CN116622664A - Method for generating C-glycoside through biocatalysis - Google Patents
Method for generating C-glycoside through biocatalysis Download PDFInfo
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- CN116622664A CN116622664A CN202310761371.0A CN202310761371A CN116622664A CN 116622664 A CN116622664 A CN 116622664A CN 202310761371 A CN202310761371 A CN 202310761371A CN 116622664 A CN116622664 A CN 116622664A
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- Prior art keywords
- mutant
- qdp
- genetically engineered
- engineered bacterium
- glycosyltransferase
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Links
- 238000000034 method Methods 0.000 title claims abstract description 23
- 229930182476 C-glycoside Natural products 0.000 title claims abstract description 9
- 150000000700 C-glycosides Chemical class 0.000 title claims abstract description 9
- 102000004190 Enzymes Human genes 0.000 claims abstract description 36
- 108090000790 Enzymes Proteins 0.000 claims abstract description 36
- 108700023372 Glycosyltransferases Proteins 0.000 claims abstract description 23
- 102000051366 Glycosyltransferases Human genes 0.000 claims abstract description 21
- 108090000623 proteins and genes Proteins 0.000 claims abstract description 19
- 239000011942 biocatalyst Substances 0.000 claims abstract description 8
- HSCJRCZFDFQWRP-JZMIEXBBSA-N UDP-alpha-D-glucose Chemical compound O[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1OP(O)(=O)OP(O)(=O)OC[C@@H]1[C@@H](O)[C@@H](O)[C@H](N2C(NC(=O)C=C2)=O)O1 HSCJRCZFDFQWRP-JZMIEXBBSA-N 0.000 claims abstract description 6
- HSCJRCZFDFQWRP-UHFFFAOYSA-N Uridindiphosphoglukose Natural products OC1C(O)C(O)C(CO)OC1OP(O)(=O)OP(O)(=O)OCC1C(O)C(O)C(N2C(NC(=O)C=C2)=O)O1 HSCJRCZFDFQWRP-UHFFFAOYSA-N 0.000 claims abstract description 6
- 238000006243 chemical reaction Methods 0.000 claims description 43
- 101000946033 Mangifera indica UDP-glycosyltransferase 13 Proteins 0.000 claims description 16
- 239000013598 vector Substances 0.000 claims description 14
- VGEREEWJJVICBM-UHFFFAOYSA-N phloretin Chemical compound C1=CC(O)=CC=C1CCC(=O)C1=C(O)C=C(O)C=C1O VGEREEWJJVICBM-UHFFFAOYSA-N 0.000 claims description 12
- 241000894006 Bacteria Species 0.000 claims description 10
- ZWTDXYUDJYDHJR-UHFFFAOYSA-N (E)-1-(2,4-dihydroxyphenyl)-3-(2,4-dihydroxyphenyl)-2-propen-1-one Natural products OC1=CC(O)=CC=C1C=CC(=O)C1=CC=C(O)C=C1O ZWTDXYUDJYDHJR-UHFFFAOYSA-N 0.000 claims description 6
- YQHMWTPYORBCMF-UHFFFAOYSA-N Naringenin chalcone Natural products C1=CC(O)=CC=C1C=CC(=O)C1=C(O)C=C(O)C=C1O YQHMWTPYORBCMF-UHFFFAOYSA-N 0.000 claims description 6
- 239000008103 glucose Substances 0.000 claims description 6
- SLHBRIIHMDJIBT-UHFFFAOYSA-N 2-phenyl-1-(2,4,6-trihydroxyphenyl)ethanone Chemical compound OC1=CC(O)=CC(O)=C1C(=O)CC1=CC=CC=C1 SLHBRIIHMDJIBT-UHFFFAOYSA-N 0.000 claims description 5
- 239000013604 expression vector Substances 0.000 claims description 5
- WQZGKKKJIJFFOK-GASJEMHNSA-N Glucose Natural products OC[C@H]1OC(O)[C@H](O)[C@@H](O)[C@@H]1O WQZGKKKJIJFFOK-GASJEMHNSA-N 0.000 claims description 4
- 239000000411 inducer Substances 0.000 claims description 4
- 230000002194 synthesizing effect Effects 0.000 claims description 4
- 241000588724 Escherichia coli Species 0.000 claims description 3
- WHUUTDBJXJRKMK-UHFFFAOYSA-N Glutamic acid Natural products OC(=O)C(N)CCC(O)=O WHUUTDBJXJRKMK-UHFFFAOYSA-N 0.000 claims description 2
- CKLJMWTZIZZHCS-REOHCLBHSA-N L-aspartic acid Chemical group OC(=O)[C@@H](N)CC(O)=O CKLJMWTZIZZHCS-REOHCLBHSA-N 0.000 claims description 2
- ONIBWKKTOPOVIA-UHFFFAOYSA-N Proline Natural products OC(=O)C1CCCN1 ONIBWKKTOPOVIA-UHFFFAOYSA-N 0.000 claims description 2
- MTCFGRXMJLQNBG-UHFFFAOYSA-N Serine Chemical group OCC(N)C(O)=O MTCFGRXMJLQNBG-UHFFFAOYSA-N 0.000 claims description 2
- KZSNJWFQEVHDMF-UHFFFAOYSA-N Valine Chemical group CC(C)C(N)C(O)=O KZSNJWFQEVHDMF-UHFFFAOYSA-N 0.000 claims description 2
- 150000001413 amino acids Chemical group 0.000 claims description 2
- 235000003704 aspartic acid Nutrition 0.000 claims description 2
- OQFSQFPPLPISGP-UHFFFAOYSA-N beta-carboxyaspartic acid Natural products OC(=O)C(N)C(C(O)=O)C(O)=O OQFSQFPPLPISGP-UHFFFAOYSA-N 0.000 claims description 2
- 238000000855 fermentation Methods 0.000 claims description 2
- 230000004151 fermentation Effects 0.000 claims description 2
- 235000013305 food Nutrition 0.000 claims description 2
- 235000013922 glutamic acid Nutrition 0.000 claims description 2
- 239000004220 glutamic acid Substances 0.000 claims description 2
- ZDXPYRJPNDTMRX-UHFFFAOYSA-N glutamine Natural products OC(=O)C(N)CCC(N)=O ZDXPYRJPNDTMRX-UHFFFAOYSA-N 0.000 claims description 2
- 239000000348 glycosyl donor Substances 0.000 claims description 2
- 238000004519 manufacturing process Methods 0.000 claims description 2
- 239000004474 valine Chemical group 0.000 claims description 2
- ZDXPYRJPNDTMRX-VKHMYHEASA-N L-glutamine Chemical group OC(=O)[C@@H](N)CCC(N)=O ZDXPYRJPNDTMRX-VKHMYHEASA-N 0.000 claims 1
- WQZGKKKJIJFFOK-VFUOTHLCSA-N beta-D-glucose Chemical compound OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O WQZGKKKJIJFFOK-VFUOTHLCSA-N 0.000 claims 1
- 239000003814 drug Substances 0.000 claims 1
- 125000000291 glutamic acid group Chemical group N[C@@H](CCC(O)=O)C(=O)* 0.000 claims 1
- BPHPUYQFMNQIOC-NXRLNHOXSA-N isopropyl beta-D-thiogalactopyranoside Chemical compound CC(C)S[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O BPHPUYQFMNQIOC-NXRLNHOXSA-N 0.000 claims 1
- 125000003607 serino group Chemical group [H]N([H])[C@]([H])(C(=O)[*])C(O[H])([H])[H] 0.000 claims 1
- 125000002987 valine group Chemical group [H]N([H])C([H])(C(*)=O)C([H])(C([H])([H])[H])C([H])([H])[H] 0.000 claims 1
- 239000000758 substrate Substances 0.000 abstract description 16
- 102000004169 proteins and genes Human genes 0.000 abstract description 8
- 230000015572 biosynthetic process Effects 0.000 abstract description 5
- ZAPDKBIMAJSFOM-UHFFFAOYSA-N (2,4-dihydroxyphenyl)-(4-fluorophenyl)methanone Chemical compound OC1=CC(O)=CC=C1C(=O)C1=CC=C(F)C=C1 ZAPDKBIMAJSFOM-UHFFFAOYSA-N 0.000 abstract description 4
- 230000004048 modification Effects 0.000 abstract description 4
- 238000012986 modification Methods 0.000 abstract description 4
- 238000003786 synthesis reaction Methods 0.000 abstract description 3
- 230000003197 catalytic effect Effects 0.000 abstract description 2
- -1 glucoside compounds Chemical class 0.000 abstract description 2
- 229930182478 glucoside Natural products 0.000 abstract 1
- 239000000047 product Substances 0.000 description 33
- 229940088598 enzyme Drugs 0.000 description 28
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 21
- IAZDPXIOMUYVGZ-UHFFFAOYSA-N Dimethylsulphoxide Chemical compound CS(C)=O IAZDPXIOMUYVGZ-UHFFFAOYSA-N 0.000 description 15
- PEDCQBHIVMGVHV-UHFFFAOYSA-N Glycerine Chemical compound OCC(O)CO PEDCQBHIVMGVHV-UHFFFAOYSA-N 0.000 description 15
- 239000000126 substance Substances 0.000 description 11
- 230000000694 effects Effects 0.000 description 10
- 238000006206 glycosylation reaction Methods 0.000 description 10
- 238000004128 high performance liquid chromatography Methods 0.000 description 10
- 239000011734 sodium Substances 0.000 description 10
- 230000013595 glycosylation Effects 0.000 description 8
- 238000001819 mass spectrum Methods 0.000 description 8
- 239000002609 medium Substances 0.000 description 8
- LLBBBYLDTDJMNU-UHFFFAOYSA-N 1-(2,4-dihydroxyphenyl)propan-1-one Chemical compound CCC(=O)C1=CC=C(O)C=C1O LLBBBYLDTDJMNU-UHFFFAOYSA-N 0.000 description 6
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 description 6
- RAXXELZNTBOGNW-UHFFFAOYSA-N imidazole Natural products C1=CNC=N1 RAXXELZNTBOGNW-UHFFFAOYSA-N 0.000 description 6
- 235000018102 proteins Nutrition 0.000 description 6
- 238000011033 desalting Methods 0.000 description 5
- 229930182470 glycoside Natural products 0.000 description 5
- 238000004949 mass spectrometry Methods 0.000 description 5
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 4
- WXNRYSGJLQFHBR-UHFFFAOYSA-N bis(2,4-dihydroxyphenyl)methanone Chemical compound OC1=CC(O)=CC=C1C(=O)C1=CC=C(O)C=C1O WXNRYSGJLQFHBR-UHFFFAOYSA-N 0.000 description 4
- 239000007853 buffer solution Substances 0.000 description 4
- 238000009472 formulation Methods 0.000 description 4
- 150000002338 glycosides Chemical class 0.000 description 4
- BDAGIHXWWSANSR-UHFFFAOYSA-N methanoic acid Natural products OC=O BDAGIHXWWSANSR-UHFFFAOYSA-N 0.000 description 4
- 239000000203 mixture Substances 0.000 description 4
- 239000012071 phase Substances 0.000 description 4
- 239000011541 reaction mixture Substances 0.000 description 4
- 230000001954 sterilising effect Effects 0.000 description 4
- 239000001888 Peptone Substances 0.000 description 3
- 108010080698 Peptones Proteins 0.000 description 3
- 239000000872 buffer Substances 0.000 description 3
- 229940041514 candida albicans extract Drugs 0.000 description 3
- 229960005091 chloramphenicol Drugs 0.000 description 3
- WIIZWVCIJKGZOK-RKDXNWHRSA-N chloramphenicol Chemical compound ClC(Cl)C(=O)N[C@H](CO)[C@H](O)C1=CC=C([N+]([O-])=O)C=C1 WIIZWVCIJKGZOK-RKDXNWHRSA-N 0.000 description 3
- 239000008367 deionised water Substances 0.000 description 3
- 229910021641 deionized water Inorganic materials 0.000 description 3
- 229930027917 kanamycin Natural products 0.000 description 3
- 229960000318 kanamycin Drugs 0.000 description 3
- SBUJHOSQTJFQJX-NOAMYHISSA-N kanamycin Chemical compound O[C@@H]1[C@@H](O)[C@H](O)[C@@H](CN)O[C@@H]1O[C@H]1[C@H](O)[C@@H](O[C@@H]2[C@@H]([C@@H](N)[C@H](O)[C@@H](CO)O2)O)[C@H](N)C[C@@H]1N SBUJHOSQTJFQJX-NOAMYHISSA-N 0.000 description 3
- 229930182823 kanamycin A Natural products 0.000 description 3
- 235000019319 peptone Nutrition 0.000 description 3
- 238000000746 purification Methods 0.000 description 3
- 239000011780 sodium chloride Substances 0.000 description 3
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Chemical compound O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 3
- 239000012138 yeast extract Substances 0.000 description 3
- QKNYBSVHEMOAJP-UHFFFAOYSA-N 2-amino-2-(hydroxymethyl)propane-1,3-diol;hydron;chloride Chemical compound Cl.OCC(N)(CO)CO QKNYBSVHEMOAJP-UHFFFAOYSA-N 0.000 description 2
- OSWFIVFLDKOXQC-UHFFFAOYSA-N 4-(3-methoxyphenyl)aniline Chemical compound COC1=CC=CC(C=2C=CC(N)=CC=2)=C1 OSWFIVFLDKOXQC-UHFFFAOYSA-N 0.000 description 2
- WSVLPVUVIUVCRA-KPKNDVKVSA-N Alpha-lactose monohydrate Chemical compound O.O[C@@H]1[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]1O[C@@H]1[C@@H](CO)O[C@H](O)[C@H](O)[C@H]1O WSVLPVUVIUVCRA-KPKNDVKVSA-N 0.000 description 2
- 235000004936 Bromus mango Nutrition 0.000 description 2
- 241001093152 Mangifera Species 0.000 description 2
- 235000014826 Mangifera indica Nutrition 0.000 description 2
- 102000016943 Muramidase Human genes 0.000 description 2
- 108010014251 Muramidase Proteins 0.000 description 2
- 108010062010 N-Acetylmuramoyl-L-alanine Amidase Proteins 0.000 description 2
- 235000009184 Spondias indica Nutrition 0.000 description 2
- 238000001261 affinity purification Methods 0.000 description 2
- 238000004364 calculation method Methods 0.000 description 2
- 238000006555 catalytic reaction Methods 0.000 description 2
- 150000001875 compounds Chemical class 0.000 description 2
- 238000010276 construction Methods 0.000 description 2
- 238000001514 detection method Methods 0.000 description 2
- 235000019253 formic acid Nutrition 0.000 description 2
- 230000008014 freezing Effects 0.000 description 2
- 238000007710 freezing Methods 0.000 description 2
- 125000003147 glycosyl group Chemical group 0.000 description 2
- 239000005457 ice water Substances 0.000 description 2
- 239000007788 liquid Substances 0.000 description 2
- 229960000274 lysozyme Drugs 0.000 description 2
- 235000010335 lysozyme Nutrition 0.000 description 2
- 239000004325 lysozyme Substances 0.000 description 2
- AEDDIBAIWPIIBD-ZJKJAXBQSA-N mangiferin Chemical compound O[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1C1=C(O)C=C(OC=2C(=CC(O)=C(O)C=2)C2=O)C2=C1O AEDDIBAIWPIIBD-ZJKJAXBQSA-N 0.000 description 2
- 229930014626 natural product Natural products 0.000 description 2
- PXHVJJICTQNCMI-UHFFFAOYSA-N nickel Substances [Ni] PXHVJJICTQNCMI-UHFFFAOYSA-N 0.000 description 2
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- 238000010257 thawing Methods 0.000 description 2
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- TWCMVXMQHSVIOJ-UHFFFAOYSA-N Aglycone of yadanzioside D Natural products COC(=O)C12OCC34C(CC5C(=CC(O)C(O)C5(C)C3C(O)C1O)C)OC(=O)C(OC(=O)C)C24 TWCMVXMQHSVIOJ-UHFFFAOYSA-N 0.000 description 1
- PLMKQQMDOMTZGG-UHFFFAOYSA-N Astrantiagenin E-methylester Natural products CC12CCC(O)C(C)(CO)C1CCC1(C)C2CC=C2C3CC(C)(C)CCC3(C(=O)OC)CCC21C PLMKQQMDOMTZGG-UHFFFAOYSA-N 0.000 description 1
- 239000004215 Carbon black (E152) Substances 0.000 description 1
- KZSNJWFQEVHDMF-BYPYZUCNSA-N L-valine Chemical compound CC(C)[C@H](N)C(O)=O KZSNJWFQEVHDMF-BYPYZUCNSA-N 0.000 description 1
- YWQSXCGKJDUYTL-UHFFFAOYSA-N Mangiferin Natural products CC(CCC=C(C)C)C1CC(C)C2C3CCC4C(C)(C)CCCC45CC35CCC12C YWQSXCGKJDUYTL-UHFFFAOYSA-N 0.000 description 1
- 230000004989 O-glycosylation Effects 0.000 description 1
- VYPSYNLAJGMNEJ-UHFFFAOYSA-N Silicium dioxide Chemical compound O=[Si]=O VYPSYNLAJGMNEJ-UHFFFAOYSA-N 0.000 description 1
- 241001052560 Thallis Species 0.000 description 1
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- 230000009286 beneficial effect Effects 0.000 description 1
- 230000004071 biological effect Effects 0.000 description 1
- 239000003054 catalyst Substances 0.000 description 1
- 238000007036 catalytic synthesis reaction Methods 0.000 description 1
- 238000004440 column chromatography Methods 0.000 description 1
- 238000012258 culturing Methods 0.000 description 1
- 238000010511 deprotection reaction Methods 0.000 description 1
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- 238000010828 elution Methods 0.000 description 1
- 230000007613 environmental effect Effects 0.000 description 1
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- 239000007888 film coating Substances 0.000 description 1
- 238000009501 film coating Methods 0.000 description 1
- 238000001914 filtration Methods 0.000 description 1
- 108700014210 glycosyltransferase activity proteins Proteins 0.000 description 1
- 102000045442 glycosyltransferase activity proteins Human genes 0.000 description 1
- 239000001963 growth medium Substances 0.000 description 1
- 238000000703 high-speed centrifugation Methods 0.000 description 1
- PFOARMALXZGCHY-UHFFFAOYSA-N homoegonol Natural products C1=C(OC)C(OC)=CC=C1C1=CC2=CC(CCCO)=CC(OC)=C2O1 PFOARMALXZGCHY-UHFFFAOYSA-N 0.000 description 1
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- 238000011534 incubation Methods 0.000 description 1
- 238000002347 injection Methods 0.000 description 1
- 239000007924 injection Substances 0.000 description 1
- 238000011081 inoculation Methods 0.000 description 1
- 238000002955 isolation Methods 0.000 description 1
- 238000004811 liquid chromatography Methods 0.000 description 1
- 239000007791 liquid phase Substances 0.000 description 1
- 229940043357 mangiferin Drugs 0.000 description 1
- 230000035772 mutation Effects 0.000 description 1
- 239000002773 nucleotide Substances 0.000 description 1
- 125000003729 nucleotide group Chemical group 0.000 description 1
- 230000001766 physiological effect Effects 0.000 description 1
- 239000000843 powder Substances 0.000 description 1
- 125000001500 prolyl group Chemical group [H]N1C([H])(C(=O)[*])C([H])([H])C([H])([H])C1([H])[H] 0.000 description 1
- 238000001742 protein purification Methods 0.000 description 1
- 239000011535 reaction buffer Substances 0.000 description 1
- 230000035484 reaction time Effects 0.000 description 1
- 239000011347 resin Substances 0.000 description 1
- 229920005989 resin Polymers 0.000 description 1
- 239000000741 silica gel Substances 0.000 description 1
- 229910002027 silica gel Inorganic materials 0.000 description 1
- 239000000243 solution Substances 0.000 description 1
- 230000002269 spontaneous effect Effects 0.000 description 1
- 238000004659 sterilization and disinfection Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/10—Transferases (2.)
- C12N9/1048—Glycosyltransferases (2.4)
- C12N9/1051—Hexosyltransferases (2.4.1)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/70—Vectors or expression systems specially adapted for E. coli
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P19/00—Preparation of compounds containing saccharide radicals
- C12P19/18—Preparation of compounds containing saccharide radicals produced by the action of a glycosyl transferase, e.g. alpha-, beta- or gamma-cyclodextrins
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P19/00—Preparation of compounds containing saccharide radicals
- C12P19/44—Preparation of O-glycosides, e.g. glucosides
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y204/00—Glycosyltransferases (2.4)
- C12Y204/01—Hexosyltransferases (2.4.1)
- C12Y204/01047—N-Acylsphingosine galactosyltransferase (2.4.1.47)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2800/00—Nucleic acids vectors
- C12N2800/10—Plasmid DNA
- C12N2800/101—Plasmid DNA for bacteria
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12R—INDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
- C12R2001/00—Microorganisms ; Processes using microorganisms
- C12R2001/01—Bacteria or Actinomycetales ; using bacteria or Actinomycetales
- C12R2001/185—Escherichia
- C12R2001/19—Escherichia coli
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- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Biomedical Technology (AREA)
- Molecular Biology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Medicinal Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Plant Pathology (AREA)
- Enzymes And Modification Thereof (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
Abstract
The invention discloses a method for generating C-glycoside by biocatalysis, belonging to the technical field of bioengineering. The glycosyltransferase is engineered through protein engineering to obtain mutants with higher yield and regioselectivity, the obtained mutant QDP is used as a biocatalyst, BP-2, 4-dihydroxypropiophenone, 4-fluoro-2 ',4' -dihydroxybenzophenone or 4' -hydroxyphenylheptanone are used as acceptor substrates, UDP-glucose is used as donor substrates, and the corresponding C-glucoside modification products are synthesized in a catalytic manner, so that the method has application value in the aspect of the synthesis of glucoside compounds.
Description
Technical Field
The invention relates to a method for generating C-glycoside by biological catalysis, belonging to the technical field of biological engineering.
Background
Glycosides are a class of compounds that are widely found in nature, with diverse structures and wide range of physiological activities. The biological activity of the compounds is determined by glycosyl groups in the structure to a great extent, so that a method capable of catalyzing glycosylation of corresponding aglycone with high efficiency is developed, and the method is a focus of attention of organic chemists and pharmaceutical chemists. The glycosylation reaction in natural product biosynthesis is catalyzed by glycosyltransferases (GTs; EC 2.4.) which catalyze the transfer of sugar molecules from an activated glycosyl donor to a substrate acceptor, and directly construct the glycosylation product in a simple manner in one step, avoiding the lengthy protection-deprotection steps in chemical methods, so that the enzymes are widely accepted by scientists as powerful glycosylation tools.
Most glycoside natural products are O-glycosylation modification products, and besides glycoside compounds also comprise C-, N-, S-glycosylation products. From a chemical point of view, the C-glycoside imparts a longer in vivo half-life to the corresponding glycosylation product due to its remarkable resistance to spontaneous, acid and enzyme-catalyzed hydrolysis. However, the presence of relatively few GTs in nature that have the activity of catalyzing the formation of C-glycosidic bonds, and the range of substrates identified is relatively narrow, and the catalytic efficiency is mostly relatively low, which limits their practical application.
Disclosure of Invention
The invention aims to improve productivity and chemoselectivity by modifying glycosyltransferase MicGT derived from Indian mango (Mangiferandica) through protein engineering means. The invention provides a method for synthesizing different C-glucosides by biocatalysis by utilizing glycosyltransferase mutant QDP (E152Q/V190D/S122P). The method has the advantages of mild condition, environmental friendliness, catalytic synthesis of glycosylated products with different chemical selectivities and the like.
The first object of the invention is to provide a glycosyltransferase MiCGT mutant QDP, which is characterized in that 152 th mutant glutamic acid of an amino acid sequence shown in SEQ ID NO.1 is glutamine, 190 th valine is aspartic acid, and 122 th serine is proline.
In one embodiment of the invention, the nucleotide sequence encoding the glycosyltransferase is shown in SEQ ID NO. 2.
A second object of the present invention is to provide a gene encoding the above glycosyltransferase MiCGT mutant QDP.
It is a third object of the present invention to provide an expression vector containing the gene.
In one embodiment of the invention, the expression vector includes, but is not limited to, pET series vectors, pRSF series vectors, or pCDF series vectors.
The fourth object of the present invention is to provide a genetically engineered bacterium expressing the mutant.
In one embodiment of the invention, the host cell of the genetically engineered bacterium includes, but is not limited to, E.coli.
In one embodiment of the present invention, the construction of the genetically engineered bacterium specifically includes the following steps: and (3) connecting a gene encoding the mutant with a vector by taking pET28a as the vector, and recombining and expressing the glycosyltransferase mutant in E.coli BL21 (DE 3).
In one embodiment of the invention, the components of the fermentation medium are: TB medium, inducer is 4-6g/L alpha-lactose monohydrate, preferably the temperature is 18-25 ℃, the rotating speed is 160-200 rpm, and the expression time is 18-20h.
In one embodiment of the invention, about 0.05% glucose is added at the time of inoculation.
In one embodiment of the invention, the protein purification of the genetically engineered bacterium specifically comprises the following steps: collecting the expressed thalli by a precooling centrifuge, washing with a buffer solution twice, adding a small amount of lysozyme, quick freezing with liquid nitrogen, thawing with ice water bath, ultrasonic crushing, centrifuging at high speed, and adopting His-nickel column affinity purification and desalting by a desalting column.
It is a fifth object of the present invention to provide a method for synthesizing various C-glycosides using the glycosyltransferase MiCGT mutant QDP of the present invention.
In one embodiment of the present invention, the method is performed in a range of 40-60mM NaH 2 PO 4 -Na 2 HPO 4 In the buffer system, enzyme amount of 40-100 μg/100 μl or corresponding whole cells (OD 600nm =40-60), pH=7.0-8.0, acceptor substrate concentration 0.1-5mM, UDP-glucose concentration 0.1-10mM or 2% glucose at 30-40 ℃, reactionThe rotation speed is 800-1200rpm, and the reaction time is 2-6h.
The sixth object of the present invention is to provide the use of the mutant, or the gene, or the vector, or the genetically engineered bacterium, or the method for producing the mutant, or the method for synthesizing C-glycoside in the fields of food, pharmaceutical, etc.
The beneficial effects are that:
the invention uses glycosyltransferase MiCGT from Indian mango (Mangiferandica) to produce mangiferin, and carries out protein engineering modification, and the obtained mutant QDP (E152Q/V190D/S122P) is used as a biocatalyst to catalyze BP-2, 4-dihydroxypropiophenone, phloretin or 2-phenyl-2 ',4',6' -trihydroxyacetophenone to generate a corresponding C-glucoside modified product.
(1) Compared with the wild enzyme MiCGT, the mutant QDP (E152Q/V190D/S122P) can obtain the C-glucoside modified product with high chemical selectivity, the conversion rate is improved to over 99 percent from nearly 3 percent, TON is improved to 10375 from 136, the specific enzyme activity is improved to 939.4U/mg from 135.8U/mg, and gram-scale preparation (1.2 g) of the C-glucoside modified product with high chemical selectivity is realized in a 1.5L reaction system.
(2) 2, 4-dihydroxypropiophenone is used as a substrate, a C-glucoside modified product with high chemical selectivity can be obtained, and the conversion rate is improved from <3% to 54%; the phloretin is used as a substrate, a C-glucoside modified product with high chemical selectivity can be obtained, and the conversion rate is improved from 17% to more than 99%; the 2-phenyl-2 ',4',6' -trihydroxyacetophenone is used as a substrate, so that a C-glucoside modified product with high chemical selectivity can be obtained, and the conversion rate is improved from 11% to over 99%.
Drawings
Fig. 1: HPLC chromatogram (A) and bar graph (B) of the reaction mixture of BP-2 with mutant QDP and wild-type of glycosyltransferase MiCGT.
Fig. 2: primary mass spectrum and secondary mass spectrum of products 1a and 1b generated by the reaction of BP-2 and mutant QDP; a) 1a MS; b) 1a MS 2 The method comprises the steps of carrying out a first treatment on the surface of the C) 1 b; d) 1b MS 2 。
Fig. 3: HPLC chromatograms (A) and bar charts (B) of the reaction mixtures of 2, 4-dihydroxypropiophenone with mutant QDP and wild-type of glycosyltransferase MiCGT.
Fig. 4: primary mass spectrum and secondary mass spectrum of products 2a and 2b generated by the reaction of 2, 4-dihydroxypropiophenone and mutant QDP; a) 2a MS; b) 2a MS 2 The method comprises the steps of carrying out a first treatment on the surface of the C) 2b MS; d) 2b MS 2 。
Fig. 5: HPLC chromatogram (A) and bar graph (B) of the reaction mixture of phloretin and mutant QDP and wild type of glycosyltransferase MiCGT.
Fig. 6: primary mass spectrum and secondary mass spectrum of products 3a and 3b generated by the reaction of phloretin and mutant QDP; a) 3a MS; b) 3a MS 2 The method comprises the steps of carrying out a first treatment on the surface of the C) 3b MS; d) 3b MS 2 。
Fig. 7: HPLC chromatograms (A) and bar charts (B) of the reaction mixtures of 2-phenyl-2 ',4',6' -trihydroxyacetophenone with mutant QDP and wild-type glycosyltransferase MiCGT.
Fig. 8: primary mass spectrum and secondary mass spectrum of products 4a and 4b generated by the reaction of 2-phenyl-2 ',4',6' -trihydroxyacetophenone and mutant QDP; a) 4a MS; b) MS of 4a 2 The method comprises the steps of carrying out a first treatment on the surface of the C) 4b MS; d) 4b MS 2 。
Detailed Description
The chemicals used in the present invention are commercially available.
The medium formulation used in the examples is as follows:
solid medium formulation (1L): 5g of yeast extract, 10g of peptone, 10g of sodium chloride and 15g of agar, and sterilizing by deionized water and high-pressure steam.
LB medium formulation (1L): 5g of yeast extract powder, 10g of peptone and 10g of sodium chloride, and sterilizing by deionized water and high-pressure steam.
TB Medium formulation (1L): 24g of yeast extract, 12g of peptone and 4mL of glycerol. Adding 900mL deionized water, sterilizing with high pressure steam after dissolution, and adding 100mL 0.17MKH after the same sterilization 2 PO 4 /0.72MK 2 HPO 4 Is a solution of (a) and (b). ( And (3) injection: sodium chloride was purchased from Alatine and the remainder from Biotechnology Co., ltd )
The product analysis method comprises the following steps: high performance liquid chromatography and mass spectrometry. The corresponding liquid phase detection method is a 5-mu mC18 column, the PDA detector, the mobile phase is: phase A (H) 2 O contained 0.1% formic acid) and phase B (methanol contained 0.1% formic acid). The gradient elution procedure was: 10-50% B8min, 50-85% B2min,85% B3min, 80-10% B7min.
Conversion number (TurnoverNumber, TON) definition: indicating the number of catalytic reactions per unit time, per unit active site, or the number of target products formed or the number of reactants consumed at a given temperature, pressure, reactant ratio and degree of reaction.
Conversion number (TurnoverNumber, TON) calculation: at 50mM NaH 2 PO 4 -Na 2 HPO 4 To (pH 8.0), 3/4/5mM of the substrate and purified MiCGT mutants QDP were added at different concentrations, respectively, at 0.1. Mu.M, 0.2. Mu.M, 0.5. Mu.M, 1. Mu.M, 2. Mu.M, 3. Mu.M, and reacted at 40℃for 24 hours in a total volume of 100. Mu.L. The reaction was terminated by adding 300. Mu.L of glacial methanol, and detected by liquid chromatography. TON is calculated as the amount of substrate converted/amount of enzyme.
Enzymatic activity assay of glycosyltransferase: the activity of the glycosyltransferase was determined in 200. Mu.L of reaction buffer, which included 6mM DP-glucose, 50mM NaH 2 PO 4 -Na 2 HPO 4 (pH 8.0) and about 1. Mu.g of the mutant purified enzyme. Incubation was carried out at 50℃for 5 minutes, after which the reaction was stopped by adding the same volume of methanol and analyzed by HPLC. One unit of enzyme activity is defined as the amount of enzyme that consumes 1. Mu. Mol of acceptor substrate or generates 1. Mu. Mol of product for 1 min.
Protein content detection: protein absorption at 280nm was measured using a Nano-300 micro-spectrophotometer.
Calculating the specific enzyme activity: specific activity=1u· (mg protein) -1 =1 μmol· (min mg protein) -1 。
Calculation of conversion: conversion = amount of converted feedstock/total amount of feedstock 100%.
Example 1: glycosyltransferase MiCGT protein engineering
(1) Design and preparation of mutants:
the gene with the sequence shown as SEQ ID NO.2 is taken as a template, primers are designed, and mutation is carried out on the position points S122, E152 and V190, so that the coding gene of the QDP (E152Q/V190D/S122P) mutant is obtained.
TABLE 1QDP mutant primers
(2) Construction of recombinant plasmids:
using commercial VazymeThe coding gene of the mutant prepared in the step (1) is connected with a pET28a vector by a MultiSOneStepclaning kit to obtain a recombinant vector pET28a-MiCGT mutant Specific steps are shown in the specification. The wild type gene shown in SEQ ID NO.2 is connected with a pET28a vector by the same method to obtain a recombinant vector pET28a-MiCGT.
Example 2: expression purification of glycosyltransferase MiCGT mutant QDP
The recombinant vector pET28a-MiCGT constructed in example 1 mutant And pET28a-MiCGT are respectively transformed into competent cells Rosetta-gamiB (DE 3) through chemical transformation, a proper amount of bacterial liquid is taken to be coated on a solid culture medium containing kanamycin and chloramphenicol, and the culture is carried out for 12-15h at 37 ℃. Single colonies containing the transformed recombinant plasmid were picked up separately into LB medium (containing 35. Mu.gmL) -1 Chloramphenicol and 50. Mu.gmL -1 Kanamycin), and incubated overnight at 37 ℃.1% LB cultures were inoculated into TB medium (containing 35. Mu.g mL) -1 Chloramphenicol, 50. Mu.gmL -1 Kanamycin and 0.05% glucose sterilized by film coating), then culturing at 37 ℃ until the growth logarithmic phase, namely OD value is 0.6-0.8, adding 5g/L alpha-lactose monohydrate as inducer, and transferring to 25 ℃ and expressing for 18-20h under the condition of 160 rpm.
The expressed cells were collected with a centrifuge pre-chilled at 4℃and treated with 50mM NaH (pH=8.0) containing 10% glycerol 2 PO 4 -Na 2 HPO 4 Washing with buffer solution twice, adding small amount of lysozyme, and collecting solutionQuick freezing with nitrogen, thawing in ice water bath, ultrasonic crushing, high speed centrifugation, affinity purification with His-nickel column (eluting the protein with 50mM Tris-HCl buffer containing 10% glycerol and 80mM imidazole, eluting the target protein with 50mM Tris-HCl buffer containing 10% glycerol and 500mM imidazole), and desalting with desalting column (desalting buffer is 50mM NaH containing 10% glycerol) 2 PO 4 -Na 2 HPO 4 Buffer solution). The specific activity of the mutant QDP to BP-2 is 939.4U/mg, the specific activity of the wild enzyme to BP-2 is 135.8U/mg, and the specific activity of the QDP is improved by 7 times compared with the specific activity of the wild enzyme to BP-2. The mutant QDP was determined to have a TON of 10375 for BP-2, 136 for the wild-type enzyme and 76-fold higher than the TON of BP-2 for the wild-type enzyme.
Example 3: glycosyltransferase MiCGT and mutant QDP thereof for catalyzing BP-2 to synthesize C-glucoside
In a 100. Mu.L reaction system, UDP-glucose was at a concentration of 4mM, substrate 2,2', 4' -tetrahydroxybenzophenone (BP-2) was at a concentration of 3mM,50mM NaH 2 PO 4 -Na 2 HPO 4 (pH 8.0), DMSO (v/v, 5%), final concentration of biocatalyst pure enzyme mutant QDP was 54. Mu.g, and the corresponding glycosylation product was obtained by 2h reaction at 30℃with wild enzyme as control. The reaction was terminated by adding 3 volumes of glacial methanol, and analyzed by high performance liquid chromatography and mass spectrometry.
As can be seen from FIGS. 1 and 2, the mutant QDP catalyzes BP-2 to obtain a C-glucoside product with a conversion rate of >99%. And the wild enzyme obtains a more mixed glycoside product, and the conversion rate is 3%. The mutant has higher chemical selectivity than the wild enzyme and greatly improves the conversion rate.
1.1g of substrate 2,2', 4' -tetrahydroxybenzophenone (BP-2) 50mM NaH in a 1.5L reaction system 2 PO 4 -Na 2 HPO 4 (pH 8.0), DMSO (v/v, 5%), biocatalyst is whole cell containing mutant QDP, and final catalyst concentration is OD 600 =40, reacted at 30 ℃ for 24h. Subsequently, the sample was centrifuged at 4,000g for 5 minutes and the supernatant was collected. With 20ml ddH 2 The cells were washed and centrifuged 2 times. Filtering supernatant, performing primary purification and concentration by macroporous resin column chromatography, and performing silica gel column chromatographyFurther purification and isolation gave 1.2g of C-glycoside product.
Example 4: glycosyltransferase MiCGT and mutant QDP thereof for catalyzing 2, 4-dihydroxypropiophenone to synthesize C-glucoside
In a 100. Mu.L reaction system, UDP-glucose was at a concentration of 4mM, substrate 2, 4-dihydroxypropiophenone was at a concentration of 3mM,50mM NaH 2 PO 4 -Na 2 HPO 4 (pH 8.0), DMSO (v/v, 5%), final concentration of biocatalyst pure enzyme mutant QDP was 54. Mu.g, and the corresponding glycosylation product was obtained by 2h reaction at 30℃with wild enzyme as control. The reaction was terminated by adding 3 volumes of glacial methanol, and analyzed by high performance liquid chromatography and mass spectrometry.
As can be seen from FIGS. 3 and 4, the mutant QDP catalyzes 2, 4-dihydroxypropiophenone to obtain a C-glucoside product with a conversion rate of 54%. And the wild enzyme obtains more mixed glycoside products, and the conversion rate is less than 3%. The mutant has higher chemical selectivity than the wild enzyme and greatly improves the conversion rate.
Example 5: glycosyltransferase MiCGT and mutant QDP thereof for catalyzing synthesis of C-glucoside by 4-fluoro-2 ',4' -dihydroxybenzophenone
In a 100. Mu.L reaction system, UDP-glucose was at a concentration of 4mM, substrate phloretin (4-fluoro-2 ',4' -dihydroxybenzophenone) was at a concentration of 3mM,50mM NaH 2 PO 4 -Na 2 HPO 4 (pH 8.0), DMSO (v/v, 5%), final concentration of biocatalyst pure enzyme mutant QDP was 54. Mu.g, and the corresponding glycosylation product was obtained by 2h reaction at 30℃with wild enzyme as control. The reaction was terminated by adding 3 volumes of glacial methanol, and analyzed by high performance liquid chromatography and mass spectrometry.
As can be seen from fig. 5 and 6, the mutant QDP catalyzes 4-fluoro-2 ',4' -dihydroxybenzophenone to obtain C-glucoside product with a conversion rate of >99%. Whereas the wild-type enzyme can give a C-glucoside product, the conversion is only 17%. Compared with wild enzyme, the mutant can obtain products with different chemoselectivities, and the conversion rate is greatly improved.
Example 6: glycosyltransferase MiCGT and mutant QDP thereof for catalyzing synthesis of C-glucoside by 4' -hydroxy-phenylheptanone
U in 100. Mu.L of the reaction systemDP-glucose concentration was 4mM, substrate 4' -hydroxyphenylheptanone concentration was 3mM,50mM NaH 2 PO 4 -Na 2 HPO 4 (pH 8.0), DMSO (v/v, 5%), final concentration of biocatalyst pure enzyme mutant QDP was 54. Mu.g, and reaction at 30℃for 2h gave the corresponding glycosylation product. The reaction was terminated by adding 3 volumes of glacial methanol, and analyzed by high performance liquid chromatography and mass spectrometry.
As can be seen from FIGS. 7 and 8, the mutant QDP catalyzes 4' -hydroxyphenylheptanone to obtain a C-glucoside product, and the conversion rate is more than 99%. Whereas the wild-type enzyme can give a C-glucoside product, the conversion is only 11%. Compared with wild enzyme, the mutant can obtain products with different chemoselectivities, and the conversion rate is greatly improved.
While the invention has been described with reference to the preferred embodiments, it is not limited thereto, and various changes and modifications can be made therein by those skilled in the art without departing from the spirit and scope of the invention as defined in the appended claims.
Claims (8)
1. A mutant of glycosyltransferase MiCGT, characterized in that glutamic acid at position 152 of the amino acid sequence shown in SEQ ID No.1 is mutated to glutamine, valine at position 190 is mutated to aspartic acid, and serine at position 122 is mutated to proline.
2. A gene encoding the mutant of claim 1.
3. An expression vector comprising the gene of claim 2, wherein the expression vector comprises a pET series vector, a pRSF series vector, or a pCDF series vector.
4. The genetically engineered bacterium expressing the mutant of claim 1, wherein the host cell of the genetically engineered bacterium comprises escherichia coli.
5. A method for producing the mutant according to claim 1, wherein the genetically engineered bacterium according to claim 4 is fermented.
6. The method of claim 5, wherein an inducer is added during the fermentation process, the inducer being 4-alpha-lactose or IPTG.
7. A method for synthesizing C-glycoside, characterized in that UDP-glucose or glucose is used as glycosyl donor, the mutant of claim 1 or the genetically engineered bacterium of claim 4 is used as biocatalyst, and BP-2, 4-dihydroxypropiophenone, phloretin or 2-phenyl-2 ',4',6' -trihydroxyacetophenone is used as acceptor for reaction.
8. The mutant according to claim 1, the gene according to claim 2, the expression vector according to claim 3, the genetically engineered bacterium according to claim 4, the method according to claim 5 or 6, or the use of the method according to claim 7 in the fields of food, pharmaceuticals and the like.
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