HK1254581A1 - 生物信息學系統、裝置和在集成電路處理平台上執行的方法 - Google Patents

生物信息學系統、裝置和在集成電路處理平台上執行的方法

Info

Publication number
HK1254581A1
HK1254581A1 HK18113286.6A HK18113286A HK1254581A1 HK 1254581 A1 HK1254581 A1 HK 1254581A1 HK 18113286 A HK18113286 A HK 18113286A HK 1254581 A1 HK1254581 A1 HK 1254581A1
Authority
HK
Hong Kong
Prior art keywords
apparatuses
integrated circuit
processing platform
circuit processing
methods executed
Prior art date
Application number
HK18113286.6A
Other languages
English (en)
Inventor
Van Rooyen Pieter
Ruehle Michael
Mehio Rami
Hahm Mark
Original Assignee
Edico Genome Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US14/811,836 external-priority patent/US20220019919A1/en
Priority claimed from US15/048,935 external-priority patent/US20160171153A1/en
Priority claimed from US15/059,221 external-priority patent/US10068054B2/en
Priority claimed from US15/094,939 external-priority patent/US9792405B2/en
Application filed by Edico Genome Corp filed Critical Edico Genome Corp
Publication of HK1254581A1 publication Critical patent/HK1254581A1/zh

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • Medical Informatics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Chemical & Material Sciences (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
HK18113286.6A 2015-07-02 2018-10-17 生物信息學系統、裝置和在集成電路處理平台上執行的方法 HK1254581A1 (zh)

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
US201562188443P 2015-07-02 2015-07-02
US14/811,836 US20220019919A1 (en) 2015-07-02 2015-07-29 Method And System For A Reduced Computation Hidden Markov Model In Computational Biology Applications
US15/048,935 US20160171153A1 (en) 2013-01-17 2016-02-19 Bioinformatics Systems, Apparatuses, And Methods Executed On An Integrated Circuit Processing Platform
US15/059,221 US10068054B2 (en) 2013-01-17 2016-03-02 Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US15/094,939 US9792405B2 (en) 2013-01-17 2016-04-08 Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
PCT/US2016/040842 WO2017004589A1 (en) 2015-07-02 2016-07-01 Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform

Publications (1)

Publication Number Publication Date
HK1254581A1 true HK1254581A1 (zh) 2019-07-19

Family

ID=57609574

Family Applications (1)

Application Number Title Priority Date Filing Date
HK18113286.6A HK1254581A1 (zh) 2015-07-02 2018-10-17 生物信息學系統、裝置和在集成電路處理平台上執行的方法

Country Status (4)

Country Link
EP (2) EP3608913A1 (zh)
AU (3) AU2016287752B2 (zh)
HK (1) HK1254581A1 (zh)
WO (1) WO2017004589A1 (zh)

Families Citing this family (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11183270B2 (en) 2017-12-07 2021-11-23 International Business Machines Corporation Next generation sequencing sorting in time and space complexity using location integers
AU2019369302A1 (en) 2018-10-31 2021-01-21 Illumina, Inc. Systems and methods for grouping and collapsing sequencing reads
AU2020285655A1 (en) * 2019-05-24 2021-01-14 Illumina, Inc. Flexible seed extension for hash table genomic mapping
CN111416654B (zh) * 2020-03-16 2021-07-09 北京邮电大学 一种基于硬件加速的卫星虚拟化信关站传输架构
CN111370064B (zh) * 2020-03-19 2023-05-05 山东大学 基于simd的哈希函数的基因序列快速分类方法及***
US20220019665A1 (en) * 2020-07-20 2022-01-20 Cybereason Inc. Systems and methods for determining measurements of similarity between various types of data
WO2023172848A1 (en) * 2022-03-08 2023-09-14 Illumina, Inc. Multi-pass software-accelerated genomic read mapping engine

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US701100A (en) * 1901-05-16 1902-05-27 Samuel Stewart Gas heating-stove.
KR101188886B1 (ko) * 2010-10-22 2012-10-09 삼성에스디에스 주식회사 유전 정보 관리 시스템 및 방법
US9600625B2 (en) * 2012-04-23 2017-03-21 Bina Technologies, Inc. Systems and methods for processing nucleic acid sequence data
US9679104B2 (en) * 2013-01-17 2017-06-13 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
WO2014113736A1 (en) 2013-01-17 2014-07-24 Edico Genome Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US9734284B2 (en) * 2013-03-15 2017-08-15 Micron Technology, Inc. Hardware acceleration of short read mapping for genomic and other types of analyses

Also Published As

Publication number Publication date
EP3608913A1 (en) 2020-02-12
AU2016287752A1 (en) 2018-02-22
AU2022201429A1 (en) 2022-03-24
WO2017004589A1 (en) 2017-01-05
EP3317440A4 (en) 2019-03-27
EP3317440A1 (en) 2018-05-09
AU2024201692A1 (en) 2024-05-02
AU2016287752B2 (en) 2021-12-02

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