EP3443531A4 - Systems and methods for biological data management - Google Patents

Systems and methods for biological data management Download PDF

Info

Publication number
EP3443531A4
EP3443531A4 EP17782394.5A EP17782394A EP3443531A4 EP 3443531 A4 EP3443531 A4 EP 3443531A4 EP 17782394 A EP17782394 A EP 17782394A EP 3443531 A4 EP3443531 A4 EP 3443531A4
Authority
EP
European Patent Office
Prior art keywords
systems
methods
data management
biological data
biological
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP17782394.5A
Other languages
German (de)
French (fr)
Other versions
EP3443531A1 (en
Inventor
Masoud Vakili
Kurt CHRISTOFFERSON
Mark Oldham
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Quantum Biosystems Inc
Original Assignee
Quantum Biosystems Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Quantum Biosystems Inc filed Critical Quantum Biosystems Inc
Publication of EP3443531A1 publication Critical patent/EP3443531A1/en
Publication of EP3443531A4 publication Critical patent/EP3443531A4/en
Withdrawn legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06Q—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR ADMINISTRATIVE, COMMERCIAL, FINANCIAL, MANAGERIAL OR SUPERVISORY PURPOSES; SYSTEMS OR METHODS SPECIALLY ADAPTED FOR ADMINISTRATIVE, COMMERCIAL, FINANCIAL, MANAGERIAL OR SUPERVISORY PURPOSES, NOT OTHERWISE PROVIDED FOR
    • G06Q50/00—Systems or methods specially adapted for specific business sectors, e.g. utilities or tourism
    • G06Q50/10—Services
    • G06Q50/22—Social work
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
    • G06F17/10—Complex mathematical operations
    • G06F17/18—Complex mathematical operations for evaluating statistical data, e.g. average values, frequency distributions, probability functions, regression analysis
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06Q—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR ADMINISTRATIVE, COMMERCIAL, FINANCIAL, MANAGERIAL OR SUPERVISORY PURPOSES; SYSTEMS OR METHODS SPECIALLY ADAPTED FOR ADMINISTRATIVE, COMMERCIAL, FINANCIAL, MANAGERIAL OR SUPERVISORY PURPOSES, NOT OTHERWISE PROVIDED FOR
    • G06Q10/00—Administration; Management
    • G06Q10/10—Office automation; Time management
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/40—Encryption of genetic data
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/50—Compression of genetic data
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00—ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H10/00—ICT specially adapted for the handling or processing of patient-related medical or healthcare data
    • G16H10/40—ICT specially adapted for the handling or processing of patient-related medical or healthcare data for data related to laboratory analysis, e.g. patient specimen analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H15/00—ICT specially adapted for medical reports, e.g. generation or transmission thereof
EP17782394.5A 2016-04-11 2017-04-11 Systems and methods for biological data management Withdrawn EP3443531A4 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201662321103P 2016-04-11 2016-04-11
PCT/JP2017/014847 WO2017179581A1 (en) 2016-04-11 2017-04-11 Systems and methods for biological data management

Publications (2)

Publication Number Publication Date
EP3443531A1 EP3443531A1 (en) 2019-02-20
EP3443531A4 true EP3443531A4 (en) 2020-07-22

Family

ID=60041640

Family Applications (1)

Application Number Title Priority Date Filing Date
EP17782394.5A Withdrawn EP3443531A4 (en) 2016-04-11 2017-04-11 Systems and methods for biological data management

Country Status (7)

Country Link
US (1) US20190304571A1 (en)
EP (1) EP3443531A4 (en)
JP (1) JP2019517056A (en)
KR (1) KR20190017738A (en)
CN (1) CN109937426A (en)
CA (1) CA3020669A1 (en)
WO (1) WO2017179581A1 (en)

Families Citing this family (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9194838B2 (en) 2010-03-03 2015-11-24 Osaka University Method and device for identifying nucleotide, and method and device for determining nucleotide sequence of polynucleotide
EP3047282B1 (en) 2013-09-18 2019-05-15 Quantum Biosystems Inc. Biomolecule sequencing devices, systems and methods
JP2015077652A (en) 2013-10-16 2015-04-23 クオンタムバイオシステムズ株式会社 Nano-gap electrode and method for manufacturing same
US10438811B1 (en) 2014-04-15 2019-10-08 Quantum Biosystems Inc. Methods for forming nano-gap electrodes for use in nanosensors
WO2015170782A1 (en) 2014-05-08 2015-11-12 Osaka University Devices, systems and methods for linearization of polymers
GB2554883A (en) * 2016-10-11 2018-04-18 Petagene Ltd System and method for storing and accessing data
US20190318118A1 (en) * 2018-04-16 2019-10-17 International Business Machines Corporation Secure encrypted document retrieval
CN114996763B (en) * 2022-07-28 2022-11-15 北京锘崴信息科技有限公司 Private data security analysis method and device based on trusted execution environment

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP2634716A1 (en) * 2012-02-28 2013-09-04 Koninklijke Philips Electronics N.V. Tamper-proof genetic sequence processing
WO2015134664A1 (en) * 2014-03-04 2015-09-11 Bigdatabio, Llc Methods and systems for biological sequence alignment

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JPS6437640A (en) * 1987-08-03 1989-02-08 Mitsubishi Electric Corp Control system for cache memory
JPH04289938A (en) * 1991-03-18 1992-10-14 Nippon Telegr & Teleph Corp <Ntt> Cache memory control system
JPH10283230A (en) * 1997-03-31 1998-10-23 Nec Corp File data storage device and machine-readable recording medium with program recorded
JP4259902B2 (en) * 2003-04-01 2009-04-30 日立オムロンターミナルソリューションズ株式会社 Information reading device, program for information reading device
KR100826065B1 (en) * 2004-03-31 2008-04-29 마츠시타 덴끼 산교 가부시키가이샤 Memory card and memory card system
US8340914B2 (en) * 2004-11-08 2012-12-25 Gatewood Joe M Methods and systems for compressing and comparing genomic data
US8055979B2 (en) * 2006-01-20 2011-11-08 Marvell World Trade Ltd. Flash memory with coding and signal processing
JP2008146538A (en) * 2006-12-13 2008-06-26 Intec Web & Genome Informatics Corp Microrna detector, detection method and program
CN101497924A (en) * 2008-01-30 2009-08-05 中国农业大学 Biological sequence analysis method based on gap spectrum
EP3406737B1 (en) * 2009-11-06 2023-05-31 The Chinese University of Hong Kong Size-based genomic analysis
US20110238482A1 (en) * 2010-03-29 2011-09-29 Carney John S Digital Profile System of Personal Attributes, Tendencies, Recommended Actions, and Historical Events with Privacy Preserving Controls
JP2012118709A (en) * 2010-11-30 2012-06-21 Brother Ind Ltd Distribution system, storage capacity decision program, and storage capacity decision method
CN102915594A (en) * 2011-08-04 2013-02-06 深圳市凯智汇科技有限公司 Bank card security system based on human body biological information code and operation method thereof
JP6054790B2 (en) * 2013-03-28 2016-12-27 三菱スペース・ソフトウエア株式会社 Gene information storage device, gene information search device, gene information storage program, gene information search program, gene information storage method, gene information search method, and gene information search system
CN103559427B (en) * 2013-11-12 2017-10-31 高扬 A kind of use Digital ID biological sequence and the method for inferring species affiliation
JP6576957B2 (en) * 2014-02-26 2019-09-18 ナントミクス，エルエルシー Safe portable genome browsing device and method thereof
CN105447844A (en) * 2014-08-15 2016-03-30 大连达硕信息技术有限公司 New method for characteristic selection of complex multivariable data

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP2634716A1 (en) * 2012-02-28 2013-09-04 Koninklijke Philips Electronics N.V. Tamper-proof genetic sequence processing
WO2015134664A1 (en) * 2014-03-04 2015-09-11 Bigdatabio, Llc Methods and systems for biological sequence alignment

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
See also references of WO2017179581A1 *
WAN-PING LEE ET AL: "MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping", PLOS ONE, vol. 9, no. 3, 5 March 2014 (2014-03-05), pages e90581, XP055669618, DOI: 10.1371/journal.pone.0090581 *

Also Published As

Publication number Publication date
CN109937426A (en) 2019-06-25
KR20190017738A (en) 2019-02-20
JP2019517056A (en) 2019-06-20
WO2017179581A1 (en) 2017-10-19
EP3443531A1 (en) 2019-02-20
CA3020669A1 (en) 2017-10-19
US20190304571A1 (en) 2019-10-03

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