TGGATTATTGGGGTCAAGGCACTACGGTGACTGTCAGCAGCGCCAGCACCAAG
GGCCCGTCTGTGTTTCCGTTGGCACCGTGCAGCCGTAGCACTAGCGAATCCACT
GCAGCGCTGGGTTGCCTGGTTAAGGACTATTTCCCGGAGCCGGTTACCGTGTCC
TGGAACTCTGGCGCCCTGACCAGCGGTGTTCACACGTTTCCAGCCGTCCTGCAG
AGCAGCGGTCTGTACAGCCTGAGCTCGGTGGTGACCGTTCCGAGCAGCTCTCTG
GGTACCAAAACCTATACCTGTAATGTCGATCACAAACCGTCTAACACGAAGGTC
GATAAACGTGTTGAAAGCAAGTACGGTCCGCCTTGTCCGCCGTGCCCGGCACCG
GAGTTTGAGGGCGGTCCGTCCGTATTCCTGTTCCCGCCGAAACCGAAAGATACC
TTGATGATTAGCCGTACGCCAGAGGTCACGTGCGTCGTGGTGGACGTTAGCCAA
GAGGATCCGGAAGTCCAATTCAACTGGTACGTGGACGGTGTCGAGGTGCACAA
TGCCAAAACCAAGCCGCGTGAAGAACAGTTTAACAGCACTTACCGCGTCGTTAG
CGTCCTGACCGTGCTGCACCAAGATTGGCTGAATGGTAAAGAGTACAAGTGCA
AGGTTAGCAATAAGGGTCTGCCGAGCAGCATCGAGAAAACCATTAGCAAGGCG
AAAGGTCAACCGCGCGAGCCACAGGTCTACACGCTGCCGCCGAGCCAAGAAGA
AATGACCAAAAATCAGGTTAGCCTGACTTGTCTGGTGAAAGGCTTCTACCCGAG
CGATATTGCAGTTGAATGGGAGAGCAACGGCCAGCCTGAGAACAACTATAAGA
CGACCCCGCCAGTGCTGGACAGCGATGGCAGCTTCTTTTTGTATTCTCGTCTGAC
CGTGGACAAGTCCCGTTGGCAAGAGGGCAATGTGTTCAGCTGTTCTGTCATGCA
CGAAGCGCTGCATAACCATTACACCCAGAAGTCCCTGAGCCTGTCGCTGGGCAA
ATAA
Anti-CD47 IgG4PE-5m HC:
ATGCAAATGCAATTGGTACAAAGCGGTGCGGAAGTAAAGAAACCGGGTTCGTC
GGTAAAGGTTAGCTGTAAAGCTTCTGGCTTCAATATCAAGGATTACTATCTGCA
CTGGGTGCGTCAGGCGCCAGGTCAGGCCTTGGAATGGATGGGCTGGATTGACCC
AGGTGACACCGAATATGCCCAAAAGTTTCAGGGTCGTGTGACCATCAC
CCGTGACCGTAGCACCTCCACCGCATATATGGAGCTGCGTAGCCTGCGCAGCGA
AGATACTGCGGTGTATTACTGCAATGCGGCCTATGGTAGCAGCTCCTATCCGAT
GGATTACTGGGGCCAGGGTACCACGGTGACGGTTAGCAGCGCAAGCACCAAGG
GCCCGTCTGTGTTTCCGTTGGCACCGTGCAGCCGTAGCACTAGCGAATCCACTG
CAGCGCTGGGTTGCCTGGTTAAGGACTATTTCCCGGAGCCGGTTACCGTGTCCT
GGAACTCTGGCGCCCTGACCAGCGGTGTTCACACGTTTCCAGCCGTCCTGCAGA
GCAGCGGTCTGTACAGCCTGAGCTCGGTGGTGACCGTTCCGAGCAGCTCTCTGG
GTACCAAAACCTATACCTGTAATGTCGATCACAAACCGTCTAACACGAAGGTCG
ATAAACGTGTTGAAAGCAAGTACGGTCCGCCTTGTCCGCCGTGCCCGGCACCGG
AGTTTGAGGGCGGTCCGTCCGTATTCCTGTTCCCGCCGAAACCGAAAGATACCT
TGATGATTAGCCGTACGCCAGAGGTCACGTGCGTCGTGGTGGACGTTAGCCAAG
AGGATCCGGAAGTCCAATTCAACTGGTACGTGGACGGTGTCGAGGTGCACAAT
GCCAAAACCAAGCCGCGTGAAGAACAGTTTAACAGCACTTACCGCGTCGTTAG
GACCGTGCTGCACCAAGATTGGCTGAATGGTAAAGAGTACAAGTGCA
AGGTTAGCAATAAGGGTCTGCCGAGCAGCATCGAGAAAACCATTAGCAAGGCG
AAAGGTCAACCGCGCGAGCCACAGGTCTACACGCTGCCGCCGAGCCAAGAAGA
AATGACCAAAAATCAGGTTAGCCTGACTTGTCTGGTGAAAGGCTTCTACCCGAG
CGATATTGCAGTTGAATGGGAGAGCAACGGCCAGCCTGAGAACAACTATAAGA
CGACCCCGCCAGTGCTGGACAGCGATGGCAGCTTCTTTTTGTATTCTCGTCTGAC
CGTGGACAAGTCCCGTTGGCAAGAGGGCAATGTGTTCAGCTGTTCTGTCATGCA
CGAAGCGCTGCATAACCATTACACCCAGAAGTCCCTGAGCCTGTCGCTGGGCAA
ATAA
Anti-CD47 IgK:
ATGAACATCCAAATGACTCAATCCCCATCCGCAATGTCCGCATCCGTAGGTGAC
CGCGTGACCATCACGTGCAAGGCGAGCCAGGATATTCATCGTTATCTGAGCTGG
TTTCAACAGAAACCGGGCAAGGTTCCTAAGCATCTGATTTACCGCGCGAACCGC
TTGGTTAGCGGTGTTCCGAGCCGTTTTAGCGGCAGCGGTTCTGGCACCGAGTTC
ACCCTGACGATCTCCAGCCTGCAACCGGAAGATTTTGCGACGTACTACTGCCTG
CAGTATGACGAGTTCCCGTATACCTTTGGTGGTGGTACGAAGGTGGAAATCAAA
CGTACTGTGGCCGCTCCGAGCGTTTTCATTTTTCCGCCGTCGGATGAGCAATTGA
AATCTGGTACCGCGAGCGTCGTTTGTCTGCTGAACAATTTCTACCCGCGTGAGG
CTAAGGTGCAATGGAAGGTCGATAACGCGCTGCAGAGCGGTAATAGCCAGGAA
AGCGTCACCGAACAGGATAGCAAAGACAGCACCTACTCTTTGAGCAGCACCCT
GACCCTGAGCAAGGCCGACTATGAGAAACACAAAGTTTACGCATGTGAGGTCA
CGCACCAGGGCCTGAGCAGCCCGGTGACCAAAAGCTTCAATCGTGGCGAATGC
In certain embodiments, a polynucleotide provided herein is operably linked to a
promoter for expression of such polynucleotide sequence in a host cell. In certain embodiments,
the promoter is d form the genome of mammalian cells (e.g., othionein promoter) or
from mammalian s (e.g., the adenovirus late er, the vaccinia virus 7.5K promoter).
In a specific embodiment, the expression of nucleotide sequences encoding antibodies described
herein is regulated by a constitutive promoter, inducible promoter or tissue specific promoter.
In specific aspects, provided herein is a polynucleotide comprising a nucleotide
sequence encoding an antibody comprising a light chain and a heavy chain, e.g., a separate light
chain and heavy chain. With respect to the light chain, in a specific embodiment, a
polynucleotide provided herein comprises a nucleotide sequence encoding a kappa light chain.
In r c embodiment, a polynucleotide provided herein comprises a nucleotide
sequence encoding a lambda light chain. In yet r specific embodiment, a polynucleotide
provided herein compiises a nucleotide sequence encoding an antibody described herein
comprising a human kappa light chain or a human lambda light chain. For example, human
constant region ces can be those bed in US. Patent No, 5,693,780.
] In a ular embodiment, a polynucleotide provided herein comprises a nucleotide
sequence ng an antibody bed herein, which immunospecifically binds to a CD47
polypeptide, wherein the antibody comprises a heavy chain, wherein the constant region of the
heavy chain comprises the amino acid sequence of a human gamma (y) heavy chain constant
region, for example, human gamma (y) 1 heavy chain constant region, human gamma (7) 2 heavy
chain constant region, human gamma (y) 3 heavy chain constant region, or human gamma (y) 4
heavy chain constant region.
.2.2 Cells and s
In certain aspects, provided herein are cells (e.g., host cells) sing (e.g.,
recombinantly) antibodies described herein (or an antigen-binding fragment f) which
specifically bind to CD47 and related polynucleotides and expression vectors, for example,
polynucleotides and expression vectors le for use in CF expression systems. Provided
herein are vectors (e.g., expression vectors) comprising polynucleotides comprising nucleotide
sequences encoding anti-CD47 antibodies or a fragment for recombinant expression in CF
expression systems. In a particular aspect, provided herein are methods for producing an anti-
CD47 antibody bed herein, comprising expressing such an antibody using a CF expression
system, for example, under conditions resulting in improved antibody expression titer or yield.
In certain s, provided herein are s (e.g., expression vectors) comprising
polynucleotides comprising tide sequences encoding anti-CD47 antibodies or a fragment
for recombinant sion in host cells, e. g., in mammalian cells. Also provided herein are host
cells comprising such vectors for recombinantly expressing anti-CD47 antibodies described
herein (e.g., human or humanized antibody). In a particular , provided herein are methods
for producing an antibody described herein, comprising expressing such an antibody using host
cells,
Recombinant expression of an antibody described herein (e.g., a full-length antibody,
heavy and/or light chain of an antibody, or a single chain antibody described herein) that
specifically binds to CD47 involves construction of an expression vector containing a
polynucleotide that encodes the dy. Once a polynucleotide encoding an antibody molecule,
heavy and/or light chain of an antibody, or a fragment thereof (e.g., heavy and/or light chain
le domains) described herein has been obtained, the vector for the production of the
antibody molecule can be produced by recombinant DNA technology using techniques well-
WO 09415
known in the art. Thus, methods for preparing a protein by sing a polynucleotide
containing an antibody or antibody nt (e.g., light chain or heavy chain) encoding
tide sequence are described herein. Methods which are well known to those skilled in the
art can be used to construct expression vectors containing antibody or antibody fragment (e.g.,
light chain or heavy chain) coding ces and appropriate transcriptional and translational
control signals. These methods include, for example, in vitro recombinant DNA techniques,
synthetic techniques, and in viva genetic recombination. Also provided are replicable vectors
comprising a nucleotide sequence encoding an antibody le described herein, a heavy or
light chain of an antibody, a heavy or light chain variable domain of an dy or a fragment
f, or a heavy or light chain CDR, operably linked to a promoter. Such vectors can, for
example, include the nucleotide sequence encoding the constant region of the antibody molecule
(see, e.g, International Publication Nos. WO 86/05807 and WO 89/01036; and US. Patent No.
,122,464) and le domains of the antibody can be cloned into such a vector for expression
of the entire heavy, the entire light chain, or both the entire heavy and light chains.
An expression vector can be transferred to a cell (e.g, host cell) by conventional
techniques and the resulting cells can then be ed by conventional techniques to produce an
antibody described herein or a fragment thereof. Thus, provided herein are host cells containing
a polynucleotide encoding an antibody described herein or nts thereof, or a heavy or light
chain thereof, or fragment thereof, or a single chain antibody described herein, operably linked to
a promoter for expression of such sequences in the host cell. In certain embodiments, for the
expression of double-chained antibodies, vectors encoding both the heavy and light chains,
individually, can be co-expressed in the host cell for expression of the entire immunoglobulin
molecule, as detailed below. In certain embodiments, a host cell contains a vector comprising a
polynucleotide encoding both the heavy chain and light chain of an antibody described , or
a fragment thereof. In specific embodiments, a host cell ns two different vectors, a first
vector comprising a polynucleotide encoding a heavy chain or a heavy chain le region of
an antibody described herein, or a fragment thereof, and a second vector comprising a
polynucleotide encoding a light chain or a light chain variable region of an antibody described
herein, or a nt thereof. In other embodiments, a first host cell ses a first vector
compiising a polynucleotide encoding a heavy chain or a heavy chain variable region of an
antibody described herein, or a fragment thereof, and a second host cell comprises a second
2015/067642
vector comprising a polynucleotide encoding a light chain or a light chain variable region of an
antibody described herein. In specific embodiments, a heavy chain/heavy chain variable region
expressed by a first cell associated with a light chain/light chain variable region of a second cell
to form an anti-CD47 antibody described herein or an antigen-binding fragment thereof. In
certain embodiments, provided herein is a population of host cells comprising such first host cell
and such second host cell.
In a particular embodiment, provided herein is a population of vectors comprising a
first vector sing a polynucleotide encoding a light chain/light chain variable region of an
anti-CD47 antibody described herein, and a second vector comprising a polynucleotide encoding
a heavy chain/heavy chain variable region of an anti-CD47 antibody described herein.
A variety of host-expression vector systems can be ed to express antibody
molecules described herein (see, e.g., US. Patent No. 5,807,715). Such host-expression systems
represent vehicles by which the coding sequences of interest can be produced and subsequently
purified, but also represent cells which can, when transformed or ected with the appropriate
nucleotide coding ces, express an antibody molecule described herein in situ. These
include but are not limited to microorganisms such as bacteria (e.g., E. coli and B. sublilz's)
transformed with recombinant bacteriophage DNA, plasmid DNA or cosmid DNA expression
vectors containing antibody coding sequences, yeast (e.g., Saccharomyces Pichia) transformed
with recombinant yeast expression s containing antibody coding sequences; insect cell
s infected with recombinant virus sion vectors (e.g., baculovirus) containing
antibody coding ces; plant cell s (e.g., green algae such as domonas
reinhardtii) infected with recombinant virus expression vectors (e.g., cauliflower mosaic virus,
CaMV; tobacco mosaic virus, TMV) or transformed with recombinant d expression
vectors (e.g., Ti plasmid) containing antibody coding sequences; or mammalian cell systems
(e.g., cos, CHO, BHK, MDCK, HEK 293, N80, PER.C6, VERO, CRL7030, HsS78Bst, HeLa,
and NIH 3T3 cells) harboring recombinant expression constructs containing promoters derived
from the genome of ian cells (e.g, othionein promoter) or from mammalian
viruses (e.g., the adenovirus late promoter; the vaccinia virus 7.5K promoter). In a specific
ment, cells for expressing dies described herein or an antigen-binding fragment
thereof are CHO cells, for example CHO cells from the CHO GS TM (Lonza). In a
specific embodiment, a mammalian expression vector is pOptiVECTM or pcDNA3.3. In a
particular embodiment, bacterial cells such as Escherichia coli, or eukaryotic cells (e.g.,
mammalian cells), especially for the expression of whole recombinant antibody molecule, are
used for the expression of a inant antibody molecule. For example, mammalian cells
such as e hamster ovary (CHO) cells, in conjunction with a vector such as the major
intermediate early gene promoter element from human cytomegalovirus is an ive
expression system for antibodies (Foecking et al., 1986, Gene 45: 101; and Cockett er al., 1990,
Bio/Technology 8:2). In certain embodiments, antibodies bed herein are produced by
CHO cells or NSO cells. In a specific embodiment, the expression of nucleotide sequences
encoding antibodies bed herein which immunospeciflcally bind to CD47 is regulated by a
constitutive promoter, inducible promoter or tissue specific promoter.
In bacterial systems, a number of expression vectors can be advantageously selected
depending upon the use intended for the antibody molecule being expressed. For example, when
a large quantity of such an antibody is to be produced, for the generation of pharmaceutical
compositions of an dy molecule, vectors which direct the expression of high levels of
fusion n products that are readily purifled can be desirable. Such vectors include, but are
not limited to, the E. coli expression vector pUR278 (Ruther et al., 1983, EMBO 12: 1791), in
which the antibody coding sequence can be ligated individually into the vector in frame with the
lac Z coding region so that a fusion n is produced, pIN vectors e & Inouye, 1985,
Nucleic Acids Res. 13:3101-3109; Van Heeke & Schuster, 1989, J. Biol. Chem. 24:5503-5509);
and the like. For example, pGEX vectors can also be used to s foreign polypeptides as
fusion proteins with hione 5-transferase (GST). In general, such fusion ns are soluble
and can easily be purified from lysed cells by adsorption and binding to matrix glutathione
agarose beads followed by elution in the presence of free glutathione. The pGEX s are
designed to include thrombin or factor Xa protease cleavage sites so that the cloned target gene
product can be released from the GST moiety.
In an insect system, Autographa californica nuclear polyhedrosis virus (AcNPV), for
example, can be used as a vector to express foreign genes. The virus grows in Spodoplera
frugiperda cells. The antibody coding sequence can be cloned individually into non-essential
regions (for example the polyhedrin gene) of the virus and placed under control of an AcNPV
promoter (for e the polyhedrin promoter).
In mammalian host cells, a number of viral-based expression systems can be utilized.
In cases where an adenovirus is used as an expression vector, the antibody coding sequence of
interest can be ligated to an adenovirus ription/translation control x, e.g., the late
promoter and tripartite leader sequence. This chimeric gene can then be inserted in the
adenovirus genome by in vitro or in vivo recombination. Insertion in a sential region of
the viral genome (e.g., region E1 or E3) will result in a recombinant virus that is viable and
e of expressing the dy molecule in infected hosts (e.g., see Logan & Shenk, 1984,
Proc. Natl. Acad. Sci. USA 8 1:355-359). Specific initiation signals can also be required for
efficient ation of inserted antibody coding ces. These signals include the ATG
initiation codon and adjacent sequences. Furthermore, the initiation codon must be in phase with
the reading frame of the d coding sequence to ensure translation of the entire insert. These
exogenous translational control signals and initiation codons can be of a variety of origins, both
natural and synthetic. The efficiency of expression can be enhanced by the inclusion of
riate transcription er elements, transcription terminators, etc. (see, e.g., r el
al., 1987, Methods in Enzymol. 153 :5 1-544).
In addition, a host cell strain can be chosen which modulates the expression of the
inserted sequences, or modifies and processes the gene product in the specific fashion desired.
Such modifications (e.g., glycosylation) and processing (e.g., cleavage) of protein products can
be important for the function of the protein. Different host cells have characteristic and specific
mechanisms for the post-translational processing and modification of proteins and gene products.
Appropriate cell lines or host systems can be chosen to ensure the correct ation and
processing of the foreign protein expressed. To this end, eukaryotic host cells which s the
cellular machinery for proper processing of the primary transcript, glycosylation, and
phosphorylation of the gene product can be used. Such mammalian host cells include but are not
limited to CHO, VERO, BHK, Hela, cos, MDCK, HEK 293, NIH 3T3, W138, BT483, HsS78T,
HTB2, BT20 and T47D, NSO (a murine myeloma cell line that does not endogenously produce
any immunoglobulin chains), CRL703O and HsS78Bst cells. In certain embodiments, anti-
CD47 antibodies described herein (e.g., an antibody comprising the CDRs of any one of
antibodies Ab235-Ab255) are produced in mammalian cells, such as CHO cells.
For long-term, high-yield production of recombinant ns, stable expression cells
can be generated. For example, cell lines which stably express an D47 antibody described
herein or an antigen-binding fragment thereof can be engineered. In specific embodiments, a cell
provided herein stably expresses a light chain/light chain le domain and a heavy
chain/heavy chain variable domain which associate to form an antibody described herein or an
antigen-binding fragment thereof.
In certain s, rather than using expression vectors which contain viral origins of
replication, host cells can be transformed with DNA controlled by appropriate expression control
elements (e.g., er, enhancer, sequences, transcription ators, polyadenylation sites,
etc), and a selectable marker. ing the introduction of the foreign DNA/polynucleotide,
engineered cells can be allowed to grow for 1-2 days in an enriched media, and then are switched
to a selective media. The selectable marker in the recombinant plasmid confers resistance to the
selection and allows cells to stably integrate the plasmid into their chromosomes and grow to
form foci which in turn can be cloned and expanded into cell lines. This method can
advantageously be used to engineer cell lines which express an anti-CD47 antibody described
herein or a fragment thereof. Such engineered cell lines can be particularly useful in screening
and evaluation of compositions that interact ly or indirectly with the antibody molecule.
A number of selection systems can be used, including but not limited to, the herpes
simplex virus thymidine kinase (Wigler el al., 1977, Cell 11:223), hypoxanthineguanine
phosphoribosyltransferase lska & Szybalski, 1992, Proc. Natl. Acad. Sci. USA 48:202),
and adenine phosphoribosyltransferase (Lowy ez‘ £11., 1980, Cell 22:8-17) genes can be employed
in tk-, hgprt- or aprt-cells, respectively. Also, antimetabolite resistance can be used as the basis
of selection for the following genes: dhfr, which s resistance to rexate (Wigler et
al., 1980, Natl. Acad. Sci. USA 77357, O’Hare el al., 1981, Proc. Natl. Acad. Sci. USA
78: 1527), gpt, which confers resistance to mycophenolic acid (Mulligan & Berg, 1981, Proc.
Natl. Acad. Sci. USA 782072); neo, which confers resistance to the aminoglycoside G—418 (Wu
and Wu, 1991, Biotherapy 3:87-95, Tolstoshev, 1993, Ann. Rev. acol. l. 32:573-
596, Mulligan, 1993, Science 260:926-932; and Morgan and Anderson, 1993, Ann. Rev.
m. -217, May, 1993, TTB TECH 11(5):155—2 15), and hygro, which confers
resistance to hygromycin (Santerre et al., 1984, Gene 30: 147). Methods commonly known in the
art of recombinant DNA technology can be routinely applied to select the d recombinant
clone, and such methods are described, for e, in Ausubel et al. (eds), Current Protocols in
Molecular Biology, John Wiley & Sons, NY (1993), Kriegler, Gene Transfer and Expression, A
Laboratory Manual, Stockton Press, NY (1990); and in Chapters 12 and 13, Dracopoli et al.
(eds), Current Protocols in Human Genetics, John Wiley & Sons, NY (1994), Colberre-Garapin
et al., 1981, J. Mol. Biol. 150: 1, which are incorporated by nce herein in their entireties.
The expression levels of an antibody molecule can be increased by vector
amplification (for a , see Bebbington and hel, The use of s based on gene
amplification for the expression of cloned genes in mammalian cells in DNA cloning, Vol. 3
(Academic Press, New York, 1987)). When a marker in the vector system expressing antibody is
amplifiable, increase in the level of inhibitor present in culture of host cell will increase the
number of copies of the marker gene. Since the amplified region is associated with the antibody
gene, production of the antibody will also increase e et al., 1983, Mol. Cell. Biol. 3:257).
The host cell can be co-transfected with two or more expression vectors bed
herein, the first vector encoding a heavy chain derived polypeptide and the second vector
encoding a light chain derived polypeptide. The two vectors can contain identical selectable
markers which enable equal expression of heavy and light chain polypeptides. The host cells can
be co-transfected with different amounts of the two or more expression vectors, For example,
host cells can be ected with any one of the following ratios of a first expression vector and
a second expression vector: 1:1, 1:2, 1:3, 1:4, 1:5, 1:6, 1:7, 1:8, 1:9, 1:10,1:12, 1:15, 1:20, 1:25,
1:30,1:35,1:40,1:45, or 1:50.
Alternatively, a single vector can be used which encodes, and is capable of expressing,
both heavy and light chain polypeptides. In such situations, the light chain should be placed
before the heavy chain to avoid an excess of toxic free heavy chain (Proudfoot, 1986, Nature
322:52; and Kohler, 1980, Proc. Natl. Acad. Sci. USA 77:2197-2199). The coding sequences for
the heavy and light chains can comprise cDNA or genomic DNA. The expression vector can be
monocistronic or multicistronic. A multicistronic nucleic acid uct can encode 2, 3, 4, 5, 6,
7, 8, 9, 10 or more, or in the range of 2-5, 5-10 or 10-20 genes/nucleotide sequences. For
example, a bicistronic nucleic acid construct can se in the following order a promoter, a
first gene (e.g., heavy chain of an antibody described ), and a second gene and (e.g., light
chain of an antibody bed herein). In such an expression vector, the transcription of both
genes can be driven by the promoter, whereas the translation of the mRNA from the first gene
can be by a cap—dependent scanning mechanism and the translation of the mRNA from the
second gene can be by a cap-independent mechanism, e.g., by an IRES.
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Once an antibody molecule described herein has been produced by inant
expression, it can be purified by any method known in the art for purification of an
immunoglobulin molecule, for example, by chromatography (e.g., ion exchange, affinity,
particularly by affinity for the specific antigen after Protein A, and sizing column
chromatography), centrifugation, differential solubility, or by any other standard technique for
the ation of proteins. r, the antibodies described herein can be fused to logous
polypeptide sequences described herein or otherwise known in the art to facilitate purification.
In c embodiments, an antibody or antigen-binding fragment described herein is
isolated or purified. Generally, an isolated antibody is one that is substantially free of other
dies with different antigenic specificities than the isolated antibody. For example, in a
particular embodiment, a preparation of an antibody described herein is substantially free of
cellular material and/or chemical precursors. The language “substantially free of ar
material” includes preparations of an dy in which the antibody is separated from cellular
components of the cells from which it is isolated or recombinantly produced. Thus, an antibody
that is substantially free of cellular material es preparations of antibody having less than
about 30%, 20%, 10%, 5%, 2%, 1%, 0.5%, or 0.1% (by dry weight) of heterologous protein (also
referred to herein as a minating protein”) and/or variants of an antibody, for example,
different post-translational modified forms of an antibody or other different versions of an
dy (e.g., antibody fragments). When the antibody is recombinantly produced, it is also
generally substantially free of culture medium, 1'.e., culture medium represents less than about
%, 10%, 2%, 1%, 0.5%, or 0.1% of the volume of the protein preparation. When the antibody
is produced by chemical synthesis, it is generally substantially free of chemical precursors or
other chemicals, i.e., it is separated from chemical precursors or other chemicals which are
involved in the synthesis of the protein, Accordingly, such preparations of the antibody have
less than about 30%, 20%, 10%, or 5% (by dry weight) of chemical precursors or compounds
other than the antibody of interest. In a c embodiment, antibodies bed herein are
isolated or purified.
.3 Pharmaceutical itions and Kits
Provided herein are compositions, pharmaceutical compositions, and kits comprising
one or more antibodies (e.g., anti-CD47 antibodies) described herein, or antigen-binding
nts thereof, or conjugates thereof. In particular aspects, compositions (e.g.,
pharmaceutical compositions) described herein can be for in vitro, in vivo, or ex vivo uses. Non-
limiting examples of uses include uses to modulate (e.g, inhibit or induce/enhance) CD47
activity and uses to manage or treat a disorder, for example, cancer. In specific embodiments,
ed herein is a pharmaceutical composition sing an antibody (e.g., a humanized
antibody) described herein (or an antigen-binding fragment f) and a pharmaceutically
acceptable carrier or excipient.
As used herein, the term “pharmaceutically acceptable” means being approved by a
regulatory agency of the Federal or a state government, or listed in the US. Pharmacopeia,
European Pharmacopeia or other generally recognized Pharmacopeia for use in animals, and
more particularly in .
Formulations containing one or more antibodies provided herein or an antigen-
binding fragment thereof can be prepared for storage by mixing the antibody having the desired
degree of purity with optional physiologically acceptable carriers, excipients or stabilizers
(Remington’s Pharmaceutical Sciences (1990) Mack Publishing Co, Easton, PA; Remington:
The Science and Practice of Pharmacy, 21st ed. (2006) Lippincott Williams & s,
Baltimore, MD). Such formulations can, for example, be in the form of, e.g., lized
formulations or aqueous solutions. Pharmaceutical carriers suitable for administration of the
dies provided herein include any such rs known to those skilled in the art to be
suitable for the particular mode of administration. Acceptable carriers, excipients, or stabilizers
are nontoxic to recipients at the dosages and trations employed, and include buffers such
as phosphate, citrate, and other organic acids; and/or non-ionic surfactants such as TWEENTM,
ICSTM or polyethylene glycol (PEG).
ations to be used for in vivo stration can be sterile. This can be readily
accomplished, for example, by filtration through, e.g., sterile filtration membranes.
In specific aspects, the pharmaceutical compositions provided herein contain
eutically effective amounts of one or more of the antibodies or antigen-binding fragments
provided herein in a ceutically acceptable carrier. Such pharmaceutical compositions are
useful in the tion, treatment, management or amelioration of a condition or disorder
described herein or one or more symptoms thereof.
Compositions provided herein can contain one or more dies provided herein or
an antigen-binding fragment f. In one embodiment, compositions are provided wherein
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antibodies or antigen-binding fragments described herein are formulated into suitable
pharmaceutical preparations, such as solutions, suspensions, powders, sustained release
formulations or s in sterile solutions or suspensions for parenteral administration, or as
transdermal patch preparation and dry powder inhalers.
In one embodiment, compositions provided herein are formulated for single dosage
administration. To formulate a composition, the weight fraction of compound is dissolved,
suspended, dispersed or otherwise mixed in a selected carrier at an effective concentration such
that the treated ion is relieved, prevented, or one or more symptoms are ameliorated.
In certain aspects, an antibody provided herein is included in the ceutically
acceptable carrier in an effective amount sufficient to exert a therapeutically useful effect in the
e of, or with minimal or negligible, undesirable side effects on the patient treated.
Concentrations of anti-CD47 antibody in a pharmaceutical composition provided
herein will depend on, e.g., the physicochemical characteristics of the antibody, the dosage
schedule, and amount stered as well as other factors.
Pharmaceutical compositions described herein are provided for stration to
humans or s (e.g., mammals) in unit dosage forms, such as sterile eral (e.g.,
intravenous) solutions or suspensions containing suitable quantities of the compounds or
pharmaceutically acceptable derivatives thereof. Pharmaceutical compositions are also provided
for administration to humans and animals in unit dosage form, such as tablets, capsules, pills,
powders, granules, and oral or nasal solutions or suspensions, and oil-water ons containing
suitable quantities of an anti-CD47 dy or pharmaceutically acceptable derivatives thereof.
The antibody is, in one embodiment, formulated and administered in unit—dosage forms or
multiple-dosage forms. Unit-dose forms as used herein refers to ally discrete units
suitable for human or animal (e.g., mammal) subjects and packaged dually. Each unit-dose
contains a predetermined ty of an anti-CD47 dy sufficient to produce the desired
therapeutic effect, in association with the required pharmaceutical r, vehicle or diluent.
Examples of unit-dose forms include ampoules and syringes and individually packaged tablets or
capsules. Unit-dose forms can be administered in fractions or multiples thereof. A multiple-
dose form is a plurality of cal unit-dosage forms packaged in a single container to be
administered in segregated unit-dose form. Examples of multiple—dose forms include vials,
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bottles of tablets or capsules or bottles. Hence, in specific s, le dose form is a
multiple of unit—doses which are not segregated in packaging.
In n embodiments, one or more anti-CD47 dies described herein or an
antigen-binding fragment thereof are in a liquid pharmaceutical formulation. Liquid
pharmaceutically administrable compositions can, for example, be ed by dissolving,
dispersing, or otherwise mixing an antibody and optional pharmaceutical adjuvants in a carrier,
such as, for example, water, saline, aqueous dextrose, glycerol, glycols, and the like, to thereby
form a solution or suspension. In certain embodiments, a pharmaceutical composition provided
herein to be administered can also contain minor amounts of nontoxic auxiliary substances such
as wetting , emulsifying agents, solubilizing agents, and pH buffering agents and the like.
Methods of ing such dosage forms are known, or will be nt, to those
skilled in this art, for example, see, e. g., Remington’s Pharmaceutical Sciences (1990) Mack
Publishing Co., Easton, PA; Remington: The e and ce of Pharmacy, 21st ed, (2006)
Lippincott Williams & Wilkins, Baltimore, MD.
Parenteral stration, in one embodiment, is characterized by injection, either
subcutaneously, intramuscularly or intravenously is also contemplated herein. Injectables can be
prepared in conventional forms, either as liquid solutions or suspensions, solid forms suitable for
solution or sion in liquid prior to injection, or as emulsions. The injectables, solutions and
emulsions also contain one or more excipients. Suitable excipients are, for e, water,
saline, dextrose, glycerol or ethanol. Other routes of administration may include, enteric
administration, intracerebral administration, nasal administration, intraarterial administration,
intracardiac administration, intraosseous infusion, intrathecal administration, and intraperitoneal
administration.
] Preparations for parenteral administration include sterile solutions ready for injection,
sterile dry soluble products, such as lyophilized powders, ready to be combined with a solvent
just prior to use, including hypodermic tablets, e suspensions ready for injection, sterile dry
insoluble products ready to be combined with a vehicle just prior to use and sterile ons.
The solutions can be either aqueous or nonaqueous.
If administered intravenously, suitable carriers include logical saline or
phosphate buffered saline (PBS), and solutions containing thickening and solubilizing agents,
such as glucose, polyethylene glycol, and polypropylene glycol and mixtures thereof.
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Pharmaceutically acceptable carriers used in parenteral ations include aqueous
es, nonaqueous vehicles, crobial agents, isotonic agents, buffers, antioxidants, local
anesthetics, ding and dispersing agents, emulsifying agents, tering or chelating
agents and other pharmaceutically acceptable substances.
Pharmaceutical carriers also include ethyl l, polyethylene glycol and propylene
glycol for water miscible vehicles; and sodium hydroxide, hydrochloric acid, citiic acid or lactic
acid for pH adjustment.
In certain embodiments, intravenous or rten'al infusion of a sterile aqueous
solution containing an anti-CD47 antibody or fragment described herein is an effective mode of
ammmwwmrAmmmmmmMMmmafiwbmmwmmprwMMomMWMMn
containing an anti-CD47 antibody bed herein injected as necessary to produce the desired
pharmacological effect.
In specific embodiments, an anti-CD47 antibody described herein can be suspended
mmMmmeMmTMEmdfimwMgmmewm®wmammm
of factors, including the intended mode of administration and the solubility of the compound in
the selected carrier or vehicle.
] In other embodiments, the pharmaceutical formulations are lyophilized powders,
which can be reconstituted for administration as solutions, emulsions and other mixtures. They
can also be reconstituted and formulated as solids or gels.
Lyophilized powder can, for example, be prepared by dissolving an anti-CD47
antibody provided herein, in a suitable solvent. In some embodiments, the lyophilized powder is
sterile. Suitable solvents can contain an excipient which improves the stability or other
pharmacological ent of the powder or reconstituted solution, prepared from the powder.
Excipients that can be used include, but are not limited to, dextrose, al, fructose, corn syrup,
l, glycerin, glucose, sucrose or other suitable agent. A suitable solvent can also contain a
, such as citrate, sodium or potassium phosphate or other such buffer known to those of
skill in the art at, in one embodiment, about neutral pH. Subsequent sterile filtration of the
solution followed by lyophilization under standard conditions known to those of skill in the art
provides an example of a formulation. In one embodiment, the resulting solution will be
ioned into vials for lyophilization. Lyophilized powder can be stored under appropriate
conditions, such as at about 4 0C to room temperature.
Reconstitution of this lyophilized powder with water for injection provides a
formulation for use in parenteral administration. For reconstitution, the lyophilized powder is
added to sterile water or other suitable carrier.
In certain aspects, anti—CD47 antibodies provided herein can be formulated for local
administration or topical application, such as for topical application to the skin and mucous
membranes, such as in the eye, in the form of gels, , and lotions and for application to the
eye or for intracisternal or intraspinal application. Topical administration is contemplated for
transdermal delivery and also for administration to the eyes or mucosa, or for inhalation
therapies. Nasal solutions of the active compound alone or in combination with other
pharmaceutically acceptable excipients can also be administered.
Anti—CD47 dies and other itions provided herein can also be formulated
to be targeted to a particular tissue, organ, or other area of the body of the subject to be treated.
Many such targeting methods are well known to those of skill in the art. All such targeting
methods are contemplated herein for use in the t compositions. For non-limiting examples
oftargeting methods, see, e.g., US. Patent Nos. 6,316,652, 6,274,552, 6,271,359, 6,253,872,
6,139,865, 6,131,570, 751, 6,071,495, 082, 6,048,736, 6,039,975, 6,004,534,
,985,307, 366, 5,900,252, 5,840,674, 5,759,542 and 5,709,874. In some embodiments,
anti-CD47 antibodies described herein are ed (or otherwise administered) to the visual
organs, bone , gastrointestinal tract, lungs, brain, or joints. In specific embodiments, an
anti-CD47 dy described herein is capable of ng the blood-brain barrier.
Provided herein is a pharmaceutical pack or kit comprising one or more containers
filled with one or more of the ingredients of the pharmaceutical compositions described herein,
such as one or more anti-CD47 antibodies provided herein. Optionally associated with such
container(s) can be a notice in the form prescribed by a governmental agency regulating the
cture, use or sale of pharmaceuticals or biological products, which notice reflects
approval by the agency of manufacture, use or sale for human administration.
Also provided herein are kits comprising one or more of the antibodies or antibody
nts described herein. In one embodiment, a kit ses an antibody or antibody
fragment bed herein, in one or more containers. In a specific embodiment, kits described
herein contain a substantially purified CD47 antigen as a control. In another specific
ment, the kits described herein further comprise a control antibody which does not react
WO 09415
with a CD47 antigen. In another specific embodiment, kits described herein contain one or more
ts for detecting the binding of a d antibody to a CD47 antigen (e.g, the antibody
can be conjugated to a detectable substrate such as a fluorescent compound, an enzymatic
substrate, a ctive compound or a luminescent compound, or a second antibody which
recognizes the first antibody can be conjugated to a detectable substrate). In specific
embodiments, a kit provided herein can include a recombinantly produced or chemically
synthesized CD47 antigen. The CD47 antigen provided in the kit can also be attached to a solid
support. In a more specific embodiment, the detecting means of the above described kit includes
a solid support to which a CD47 antigen is attached. Such a kit can also include a non-attached
reporter-labeled anti-human antibody or anti-mouse/rat antibody. In this embodiment, binding of
the antibody to the CD47 antigen can be detected by binding of the said reporter-labeled
antibody.
.4 Uses and Methods
In particular aspects, provided herein are methods of modulating CD47 activity with
an anti-CD47 antibody or an antigen-binding fragment thereof described herein.
In specific embodiments, provided herein are s of inhibiting (e.g., partially
inhibiting) a CD47 activity with an anti-CD47 antibody bed herein. In certain
embodiments, provided herein are methods of ng or ng a condition or disorder, such
as cancer, using an anti-CD47 antibody described herein. In certain embodiments, provided
herein are methods of protecting t a condition or disorder, such as cancer, using an anti-
CD47 antibody bed herein.
In particular embodiments, provided herein are methods for managing, ng,
preventing or protecting against , comprising administering to a subject in need f a
therapeutically ive amount of an antibody or an antigen-binding fragment described herein
that binds specifically to CD47 (e. g., human CD47). In certain embodiments, provided herein is
a method of alleviating, inhibiting or reducing the progression or severity of one or more
symptoms associated with .
As used herein, “administer” or “administration” refers to the act of injecting or
otherwise physically delivering a substance (e.g., a humanized anti-CD47 antibody provided
herein or an antigen-binding fragment f) to a subject or a t (e.g., human), such as by
l, topical, intradermal, parenteral, intravenous, subcutaneous, intramuscular delivery
and/or any other method of physical ry described herein or known in the art.
As used herein, the terms “effective amount” or “therapeutically effective amount”
refer to an amount of a y (e.g., an antibody or ceutical composition provided herein)
which is sufficient to reduce and/or ameliorate the severity and/or duration of a given condition,
disorder or disease (e.g, cancer, metastasis, or angiogenesis) and/or a symptom related thereto.
These terms also encompass an amount ary for the reduction, slowing, or amelioration of
the ement or progression of a given disease, reduction, slowing, or amelioration of the
recurrence, development or onset of a given disease, and/or to improve or enhance the
prophylactic or therapeutic effect(s) of another therapy (e.g., a therapy other than an anti-CD47
antibody provided herein). In some embodiments, “effective amount” as used herein also refers
to the amount of an antibody described herein to achieve a specified result.
] As used , the term “in combination” in the context of the administration of
other therapies refers to the use of more than one therapy. The use of the term “in combination”
does not restrict the order in which therapies are stered. The therapies may be
administered, e.g., serially, sequentially, concurrently, or concomitantly.
As used herein, the terms “manage,77 (Cmanaging,” and “management” refer to the
beneficial effects that a subject derives from a therapy (e.g., a prophylactic or therapeutic agent),
which does not result in a cure of a condition associated with CD47. In certain embodiments, a
subject is administered one or more therapies (e.g, lactic or therapeutic agents, such as an
antibody bed herein) to e” a condition or disorder described herein, one or more
symptoms thereof, so as to prevent the progression or worsening of the condition or disorder.
As used herein, the terms “impede” or “impeding” in the context of a ion or
disorder provided herein (e.g., autoimmune disorder, immunological disorder, cancer, or
inflammation) refer to the total or l inhibition (e.g., less than 100%, 95%, 90%, 80%, 70%,
60%, 50%, 40%, 30%, 20%, 10%, or 5%) or blockage of the development, recurrence, onset or
spread of a ion or disorder provided herein (e.g., cancer, metastasis, or angiogenesis)
and/or symptom related thereto, resulting from the administration of a therapy or combination of
therapies ed herein (e.g., a combination of prophylactic or therapeutic agents, such as an
antibody described herein).
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As used herein, the terms “subject” and “patient” are used interchangeably. As used
herein, a subject is a mammal such as a non-primate (e.g, cows, pigs, horses, cats, dogs, goats,
s, rats, mice, etc.) or a primate (e. g., monkey and human), for example a human. In one
ment, the subject is a , e.g., a human, diagnosed with a condition or disorder
ed herein (e.g., cancer, metastasis, or angiogenesis). In another embodiment, the t is
a mammal, e. g., a human, at risk of developing a condition or disorder provided herein (e.g.,
cancer, asis, or angiogenesis). In another embodiment, the t is human.
In certain embodiments, CD47 is amplified in cells of a subject, e.g., the human
subject. Identification of cd47 amplification in a sample from a subject can be performed by
assays known to one of ordinary skill in the art, such as, e.g., quantitative reverse transcription
PCR, immunoblot assays, DNA fingerprinting, karyotyping (for example, by multicolor
fluorescence in situ hybridization (mFISH)), comparative genome hybridization, and gene
sion profiling. As a non-limiting example, protein expression of tumor samples can be
characterized using immunohistochemical assays to measure the amount of CD47 protein present
in a sample.
Identification of mutations or deltions in a sample from a subject can be performed by
assays known to one of ordinary skill in the art, such as, e.g., DNA extraction, generation of
complementary DNA, and cDNA sequencing. The cDNA sequence, for example, can be utilized
to obtain the translation product by methods known to one of ordinary skill in the art. Genetic
deletions and amino acid substitutions can be identified by, for example, comparing the sequence
from the sample from the subject to a a wild type and/or consensus sequence.
In certain embodiments, CD47 is amplified in the subject treated in accordance with
the methods provided . Identification of CD47 amplification in a sample from a subject is
performed by assays known to one of ordinary skill in the art, such as, e.g., quantitative reverse
transcription PCR or blot assays. Identification of mutations or deletions in a sample
from a subject are performed by assays known to one of ordinary skill in the art, such as, e.g.,
DNA extraction, tion of complementary DNA, and cDNA sequencing. The cDNA
sequence, for example, is utilized to obtain the translation product by methods known to one of
ordinary skill in the art. Genetic deletions and amino acid substitutions are identified by, for
example, comparing the ce from the sample from the subject to a a wild type and/or
COHSGHSUSSGQUCHCQ
As used herein, the terms “therapies” and “therapy” can refer to any protocol(s),
method(s), compositions, formulations, and/or agent(s) that can be used in the tion,
treatment, management, or amelioration of a condition or disorder or symptom thereof (e.g., a
condition or disorder provided herein (e.g, cancer) or one or more symptoms or condition
associated ith). In certain embodiments, the terms “therapies” and “therapy” refer to drug
therapy, adjuvant therapy, radiation, surgery, biological therapy, supportive therapy, and/or other
ies useful in ent, management, tion, or amelioration of a condition or er
or one or more symptoms thereof (e.g., cancer or one or more symptoms or condition associated
ith). In certain embodiments, the term “therapy” refers to a therapy other than an anti-
CD47 antibody described herein or pharmaceutical composition thereof. In specific
embodiments, an “additional therapy” and ional ies” refer to a therapy other than a
treatment using an D47 antibody described herein or pharmaceutical composition thereof.
In a specific embodiment, a therapy includes the use of an D47 antibody described herein
as an adjuvant therapy. For example, using an D47 antibody described herein in
conjunction with a drug therapy, biological therapy, surgery, and/or supportive therapy.
As used herein, “hematological cancer” refers to a cancer of the blood, and includes
leukemia, lymphoma and myeloma among others. “Leukemia” refers to a cancer of the blood in
which too many white blood cells that are ineffective in fighting infection are made, thus
crowding out the other parts that make up the blood, such as platelets and red blood cells. It is
understood that cases of leukemia are classified as acute or chronic. Certain forms of leukemia
include, by way of non-limiting example, acute lymphocytic ia (ALL); acute myeloid
leukemia (AML), chronic lymphocytic leukemia (CLL), chronic myelogenous leukemia (CML);
Myeloproliferative disorder/neoplasm (MPDS); and myelodysplasia syndrome. “Lymphoma”
may refer to a n’s lymphoma, both indolent and aggressive non-Hodgkin’s lymphoma,
Burkitt’s lymphoma, and follicular lymphoma (small cell and large cell), among others.
Myeloma may refer to multiple myeloma (MM), giant cell myeloma, chain myeloma, and
light chain or Jones myeloma.
Non-limiting examples of a condition which can be d or managed with an anti-
CD47 antibody described herein include hematological caner and/or solid tumors.
Diseases or disorders related to aberrant CD47 expression, activity and/or signaling
include, by way of non-limiting example, hematological cancer and/or solid tumors.
Hematological cancers include, e.g., leukemia, lymphoma and myeloma. Certain forms of
leukemia include, by way of non—limiting example, acute lymphocytic leukemia (ALL), acute
myeloid leukemia (AML), chronic lymphocytic leukemia (CLL), chronic myelogenous leukemia
(CML), Myeloproliferative disorder/neoplasm (MPDS); and myelodysplasia syndrome. Certain
forms of lymphoma include, by way of non-limiting example, Hodgkin’s lymphoma, both
indolent and aggressive non-Hodgkin’s lymphoma, Burkitt’s lymphoma, and follicular
lymphoma (small cell and large cell). Certain forms of myeloma include, by way of non-limiting
example, multiple myeloma (MM), giant cell myeloma, heavy-chain myeloma, and light chain or
Jones myeloma. Solid tumors include, e.g., breast tumors, ovarian tumors, lung tumors,
pancreatic tumors, prostate tumors, melanoma tumors, ctal tumors, lung tumors, head and
neck tumors, bladder tumors, esophageal tumors, liver tumors, and kidney tumors.
Symptoms associated with cancers and other neoplastic disorders include, for
e, inflammation, fever, general malaise, fever, pain, often localized to the inflamed area,
loss of appetite, weight loss, edema, headache, fatigue, rash, anemia, muscle weakness, muscle
fatigue and abdominal symptoms such as, for example, nal pain, diarrhea or constipation.
In specific aspects, provided herein are anti-CD47 dies useful in treating,
ng the progression of, impeding, preventing relapse of or alleviating a symptom of a cancer
(e.g., MM, Nm, AML, breast , bladder cancer, non-small cell lung cancer/carcinoma,
hepatocellular oma (HCC), a, and head and neck cancer). For example, the CD47
antibodies described herein are useful in treating logical malignancies and/or tumors, e.g.,
hematological ancies and/or . For example, the CD47 dies described herein
are useful in treating CD47+ tumors. By way of miting example, the CD47 antibodies
described herein are useful in treating non-Hodgkin’s lymphoma (NHL), acute lymphocytic
leukemia (ALL), acute myeloid leukemia (AML), chronic cytic leukemia (CLL), chronic
enous leukemia (CML), multiple myeloma (MM), breast cancer, ovarian cancer, head
and neck cancer, bladder cancer, melanoma, colorectal cancer, pancreatic cancer, lung ,
leiomyoma, leiomyosarcoma, glioma, glioblastoma, and so on. Solid tumors include, e.g., breast
tumors, ovarian tumors, lung tumors (e.g., NSCLC), pancreatic tumors, prostate tumors,
melanoma tumors, colorectal tumors, lung tumors, head and neck tumors, bladder tumors,
geal tumors, liver tumors (e.g., hepatocellular carcinoma), sarcoma, and kidney tumors.
In a specific embodiment, provided herein is a method of treating cancer (e.g., a
hematological disorder/cancer or solid cancer) in a subject comprising administering (e.g.,
administering concurrently or sequentially) to a subject in need thereof (i) an anti-CD47
antibody described herein or antigen-binding fragment thereof which cally binds to CD47
such as human CD47, and (ii) another anti-cancer agent. In certain embodiments, the anti-cancer
agent is a chermotherapeutic agent (e.g., microtubule disassembly blocker, antimetabolite,
topisomerase inhibitor, and DNA crosslinker or ng . In certain embodiments, the
anti—cancer agent is a tyrosine kinase inhibitor (e.g., GLEEVEC® (imatinib mesylate) or
SUTENT® (SU11248 or Sunitinib)). Other non-limiting examples of tyrosine kinse inhibitors
include 706 and AMNIO7 (nilotinib). RADOOI, PKC412, ib ATM), erlotinib
(TARCEVA®), sorafenib (NEXAVAR®), pazopanib (VOTRIENTTM), aXitinib, bosutinib,
cediranib (RECENTIN®), SPRYCEL® (dasatinib), lapatinib (TYKERB®), lestaurtinib, neratinib,
nilotinib (TASIGNA®), semaxanib, nib (PALLADIATM), anib (ZACTIMA TM), and
vatalanib.
In a specific , provided herein is a method of treating cancer (e.g, a
hematological disorder/cancer or solid ) in a subject comprising administering (e.g.,
administering concurrently or sequentially) to a subject in need thereof (i) an anti—CD47
antibody described herein or antigen-binding fragment thereof which cally binds to CD47
such as human CD47, and (ii) radiation therapy.
In a particular aspect, provided herein is a method of promoting (e.g., inducing or
increasing) phagocytosis, e. g., macrophage mediated phagocytic killing of tumor cells,
comprising contacting an effective amount of an anti-CD47 antibody described herein which
specifically binds to human CD47 with tumor cells. Also provided herein is a method of
promoting (e.g., inducing or increasing) phagocytosis, e.g., macrophage ed phagocytic
killing of tumor cells, in a t in need thereof (e.g., a subject with tumor cells, such as tumor
cells expressing CD47), comprising stering to the subject an effective amount of an anti-
CD47 antibody described herein which cally binds to human CD47.
In a particular aspect, provided herein is a method of reducing tumor volumn,
comprising contacting an effective amount of an anti-CD47 antibody described herein which
specifically binds to human CD47 with the tumor. Also provided herein is a method of reducing
tumor volumn in a t in need thereof (e.g., a subject with a tumor, such as a CD47
sing tumor), comprising administering to the subject an effective amount of an anti-CD47
antibody described herein which specifically binds to human CD47.
In a particular aspect, provided herein is a method of inhibiting cancer cell growth or
proliferation, comprising contacting an ive amount of an anti—CD47 antibody described
herein which specifically binds to human CD47 with cancer cells. Also provided herein is a
method of inhibiting cancer cell growth or proliferation in a subject in need thereof (e. g., a
subject with cancer cells, such as CD47 expressing cancer cells), comprising administering to the
subject an effective amount of an D47 antibody described herein which specifically binds
to human CD47.
.4.1 Diagnostic Uses
In one aspect, anti-CD47 antibodies bed herein and antigen-binding nts
thereof, which specifically bind to an ECD of human CD47 can be used for stic purposes
to detect, diagnose, or monitor a ion described herein (e.g., a ion involving CD47
and/or abnormal CD47 signaling and/or abnormal CD47 expression), such as cancer (e.g.,
colorectal cancer, gastric cancer, lung cancer, or melanoma). In specific embodiments, anti-
CD47 antibodies described herein or an antigen-binding fragment thereof for use in diagnostic
purposes are labeled. Methods provided herein for diagnostic purposes to detect, diagnose, or
monitor a condition described herein can be in vitro methods, in situ methods, or ex vivo
methods. Methods provided herein for diagnostic purposes to detect, diagnose, or monitor a
condition described herein can be in viva methods.
] In certain embodiments, provided herein are methods for the detection of a condition
described herein, such as cancer, comprising: (a) assaying the expression of CD47 in a sample
of a subject using one or more dies described herein or an antigen-binding fragment
thereof; and (b) comparing the level of CD47 expression with a control level, e.g., levels in
normal tissue samples (e.g., from a t not having a condition described , or from the
same patient before onset of the condition), whereby an increase or decrease in the assayed level
of CD47 expression compared to the control level of CD47 expression is indicative of a
condition described .
In certain embodiments, provided herein are s for the detection of cancer
expressing CD47 (e.g., overexpressing CD47), comprising: (a) assaying the expression of CD47
in a sample of a subject using one or more antibodies described herein or an n-binding
fragment thereof; and (b) comparing the level of CD47 expression with a control level, e.g.,
levels in normal samples (e.g., from a t not having cancer, a t having cancer that does
not overexpress CD47, or from the same patient before onset of cancer). In specific s, an
increase or decrease in the assayed level of CD47 sion compared to a control level of
CD47 expression is indicative of cancer expressing CD47.
In a specific embodiment, provided herein is a method of diagnosing a CD47-
expressing cancer in a patient, wherein the method comprises the steps of:
(a) contacting a biological sample from the patient with one or more antibodies described herein
or an antigen—binding nt thereof;
(b) detecting binding of the dy or antigen-binding fragment to CD47 to determine a CD47
protein level in the biological sample from the patient; and
(c) comparing the CD47 protein level with a standard CD47 protein level.
In a specific embodiment, provided herein is a method of ring CD47 protein
level during ent of a CD47—expressing cancer in a patient, wherein the method ses
the steps of:
(a) contacting a biological sample from the patient with one or more antibodies described
herein or an antigen-binding fragment thereof,
(b) detecting binding of the antibody or antigen-binding fragment to CD47 to determine
a CD47 protein level in the biological sample from the patient, and
(c) comparing the CD47 protein level with a standard CD47 protein level.
Any sample (e.g., bodily fluid or tissue sample) from a subject can be used in
diagnostic methods provided herein. Non-limiting examples of samples which can be used in
diagnostic methods ed herein include, serum sample, plasma sample, tissue , urine
sample, tumor sample, and stool sample.
Antibodies described herein can be used to assay CD47 levels in a biological sample
using classical immunohistological methods as described herein or as known to those of skill in
the art (e.g., see Jalkanen el al., 1985, J. Cell. Biol. 101:976-985; and Jalkanen et al., 1987, J.
Cell . Biol. 105:3087-3096). Other antibody-based methods useful for detecting protein gene
expression include immunoassays, such as the enzyme linked immunosorbent assay (ELISA) and
the radioimmunoassay (RIA). Suitable antibody assay labels are known in the art and include
enzyme labels, such as, glucose oxidase; radioisotopes, such as iodine (1251, 1211), carbon (14C),
sulfur (35$), tritium (3H), indium (1211n), and technetium (99Tc); luminescent labels, such as
luminol; and fluorescent labels, such as fluorescein and rhodamine, and biotin.
In one embodiment, monitoring of a condition described herein (e.g., a condition
ing CD47 and/or abnormal CD47 signaling and/or abnormal CD47 expression), such as
, is d out by repeating the method for diagnosing for a period of time after initial
sis.
Presence of the labeled le can be detected in the subject using methods known
in the art for in vivo scanning. Skilled artisans will be able to determine the appropriate method
for detecting a particular label. Methods and devices that may be used in the stic methods
of the invention include, but are not limited to, computed tomography (CT), whole body scan
such as on emission aphy (PET), magnetic resonance imaging (MRI), and
sonography.
6. EXAMPLES
The examples in this section (1'. e., Section 6) are offered by way of illustration, and
not by way of limitation.
6.1 Example 1: Cell-Free (CF) Antibody Production
Uneff1cient assembly of the heavy and light chains of anti-CD47 antibody AB6. 12
has been observed when co-expressed in the cell—free (CF) system. One approach to improve
this process e pre-addition of folded light chain into a heavy chain reaction. In another
approach, heavy chain framework sequence ation surprisingly resulted in more efficient
assembly and co-expression of the heavy and light chains of anti-CD47 antibodies in the CF
system. Characterization of these anti-CD47 dies with heavy chain framework sequence
modifications are described in more detail below.
Small-Scale Production
ree extracts with over-expression ofDst (2X Dst) were thawed to room
ature and incubated with 50 uM iodoacetamide for 30 min. Cell-free reactions were run at
°C for up to 10 hours containing 30% (v/v) iodoacetamide-treated extract with 8 mM
magnesium glutamate, 10 mM ammonium glutamate, 130 mM potassium glutamate, 35 mM
sodium pyruvate, 1.2 mM AMP, 0.86 mM each of GMP, UMP, and CMP, 2 mM amino acids for
all 19 amino acids except ne which was added at 0.5 mM, 4 mM sodium e, 1 mM
putrescine, 1.5 mM dine, 15 mM potassium phosphate,100 nM T7 RNAP, and 2 mM
oxidized (GS SG) glutathione. The concentrations of heavy chain plasmid and light chain plasmid
in the reactions were 7.5 ug/mL and 2.5 ug/mL tively. To label synthesized protein with
14C, 3.33% (v/v) l-[U-14C]-leucine (300 mCi/mmole, GE Life Sciences, Piscataway, NJ) was
added to the reaction as well. In this experiment, the following heavy chains (HCs) paired with
the same light chain (LC), SEQ ID NO: 13, were expressed.
SEQ 1])
sample # lgfi HC Description NO: Antibody name
1 IgGl parental 2 IgGl -parental
2 IgGl 5 mutations 7 IgGl-5m
3 IgGl 13 mutations 5 IgG1-13m
IgGl Z allotype 13 mutations Z allotype 6 IgG1-13mZ
4 or 13 + 2 mutations
IgG4P Parental 3 IgG4P—parental
6 IgG4P 5 ons 9 IgG4P-5m
7 IgG4P 13 mutations 8 IgG4P-13m
8 IgG4PE Parental 4 IgG4PE-parental
9 IgG4PE 5 mutations 11 IgG4PE-5m
IgG4PE 13 mutations 10 IgG4PE—13m
] Exemplary nucleotide sequences encoding the above heavy chain sequences are
provided at SEQ ID Nos. 23, 26, 27, 24, 28, 29, 25, 32 and 31, respectively.
For ducing SDS-PAGE, 4 uL of sample, 8 uL of deionized water (DI H20) and
4 uL of 4X LDS buffer (Invitrogen, ad, CA) were mixed before being loaded on gel. For
reducing gel, 4 uL of sample, 1 uL of 1 M DTT, 7 uL of DI H20 and 4 uL of 4X LDS buffer
(Invitrogen, Carlsbad, CA) were mixed and heated in hot blot at 70°C for 5 minutes. Samples
were analyzed by 4~12% Bis-Tris SDS—PAGE gels (Invitrogen, Carlsbad, CA) according to the
manufacturer’s recommendations. Gels were dried and analyzed by autoradiography using a
Storm 840 oImager after about 16 hours exposure. The autoradiography is shown in
Figure 1A.
The data indicate that the CF expression titers of IgG1, IgG4P and IgG4PE were each
dramatically improved by engineering the 5 mutations and the 13 mutations on their HC
sequences. The titers are reported in Figure 1B.
Scale—Up Production — IgGl variants
Scale—up CF production of IgG1 variant antibodies, such as IgG1-5m and IgG1-13mZ,
and purification were carried out. The up conditions are described in more details in the
Tables (e.g., Tables 3-6) below. Both variants were made with essentially the same method; the
most cant difference was in reaction temperature. IgGl-5m was expressed at 25°C and
IgG1-13mZ was run at 30°C. IgG1-13mZ showed similar results at 25°C and 30°C, but IgGl-
5m showed higher titer at 25°C versus 30°C. The slight differences in reaction timing between
the two variants are simply the result of scheduling convenience and not likely to have any
cant impact on the process. Different extracts were used for the ts based on extract
availability, not on specific extract requirements. Any t with over-expression ofDst
would be expected to work similarly for these products.
IgG1-13mZ (IgGl, VHl-18 framework, l3+2 mutations) Scale-up Expression:
S30 cell-free extract was d with 50 uM iodoacetamide (1AM) for 30 minutes at
room temperature. After this treatment, the extract was combined with the reagents in Table 3
and erred to a bioreactor (Dci-BioLafitte Evo Bioreactor, 10L maximum working volume).
The bioreactor controls were configured as listed in Table 4. After 6 hours of reaction, an
additional 5 mM (final concentration) ed glutathione was added to the reaction. The
oxidized glutathione was prepared as a 250 mM stock solution with the pH adjusted to between 7
and 8 before on to the reactor. The on was run for a total of 15 hours before
transferring to downstream sing.
Table 3 - Cell-free reaction components
Final Concentration in CF
Rea_ent reaction
AMP 1.2 mM
GM 0.86 mM
UMP 0.86 mM
CM 0.86 mM
Sodium oohoshate 15 mM
19 amino acids excludin_ t rosine 2 mM each
Oxalic Acid 4 mM
Putrescine 1 mM
Soermidine 1.5 mM
Ammonium _lutamate 10 mM
Potassium _lutamate 130 mM
Ma_nesium _lutamate 8 mM
2015/067642
P ruvate 35 mM
Oxidized lutathione 2 mM
Bacterioo_hae T7 RNA 01 merase 0.02 _/L
d ng li ht chain '
Plasmid encoding heaV chain .rotein 7.5 m_/L
Pluronic—R 31R1 0.005% V/V
IAM treated extract from E. coli strain 30% (V/V)
SBDG028
Table 4 - Bioreactor control settings (5L reaction volume)
Parameter Setpoint
Temperature 30°C
”C3 no l
Air flow (sparger) 1.5 SLPM
100% air tion
ion 200-400 RPM as needed for DO control (primary DO
cascade
Oxygen flow 0-2 SLPM as needed for DO control (secondary DO
s o ar_er cascade
Anti-CD47 antibody IgG1-5m (IgGl, VH1-18 ork, 5 mutations) Scale-up Expression:
S30 cell-free extract was treated with 50 uM iodoacetamide (1AM) for 30 minutes at
room temperature. After this treatment, the extract was combined with the reagents in Table 5
and transferred to a bioreactor rius Biostat Q Bioreactor, 500 mL maximum working
volume). The bioreactor controls were configured as listed in Table 6. After 5.5 hours of
reaction, an additional 5 mM (final concentration) oxidized glutathione was added to the reaction.
The oxidized glutathione was prepared as a 250 mM stock solution with the pH adjusted to
between 7 and 8 before addition to the reactor. The reaction was run for a total of 15.7 hours
before transferring to downstream processing.
Table 5 - Cell-free reaction components
Final Concentration in CF
Rea_ent reaction
0.86 mM
086 mM
Sodium oohoshate 15 mM
Bacterioo_hae T7 RNA .01 merase 0.02 _/L
Plasmid encoding li_ht chain '
Plasmid encodin- heaV chain rotein 7.5 m_/L
1AM treated extract from E. coli strain 30% (V/V)
SBDG03 1
Table 6 - Bioreactor control settings (0.5L reaction volume)
|il||||||il||||||||Parameter Setpoint
Temperature 25°C
'U no control
Air flow (sparger) 0.25 SLPM
80% air saturation
Agitation 0 RPM as needed for DO control (primary DO
cascade
Oxygen flow 0-1 SLPM as needed for DO control (secondary DO
s o arer cascade
6.2 Example 2: e Analysis of CD47 Binding
Material and Methods:
Immobilization: Anti-human Fc (AHC) surfaces were ed by amine-coupling
monoclonal mouse anti—human Fc IgG (included in the e Human Antibody Capture Kit,
GE Life Sciences Cat # BR39) to a Biacore CM5 sensor chip e. The running buffer
for the immobilization procedure for the immobilization procedure was HBS-EP+ (10 mM
HEPES, 150 mM NaCl, 3 mM EDTA, 0.05% V/V P-2O as surfactant). The following was
2015/067642
performed in all four flow cells to prepare surfaces amine-coupled anti-human Fc IgG. The CM5
chip surface was activated by injecting a 1:1 (v/v) mixture of 400 mM EDC and 100 mM NHS
for 7 minutes at 10 uL/min. Following this treatment, anti-human IgG was diluted to 25 ug/mL
in 10 mM sodium acetate buffer pH 5.0, and injected over all the flow cells at 10 uL/min for 7
minutes. Then, Ethanolamine was injected at 10 uL/min for 7 minutes to block all the surfaces.
This procedure resulted in immobilization levels of ~10,000 — 11,000 RU on the sensor chip.
] Kinetic Assays: For kinetic assays anti-CD47 antibodies were ed onto the anti-
human Fc surfaces (surface preparation bed above). For e of the antibodies with
human Fc, the antibodies were diluted to 10 ug/mL in HBS—EP+ running buffer. The antibody
variants were immobilized by flowing over flow cell 2, 3 or 4 at a flow rate of 10 uL/min for 12
seconds. The analyte (human CD47 n) was diluted into running buffer to prepare a serial
dilution series created with a 2-fold dilution factor to give concentrations of3. 125, 6.25, 12.5, 25
and 50 nM. After anti-CD47 antibody capture, the CD47 analyte was injected over the flow cells
for 180 seconds (3 minutes) at 50 uL/min, and complex dissociation was monitored for 900
seconds (15 minutes). Buffer blanks were also run, and were used to reference the analyte
binding data before fitting. Anti-human Fc surfaces were regenerated with two ond
injections of 3M MgClz at 30 uL/min between each analyte binding cycle.
Kinetic data analysis: mental data for a given antibody — antigen ction
were fit using the 1:1 binding model, using global Rmax, global ka (association), global kd
(dissociation) parameters, and constant RI (bulk refractive index) parameters. Fraction activity
(% ligand activity) was determinined using the following a to calculate the relationship
n the theoretical Rmax (Rmax Theo) and the experimental Rmax (Rmax exp). In the formula,
stoichiometry represents the instances of interaction between dy and antigen, for instance,
when the dy is the ligand, each of the antibody arms can interact with antigen, thus the
stoichiometry is 2.
MW mméfies‘
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Results: Biacore analysis showed that all three anti-CD47 antibody variants with 5
mutations (regardless of isotype) have similar off—rate and affinity, with fraction activity (%
ligand activity) around 38%. Also, y for the antibody variants with 5 mutations agrees well
with theparental antibody. The data is summarized in the table (Table 7) below.
Table 7: Biacore results summary
CD47 IgG1— 636E+05 2.60E-03 4.09E-09 1234 1.83 37.4
PGRTV—
CD47 IgG4P—5m 7.04E+05 2.54E-03 09 106.5 1.86 38.2
5Mutations
CD47 IgG4PE—5m 5.94E+05 2.54E-03 4.27E-09 115.4 2.5 39.2
Control Anti-CD47 CF
CD47 7.32E+05 2.31E-03 3.16E-09 99.68 1.36 39.4
Antibody Control
The data for the D47 antibody variants 13m (with 13 mutations) and l3mZ
(with 13 mutations and IgG1 Z allotype) displayed a very fast off-rate, and is of the kinetic
parameters did not result in a reliable fit based on the 1:1 g model.
Figures 2A-2E depict individual sensorgrams for dy variants m (Figure
2A), IgGl-l3m (Figure 2B), IgGl-l3mZ (Figure 2C), IgG4P-5m (Figure 2D), and IgG4PE-5m
(Figure 2E), and Figure 2F depicts a sensorgram for anti-CD47 control antibody.
6.3 Example 3: Direct CD47 Cell Binding Assay
To obtain binding curves, sample variants were titrated 1:2 in FACS buffer (PBS 2%
FCS) starting from a high concentration of ~66 nM for each sample. 0.1 x 106 CCRF-EM cells
were plated in a 96 well plate and incubated in 50 ul FACS buffer containing the indicated
concentration of sample ts for 1 hour in ice. Cells were then washed with 150 pl FACS
buffer and incubated in 50 ul FACS buffer containing the secondary antibody human-IgG—
PE, Jackson ImmunoResearch) diluted 1:100, for 1hr in ice. Cells were then washed with FACS
buffer and fixed in 2% PFA for acquisition with LSR 11, DB flow cytometer (BD Biosciences,
San Jose, CA). Flow try analysis was med using FloJo software Version 9.6.4. To
obtain titration curves and Kd, Mean Fluorescence Intensity (MFI) values were plotted against
concentration (nM). Kd values were ated using Prism 6, Non linear regression curve fit
analysis, One Site Specific Binding with Hill Slope.
Results: All CH0 and CF anti-CD47 monoclonal antibodies showed equivalent
binding Kd on surface of CCRF—CEM cells, which are human T lymphoblast cells (ATCC®
9TM). The calculated Kd (nM) values are presented in the table below (Table 8).
Table 8:
6.4 Example 4: Phagocytosis assay
tion of human macrophages: Human peripheral blood mononuclear cells
(PBMCs) were isolated from buffy coats (white layer between red blood cells and plasma in a
unit of whole blood after it has been spun down in a centrifuge) purchased from the Stanford
Blood Center (Palo Alto, CA, USA). Buffy coats were diluted with PBS 2-fold and layered over
ml NycoPrep 1.077 (Axis-Shield, , Scotland) in 50 ml Leucosep tubes (Greiner Bio
One, Monroe, NC, USA) and centrifuged at 1,000 X g for 20 minutes. PBMCs were ted
from the interface, washed with 35 ml PBS and centrifuged at 250 X g for 5 minutes.
inating red blood cells were lysed with 10 ml ACK Lysing Buffer (Lonza, Allendale, NJ,
USA) for 2 min and cells were diluted with 40 ml PBS and passed through a 40 um cell strainer
(BD Biosciences, San Jose, CA, USA). Cells were centrifuged at 250 X g for 5 mins and
resuspended in 30 ml RPMI media containing 10% FB S, 2 mM glutamine and penicillinstreptomycin.
PBMCs were counted and cultured at 5X106 cells/ml in RPMI media overnight.
The next day, CD14-positive monocytes were isolated with CD14 microbeads {Miltenyi Biotech,
Auburn, CA, USA) using the cs Pro and cultured in RPMI media containing 5.0 ng/ml
SF (Pepretech, Rocky Hill, NJ, USA) for 5“? days to obtain differentiated macrophages.
Cells were frozen down in Recovery Cell e ng Medium (Life Technologies, Grand
, NY? USA).
Measurement of Phagocytosis Activity: Frozen er tresh human macrophages were
cultured overnight in 96—well (20,000 cells in Oil nil RPMI media supplemented with 50 rig/ml
M—CSF). The next day, rnedia was exchanged fer 50 ill RPMI nredia without M—CSP after one
wash. CD47~pnsitive CCRF—CEM cells (ATCC, Manassas, VA, USA), passaged under l5xl06
cells/nil y, were laheled with 10 nM Cell’l‘race Oregon Green 488 {Life 'l'eehnolngies,
Grand lsl and, NY, USA) for '30 minutes and washed 3x with RPMI niedia. Labeled CCRECEM
cells (80,000 cells in 50 til) and anti—CD47 antibodies in 50 ill RPMI media were added to
macrophages, AntinCDll’i antibodies were tested at a final enneentratinn (it‘d rig/ml tn l0 ltg/l‘lll.
Plates were briefly centrifiiged and ted at 370C for 3' hours. Macrophages were washed 3;»;
with PBS to ve CCRF—CEM cells and detached with 50 ill se (BD Biosciences, San
Jose, CA, USA) at. 370C for 10 minutes. Maerenhages were collected, washed once with FACES
wash buffer (PBS containing 0.20/25 FBS) and stained with antiuCl'JH—APC fer 15 . Cells
were washed twice and fixed in 4% paraforrnaldehyde for it) minutes. Cells were analyzed by
flew eyternetry t0 determine the phagocytic index (9/6 Off CUM—positive cells that are Oregon
Green labeled) Data was analyzed using GraphPad Prism to obtain dese~respense curves and
half maximal effective concentration (Eng) values using the variable slope (4 parameters) non»
linear regressinn analysis.
Results: Phagocytosis activity was Observed for all IgGl variants (CF and can), and
lgG4P and ingPE from CHO enly. ECso values are presented in the table below (Table 9).
Table 9:
-Anti—CD47 variants new (nit/r)
lgGl lgG l ~parental~CllO 0‘3
lgG 1 ~paren tal~CF 0. 5
lgGl~5m~CF (R&D) 0.6
lgGl~5m~CF (PD) 0.3
lgG-“ll’ lngP—parental—CHQ 0. 5
lgG‘lP—parental —Cl'*‘ nd
lgG‘lP—Sin—CF nd
lgCrélPEparentalCHO
TgG49Eparental—CP _
6.5 Example 5: Hemagglutination Assay
Published studies suggest that some anti-CD47 antibodies may cause
hemagglutination of human red blood cells (RBCs). ore, hemagglutination assays were
carried out to characterize anti-CD47 antibodies y to promote agglutination of RBCs.
Human RBCs were sourced from tive Research (Cat# IPLA-WB3). Human
RBCs (2 mLs) were washed in 10 mLs of 1X dPBS (pH 7.4) and centrifuged for 10 minutes at
500g (1500rpm). The supernatant was aspirated, and human RBCs were washed twice,
resuspended in 8 mL 1 x dPBS for a 20% solution of RBCs. Dilution for the Anti-Human RBC
(Rabbit) antibody (Rockland Immunochemicals Inc., Catalog #109—4139, Lot 27233), positive
control, was 1:64 with 1:3 serial dilutions (10X). The starting concentration for the samples was
1000 nM with 1:3 serial dilutions (10X). Each antibody ion were pipette (50 uL) to all wells
of a U-bottom 96well plate. RBC solution (SOuL of 20% RBC solution) was added to all wells
of the plate, and the plate was incubated at 37°C for at least 1.5 hours to 12 hours (Note: there is
no visual difference in the s between 1.5 and overnight). Anti-Human RBC (Rabbit)
dy and MCA911 (Mouse Anti-Human CD47 (clone BRIC 126, Abnova)) served as
positive controls. Assays were visualized from the top of the plate. Negative (non—
lutination) results appear as intact red dots, while positive (hemagglutination) s
appear as a dispersed red mat.
Results: Only positive controls (rabbit anti-human RBC antibody and MCA911
(mouse anti-human CD47 antibody)) showed hemagglutination. No CH0 and cell free (CF)-
expressed anti-CD47 monoclonal antibodies, ing IgGl-parental, IgG4P-parental, IgG4PE-
al, IgG1—13mZ—CF, IgG1-13m-CF, IgGl-Sm-CF, IgG4P—5m-CF, IgG4PE-5m-CF, show
evidence of hemagglutination.
6.6 Example 6: C1Q Binding ELISA
: 96-well high protein binding ELISA plates (MaXSorp Nunc) were coated
overnight at 4°C with sample anti-CD47 antibody variants diluted in 0.05 M Sodium Bicarbonate
Buffer (pH 9). Samples were diluted at a high concentration of 133.4 nM (20ug/ml) and ed
1:2 in an 11-point dilution curve. Plates were washed three times in PBS, 0.05% Tween 20 and
blocked for 1 hour at room temperature with ELISA Diluent (0.1 M NAPO4, 0.1 M NaCl, 0.1%
gelatin, 0.05% Tween 20, 0.05% ProClin300). Plates were then washed again three times and
incubated for two hours at room temperature with 2 ug/mL human Clq (AbD Serotec 2221-5504,
1mg/mL stock) diluted in ELISA Diluent. Plates were then washed three times and incubated
with sheep anti-human Clq HRP (AbD c 2221-5004P) diluted 1:200 in ELISA Diluent for
1 hour at room temperature to detect bound Clq. Plates were then washed three times, then 100
uL of T1Vfl3 on was added. Reaction was quenched by adding 100 pl of 1M Phosphoric
Acid and plate was read at 450 nM. Data are plotted using Prism6 as non-linear regression with
log (inhibitor) vs. se —Variable slope (four parameters).
Results: IgGl-QNl-CHO shows activity in the ClQ ELISA assay,while IgG4P,
IgG4PE, and scFv anti-CD47 monoclonal antibodies do not show activity (“NA”) in ClQ ELISA
assay. EC50 values are ted in the table below (Table 10).
Table 10:
Sample
IgGl -parental-CHO
IgGl tal—CF
IgG1-13mZ-CF
IgG1-13m-CF
IgGl -5m-CF
IgG4P-parental-CHO
IgG4P-parental—CF
IgG4P—5m-CF
Anti-CD47 B6H12 scFv
IgG4PE-parental-CHO
IgG4PE-parental-CF
IgG4PE-5m-CF
6.7 Example 7: Complement-Dependent Cytotoxicity (CDC) Assay
Methods: CD47-expressing cell lines (Raji and/or CCRF) were harvested and re—
suspended in CDC buffer (RPMI 1640, L-glutamine (100x stock), and 1% BSA) at 0.3 n
cells per mL. Cells were then plated at 10,000 cells per well in a 96 well white tissue culture
plate (Falcon) and incubated with sample anti-CD47 antibody variants at a final concentration of
ug/mL in CDC buffer at 37°C for 1 hour. Spin filters (Costar SpinX microcentrifuge tubes)
were used to remove residual contaminants. Rabbit (7.5%) or human (3 0%) serum were then
added at a final tration of 2.5% and 10%, respectively and incubate for 2 hours at 37°C.
Sera were diluted in CDC assay . Cell death was then measured using the Cell Tox Glo kit
(Promega G292) and following the manufacturer’s instructions. Plates were read on Envision
luminescent plate reader (Luminescent 96 well full area program) and processed percent CDC
activity as (Treated Cells-Spontaneous Cells)/(Total Lysis-Spontaneous Lysis)* 100.
s: CDC activity was observed in Bn'c 126 antibodies, anti—CD20 IgG1
antibodies and anti-CD20 IgG4 antibodies, while CDC activity was not observed (“NA”) in any
other antibodies tested. ECso values are presented in the table below (Table 11).
Table 11:
Name
CD20 IgG1
BRIC 126 (anti-CD47 dy)
B6H12 (anti-CD47 antibody)
IgG1-parental-CHO
parental—CHO
IgG4PE-parental-CHO
IgG1-parental-CF
IgG1-5m-CF
IgG1-13m-CF
IgG1-13mZ-CF
IgG4P—parental—CF
IgG4P-5m-CF
Control IgG1 Isotype
WO 09415
6.8 e 8: Antibody-Dependent Cytotoxicity (ADCC) Assay
Methods: PBC were prepared from buffy coats. Buffy coats were diluted with PBS 2-
fold and layered over 15 ml NycoPrep 1.077 (Axis-Shield, Dundee, nd) in 50 ml Leucosep
tubes (Greiner Bio One, Monroe, NC, USA) and centrifuged at 1,000 x g for 20 minutes. PBMCs
were collected from the interface and washed with 35 ml PBS and centrifuged at 250 x g for 5
minutes. Contaminating red blood cells were lysed with 10 ml ACK Lysing Buffer (Lonza,
Allendale, NJ, USA) for 2 minutes and cells were diluted with 40 ml PBS and passed through a
40 um cell strainer (BD Biosciences, San Jose, CA, USA). Cells were centrifuged at 250 x g for
minutes and resuspended in 30 ml RPMI media containing 10% PB S, 2 mM glutamine and
penicillin-streptomycin. 10,000 CCRF-CEM or SKBR3 cells were co-cultured with 300,000
PBMCs per each well in a 96 well U bottom opylene plate. PBMC were prepared from
human buffy coats ed from Stanford blood center Three-fold dilutions of the sample
variants were added to each well in duplicates, starting from a highest tration of 222 nM
and incubated in 37°C for 3 hours. Cells were then lysed in 50 uL of Glo reagent following
manufacturer’s instructions. Plates were read on Envision luminescent plate reader (Luminescent
96 well full area program). Percent ADCC activity was calculated as (Treated Cells-Spontaneous
Cells)/(Tota1 Lysis-Spontaneous Lysis)* 100.
] Results: ADCC activity was observed in Trastuzumab (CH0) and IgG1 parental-
CHO, both expressed in CHO cells, while ADCC activity was not observed (“NA”) in any other
anti-CD47 antibody (CHO cell expression or CF expression) tested. ECso values are presented in
the table below (Table 12).
Table 12:
Antibody Name IC50 (nM)
Trastuzumab (CHO) 0.001
IgG4P-parental—CHO
IgG4PE—parental—CHO
Control IgG4 Isotype
IgGl-parental-CF
m-CF
IgG 1 - 1 3m-CF
IgGl- l 3mZ-CF
IgG4P-parental-CF
IgG4P-5m-CF
IgG4PE—parental—CF
IgG4PE-5m-CF
6.9 Example 9: Differential Scanning Calorimetry (DSC) (Thermostability)
Analysis
Method: Differential Scanning Calorimetry (DSC) was performed on a GE VP
Capillary DSC ment. Analysis was performed from 20-100°C with 60°C/hr heating ramps.
Feedback mode was disabled, and a filtering period of 105 was utilized. Pre-scan thermostating
was set to 5 minutes. All samples were tested at a concentration of 1mg/mL in the following
buffer: SOmM L-histidine, lSOmM NaCl, 2% trehalose, pH 6.0
s: Three different anti-CD47 IgGl antibody constructs were analyzed by DSC:
1) IgGl-l3mZ
2) IgGl-l3m
3) IgGl-Sm
In particular, the melting transition of the Fab domain (TM2) was of interest, given
that the three antibodies differed only in residues d in the Fab domain. As the data shows in
Figure 3A, good ative unfolding is observed for the Fab transition for all three ucts,
with IgGl-Sm exhibiting the highest TM2.
The table below (Table 13) summarizes the transition temperatures of the three
different transitions for all three anti-CD47 IgGl constructs. As can be observed, only minor
(<1.0°C) TM differences can be ed for the CH2 (TMl) and CH3 (TM3) transitions. The
TM2 of IgGl-Sm, however, does show a 15°C stabilization over the other variants.
Table 13
In particular, the IgGl-Sm exhibits strikingly improved thermal stability when
compared against CHO cell-culture derived IgG4PE (CHO ) reference standard e
3B). As can be observed, all thermal tions for the CH0 IgG4PE material lie below 75°C,
while the IgGl-Sm is significantly stabilized and denatures at higher temperatures, with the
exception of the CH2 domain at 622°C.
To see whether the thermal stabilization observed in the IgGl context would also
translate to the IgG4 scaffold, the following three anti-CD47 IgG4 variants were compared Via
DSC:
1) IgG4PE-5m
2) IgG4P-5m
3) IgG4PE CHO
] As can be seen in the thermogram presented in Figure 3C, Fab region melting in the
IgG4P and IgG4PE context is ed by 9°C, by introduction of the 5-mutations, when
compared to IgG4PE CHO reference material.
Altogether, these results show that significant thermal stabilization of the Fab domain
can be achieved by the introduction of select mutations. As the Fab region remains unchanged
between IgG1 and IgG4 scaffolds, the thermal stability gains seem to translate from one scaffold
to r, indicating that this should also hold true for other IgGl isotypes.
6.10 Example 10: The cokinetics ties of anti-CD47 antibodies
Methods: The anti-CD47 antibodies IgG4-PE CHO, IgGl-CF and IgGl-Sm-CF were
administered by bolus intravenous injection to mice at dose levels of 3.0, 3.0 and 2.5 mg/kg,
respectively, Plasma samples were collectd at selected times out to 28 days (672 hours) after
, and the concentration of the respective protein determined by eimmunoassay. The
pharmacokinetic parameters were then calculated using a non-compartmental approach with
WinNonlin ‘v’ 5.3, Phoenix 64 (Certara, CA). The AUC was calculated using the linear
trapezoidal rule for the ascending portion of the curve and the log trapezoidal rule for the
descending portion. The al half-life was determined from a regression of the log of the
plasma concentration versus time. The number of points used for the regression was determined
by visual inspection of the data using a minimum of three terminal time points. The initial
volume of distribution was calculated from the dose/plasma concentration extrapolated to zero
time. All other parameters were calculated within WinNonlin using standard s.
] Results: The pharmacokinetics of IgG4—PE CHO, IgGl-CF and IgGl-Sm-CF were
similar to each other. The clearances are low ing in vely long half-lives despite the
volumes of distribution also being low, l for these types of compounds. The initial
volume of distribution approximated blood volume whereas the volumes of distribution based on
area and at steady-state were approximately half that of extracellular water.
c0 Auc.ast AUC... Terminal Cl InitiaIV V. vs.
(Mg/mL) (ug*h/mL) (ug*h/mL) t1/z(h) (mL/h/kg) (mL/kg) (mL/kg) (mL/kg)
10063 11391 218.8 0.26 39.40627873 83.2 80
7009 7368 165 0.41 46.22496148 96.9 100.8
7021 7789 193.1 0.32 51.2295082 89.4 92.4
6.11 Example 11: In Vivo umor Activity
The anti-tumor activity of anti-CD47 antibodies produced by the cell-free system
were tested in vivo using a xenograft tumor model with the human myeloma cell line RPM18226.
Methods: NOD/SCID mice were injected aneously with RPMI 8226 cells.
Subsequently, mice were treated with vehicle control, hIgG4, or CF D47 antibodies, such
as anti-CD47 IgGl-Sm, were administered (qwx3) at a dose of 1 mg/kg, 03 mg/kg, or 0.1 mg/kg.
Tumor volume were monitored.
Results: Figure 5 s a graph of tumor volume versus days after tumor cell
inoculation. CF anti-CD47 IgGl—Sm antibody achieved tumor volume reduction (TVR) of 83%
at a dose of 1 mg/kg and a TVR of 50% at a dose of 0.3 mg/kg. The tage of tumor free
mice at termination is 25% (2/8) for the 1 mg/kg dose of CF anti—CD47 IgGl-Sm antibody.
WO 09415
All references (e.g., publications or patents or patent applications) cited herein are
incorporated herein by reference in their entirety and for all purposes to the same extent as if
each individual reference (e.g., publication or patent or patent application) was specifically and
individually indicated to be incorporated by reference in its entirety for all purposes.
] Other embodiments are within the following claims.
Claims (18)
1. A monoclonal anti-CD47 antibody which specifically binds to human CD47, wherein the anti-CD47 antibody, when ed using a cell-free system, has a higher antibody expression titer or yield compared to a parental antibody ed using the cell-free system.
2. The anti-CD47 antibody of claim 1, wherein the antibody expression titer or yield is higher by at least 1 fold, at least 2 fold, or at least 3 fold compared to the parental antibody.
3. The anti-CD47 antibody of claim 1, which is a humanized antibody.
4. The anti-CD47 dy of claim 1, which is an IgGl antibody.
5. The anti-CD47 antibody of claim 1, which is an IgG4 antibody.
6. The D47 antibody of claim 1, which is an IgG4 antibody comprising a S228P amino acid substitution according to the EU numbering index.
7. The anti-CD47 antibody of claim 1, which is an IgG4 antibody comprising a $228P and L235E amino acid tutions according to the EU ing index.
8. The anti-CD47 antibody of any one of claims 1-7, wherein the parental antibody ses a heavy chain variable region comprising the amino acid sequence of SEQ IDNO: l.
9. The anti-CD47 antibody of claim 8, wherein the parental antibody comprises a light chain variable region comprising the amino acid sequence of SEQ ID NO: 124
10. The anti-CD47 antibody of claim 1, wherein the parental antibody comprises a heavy chain comprising the amino acid sequence of SEQ ID NO: 2, 3 or 4.
11. The D47 antibody of claim 1, which comprises (i) a heavy chain variable region comprising complementarity determining region (CDR) 1, 2, and 3 of antibody 2A1; and (ii) a light chain variable region comprising CDRl, CDR2, and CDR3 of antibody 2A1.
12. The anti-CD47 antibody of claim 1, which comprises (i) a heavy chain variable region comprising complementarity determining region (CDR) 1, 2, and 3 comprising amino acid sequences GFNIKDYYLH (SEQ ID NO: 14), WIDPDQGDTE (SEQ ID NO: 15), and NAAYGSSSYPMDY (SEQ ID NO: 16), respectively; and (ii) a light chain variable region comprising CDRl, CDR2, and CDR3 comprising amino acid ces KASQDIHRYLS (SEQ ID NO: 17), RANRLVS (SEQ ID NO: 18), and LQYDEFPYT (SEQ ID NO: 19), respectively.
13. The anti-CD47 antibody of any one of claims 1—12, which comprises one or more amino acid modifications ve to the parental antibody.
14. The anti-CD47 antibody of claim 13, wherein the one or more amino acid substitutions is in the framework region of the heavy chain variable region or light chain le region.
15. The anti-CD47 dy of claim 13, which comprises 13 or 14 amino acid modifications in the framework region of the heavy chain variable region.
16. The anti-CD47 antibody of claim 13, which ses 1 to 15 amino acid modifications in the framework region of the heavy chain variable region.
17. The anti-CD47 antibody of any one of claims 13—16, wherein the amino acid modifications are vative amino acid substitutions
18. The anti-CD47 antibody of any one of claims 1-12, which comprises a heavy chain variable region (VH) comprising the amino acid sequence:
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