EP1194768A4 - Polypeptide fingerprinting methods, metabolic profiling, and bioinformatics database - Google Patents
Polypeptide fingerprinting methods, metabolic profiling, and bioinformatics databaseInfo
- Publication number
- EP1194768A4 EP1194768A4 EP00923511A EP00923511A EP1194768A4 EP 1194768 A4 EP1194768 A4 EP 1194768A4 EP 00923511 A EP00923511 A EP 00923511A EP 00923511 A EP00923511 A EP 00923511A EP 1194768 A4 EP1194768 A4 EP 1194768A4
- Authority
- EP
- European Patent Office
- Prior art keywords
- metabolic profiling
- fingerprinting methods
- bioinformatics database
- polypeptide
- polypeptide fingerprinting
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
Links
Classifications
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
- G01N33/6848—Methods of protein analysis involving mass spectrometry
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
- G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
- G01N27/416—Systems
- G01N27/447—Systems using electrophoresis
- G01N27/44704—Details; Accessories
- G01N27/44717—Arrangements for investigating the separated zones, e.g. localising zones
- G01N27/44721—Arrangements for investigating the separated zones, e.g. localising zones by optical means
- G01N27/44726—Arrangements for investigating the separated zones, e.g. localising zones by optical means using specific dyes, markers or binding molecules
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
- G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
- G01N27/416—Systems
- G01N27/447—Systems using electrophoresis
- G01N27/44756—Apparatus specially adapted therefor
- G01N27/44773—Multi-stage electrophoresis, e.g. two-dimensional electrophoresis
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
- G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
- G01N27/416—Systems
- G01N27/447—Systems using electrophoresis
- G01N27/44756—Apparatus specially adapted therefor
- G01N27/44782—Apparatus specially adapted therefor of a plurality of samples
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
- G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
- G01N27/416—Systems
- G01N27/447—Systems using electrophoresis
- G01N27/44756—Apparatus specially adapted therefor
- G01N27/44795—Isoelectric focusing
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
- Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- Chemical & Material Sciences (AREA)
- Physics & Mathematics (AREA)
- Immunology (AREA)
- Engineering & Computer Science (AREA)
- Pathology (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- General Physics & Mathematics (AREA)
- Electrochemistry (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Urology & Nephrology (AREA)
- Hematology (AREA)
- Biomedical Technology (AREA)
- Cell Biology (AREA)
- Biotechnology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Microbiology (AREA)
- Biophysics (AREA)
- Food Science & Technology (AREA)
- Medicinal Chemistry (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
- Peptides Or Proteins (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
EP10180277A EP2293056A3 (en) | 1999-04-20 | 2000-04-19 | A method for analysing a metabolic pathway |
Applications Claiming Priority (9)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US13023899P | 1999-04-20 | 1999-04-20 | |
US130238P | 1999-04-20 | ||
US513486 | 2000-02-25 | ||
US513395 | 2000-02-25 | ||
US513907 | 2000-02-25 | ||
US09/513,395 US6379971B1 (en) | 1998-02-24 | 2000-02-25 | Methods for sequencing proteins |
US09/513,907 US6677114B1 (en) | 1999-04-20 | 2000-02-25 | Polypeptide fingerprinting methods and bioinformatics database system |
US09/513,486 US6537432B1 (en) | 1998-02-24 | 2000-02-25 | Protein separation via multidimensional electrophoresis |
PCT/US2000/010504 WO2000063683A1 (en) | 1999-04-20 | 2000-04-19 | Polypeptide fingerprinting methods, metabolic profiling, and bioinformatics database |
Publications (2)
Publication Number | Publication Date |
---|---|
EP1194768A1 EP1194768A1 (en) | 2002-04-10 |
EP1194768A4 true EP1194768A4 (en) | 2008-03-26 |
Family
ID=27494844
Family Applications (2)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP00923511A Withdrawn EP1194768A4 (en) | 1999-04-20 | 2000-04-19 | Polypeptide fingerprinting methods, metabolic profiling, and bioinformatics database |
EP10180277A Withdrawn EP2293056A3 (en) | 1999-04-20 | 2000-04-19 | A method for analysing a metabolic pathway |
Family Applications After (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP10180277A Withdrawn EP2293056A3 (en) | 1999-04-20 | 2000-04-19 | A method for analysing a metabolic pathway |
Country Status (6)
Country | Link |
---|---|
EP (2) | EP1194768A4 (en) |
JP (2) | JP4723725B2 (en) |
AU (2) | AU774662B2 (en) |
CA (1) | CA2370749A1 (en) |
IL (1) | IL146093A0 (en) |
WO (1) | WO2000063683A1 (en) |
Families Citing this family (54)
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CA2298181C (en) | 2000-02-02 | 2006-09-19 | Dayan Burke Goodnough | Non-targeted complex sample analysis |
EP2479578A1 (en) | 2000-10-19 | 2012-07-25 | Target Discovery, Inc. | Mass defect labeling for the determination of oligomer sequences |
DE10123711A1 (en) * | 2001-05-15 | 2003-02-27 | Wolfgang Altmeyer | Procedure for determining the origin of biological materials |
US6800449B1 (en) | 2001-07-13 | 2004-10-05 | Syngenta Participations Ag | High throughput functional proteomics |
JP4873801B2 (en) * | 2001-08-10 | 2012-02-08 | サントリーホールディングス株式会社 | Structural analysis method for organic compounds |
DK1437966T3 (en) | 2001-10-24 | 2011-07-04 | Univ California | Measurement of protein synthesis rates in humans and in experimental systems using isotopically labeled water |
CA2475924C (en) | 2002-02-12 | 2016-03-29 | The Regents Of The University Of California | Non-invasive method for measuring rates of biosynthesis of biological molecules by label incorporation |
EP2299274A1 (en) * | 2002-03-07 | 2011-03-23 | Medical Research Council | SCD fingerprints |
EP1361438A1 (en) * | 2002-05-10 | 2003-11-12 | Proteome Factory AG | Solid-phase assisted spectroscopic and spectrometric analysis of complex peptide mixes |
EP1504267B1 (en) * | 2002-05-10 | 2007-12-12 | Proteome Factory AG | Solid-phase assisted spectroscopic and spectrometric analysis of complex biopolymer mixtures |
AU2003256819B2 (en) * | 2002-07-30 | 2009-11-12 | The Regents Of The University Of California | Method for automated, large-scale measurement of the molecular flux rates of the proteome or the organeome using mass spectrometry |
ATE415486T1 (en) | 2002-09-13 | 2008-12-15 | Univ California | METHOD FOR MEASURING SPEEDS OF CHOLESTEROL REVERSE TRANSPORT IN VIVO AS AN INDEX OF ANTI-ARTHEROGENESIS |
JP4795688B2 (en) * | 2002-10-09 | 2011-10-19 | ウオーターズ・テクノロジーズ・コーポレイシヨン | Method and apparatus for identifying compounds in a sample |
JP4611025B2 (en) | 2002-11-04 | 2011-01-12 | ザ リージェンツ オブ ザ ユニバーシティ オブ カリフォルニア | Deuterated glucose or fat tolerance test for high-throughput measurement of glucose or fatty acid metabolism in the body |
US7425700B2 (en) | 2003-05-22 | 2008-09-16 | Stults John T | Systems and methods for discovery and analysis of markers |
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WO2005006988A1 (en) | 2003-06-19 | 2005-01-27 | Everest Biomedical Instruments | Breath end-tidal gas monitor |
US7262020B2 (en) | 2003-07-03 | 2007-08-28 | The Regents Of The University Of California | Methods for comparing relative flux rates of two or more biological molecules in vivo through a single protocol |
US20050202406A1 (en) | 2003-11-25 | 2005-09-15 | The Regents Of The University Of California | Method for high-throughput screening of compounds and combinations of compounds for discovery and quantification of actions, particularly unanticipated therapeutic or toxic actions, in biological systems |
US7598033B2 (en) * | 2003-12-15 | 2009-10-06 | University Of Pennsylvania | Method and devices for running reactions on a target plate for MALDI mass spectrometry |
US8510054B2 (en) | 2004-02-05 | 2013-08-13 | Ajinomoto Co., Inc. | Intracellular metabolic flux analysis method using substrate labeled with isotope |
TW200538738A (en) | 2004-02-20 | 2005-12-01 | Univ California | Molecular flux rates through critical pathways measured by stable isotope labeling in vivo, as biomarkers of drug action and disease activity |
EP1723252A4 (en) * | 2004-03-11 | 2009-07-29 | Univ California | Temporal or spatial characterization of biosynthetic events in living organisms by isotopic fingerprinting under conditions of imposed isotopic gradients |
KR100611313B1 (en) * | 2004-06-30 | 2006-08-10 | 고려대학교 산학협력단 | Compound for derivatizing polypeptides, method for sequencing and quantifying aminoacids in polypeptides using the same |
JP4512745B2 (en) * | 2004-10-29 | 2010-07-28 | 独立行政法人産業技術総合研究所 | Cell separation and identification apparatus and method |
JP2008064459A (en) * | 2004-12-24 | 2008-03-21 | Univ Kurume | Method of quantitative determination for factor derived from pigment epithelium |
JP2006308523A (en) * | 2005-05-02 | 2006-11-09 | Ebara Corp | Method for coating inside of microchannel for microchip for electrophoresis, and coated microchip for electrophoresis prepared by the method |
CA2772688A1 (en) | 2005-09-12 | 2007-03-22 | Phenomenome Discoveries Inc. | Methods for the diagnosis of colorectal cancer and ovarian cancer health states |
JP2007163423A (en) * | 2005-12-16 | 2007-06-28 | Ajinomoto Co Inc | Amino acid analytical method by mass spectrometer |
US8626449B2 (en) | 2006-10-17 | 2014-01-07 | The Regents Of The University Of California | Biological cell sorting and characterization using aerosol mass spectrometry |
US20100312487A1 (en) * | 2006-11-15 | 2010-12-09 | Shimadzu Corporation | Mass analysis data analyzing method and apparatus thereof |
FR2936316B1 (en) * | 2008-09-25 | 2015-05-01 | Etat Francais Dga | DEVICE FOR SELECTIVE PRECONCENTRATION / DETECTION OF CHARGED ANALYTES CONTAINED IN AN ELECTROLYTE AND ASSOCIATED METHOD. |
CA2794248C (en) * | 2010-03-24 | 2018-02-20 | Glendon John Parker | Methods for conducting genetic analysis using protein polymorphisms |
GB201019337D0 (en) | 2010-11-16 | 2010-12-29 | Micromass Ltd | Controlling hydrogen-deuterium exchange on a spectrum by spectrum basis |
WO2013036885A1 (en) | 2011-09-08 | 2013-03-14 | The Regents Of The University Of California | Metabolic flux measurement, imaging and microscopy |
JP6294233B2 (en) | 2011-12-07 | 2018-03-14 | グラクソスミスクライン エルエルシー | Quantification method for whole body skeletal muscle mass |
EP2794033B1 (en) | 2011-12-21 | 2021-08-18 | Capnia, Inc. | Analysis of exhaled gas with breathing parameter frequency compensation |
WO2013163451A1 (en) | 2012-04-27 | 2013-10-31 | Bio-Rad Laboratories, Inc. | Stain-free protein quantification and normalization |
KR20150104607A (en) | 2013-01-08 | 2015-09-15 | 카프니아, 인코포레이티드 | Breath selection for analysis |
JP5977269B2 (en) | 2013-01-22 | 2016-08-24 | アークレイ株式会社 | Sample analysis method and solution used therefor |
MX2015010391A (en) * | 2013-02-12 | 2015-10-29 | Capnia Inc | Sampling and storage registry device for breath gas analysis. |
US9134319B2 (en) | 2013-03-15 | 2015-09-15 | The Regents Of The University Of California | Method for replacing biomarkers of protein kinetics from tissue samples by biomarkers of protein kinetics from body fluids after isotopic labeling in vivo |
RU2016111654A (en) | 2013-08-30 | 2017-10-05 | Кэпниа, Инк. | CARBON GAS MEASUREMENT SYSTEM IN NEWBORNS |
JP6281349B2 (en) * | 2014-03-19 | 2018-02-21 | 株式会社島津製作所 | Method for preparing a peptide mixture sample for mass spectrometry |
WO2016033382A1 (en) | 2014-08-27 | 2016-03-03 | Capnia, Inc. | Methods for immune globulin administration |
JP6264595B2 (en) | 2015-03-09 | 2018-01-24 | パナソニックIpマネジメント株式会社 | Microfluidic device |
PL3294775T3 (en) * | 2015-05-12 | 2021-12-13 | Regeneron Pharmaceuticals, Inc. | Multimeric protein purity determination |
WO2017163413A1 (en) * | 2016-03-25 | 2017-09-28 | 科健化学株式会社 | Hollow-column liquid chromatography system and substance separation using said system |
JP2022519246A (en) * | 2019-01-31 | 2022-03-22 | リジェネロン・ファーマシューティカルズ・インコーポレイテッド | Native microfluidic CE-MS analysis method for antibody charge heterogeneity |
EP4010456A4 (en) | 2019-08-05 | 2023-09-13 | Seer, Inc. | Systems and methods for sample preparation, data generation, and protein corona analysis |
CN113433200A (en) * | 2021-06-16 | 2021-09-24 | 华南农业大学 | Method for identifying cross-linked polymer by electrospray mass spectrometry technology |
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Citations (2)
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WO1996033405A1 (en) * | 1995-04-17 | 1996-10-24 | Mayo Foundation For Medical Education And Research | Sample preprocessor |
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-
2000
- 2000-04-19 CA CA002370749A patent/CA2370749A1/en not_active Abandoned
- 2000-04-19 IL IL14609300A patent/IL146093A0/en not_active IP Right Cessation
- 2000-04-19 AU AU43624/00A patent/AU774662B2/en not_active Ceased
- 2000-04-19 JP JP2000612736A patent/JP4723725B2/en not_active Expired - Fee Related
- 2000-04-19 EP EP00923511A patent/EP1194768A4/en not_active Withdrawn
- 2000-04-19 WO PCT/US2000/010504 patent/WO2000063683A1/en active Application Filing
- 2000-04-19 EP EP10180277A patent/EP2293056A3/en not_active Withdrawn
-
2004
- 2004-09-30 AU AU2004216642A patent/AU2004216642B2/en not_active Ceased
-
2010
- 2010-06-04 JP JP2010128894A patent/JP2010249831A/en active Pending
Patent Citations (2)
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---|---|---|---|---|
EP0653631A2 (en) * | 1993-11-11 | 1995-05-17 | Ciba-Geigy Ag | Apparatus and method for the electrophoretical separation of mixtures of fluid substances |
WO1996033405A1 (en) * | 1995-04-17 | 1996-10-24 | Mayo Foundation For Medical Education And Research | Sample preprocessor |
Non-Patent Citations (3)
Title |
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FIGEYS D ET AL: "PROTEIN IDENTIFICATION BY SOLID PHASE MICROEXTRACTION-CAPILLARY ZONE ELECTROPHORESIS-MICROELECTROSPRAY-TANDEM MASS SPECTROMETRY", BIO/TECHNOLOGY, NATURE PUBLISHING CO. NEW YORK, US, vol. 14, no. 11, 1996, pages 1579 - 1583, XP001041771, ISSN: 0733-222X * |
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JP4723725B2 (en) | 2011-07-13 |
JP2010249831A (en) | 2010-11-04 |
AU2004216642B2 (en) | 2007-05-10 |
AU4362400A (en) | 2000-11-02 |
WO2000063683A1 (en) | 2000-10-26 |
AU774662B2 (en) | 2004-07-01 |
JP2003529044A (en) | 2003-09-30 |
AU2004216642A1 (en) | 2004-10-28 |
EP1194768A1 (en) | 2002-04-10 |
EP2293056A3 (en) | 2011-06-29 |
CA2370749A1 (en) | 2000-10-26 |
IL146093A0 (en) | 2002-07-25 |
EP2293056A2 (en) | 2011-03-09 |
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