CN114958856B - Application of long-chain non-coding RNA CYP1B1-AS1 AS breast cancer biomarker and treatment target - Google Patents
Application of long-chain non-coding RNA CYP1B1-AS1 AS breast cancer biomarker and treatment target Download PDFInfo
- Publication number
- CN114958856B CN114958856B CN202210733639.5A CN202210733639A CN114958856B CN 114958856 B CN114958856 B CN 114958856B CN 202210733639 A CN202210733639 A CN 202210733639A CN 114958856 B CN114958856 B CN 114958856B
- Authority
- CN
- China
- Prior art keywords
- cyp1b1
- breast cancer
- coding rna
- chain non
- long
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
- 206010006187 Breast cancer Diseases 0.000 title claims abstract description 71
- 208000026310 Breast neoplasm Diseases 0.000 title claims abstract description 70
- 108091027963 non-coding RNA Proteins 0.000 title claims abstract description 22
- 102000042567 non-coding RNA Human genes 0.000 title claims abstract description 22
- 238000011282 treatment Methods 0.000 title abstract description 11
- 239000000107 tumor biomarker Substances 0.000 title description 4
- 230000002018 overexpression Effects 0.000 claims abstract description 26
- 241000713666 Lentivirus Species 0.000 claims abstract description 16
- 230000035945 sensitivity Effects 0.000 claims abstract description 14
- 230000010473 stable expression Effects 0.000 claims abstract description 13
- 239000013604 expression vector Substances 0.000 claims abstract description 12
- 239000003814 drug Substances 0.000 claims abstract description 10
- 239000002246 antineoplastic agent Substances 0.000 claims abstract description 8
- 239000002773 nucleotide Substances 0.000 claims abstract description 7
- 125000003729 nucleotide group Chemical group 0.000 claims abstract description 7
- 238000002360 preparation method Methods 0.000 claims abstract description 6
- 239000013598 vector Substances 0.000 claims description 14
- DQLATGHUWYMOKM-UHFFFAOYSA-L cisplatin Chemical compound N[Pt](N)(Cl)Cl DQLATGHUWYMOKM-UHFFFAOYSA-L 0.000 claims description 8
- 229960004316 cisplatin Drugs 0.000 claims description 8
- 229940044683 chemotherapy drug Drugs 0.000 claims description 7
- 241000700605 Viruses Species 0.000 claims description 6
- 238000004806 packaging method and process Methods 0.000 claims description 6
- 239000002245 particle Substances 0.000 claims description 3
- 230000014509 gene expression Effects 0.000 abstract description 23
- 238000003745 diagnosis Methods 0.000 abstract description 15
- 238000004393 prognosis Methods 0.000 abstract description 12
- 229940079593 drug Drugs 0.000 abstract description 5
- 239000003550 marker Substances 0.000 abstract description 5
- 230000003827 upregulation Effects 0.000 abstract description 5
- 230000003211 malignant effect Effects 0.000 abstract description 3
- 230000009466 transformation Effects 0.000 abstract description 3
- 238000001415 gene therapy Methods 0.000 abstract description 2
- 230000006872 improvement Effects 0.000 abstract description 2
- 229940127089 cytotoxic agent Drugs 0.000 abstract 1
- 210000004027 cell Anatomy 0.000 description 57
- 210000001519 tissue Anatomy 0.000 description 20
- 238000001514 detection method Methods 0.000 description 15
- 206010028980 Neoplasm Diseases 0.000 description 12
- 108091046869 Telomeric non-coding RNA Proteins 0.000 description 11
- 108020004414 DNA Proteins 0.000 description 10
- 108091032973 (ribonucleotides)n+m Proteins 0.000 description 9
- 238000004458 analytical method Methods 0.000 description 8
- 238000010609 cell counting kit-8 assay Methods 0.000 description 8
- 238000006243 chemical reaction Methods 0.000 description 8
- 230000000694 effects Effects 0.000 description 8
- 108090000623 proteins and genes Proteins 0.000 description 8
- 108010087230 Sincalide Proteins 0.000 description 7
- 201000011510 cancer Diseases 0.000 description 7
- 238000000034 method Methods 0.000 description 7
- 239000000047 product Substances 0.000 description 7
- IZTQOLKUZKXIRV-YRVFCXMDSA-N sincalide Chemical compound C([C@@H](C(=O)N[C@@H](CCSC)C(=O)NCC(=O)N[C@@H](CC=1C2=CC=CC=C2NC=1)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H](CC=1C=CC=CC=1)C(N)=O)NC(=O)[C@@H](N)CC(O)=O)C1=CC=C(OS(O)(=O)=O)C=C1 IZTQOLKUZKXIRV-YRVFCXMDSA-N 0.000 description 7
- 238000003753 real-time PCR Methods 0.000 description 6
- 238000002474 experimental method Methods 0.000 description 5
- 238000010839 reverse transcription Methods 0.000 description 5
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 4
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 4
- 102100031181 Glyceraldehyde-3-phosphate dehydrogenase Human genes 0.000 description 4
- 238000000540 analysis of variance Methods 0.000 description 4
- 230000009286 beneficial effect Effects 0.000 description 4
- 230000022131 cell cycle Effects 0.000 description 4
- 239000003153 chemical reaction reagent Substances 0.000 description 4
- 108020004445 glyceraldehyde-3-phosphate dehydrogenase Proteins 0.000 description 4
- 239000000463 material Substances 0.000 description 4
- 239000012980 RPMI-1640 medium Substances 0.000 description 3
- 230000008827 biological function Effects 0.000 description 3
- 238000004113 cell culture Methods 0.000 description 3
- 230000004663 cell proliferation Effects 0.000 description 3
- 210000000349 chromosome Anatomy 0.000 description 3
- 238000000605 extraction Methods 0.000 description 3
- 239000012091 fetal bovine serum Substances 0.000 description 3
- 239000007788 liquid Substances 0.000 description 3
- 239000013642 negative control Substances 0.000 description 3
- 239000013612 plasmid Substances 0.000 description 3
- 238000012545 processing Methods 0.000 description 3
- 102000004169 proteins and genes Human genes 0.000 description 3
- 238000011160 research Methods 0.000 description 3
- 238000007619 statistical method Methods 0.000 description 3
- 238000011144 upstream manufacturing Methods 0.000 description 3
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 3
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 2
- 108010064439 Cytochrome P450 Family 1 Proteins 0.000 description 2
- 102000015211 Cytochrome P450 Family 1 Human genes 0.000 description 2
- KFZMGEQAYNKOFK-UHFFFAOYSA-N Isopropanol Chemical compound CC(C)O KFZMGEQAYNKOFK-UHFFFAOYSA-N 0.000 description 2
- 238000011529 RT qPCR Methods 0.000 description 2
- 108091081021 Sense strand Proteins 0.000 description 2
- 238000002835 absorbance Methods 0.000 description 2
- 230000003321 amplification Effects 0.000 description 2
- 239000008346 aqueous phase Substances 0.000 description 2
- 230000008901 benefit Effects 0.000 description 2
- 230000015572 biosynthetic process Effects 0.000 description 2
- 238000005119 centrifugation Methods 0.000 description 2
- 230000008859 change Effects 0.000 description 2
- 238000002512 chemotherapy Methods 0.000 description 2
- 238000003776 cleavage reaction Methods 0.000 description 2
- 238000010367 cloning Methods 0.000 description 2
- 230000003021 clonogenic effect Effects 0.000 description 2
- 239000002299 complementary DNA Substances 0.000 description 2
- 239000003184 complementary RNA Substances 0.000 description 2
- 238000011161 development Methods 0.000 description 2
- 238000011534 incubation Methods 0.000 description 2
- 238000002347 injection Methods 0.000 description 2
- 239000007924 injection Substances 0.000 description 2
- 108020004999 messenger RNA Proteins 0.000 description 2
- 239000000203 mixture Substances 0.000 description 2
- 238000003199 nucleic acid amplification method Methods 0.000 description 2
- 230000035755 proliferation Effects 0.000 description 2
- RXWNCPJZOCPEPQ-NVWDDTSBSA-N puromycin Chemical compound C1=CC(OC)=CC=C1C[C@H](N)C(=O)N[C@H]1[C@@H](O)[C@H](N2C3=NC=NC(=C3N=C2)N(C)C)O[C@@H]1CO RXWNCPJZOCPEPQ-NVWDDTSBSA-N 0.000 description 2
- 238000003757 reverse transcription PCR Methods 0.000 description 2
- 230000007017 scission Effects 0.000 description 2
- 238000012216 screening Methods 0.000 description 2
- 239000000243 solution Substances 0.000 description 2
- 239000012192 staining solution Substances 0.000 description 2
- 239000006228 supernatant Substances 0.000 description 2
- 230000004083 survival effect Effects 0.000 description 2
- 238000012360 testing method Methods 0.000 description 2
- 230000001225 therapeutic effect Effects 0.000 description 2
- 108020005544 Antisense RNA Proteins 0.000 description 1
- 108091003079 Bovine Serum Albumin Proteins 0.000 description 1
- 102100027417 Cytochrome P450 1B1 Human genes 0.000 description 1
- 239000006144 Dulbecco’s modified Eagle's medium Substances 0.000 description 1
- 101000725164 Homo sapiens Cytochrome P450 1B1 Proteins 0.000 description 1
- 108020005198 Long Noncoding RNA Proteins 0.000 description 1
- 206010061309 Neoplasm progression Diseases 0.000 description 1
- 239000012807 PCR reagent Substances 0.000 description 1
- 229930040373 Paraformaldehyde Natural products 0.000 description 1
- 238000002123 RNA extraction Methods 0.000 description 1
- 238000000692 Student's t-test Methods 0.000 description 1
- 206010066901 Treatment failure Diseases 0.000 description 1
- 229920004890 Triton X-100 Polymers 0.000 description 1
- 239000013504 Triton X-100 Substances 0.000 description 1
- 102000004142 Trypsin Human genes 0.000 description 1
- 108090000631 Trypsin Proteins 0.000 description 1
- 238000001793 Wilcoxon signed-rank test Methods 0.000 description 1
- 230000000692 anti-sense effect Effects 0.000 description 1
- 230000033228 biological regulation Effects 0.000 description 1
- 239000012472 biological sample Substances 0.000 description 1
- 239000000090 biomarker Substances 0.000 description 1
- 238000004364 calculation method Methods 0.000 description 1
- 231100000504 carcinogenesis Toxicity 0.000 description 1
- 238000003783 cell cycle assay Methods 0.000 description 1
- 238000001516 cell proliferation assay Methods 0.000 description 1
- 239000007795 chemical reaction product Substances 0.000 description 1
- 238000009643 clonogenic assay Methods 0.000 description 1
- 231100000096 clonogenic assay Toxicity 0.000 description 1
- 238000010276 construction Methods 0.000 description 1
- 238000003235 crystal violet staining Methods 0.000 description 1
- 239000012228 culture supernatant Substances 0.000 description 1
- 238000012258 culturing Methods 0.000 description 1
- 230000003831 deregulation Effects 0.000 description 1
- 201000010099 disease Diseases 0.000 description 1
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 1
- 231100000673 dose–response relationship Toxicity 0.000 description 1
- 238000001035 drying Methods 0.000 description 1
- 238000004043 dyeing Methods 0.000 description 1
- 238000005516 engineering process Methods 0.000 description 1
- 238000011156 evaluation Methods 0.000 description 1
- 238000000684 flow cytometry Methods 0.000 description 1
- 230000002068 genetic effect Effects 0.000 description 1
- 238000010353 genetic engineering Methods 0.000 description 1
- 230000036541 health Effects 0.000 description 1
- 239000000815 hypotonic solution Substances 0.000 description 1
- 230000002401 inhibitory effect Effects 0.000 description 1
- 238000013345 light-cycler PCR Methods 0.000 description 1
- 239000002502 liposome Substances 0.000 description 1
- 239000006166 lysate Substances 0.000 description 1
- 230000036210 malignancy Effects 0.000 description 1
- 230000007246 mechanism Effects 0.000 description 1
- 239000002609 medium Substances 0.000 description 1
- 238000002844 melting Methods 0.000 description 1
- 230000008018 melting Effects 0.000 description 1
- 238000011880 melting curve analysis Methods 0.000 description 1
- 238000002156 mixing Methods 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 238000011242 molecular targeted therapy Methods 0.000 description 1
- 229910052757 nitrogen Inorganic materials 0.000 description 1
- 230000025308 nuclear transport Effects 0.000 description 1
- 239000012074 organic phase Substances 0.000 description 1
- 229920002866 paraformaldehyde Polymers 0.000 description 1
- 230000008506 pathogenesis Effects 0.000 description 1
- 239000008188 pellet Substances 0.000 description 1
- 239000012071 phase Substances 0.000 description 1
- 239000002504 physiological saline solution Substances 0.000 description 1
- 230000004481 post-translational protein modification Effects 0.000 description 1
- 239000002244 precipitate Substances 0.000 description 1
- 230000001376 precipitating effect Effects 0.000 description 1
- 230000008569 process Effects 0.000 description 1
- XJMOSONTPMZWPB-UHFFFAOYSA-M propidium iodide Chemical compound [I-].[I-].C12=CC(N)=CC=C2C2=CC=C(N)C=C2[N+](CCC[N+](C)(CC)CC)=C1C1=CC=CC=C1 XJMOSONTPMZWPB-UHFFFAOYSA-M 0.000 description 1
- 238000012342 propidium iodide staining Methods 0.000 description 1
- 229950010131 puromycin Drugs 0.000 description 1
- 230000001105 regulatory effect Effects 0.000 description 1
- 239000000523 sample Substances 0.000 description 1
- 230000019491 signal transduction Effects 0.000 description 1
- 239000001509 sodium citrate Substances 0.000 description 1
- NLJMYIDDQXHKNR-UHFFFAOYSA-K sodium citrate Chemical compound O.O.[Na+].[Na+].[Na+].[O-]C(=O)CC(O)(CC([O-])=O)C([O-])=O NLJMYIDDQXHKNR-UHFFFAOYSA-K 0.000 description 1
- 239000002904 solvent Substances 0.000 description 1
- 239000000126 substance Substances 0.000 description 1
- 238000012353 t test Methods 0.000 description 1
- 238000002076 thermal analysis method Methods 0.000 description 1
- 230000035897 transcription Effects 0.000 description 1
- 238000013518 transcription Methods 0.000 description 1
- 238000013519 translation Methods 0.000 description 1
- 230000014616 translation Effects 0.000 description 1
- 239000012588 trypsin Substances 0.000 description 1
- 230000005751 tumor progression Effects 0.000 description 1
- 238000005406 washing Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P15/00—Drugs for genital or sexual disorders; Contraceptives
- A61P15/14—Drugs for genital or sexual disorders; Contraceptives for lactation disorders, e.g. galactorrhoea
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/85—Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
- C12N15/86—Viral vectors
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N5/00—Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
- C12N5/06—Animal cells or tissues; Human cells or tissues
- C12N5/0602—Vertebrate cells
- C12N5/0625—Epidermal cells, skin cells; Cells of the oral mucosa
- C12N5/0631—Mammary cells
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N5/00—Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
- C12N5/06—Animal cells or tissues; Human cells or tissues
- C12N5/0602—Vertebrate cells
- C12N5/0693—Tumour cells; Cancer cells
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/5005—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells
- G01N33/5008—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells for testing or evaluating the effect of chemical or biological compounds, e.g. drugs, cosmetics
- G01N33/5011—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells for testing or evaluating the effect of chemical or biological compounds, e.g. drugs, cosmetics for testing antineoplastic activity
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/10—Type of nucleic acid
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2510/00—Genetically modified cells
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2740/00—Reverse transcribing RNA viruses
- C12N2740/00011—Details
- C12N2740/10011—Retroviridae
- C12N2740/15011—Lentivirus, not HIV, e.g. FIV, SIV
- C12N2740/15041—Use of virus, viral particle or viral elements as a vector
- C12N2740/15043—Use of virus, viral particle or viral elements as a vector viral genome or elements thereof as genetic vector
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2800/00—Nucleic acids vectors
- C12N2800/10—Plasmid DNA
- C12N2800/106—Plasmid DNA for vertebrates
- C12N2800/107—Plasmid DNA for vertebrates for mammalian
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/106—Pharmacogenomics, i.e. genetic variability in individual responses to drugs and drug metabolism
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/118—Prognosis of disease development
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/178—Oligonucleotides characterized by their use miRNA, siRNA or ncRNA
Landscapes
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Chemical & Material Sciences (AREA)
- Biomedical Technology (AREA)
- Genetics & Genomics (AREA)
- Organic Chemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- General Health & Medical Sciences (AREA)
- General Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Physics & Mathematics (AREA)
- Medicinal Chemistry (AREA)
- Cell Biology (AREA)
- Pharmacology & Pharmacy (AREA)
- Veterinary Medicine (AREA)
- Biophysics (AREA)
- Pathology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Public Health (AREA)
- Analytical Chemistry (AREA)
- Animal Behavior & Ethology (AREA)
- Hematology (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- Plant Pathology (AREA)
- General Chemical & Material Sciences (AREA)
- Oncology (AREA)
- Urology & Nephrology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Dermatology (AREA)
- Epidemiology (AREA)
- Toxicology (AREA)
- Tropical Medicine & Parasitology (AREA)
- Virology (AREA)
Abstract
The invention discloses long-chain non-coding RNA CYP1B1-AS1, the nucleotide sequence of which is shown AS SEQ ID NO. 1. The invention also discloses a CYP1B1-AS1 lentivirus over-expression vector, a lentivirus stable expression cell strain and application thereof in preparing a breast cancer diagnosis kit, a medicament for preventing or treating breast cancer or a prognosis product. CYP1B1-AS1 can obviously down-regulate expression in breast cancer, and can be used AS a diagnosis marker of the breast cancer. The expression level of CYP1B1-AS1 is related to prognosis of patients, and can be used AS a prognosis marker of breast cancer. Up-regulating CYP1B1-AS1 can inhibit malignant progress of breast cancer cells, and has application value AS a gene therapy target. Upregulation of CYP1B1-AS1 expression can increase sensitivity of breast cancer cells to chemotherapeutic agents. The invention can be used for the preparation of products such as diagnosis and treatment related to breast cancer, improvement of targeted drug sensitivity and the like, and has a certain clinical transformation prospect.
Description
Technical Field
The invention belongs to the technical field of tumor molecular biology, and relates to application of long-chain non-coding RNA CYP1B1-AS1 AS a breast cancer diagnosis and prognosis biomarker and a treatment target.
Background
Breast cancer is the first malignancy in global incidence and is the leading cause of cancer death in women. The incidence rate of breast cancer in China is continuously increased, and the final treatment failure of patients is often caused by lack of timely and effective diagnosis and treatment. Therefore, the development mechanism of breast cancer is deeply explored, a new diagnosis and treatment target is searched, the application value is mined, and the clinical transformation potential is unprecedented.
Recent research results show that long non-coding RNA (lncRNA) with the length of more than 200nt can interact with DNA, RNA or protein, participate in important regulation and control such as chromosome modification, transcription, nuclear transport, translation, post-translational modification and the like, act on various cell signal transduction pathways and participate in the whole process of tumor progression. Deregulation of LncRNA expression is one of the characteristic changes of the human cancer transcriptome, possessing the potential to be a tumor biomarker and therapeutic target molecule.
The invention relies on Jiangsu province tumor hospitals, and the applicant bears a plurality of national and provincial natural science foundation projects related to tumors, and accumulates rich research experience of tumor related molecular markers. In recent years, genetic engineering techniques have rapidly progressed in tumor research, and genetic diagnosis and molecular targeted therapy have shown great advantages in the clinic of various malignant tumors. Therefore, the pathogenesis of the breast cancer is deeply known, the effect of the related molecular markers in the disease development is clear, and a foundation can be laid for the individual and accurate diagnosis and treatment of the breast cancer.
Disclosure of Invention
The invention aims to: the technical problem to be solved by the invention is to provide long-chain non-coding RNA CYP1B1-AS1 beneficial to breast cancer diagnosis and treatment, and the application potential of the lncRNA CYP1B1-AS1 in solving the clinical situation of breast cancer is disclosed.
The invention also solves the technical problem of providing an application of CYP1B1-AS1 lentivirus over-expression vector and lentivirus stable expression cell strain in preparing a breast cancer diagnosis kit, a medicament for preventing or treating breast cancer or a prognosis product.
The invention also solves the technical problem of providing a fluorescent quantitative PCR detection kit.
The technical scheme is as follows: in order to solve the technical problems, the invention provides long-chain non-coding RNA CYP1B1-AS1, and the nucleotide sequence of the long-chain non-coding RNA CYP1B1-AS1 is shown AS SEQ ID NO. 1.
The CYP1B1-AS1 gene is all called: cytochrome P450 family 1 subfamily B member 1-anti RNA 1, located on chromosome 2 sense strand, is 1776nt in length and carries a polyA tail.
Seq ID NO.1
>NR_027252.1Homo sapiens CYP1B1 antisense RNA 1(CYP1B1-AS1),long non-coding RNA
The invention also comprises biological functions of CYP1B1-AS1 in breast cancer cells, and discloses application value of the CYP1B1-AS1 serving AS a molecular therapeutic target.
The invention also comprises a CYP1B1-AS1 lentiviral overexpression vector, wherein the CYP1B1-AS1 lentiviral overexpression vector contains the long-chain non-coding RNA CYP1B1-AS1.
The invention also comprises a lentivirus stable expression cell strain, wherein the lentivirus stable expression cell strain is obtained by packaging the CYP1B1-AS1 lentivirus over-expression vector into virus particles to infect host cells.
Wherein the host cell is an MCF7 or MDA-MB-231 cell.
The invention up-regulates the expression of CYP1B1-AS1 in breast cancer cell strains MCF7 and MDA-MB-231 through a lentivirus over-expression vector, and confirms that the up-regulates CYP1B1-AS1 inhibits the malignant progress of breast cancer cells through a cell proliferation experiment, a clone formation experiment, a flow cell cycle detection and the like.
The invention also discloses application of the long-chain non-coding RNA CYP1B1-AS1 serving AS a breast cancer diagnosis marker.
The invention also comprises the application of the long-chain non-coding RNA CYP1B1-AS1, the CYP1B1-AS1 lentivirus over-expression vector and the lentivirus stable expression cell strain in preparing a breast cancer diagnosis kit, a medicament for preventing or treating breast cancer or a prognosis product.
The invention also discloses a fluorescent quantitative PCR detection kit, which comprises a specific primer pair, wherein the primer pair sequences of the specific primer pair are SEQ ID NO.2 and SEQ ID NO.3.
The detection kit also comprises a reverse transcription reagent and a real-time fluorescent quantitative PCR reagent, and a preparation for detecting the CYP1B1-AS1 expression level in breast cancer tissues by using the real-time fluorescent quantitative PCR.
The detection kit further comprises an internal reference GAPDH primer pair, and the sequence of the internal reference GAPDH primer pair is shown as SEQ ID NO.4 and SEQ ID NO. 5.
The CYP1B1-AS1 detection primers used for real-time fluorescence quantitative PCR are AS follows:
CYP1B1-AS1:
SEQ ID NO.2:Forward Primer(5’to3’)
SEQ ID NO.3:Forward Primer(5’to3’)
internal reference GAPDH:
SEQ ID NO.4:Forward Primer(5’to3’)
SEQ ID NO.5:Forward Primer(5’to3’)
the invention also discloses application of the long-chain non-coding RNA CYP1B1-AS1, the CYP1B1-AS1 lentivirus over-expression vector and the lentivirus stable expression cell strain in preparing a product for improving sensitivity of breast cancer cells to chemotherapy.
The CYP1B1-AS1 lentiviral overexpression vector is LV 6-homoCYP 1B1-AS1 recombinant plasmid, and is constructed by Shanghai Ji Ma pharmaceutical technology Co.
The sequences of the primers used for constructing the CYP1B1-AS1 lentiviral overexpression vector plus the cleavage sites NotI and NsiI are AS follows:
SEQ ID NO.6:Forward Primer(5’to3’)
SEQ ID NO.7:Forward Primer(5’to3’)
the invention also comprises a cell strain which is obtained by packaging the lentiviral recombinant vector LV 6-homoCYP 1B1-AS1 and then infecting cells to obtain stable expression.
The invention utilizes the slow virus over-expression vector to up-regulate CYP1B1-AS1, which is beneficial to improving the sensitivity of breast cancer cells to common chemotherapeutic drugs cisplatin.
Wherein the application treats breast cancer cells by adding different concentrations of cisplatin, and then determining the influence of CYP1B1-AS1 on the chemotherapeutic drug sensitivity of the cancer cells by adding CCK-8.
Wherein the concentration of cisplatin is 25 μg/mL,12.5 μg/mL,6.25 μg/mL,3.13 μg/mL,1.56 μg/mL,0.78 μg/mL.
The beneficial effects are that: compared with the prior art, the invention has the following advantages:
1. the invention discovers that CYP1B1-AS1 can obviously down-regulate expression in breast cancer for the first time, and can be used AS a diagnosis marker of the breast cancer.
2. The invention discloses that the expression level of CYP1B1-AS1 is related to prognosis of patients for the first time, and can be used AS a prognosis marker of breast cancer.
3. The invention definitely up-regulates CYP1B1-AS1 for the first time, can inhibit malignant progress of breast cancer cells, and has application value AS a gene therapy target.
4. The invention proves for the first time that up-regulating the expression of CYP1B1-AS1 can improve the sensitivity of breast cancer cells to chemotherapeutics.
In conclusion, the invention can be used for the preparation of products such as diagnosis, treatment, targeted drug sensitivity improvement and the like related to breast cancer, and has a certain clinical transformation prospect.
Drawings
FIG. 1 thermal analysis of detection results of lncRNA chip of breast cancer tissue. And (3) injection: t, tumor tissue, N, paracancerous normal tissue.
FIG. 2TCGA data analyze CYP1B1-AS1 expression in breast cancer.
FIG. 3NCBI database shows structural features of CYP1B1-AS1.
FIG. 4LNCipedia database analyzes CYP1B1-AS1 encoding ability and conservation.
FIG. 5 is a graph showing the evaluation of the value of CYP1B1-AS1 detection in combination with clinical breast cancer tissue samples.
FIG. 6 is a graph showing the relationship between CYP1B1-AS1 expression level and prognosis of breast cancer patients.
FIG. 7 biological function study of CYP1B1-AS1. A. qPCR detects the effect of up-regulating expression of CYP1B1-AS1 in breast cancer cells. B. The CCK-8 assay detects the effect of upregulation of CYP1B1-AS1 on proliferation capacity of breast cancer cells. C. The clonogenic assay detects the effect of upregulation of CYP1B1-AS1 on the clonogenic capacity of breast cancer cells. D. Flow cytometric analysis up-regulates the effects of CYP1B1-AS1 on breast cancer cell cycle. And (3) injection: breast cancer cells that up-regulate CYP1B1-AS1 expression and negative controls thereof are labeled MCF7-exp, MCF7-NC and MDA-231-exp, MDA-231-NC, respectively.
FIG. 8 effects of over-expression of CYP1B1-AS1 on drug sensitivity of breast cancer cells.
Detailed Description
Embodiments of the present invention will be described in detail below with reference to examples, but it will be understood by those skilled in the art that the following examples are only for illustrating the present invention and should not be construed as limiting the scope of the present invention. The specific conditions are not noted in the examples and are carried out according to conventional conditions or conditions recommended by the manufacturer. The reagents or apparatus used were conventional products commercially available without the manufacturer's attention.
EXAMPLE 1 lncRNA chip detection of differentially expressed lncRNA-CYP1B1-AS1 in breast cancer tissue
1. Experimental materials and methods
The ethical committee approved that 6 breast cancer tissues and paracancerous normal tissues were selected from the biological sample library, and the expression profile of lncRNA and mRNA in the tissues was detected using an Arraystar human lncRNA chip, which was completed by Shanghai health biosystems. The chip was able to detect 40,173 lncRNA and 20,730 protein-encoding transcripts. Through analysis by Genespring GX v12.1 software and through Quantile standardization, the differential expression lncRNAs or differential expression mRNAs with statistical significance between two groups of samples are screened by Fold change more than or equal to 2.0, and P is less than 0.05.
2. Experimental results
In the embodiment, by taking a paracancerous normal tissue AS a control, fold change is more than or equal to 2, P is less than 0.05 AS a screening index, CYP1B1-AS1 is found to be significantly down-regulated in breast cancer tissues, and GEPIA2 analysis of cancer genome map (the Cancer Genome Atlas, TCGA) data shows that: CYP1B1-AS1 down-regulates expression in breast cancer (FIGS. 1, 2). CYP1B1-AS1 is an antisense lncRNA with a polyA tail, located on the sense strand of chromosome 2, 1776nt in length and carrying a polyA tail. CYP1B1-AS1 does not possess the ability to encode proteins (FIGS. 3, 4).
Example 2 application of CYP1B1-AS1 detection in preparation of Breast cancer diagnosis and prognosis products
1. Experimental materials and methods
1.1 Breast cancer tissue sample collection
30 cases of primary breast cancer and paracancerous normal tissue samples were collected, approved by the ethical committee, and immediately preserved with liquid nitrogen until RNA extraction.
1.2RNA extraction, reverse transcription and qPCR reactions
Extraction Using Trizol reagent (Invitrogen)Total RNA in cells, total number of cells of single extracted RNA is not less than 10 6 And OD is used 260/280 Detection of RNA purity, when OD 260/280 Between 1.9 and 2.1, can be used for subsequent detection.
cDNA was synthesized using 1. Mu.g total RNA using PrimeScript RT kit (TaKaRa) and stored at-20℃for later use. The primers for CYP1B1-AS1 are AS follows: an upstream primer: 5'-ACTGGTATGACCACCCGAGA-3'; a downstream primer: 5'-ACTGGCATACTGGTCACTGC-3', tm=60℃. The primers for the internal reference GAPDH were as follows, the upstream primer: 5'-ATGGGTGTGAACCATGAGAA-3'; a downstream primer: 5'-GTGCTAAGCAGTTGGTGGTG-3', tm=60℃. Primers were synthesized by Shanghai Biotechnology.
Real-time fluorescent quantitative PCR detection and melting curve analysis were performed using a LightCycler PCR apparatus from Roche, USA, using TB from TakaraPremix Ex Taq TM II, performing PCR reaction by using a kit, amplifying 40 cycles by using a two-step method, collecting fluorescent signals, analyzing an amplification curve and a melting curve by using self-contained software of an instrument, calculating a cycle threshold (Ct), and using 2 -ΔΔCt The expression level of the relative gene is obtained by calculation.
The specific operation and reaction system are as follows:
1.2.1RNA extraction
(1) Trizol was added to the tissue samples at 50-100 mg/mL. The cells were completely lysed and transferred to a centrifuge tube after being homogenized thoroughly with an electric homogenizer for about 1-2 min.
(2) Into the centrifuge tube containing the lysate, 0.2mL of chloroform (0.2 mL of chloroform was added to 1mL of Trizol) was added, and the mixture was thoroughly mixed by shaking on a shaker for 20s and left at room temperature for 5min.
(3) Centrifugation at 12000rpm for 10min at 4℃and then pipetting the total RNA-containing upper aqueous phase into a new centrifuge tube, about 0.5mL of upper aqueous phase per mL of Trizol. The uptake of DNA and proteins from the organic phase and the middle layer should be avoided.
(4) Adding isopropanol with the same volume as the upper water phase, reversing for mixing for several times, and precipitating at room temperature for 5min. Centrifuge at 12000rpm at 4℃for 15min.
(5) The supernatant was discarded, 1mL of 75% ethanol was added per mL of Trizol, and the mixture was gently inverted and mixed to wash the RNA pellet twice. Centrifuging at 12000rpm and 4 ℃ for 2min, discarding the liquid, and reversely airing at room temperature.
(6) An appropriate amount of DEPC-treated water was added to dissolve the RNA precipitate. Stored at-80 ℃.
1.2.2 reverse transcription:
(1) removal of genomic DNA
Reaction conditions: 42 ℃,2min,4 ℃ and preserving.
(2) Reverse transcription reaction:
the reaction product was added to the following reagents:
the reaction condition is 37 ℃ for 15min;85 ℃,5s;4 ℃, and preserving.
1.2.3PCR amplification:
the reverse transcription cDNA was aspirated at 2. Mu.L and the following reaction system was added:
1.3Kaplan-Meier Plotter analysis of CYP1B1-AS1 expression versus prognosis in breast cancer patients.
1.4 data processing and analysis
Wilcoxon signed rank test was used to compare breast cancer tissue with paracancerous normal tissue samples. Statistical analysis was performed using GraphPad Prism 8.0 software. P values less than 0.05 are considered statistically significant (×p < 0.05, ×p < 0.01, ×p < 0.001).
2. Experimental results
In this example, CYP1B1-AS1 in 30 breast cancer tissues and paracancerous normal tissues was detected by RT-PCR, and CYP1B1-AS1 in the cancer tissues was found to be significantly lower than that in the paracancerous normal tissues, and the subject operating profile (receiver operating characteristic curve, ROC) showed an area under the curve (area under the ROC curve, AUC) of 0.909, [95% confidence interval: 0.839-0.979, P < 0.001], suggesting that CYP1B1-AS1 detection has higher diagnostic value (FIG. 5).
In addition, kaplan-Meier Plotter analysis showed that: the high recurrence-free survival Rate (RFS) and the high total survival rate (OS) of the patients with the breast cancer with the CYP1B1-AS1 expression show that the application value of the patients with the breast cancer is used AS a clinical prognosis factor of the breast cancer (figure 6).
Example 3 biological Functions of CYP1B1-AS1 in breast cancer cells
1. Experimental materials and methods
1.1 cell culture
Breast cancer cell lines MCF7 and MDA-MB-231 were purchased from the Shanghai cell bank of the national academy of sciences and cultured according to ATCC protocol: MCF7 cells were cultured in RPMI 1640 containing 10% fetal bovine serum and incubated at 37℃with 5% CO 2 In an incubator. MDA-MB-231 cells were cultured using L-15 containing 10% FBS, and placed in an air incubator at 37 ℃.293T cells were purchased from Shanghai cell Bank, china academy of sciences and cultured with DMEM containing 10% FBS.
1.2 establishment of lentiviral Stable expression cell lines
A stable expression cell line of CYP1B1-AS1 was established by using a lentiviral overexpression vector (LV 6, shanghai Ji Ma pharmaceutical technologies Co., ltd.): the sequences of the primers for amplifying the target gene homoCYP1B1-AS1 plus the cleavage sites NotI and NsiI are AS follows: an upstream primer: 5'-AGGGTTCCAAGCTTAAGCGGCCGCCAACTATGGTTGCTAACACAAGAATCGGCA-3', downstream primer: 5'-GATCCATCCCTAGGTAGATGCATTTTTTTTTTTTTTTTTTTTTTTTTTATTAAACTG-3', tm=55 ℃; cloning a target gene Homo CYP1B1-AS1 into a lentiviral overexpression vector (LV 6, shanghai Ji Ma pharmaceutical technology Co., ltd.) to obtain an LV6-Homo CYP1B1-AS1 recombinant plasmid (H2470-2), transfecting 293T cells with the lentiviral overexpression vector LV6-Homo CYP1B1-AS1 recombinant plasmid and the lentiviral overexpression vector LV6 (negative control) respectively by using liposome Lipofectamine 3000 (Invitrogen) for virus packaging, collecting virus liquid in cell culture supernatant after 72 hours, respectively infecting MCF7 and MDA-MB-231 cells, adding 10 mug/mL of puromycin for screening after 48 hours, and obtaining MCF7 and MDA-MB-231 cells stably expressing CYP1B1-AS1 and negative controls thereof (marked AS MCF7-exp, MCF 7-MDA-231-exp and MDA-231-NC respectively). The construction and packaging of lentiviral expression vectors was completed by Shanghai Ji Ma pharmaceutical technologies. The effect of over-expression of CYP1B1-AS1 was examined using the RT-PCR method in example 2, and the results are shown in FIG. 7A.
1.3 cell proliferation assay
The proliferation potency of MCF7-exp, MCF7-NC and MDA-231-exp, MDA-231-NC cells was examined using CCK-8. The treated test cells were spread in 96-well plates (3X 10 per well) 3 And 2) were incubated for 2 hours with 10% CCK-8 in the medium at 0h, 24h,48h,72h and 96h, respectively, and absorbance was measured at a wavelength of 450 nm. CCK-8 was purchased from the Japan same Coulter chemical institute.
1.4 cloning experiments
MCF7-exp, MCF7-NC and MDA-231-exp, MDA-231-NC cells were seeded in six-well plates containing 2mL of RPMI 1640 (MCF 7) or L-15 (MDA-MB-231) culture solution at a gradient density of 300, 500, 800 cells, respectively, and gently rotated to disperse the cells uniformly. Culturing in a cell culture incubator for 1-2 weeks. When macroscopic clones appeared in the dishes, the supernatant was discarded and washed 2 times with PBS. Cells were fixed by adding 5mL of 4% paraformaldehyde for 15min. Removing the fixing solution, adding a proper amount of crystal violet staining solution for dyeing for 20min, then slowly washing the staining solution with flowing water, drying, and observing the cell clone formation condition under a microscope.
1.5 cell cycle detection
Cell cycle analysis was performed using propidium iodide staining: MCF7-exp, MCF7-NC and MDA-231-exp, MDA-231-NC cells were digested with trypsin, washed with PBS, and fixed with 70% ethanol at-20 ℃. After centrifugation, the cells were incubated in a hypotonic solution containing 50. Mu.g/mL propidium iodide, 0.1% sodium citrate, 0.1% Triton X-100 and 20. Mu.g/mL for 30min at 37 ℃. The cells were then analyzed in linear mode using a flow cytometer.
1.6 data processing and analysis
t-test and analysis of variance (analysis of variance, ANOVA) were used for the inter-group comparison. Statistical analysis was performed using GraphPad Prism 8.0 software. P values less than 0.05 are considered statistically significant (×p < 0.05, ×p < 0.01).
2. Experimental results
The lentiviral overexpression vector in this example can stably up-regulate CYP1B1-AS1 expression in breast cancer cells MCF7 and MDA-MB-231. Cell proliferation experiments, clonogenic experiments and flow-through cell cycle assays showed that upregulation of CYP1B1-AS1 expression was effective in inhibiting cell proliferation (FIG. 7).
Example 5 application of CYP1B1-AS1 in preparation of products for increasing sensitivity of breast cancer cells to chemotherapy
1. Experimental materials and methods
1.1 drug sensitivity test
MCF7-exp, MCF7-NC and MDA-231-exp, MDA-231-NC cells were used at 5X 10 per well 3 Cisplatin (dissolved in physiological saline) was added to the cells at various concentrations (25. Mu.g/mL, 12.5. Mu.g/mL, 6.25. Mu.g/mL, 3.13. Mu.g/mL, 1.56. Mu.g/mL, 0.78. Mu.g/mL) after incubation for 24 h. An equal volume of solvent was added as a control group with drug concentration of 0. After 48h of treatment, the culture broth was replaced with 100. Mu.L of a reaction broth containing 10% CCK-8 (10% CCK-8 was prepared in RPMI 1640 or L-15 broth, respectively, as-prepared), absorbance was measured at a wavelength of 450nm after incubation for 3h, and a dose-response curve was drawn.
1.2 data processing and analysis
ANOVA was used for group-to-group comparisons and statistical analysis was performed using GraphPad Prism8 software. P values less than 0.05 are considered statistically significant (×p < 0.05, ×p < 0.01).
2. Experimental results
In this example we treated breast cancer cells with different concentrations of cisplatin and the activity of the cells was measured by adding CCK-8, which indicated that up-regulation of CYP1B1-AS1 expression was beneficial in increasing the sensitivity of breast cancer cells to chemotherapeutic drugs (figure 8).
Sequence listing
<110> Jiangsu province tumor Hospital
<120> application of long-chain non-coding RNA CYP1B1-AS1 AS breast cancer biomarker and treatment target
<160> 7
<170> SIPOSequenceListing 1.0
<210> 1
<211> 1776
<212> DNA
<213> CYP1B1-AS1 Gene (Cytochrome P450 family 1 subfamily B member 1-anti sense RNA 1)
<400> 1
caactatggt tgctaacaca agaatcggca ctggtgactt ttgagccatc aatcatcctt 60
tcctaacaca tgaatctttt ggaaaatggt ctcaaatagt caagaccccc tgctgggagg 120
agcttctatc ctgctctgtg gaagaaatgg gcatgccaga tgcctggaag atcagaggct 180
cacattccag ttcaaagtta gagaaacctg agaggggtgt actggtatga ccacccgaga 240
tcccatcgct gagaaagata atggccctgg agacaaagac tgatgaagaa agacagtatc 300
cagctgtgat gcagatgaaa catgcggcat ggttgcactc actatgcagc caaggctgga 360
agccactctg gatccagcca ctctggcaca gcgttcttgc tctaggaaga acaactgaac 420
atggccacac aggcctcaca gctggcatat ggaggctgtt aataagctga gcttgaggct 480
tcaaaggact cttgtagcct gtgctggatc tagcagtgac cagtatgcca gtggccatgg 540
atgcccaggc ccatgttcag tagtgaagca ggtgctagca gcagaagcaa tagaaatgga 600
aactgggaga tctgctgtgg atgaatctca ttatcttctt tctctgaccc tctttggact 660
aaataaactc ccagtattct tgaccaacag aggtagggtt ggaacagaac ctcaaaagtc 720
atcattagac ttcctactaa tagggcattg gaagttcaag cgactaacta ggaaacaggt 780
tagtatttgt acccctacac tgtgcaacag attacatacc atttgctcta tttggcatcc 840
tttccttagg ctagattccc agaagaaaga ttactgattc gaagggcatg aacattttta 900
tgactcttgg cctaaattac taggccaagg ttttttcaaa gggatgcact aattttcact 960
atttccccac accctttcag gtgataaata attgacttga tttgtttaca ctgacgccaa 1020
gaattcttgg gaagaaggat caaagtgaaa agtggtagcc catggtgggg aggccacact 1080
cagtgcagtt gtgaagtcag cagcattttt aagcccattc attgccagta gccctgagat 1140
gagcattccc aagctgcttc ccaggtccct cctccactct ctcagggaca tccattctgt 1200
accagccccc tcagatactc atgcccttgc cctcccttct ccatgctcat taaaaccagc 1260
ttaagagcag atatgacatc agtcacttac cttttcgtgt ggctctaaat caaagtgtca 1320
cctctcccaa gcacatgctt gcatcttagc tctgattgag gaatgaaaag ctttgttctc 1380
tgttaaaaga actttgagct tagatgcccc agactgagaa atccaccaaa agctggacct 1440
ttgacttgag cggcaaagga cccccatagt caggctgtga tttgaggagc atcaagaggc 1500
cagagtttcc aagttgggac ccagaaggtg gggttggcag ggggagggta ggagcagctg 1560
gagactctgc tctaccaggg gaatacggag gtggggacca atcccagggt aaggaatgaa 1620
agtaggagcc ccagaagctg aaaacatact tcaccgatgt cagcatttta cccagagcca 1680
ttccaaggtg accataactc acttaaaagc ctgaaagctg ttttatgcca actaataaag 1740
tgcagtttaa taaaaaaaaa aaaaaaaaaa aaaaaa 1776
<210> 2
<211> 20
<212> DNA
<213> Artificial sequence (Artificial Sequence)
<400> 2
actggtatga ccacccgaga 20
<210> 3
<211> 20
<212> DNA
<213> Artificial sequence (Artificial Sequence)
<400> 3
actggcatac tggtcactgc 20
<210> 4
<211> 20
<212> DNA
<213> Artificial sequence (Artificial Sequence)
<400> 4
atgggtgtga accatgagaa 20
<210> 5
<211> 20
<212> DNA
<213> Artificial sequence (Artificial Sequence)
<400> 5
gtgctaagca gttggtggtg 20
<210> 6
<211> 54
<212> DNA
<213> Artificial sequence (Artificial Sequence)
<400> 6
agggttccaa gcttaagcgg ccgccaacta tggttgctaa cacaagaatc ggca 54
<210> 7
<211> 57
<212> DNA
<213> Artificial sequence (Artificial Sequence)
<400> 7
gatccatccc taggtagatg catttttttt tttttttttt ttttttttat taaactg 57
Claims (5)
- The application of the CYP1B1-AS1 lentiviral overexpression vector in preparing a medicament for treating breast cancer is characterized in that the CYP1B1-AS1 lentiviral overexpression vector contains long-chain non-coding RNA CYP1B1-AS1, and the nucleotide sequence of the long-chain non-coding RNA CYP1B1-AS1 is shown AS SEQ ID NO. 1.
- 2. The application of a lentivirus stable expression cell strain in preparing a medicament for treating breast cancer is that the lentivirus stable expression cell strain is obtained by packaging a CYP1B1-AS1 lentivirus over-expression vector into virus particle infected cells, wherein the CYP1B1-AS1 lentivirus over-expression vector contains long-chain non-coding RNA CYP1B1-AS1, and the nucleotide sequence of the long-chain non-coding RNA CYP1B1-AS1 is shown AS SEQ ID NO. 1.
- 3. The application of long-chain non-coding RNA CYP1B1-AS1 in preparing a product for improving the sensitivity of breast cancer cells to a chemotherapeutic drug is characterized in that the nucleotide sequence of the long-chain non-coding RNA CYP1B1-AS1 is shown AS SEQ ID NO.1, and the chemotherapeutic drug is cisplatin.
- The application of CYP1B1-AS1 lentiviral overexpression vector in preparation of a product for improving sensitivity of breast cancer cells to chemotherapeutics is characterized in that the CYP1B1-AS1 lentiviral overexpression vector contains long-chain non-coding RNA CYP1B1-AS1, the nucleotide sequence of the long-chain non-coding RNA CYP1B1-AS1 is shown AS SEQ ID NO.1, and the chemotherapeutics is cisplatin.
- 5. The application of a lentiviral stable expression cell strain in preparing a product for improving sensitivity of breast cancer cells to a chemotherapeutic drug is that the lentiviral stable expression cell strain is obtained by packaging a CYP1B1-AS1 lentiviral over-expression vector into virus particle infected cells, wherein the CYP1B1-AS1 lentiviral over-expression vector contains long-chain non-coding RNA CYP1B1-AS1, the nucleotide sequence of the long-chain non-coding RNA CYP1B1-AS1 is shown AS SEQ ID NO.1, and the chemotherapeutic drug is cisplatin.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202210733639.5A CN114958856B (en) | 2022-06-24 | 2022-06-24 | Application of long-chain non-coding RNA CYP1B1-AS1 AS breast cancer biomarker and treatment target |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202210733639.5A CN114958856B (en) | 2022-06-24 | 2022-06-24 | Application of long-chain non-coding RNA CYP1B1-AS1 AS breast cancer biomarker and treatment target |
Publications (2)
Publication Number | Publication Date |
---|---|
CN114958856A CN114958856A (en) | 2022-08-30 |
CN114958856B true CN114958856B (en) | 2024-01-26 |
Family
ID=82965579
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202210733639.5A Active CN114958856B (en) | 2022-06-24 | 2022-06-24 | Application of long-chain non-coding RNA CYP1B1-AS1 AS breast cancer biomarker and treatment target |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN114958856B (en) |
Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN114627970A (en) * | 2022-03-15 | 2022-06-14 | 中南大学湘雅医院 | Prognosis model of scorching-related lncRNA of colon adenocarcinoma and construction method and application thereof |
-
2022
- 2022-06-24 CN CN202210733639.5A patent/CN114958856B/en active Active
Patent Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN114627970A (en) * | 2022-03-15 | 2022-06-14 | 中南大学湘雅医院 | Prognosis model of scorching-related lncRNA of colon adenocarcinoma and construction method and application thereof |
Non-Patent Citations (5)
Title |
---|
GenBank Accession:NR_027252.1.Homo sapiens CYP1B1 antisense RNA 1 (CYP1B1-AS1), long non-coding RNA.《GenBank》.2020, * |
Homo sapiens CYP1B1 antisense RNA 1 (CYP1B1-AS1), long non-coding RNA;GenBank Accession:NR_027252.1;《GenBank》 * |
Landscape of tumor suppressor long noncoding RNAs in breast cancer;Boran Pang等;《Journal of Experimental & Clinical Cancer Research》;第38卷;文章编号:79 * |
LncRNA CARMN overexpression promotes prognosis and chemosensitivity of triple negative breast cancer via acting as miR143-3p host gene and inhibiting DNA replication;Xiaonan Sheng等;《Journal of Experimental & Clinical Cancer Research》;第40卷;文章编号: 205 * |
LncRNAs and miRNAs participate in determination of sensitivity of cancer cells to cisplatin;Taheri M等;《Experimental and Molecular Pathology》;第123卷;文章编号:104602 * |
Also Published As
Publication number | Publication date |
---|---|
CN114958856A (en) | 2022-08-30 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
Chen et al. | RETRACTED: LINC01234/MicroRNA-31-5p/MAGEA3 Axis Mediates the Proliferation and Chemoresistance of Hepatocellular Carcinoma Cells | |
CN108753969B (en) | Application of long-chain non-coding RNA in hepatocellular carcinoma diagnosis and treatment | |
Jiang et al. | Long non-coding RNA lnc-MX1-1 is associated with poor clinical features and promotes cellular proliferation and invasiveness in prostate cancer | |
CN113201591B (en) | Application of long-chain non-coding RNA and inhibitor thereof in preventing and treating breast cancer | |
CN107519193B (en) | Molecular diagnostic marker for early stage esophageal squamous carcinoma and application thereof | |
CN111518886A (en) | MicroRNA related to sorafenib drug resistance of tumor cells and application thereof | |
CN113718035A (en) | Application of circular RNA hsa _ circ _0003552 and kit for detecting circular RNA hsa _ circ _0003552 | |
CN107267616B (en) | Application of non-coding gene biomarker in liver cancer | |
CN110923324A (en) | Breast cancer miRNA marker and application thereof | |
CN109486816B (en) | Polynucleotide for treating tumor and its application | |
CN114958856B (en) | Application of long-chain non-coding RNA CYP1B1-AS1 AS breast cancer biomarker and treatment target | |
CN107190005A (en) | Applications of the lncRNA as biomarker in adenocarcinoma of lung diagnosis and treatment | |
CN108192977B (en) | Molecular marker related to occurrence and development of gastric cancer | |
CN107625780B (en) | Non-small cell lung cancer diagnosis marker microRNA-1253 and application thereof in medicine and diagnosis kit | |
CN110317878A (en) | A kind of long-chain non-coding RNA and its application for bladder cancer diagnosis and treatment monitoring | |
CN107227362B (en) | Gene related to liver cancer and application thereof | |
CN105603117B (en) | MiR-3613 is used to distinguish lung squamous cancer transfer and non-diverting miRNA marker | |
CN111440868B (en) | Laryngeal squamous carcinoma molecular marker hsa_circ_0018169, and detection method and application thereof | |
CN111534587B (en) | Molecular marker 5-tRF-His, breast cancer detection kit and application thereof | |
WO2022057193A1 (en) | Long-chain non-coding rna and use of inhibitor thereof | |
CN112921085B (en) | Circ-NOLC1 used as ovarian cancer diagnosis marker and application thereof | |
CN111826433B (en) | Application of LncRNA in prognosis evaluation of diabetes and early warning of recurrent abortion | |
Zhou et al. | Low expression of lncRNA TUBA4B promotes proliferation and inhibits apoptosis of colorectal cancer cells via regulating P15 and P16 expressions. | |
CN107184983B (en) | Diagnosis and treatment target for lung adenocarcinoma | |
CN107881237B (en) | Lung cancer diagnosis marker microRNA-4317 and application thereof in medicines and diagnosis kit |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |