IL287706A - שיטות לזיהוי וריאנטים של חומצת גרעין - Google Patents
שיטות לזיהוי וריאנטים של חומצת גרעיןInfo
- Publication number
- IL287706A IL287706A IL287706A IL28770621A IL287706A IL 287706 A IL287706 A IL 287706A IL 287706 A IL287706 A IL 287706A IL 28770621 A IL28770621 A IL 28770621A IL 287706 A IL287706 A IL 287706A
- Authority
- IL
- Israel
- Prior art keywords
- methods
- nucleic acid
- acid variants
- detecting nucleic
- variants
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2537/00—Reactions characterised by the reaction format or use of a specific feature
- C12Q2537/10—Reactions characterised by the reaction format or use of a specific feature the purpose or use of
- C12Q2537/149—Sequential reactions
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
- G01N2021/6439—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" with indicators, stains, dyes, tags, labels, marks
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- General Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Analytical Chemistry (AREA)
- Theoretical Computer Science (AREA)
- Medical Informatics (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Molecular Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- Genetics & Genomics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- General Engineering & Computer Science (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- Data Mining & Analysis (AREA)
- Software Systems (AREA)
- Databases & Information Systems (AREA)
- Epidemiology (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Bioethics (AREA)
- Artificial Intelligence (AREA)
- Evolutionary Computation (AREA)
- Public Health (AREA)
- Signal Processing (AREA)
- Mathematical Physics (AREA)
- General Physics & Mathematics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201962842534P | 2019-05-03 | 2019-05-03 | |
US202062971530P | 2020-02-07 | 2020-02-07 | |
PCT/US2020/031147 WO2020227137A1 (en) | 2019-05-03 | 2020-05-01 | Methods for detecting nucleic acid variants |
Publications (1)
Publication Number | Publication Date |
---|---|
IL287706A true IL287706A (he) | 2021-12-01 |
Family
ID=73050881
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
IL287706A IL287706A (he) | 2019-05-03 | 2021-10-31 | שיטות לזיהוי וריאנטים של חומצת גרעין |
Country Status (9)
Country | Link |
---|---|
US (2) | US11763915B2 (he) |
EP (1) | EP3963105A4 (he) |
JP (1) | JP2022531017A (he) |
KR (1) | KR20220031860A (he) |
CN (1) | CN114072523A (he) |
AU (1) | AU2020267365A1 (he) |
CA (1) | CA3138986A1 (he) |
IL (1) | IL287706A (he) |
WO (1) | WO2020227137A1 (he) |
Families Citing this family (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP3939047A4 (en) | 2019-03-10 | 2022-11-30 | Ultima Genomics, Inc. | METHODS AND SYSTEMS FOR SEQUENCE CALLING |
CN114072523A (zh) | 2019-05-03 | 2022-02-18 | 阿尔缇玛基因组学公司 | 用于检测核酸变体的方法 |
JP2022533801A (ja) | 2019-05-03 | 2022-07-25 | ウルティマ ジェノミクス, インコーポレイテッド | 合成による高速フォワードシークエンシング |
CN114423873A (zh) | 2019-07-10 | 2022-04-29 | 阿尔缇玛基因组学公司 | Rna测序方法 |
EP4186982A1 (en) * | 2021-11-24 | 2023-05-31 | Miltenyi Biotec B.V. & Co. KG | Sequencing of dna by sequential addition/incorporation of 3' unprotected labeled nucleotides |
Family Cites Families (20)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2010117804A2 (en) | 2009-03-30 | 2010-10-14 | The Regents Of The University Of California | Mostly natural dna sequencing by synthesis |
WO2011137368A2 (en) | 2010-04-30 | 2011-11-03 | Life Technologies Corporation | Systems and methods for analyzing nucleic acid sequences |
US20120035062A1 (en) * | 2010-06-11 | 2012-02-09 | Life Technologies Corporation | Alternative nucleotide flows in sequencing-by-synthesis methods |
US20120102054A1 (en) * | 2010-10-25 | 2012-04-26 | Life Technologies Corporation | Systems and Methods for Annotating Biomolecule Data |
US20130090860A1 (en) | 2010-12-30 | 2013-04-11 | Life Technologies Corporation | Methods, systems, and computer readable media for making base calls in nucleic acid sequencing |
US20130073214A1 (en) * | 2011-09-20 | 2013-03-21 | Life Technologies Corporation | Systems and methods for identifying sequence variation |
US20130345066A1 (en) | 2012-05-09 | 2013-12-26 | Life Technologies Corporation | Systems and methods for identifying sequence variation |
US20140052381A1 (en) | 2012-08-14 | 2014-02-20 | Life Technologies Corporation | Systems and Methods for Detecting Homopolymer Insertions/Deletions |
US20140296080A1 (en) | 2013-03-14 | 2014-10-02 | Life Technologies Corporation | Methods, Systems, and Computer Readable Media for Evaluating Variant Likelihood |
WO2015031689A1 (en) * | 2013-08-30 | 2015-03-05 | Personalis, Inc. | Methods and systems for genomic analysis |
US9817944B2 (en) * | 2014-02-11 | 2017-11-14 | Seven Bridges Genomics Inc. | Systems and methods for analyzing sequence data |
EP3700856A4 (en) * | 2017-10-26 | 2021-12-15 | Ultima Genomics, Inc. | METHODS AND SYSTEMS FOR SEQUENCE CALL |
US10273528B1 (en) | 2017-11-17 | 2019-04-30 | Ultima Genomics, Inc. | Methods and systems for analyte detection and analysis |
CN114072523A (zh) | 2019-05-03 | 2022-02-18 | 阿尔缇玛基因组学公司 | 用于检测核酸变体的方法 |
JP2022533801A (ja) | 2019-05-03 | 2022-07-25 | ウルティマ ジェノミクス, インコーポレイテッド | 合成による高速フォワードシークエンシング |
WO2020236630A1 (en) | 2019-05-17 | 2020-11-26 | Ultima Genomics, Inc. | Methods and systems for detecting residual disease |
CN114423873A (zh) | 2019-07-10 | 2022-04-29 | 阿尔缇玛基因组学公司 | Rna测序方法 |
US20230407385A1 (en) | 2020-11-04 | 2023-12-21 | Ultima Genomics, Inc. | Methods and systems for phasing sequencing strands and long-range sequencing |
WO2022099271A1 (en) | 2020-11-04 | 2022-05-12 | Ultima Genomics, Inc. | Methods and systems for determining sequencing read distances |
WO2022109574A1 (en) | 2020-11-18 | 2022-05-27 | Ultima Genomics, Inc. | Methods and systems for detecting residual disease |
-
2020
- 2020-05-01 CN CN202080048530.7A patent/CN114072523A/zh active Pending
- 2020-05-01 WO PCT/US2020/031147 patent/WO2020227137A1/en unknown
- 2020-05-01 AU AU2020267365A patent/AU2020267365A1/en active Pending
- 2020-05-01 CA CA3138986A patent/CA3138986A1/en active Pending
- 2020-05-01 EP EP20802083.4A patent/EP3963105A4/en active Pending
- 2020-05-01 JP JP2021565779A patent/JP2022531017A/ja active Pending
- 2020-05-01 KR KR1020217039566A patent/KR20220031860A/ko unknown
- 2020-05-01 US US16/864,981 patent/US11763915B2/en active Active
-
2021
- 2021-10-31 IL IL287706A patent/IL287706A/he unknown
-
2023
- 2023-07-31 US US18/362,754 patent/US20240120025A1/en active Pending
Also Published As
Publication number | Publication date |
---|---|
EP3963105A1 (en) | 2022-03-09 |
EP3963105A4 (en) | 2023-12-20 |
KR20220031860A (ko) | 2022-03-14 |
US11763915B2 (en) | 2023-09-19 |
US20240120025A1 (en) | 2024-04-11 |
CA3138986A1 (en) | 2020-11-12 |
WO2020227137A1 (en) | 2020-11-12 |
US20200372971A1 (en) | 2020-11-26 |
CN114072523A (zh) | 2022-02-18 |
AU2020267365A1 (en) | 2021-11-25 |
JP2022531017A (ja) | 2022-07-05 |
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