CN112831594B

CN112831594B - Functional molecular marker of clubroot-resistant gene CRa of Chinese cabbage and application of functional molecular marker

Info

Publication number: CN112831594B
Application number: CN202110283722.2A
Authority: CN
Inventors: 惠麦侠; 李宁; 马金健; 赵利民; 鱼昭君; 张淑娟; 张明科
Original assignee: Northwest A&F University
Current assignee: Northwest A&F University
Priority date: 2021-03-17
Filing date: 2021-03-17
Publication date: 2023-03-14
Anticipated expiration: 2041-03-17
Also published as: CN112831594A

Abstract

The invention discloses a functional molecular marker of a clubroot-resistant gene CRa of Chinese cabbage and application thereof. The functional molecular marker comprises at least one of a primer pair CRaEX04-FW1/RV1 and a primer pair CRaEX04-FW3/RV 3; wherein, the primer sequence of CRaEX04-FW1/RV1 is shown in SEQ ID NO.1 and SEQ ID NO. 2; the primer sequence of CRaEX04-FW3/RV3 is shown in SEQ ID NO.3 and SEQ ID NO. 4. The codominant primer marker developed by the invention is closely related to CRa gene, and can distinguish three genotypes of Chinese cabbage varieties of homozygous for disease resistance, heterozygous for disease resistance and homozygous for infection, so that non-target plants are eliminated, and the breeding efficiency of the Chinese cabbage variety resisting clubroot is greatly improved.

Description

Functional molecular marker of clubroot-resistant gene CRa of Chinese cabbage and application thereof

Technical Field

The invention belongs to the field of vegetable breeding and molecular genetics, and particularly relates to a functional molecular marker of a clubroot-resistant gene CRa of Chinese cabbage, an amplification fragment and application thereof.

Background

Clubroot is a worldwide soil-borne disease and is caused exclusively by brassicaceae crops such as Chinese cabbage, broccoli and the like. At present, the land area which is damaged by clubroot in China all the year round exceeds one third of the total planting area of cruciferae, and the yield and the quality of cruciferae crops in China are greatly reduced. The occurrence of clubroot cannot be thoroughly controlled through agricultural and biochemical control, and environmental pollution is caused by excessive use of pesticides, so that breeding of new clubroot-resistant varieties is the safest and effective method for preventing and treating clubroot. In addition, the frequently pathogenic differentiation and variation of physiological races of clubroot disease and regional differences can cause the phenomenon that the resistance of clubroot disease resistant varieties gradually declines or the resistance is lost, so that the excavation and utilization of resistance gene resources are important ways for obtaining durable disease resistant varieties. In Japan, the resistance gene Cra of Chinese cabbage has been widely applied to the practice of breeding and prevention of Chinese cabbage, but the distribution of Cra resistance gene in the resources and varieties in China is not clear, which restricts the application of the important gene in the breeding practice in China, and the development of practical molecular markers is urgently needed, and the distribution of the gene in the varieties and parents in China is systematically researched, thereby serving for the breeding of clubroot.

So far, some progress has been made in the research of the Chinese cabbage clubroot disease resistance gene, and some scholars have performed genetic analysis and gene mapping on the Chinese cabbage clubroot disease resistance gene. The earliest mapping for the resistance gene Crrl was Kuginuki et al. Using DH populations isolated from F1 plants, 3 RAPD markers were found to be linked to CR sites after study, and these 3 RAPD markers were converted to STS sequence tag sites, one of which was mapped to Crrl in the map (Suwabe, 2003 kuginuki,1997, kikuchi, 1999. Then, two RFLP markers linked to CRa of the CR gene were found, and the CRa was mapped on A03 chromosome (Matsumoto, 1998). Two CR sites of Crr1 and Crr2 are found by SSR markers, and are considered to be complementary in function, moreover, the resistance of homozygous plants to clubroot is better than that of heterozygous plants, and in addition, a weaker QTL site Crr4 is also found (Suwabe, 2006). The CRb gene was mapped on the A03 chromosome using the co-dominant marker TCR-05 (Piao, 2004). Hirai et al (2004) found yet another CR site Crr3.Sakamoto et al (2009) found two CR sites, CRk and CRc, and defined their locations on chromosome, CRc being relatively independent of previously found QTL, on chromosome A02. Of these 8 sites, three sites of Crr1, crr2 and Crr4 were mapped to the chinese cabbage linkage a08, a01 and a06, CRc to the a02 linkage, and Crra, crrb, crrk and Crr3 to the a03 linkage, respectively. At present, genes such as CRa and CRk are gradually cloned, but most developed molecular markers of the clubroot-resistant genes of Chinese cabbage are gene-linked markers, the linkage between random molecular markers and target genes is not tight enough, and genetic exchange causes the selection efficiency to be reduced (Matsumoto et al, 2005, hayashida et al, 2008). Most of molecular markers such as SSR, RFLP and AFLP commonly used in crop breeding are located in non-expression sequences among genes, and the difference between the molecular markers and expression sequences of linked genes cannot be distinguished, and the difference is the main reason for determining the difference of target characters among breeding materials. Therefore, depending on the sequence differences of the selected target genes, it is highly desirable to develop a practical and stable specific functional marker.

Disclosure of Invention

Aiming at the defects in the prior art, the invention provides a molecular marker primer of a clubroot-resistant gene CRa of Chinese cabbage, an amplification target fragment and application thereof, the PCR technology can be used for effectively carrying out genotype selection on a disease-resistant material of the Chinese cabbage, the disease-resistant and disease-susceptible Chinese cabbage can be distinguished, and resistant heterozygous loci and resistant homozygous loci can be distinguished simultaneously, so that non-target plants are eliminated, and the breeding efficiency of clubroot-resistant Chinese cabbage varieties is greatly improved.

In order to achieve the purpose, the technical scheme adopted by the invention for solving the technical problems is as follows:

a functional molecular marker of a Chinese cabbage clubroot-resistant gene CRa comprises at least one of a primer pair CRaEX04-FW1/RV1 and a primer pair CRaEX04-FW3/RV 3;

wherein, the primer sequence of CRaEX04-FW1/RV1 is shown as SEQ ID NO.1 and SEQ ID NO. 2;

the primer sequences of CRaEX04-FW3/RV3 are shown in SEQ ID NO.3 and SEQ ID NO. 4.

Furthermore, the functional molecular markers are located on the CRa gene and are all codominant markers.

Furthermore, the sequences of target fragments obtained by amplifying the primer pair CRaEX04-FW1/RV1 in disease-resistant and disease-sensitive varieties are shown as SEQ ID NO.5 and SEQ ID NO. 6.

Furthermore, the sequences of target fragments obtained by amplifying the primer pair CRaEX04-FW3/RV3 in disease-resistant and disease-susceptible varieties are shown as SEQ ID NO.7 and SEQ ID NO. 8.

The application of the primer in detecting whether the clubroot-resistant gene CRa is contained or not.

The primer is applied to detecting pure and heterozygous genotypes of the clubroot-resistant gene CRa.

A kit for screening clubroot-resistant Chinese cabbages comprises the primers.

The primer is applied to Chinese cabbage variety resource screening, resistance improvement and auxiliary breeding.

A kit for detecting pure and heterozygous genotypes of the clubroot-resistant gene CRa comprises the primer.

The invention utilizes the published gene sequence of Cra to design a primer, develops a CRa gene specific functional marker based on the difference of the sequence of a flu-resistant strain, and utilizes 64 parts of cabbage materials and F with known flu resistance ₂ 、BC ₁ The developed codominant primer marker is verified to be closely related to the CRa gene, resistance improvement and gene locus detection are carried out on Chinese cabbage variety resources by using the developed codominant primer marker, genotype selection can be effectively carried out on Chinese cabbage disease-resistant materials by using a PCR technology, and 3 genotypes of disease-resistant homozygous, disease-resistant heterozygous and disease-susceptible can be distinguished, so that non-target plants are eliminated, and the breeding efficiency of the Chinese cabbage variety resistant to clubroot is greatly improved.

The developed CRa gene specific functional molecular markers are named as CRaEX04-FW1/RV1 and CRaEX04-FW3/RV3, are positioned on the CRa gene, are developed respectively based on two different sites of a fourth exon on the CRa in a resistance material and a sensitivity material, and are codominant primer markers.

The codominant primer marker CRaEX04-FW1/RV1 can amplify a 321bp fragment (SEQ ID NO. 5) in a disease-resistant variety and amplify a 186bp fragment (SEQ ID NO. 6) in a disease-sensitive variety. The codominant primer marker CRaEX04-FW3/RV3 can amplify a 704bp fragment (SEQ ID NO. 7) in a disease-resistant variety; 413bp of fragment (SEQ ID NO. 8) can be amplified in susceptible varieties.

The invention has the beneficial effects that:

1. the two molecular markers are codominant primer markers of the clubroot resistance gene CRa of the Chinese cabbage, and can detect dominant and recessive alleles at the same time, so that three genotypes of disease-resistant homozygous, disease-resistant heterozygous and susceptible homozygous can be efficiently and accurately identified by one pair of primers.

2. The molecular marker designed in the invention belongs to CRa gene functional molecular markers, and the detection result has high specificity, stability and practicability. The two molecular markers are developed based on two different sites of the fourth exon on the CRa in the antibiotic and sensitive materials respectively, are positioned on the CRa gene, and can better avoid linkage drag compared with the existing gene linkage molecular markers with a certain genetic distance, reduce the introduction of adverse genes of a donor into a receptor, and have high detection efficiency.

3. The Chinese cabbage clubroot-resistant gene CRa functional marker, namely the allele characteristic PCR technology has the advantages of simple operation, good repeatability, no environmental influence and the like. The size difference of the implicit bands amplified by the two pairs of molecular marker primers is 135 bp and 291bp respectively, the length difference of the fragments is large, and the separation and the recognition are convenient in the electrophoresis process.

4. The molecular marker developed by the invention has strong practicability, can quickly and accurately screen the clubroot resistance gene CRa of the Chinese cabbage from the Chinese cabbage germplasm resources, and is applied to the clubroot resistance molecular marker selection breeding of the Chinese cabbage. The conventional resistance identification of clubroot is greatly influenced by the environment and needs to be observed by pulling out roots one by one, the operation is time-consuming and labor-consuming, the marker can be used for quick and accurate selection, the problem of difficult identification of recessive genes can be overcome, the homozygous single plant of CRa disease-resistant genes can be directly identified, the generation of selfing separation is omitted, the breeding period can be greatly shortened, the breeding process is accelerated, the breeding efficiency is improved, the clubroot-resistant genes can be quickly and accurately transferred to popularization varieties and can be polymerized with other disease-resistant, high-yield and stress-resistant genes.

Drawings

FIG. 1 is a sequence comparison of clubroot-resistant gene CRa molecular markers of Chinese cabbage in disease-resistant and susceptible Chinese cabbage, wherein 1 represents a disease-resistant material; 17 and 19 denote susceptible materials;

FIG. 2 shows the amplification results of two co-dominant primers in Chinese cabbage variety; wherein, the strip M is 2000bp DNA ladder; the

strips

1, 4, 8, 9, 10, 11, 13, 14 and 15 are disease-resistant Chinese cabbage varieties; the rest strips are all infected Chinese cabbage varieties.

Detailed Description

The following description of the embodiments of the present invention is provided to facilitate the understanding of the present invention by those skilled in the art, but it should be understood that the present invention is not limited to the scope of the embodiments, and it will be apparent to those skilled in the art that various changes may be made without departing from the spirit and scope of the invention as defined and defined in the appended claims, and all matters produced by the invention using the inventive concept are protected.

Example 1

1. Identification of seedling stage resistance

The inbred line 13s93 of the high-generation Chinese cabbage is used as a disease-susceptible female parent (P) ₁ ) CR people containing clubroot-resistant gene as disease-resistant male parent (P) ₂ ) Hybridizing the two to obtain F ₁ Group, F ₁ Selfing to obtain F ₂ Generation group (14 s 658), and P ₁ Backcrossing to obtain BC ₁ Population (14 CR 23), two populations were identified by inoculation with the bacterial fluid from Scutellaria laterosum.

2. Chinese cabbage clubroot disease resistance gene CRa specific primer design

The sequence of CRa gene (accession number AB 751516) was searched in GenBank, and specific amplification primers were designed on the fourth exon4 sequence with abundant diversity, and different antibiotic materials were amplified using Premier 5 software.

3. Development of Chinese cabbage clubroot disease resistance gene CRa specific primer

3 fragments with different sizes are obtained by amplifying the anti-susceptible materials, the 3 fragments are alleles through sequencing analysis, 2 large fragment deletions are detected between the anti-susceptible materials and the susceptible materials, and 2 pairs of codominant primer markers are respectively designed based on sequencing differential sites and are respectively named as CRaEX04-FW1/RV1 and CRaEX04-FW3/RV3.

Wherein, the PCR amplification reaction system is as follows:

template DNA:50ng, 10. Mu. Mol of upstream and downstream primers, 0.8. Mu.L each, mix:10 mu L, and finally supplementing the reaction system with sterile distilled water to 20 mu L;

the PCR reaction program is: firstly, 94 ℃ and 5min; then, 30 cycles of 94 ℃,30s,55 ℃,30s,72 ℃ and 30s are carried out; finally, the mixture was stored at 72 ℃ for 10min and 4 ℃.

The detection method of the primer amplification product comprises the following steps: the amplification products were separated by electrophoresis on 1.5% agarose gel.

Example 2 genotyping of disease-and disease-resistant Brassica rapa variety resources Using development markers

1. Extracting the genomic DNA of the Chinese cabbage seedlings subjected to seedling stage inoculation identification by adopting a CTAB method, wherein the extraction steps are as follows:

a) Taking about 0.2g of fresh tender leaves, stuffing the leaves into a centrifuge tube of 2mL, adding steel balls cleaned by 75% alcohol in advance, and rapidly grinding the leaves into powder by a freezing grinder;

b) To the centrifuge tube was added 700 μ L of CTAB extract preheated at 65 ℃ (CTAB: 2%, tris-HCl (pH8.0): 100mmol/L, EDTA:20mmol/L, naCl:1.4 mol/L), and quickly mixing;

c) Then putting the centrifuge tube into a 65 ℃ oven, shaking once every 15min in the middle, and baking for 60min;

d) The centrifuge tube was removed and a mixture of equal volume of chloroform and isoamyl alcohol (chloroform: isoamyl alcohol = 24), shaking up for 15min, and centrifuging at 12000r/min for 10min at normal temperature;

e) Taking supernatant (about 500 mu L), adding equal volume of precooled isopropanol, gently mixing to make DNA cluster, precipitating at-20 ℃ for 60min, and centrifuging at 12000r/min at 4 ℃ for 10min;

f) Discarding the supernatant, adding 500 μ L of 75% ethanol, washing the precipitate for 2 times, and air drying the precipitate in a fume hood;

g) Drying the precipitate, adding sterilized ddH of 400-500 mu L ₂ Dissolving O, or adding 75% ethanol, and storing at-20 deg.C;

2. primer design

Sequence comparison analysis of the disease-resistant gene in disease-resistant and disease-susceptible Chinese cabbages shows that difference exists on the fourth exon of a disease-resistant material, two groups of codominant functional molecular marker primers (shown in figure 1) are designed based on base sequence difference and are respectively named as CRaEX04-FW1/RV1 and CRaEX04-FW3/RV3, and specific sequences of the primers are as follows:

CRaEX04-FW1：5＇-ACTGCCACTAATCTGCAAACAT-3＇；(SEQ ID NO.1)

CRaEXON4-RV1：5＇-TGAGCATCCAGTGAGAAGCAA-3＇；(SEQ ID NO.2)

CRaEXON4-FW3：5＇-TACTCTCGAGGAATTGCTTCTCAC-3＇；(SEQ ID NO.3)

CRaEXON4-RV3：5＇-TGTTGATATTGATCGGAAGGGC-3＇。(SEQ ID NO.4)

the codominant primer marker CRaEX04-FW1/RV1 can amplify a 321bp fragment (SEQ ID NO. 5) in a disease-resistant variety and amplify a 186bp fragment (SEQ ID NO. 6) in a disease-sensitive variety, and the specific sequences are as follows:

SEQ ID NO.5：ACTGCCACTAATCTGCAAACATTGGAGCTTTCTGGTTGC TCAAGTCTTACGGAACTCCCCTTTTCTATTGGAAATGCTATCAATCTCCGGCGTTTGAATCTTAGTCATTGCTCAAGTCTGATGGAACTCCCCTCTTCTATGGAAAATGCCACTGATCTCGAGGAACTGAATCTCACGGGATGCTTACATCTAGCTAAGCTCCCATCCTCTATTGGTAATCTCAAGAAATTGTATCTCAAAGATTGCTCAAGTTTGGTGGAGTTCCCCTCTTCTATGGAAAATGTCACTACTCTCGAGGAATTGCTTCTCACTGGATGCTCA；

SEQ ID NO.6：ACTGCCACTAATCTGCAAACATTGGACCTTTCTGGTTGCTCAAGTCTAACTGAGCTCCCCTTTTCTATTGGAAATGCTATCGATCTCCGGCGTTTGAATCTTAGTCATTGCTCAAGTCTGATGGAACTCCCCTCTTCTATGGAAAATGTCACTACTCTCGAGGAATTGCTTCTCACGGGATGCTCA。

the codominant primer marked CRaEX04-FW3/RV3 can amplify a 704bp fragment (SEQ ID NO. 7) in a disease-resistant variety; the 413bp fragment (SEQ ID NO. 8) can be amplified in susceptible varieties, and the specific sequence is as follows:

SEQ ID NO.7：TACTCTCGAGGAATTGCTTCTCACTGGATGCTCACATCTAGCTAATCTCCCACCTTCTATTGGTAATCTCAAGACGTTGTATCTCGAGAATTGCTCAAGTTTGGTGGAGCTTCCATCTTCTGTTAGAAATTCCATTAATCTCAAGAATTTTTCTTTTAATGGTTGCTCAAATCTTGTGGAGCTCCCTTTCTATCTTGGTAATGCCACTGATCTCCAGAGATTGTATTTGAGAGGATGTTCAAGTCTACAGGAGCTTCCTTCTTCTATTGGGAATATAACTCGTCTTGAGGAGTTGATTCTCGAAGAATGCTCAAGTCTTGTTGAGCTCCCTTCTTCTATCGGAAATATAACTAGTCTCGAGTACTTGAATCTTGATGCGTGTTCAAGTCTTGTGAAGCTCCCCTCTTCTATTGGAGATATAATCAATCTGAAGAACTTGTATCTTAATGGATGCTCAAGTCTTGTGGAACTCCCATCTTCTATTGGAAATATAAATTATCTCAAGAAGTTGTCTCTTAATGGATGCTCAAGTCTGGTAGAGCTCCCCTCTTCCATTGGGAATATGACTAGTCTTGAAGAGTTGAATCTTAATGGATGCTCAAGTCTTGTGGAACTTCCATCTTCTATTGGAAATATGAATAATCTCTGGATGTTGTATCTCGAAAGATGTTCCAACCTAACGGCCCTTCCGATCAATATCAACA；

SEQ ID NO.8：TACTCTCGAGGAATTGCTTCTCACGGGATGCTCACATCTAGCTAATCTCCCACCTTCCATTGGTAATCTCAAGACGTTGTATCTCGAGAATTGCTCAAGTTTGGTGGCGCTTCCATCTTCTGTTAGAAATTCCTTTAATCTCAAGACTTTTTTTTCTAGTGGTTGCTCAAATCTTGTGGAGCTCCCTTTGTATATTCCCGCCAGTTACCTCAAGAAATTTGAATTGCGAGGATGCTCAAGTCTACGGGAGCTCCCTTCTTCTATTGGGAATATGACTAATCTTGAGGAGTTGTATCTCGGTGGATGCTCAAGTCTTGTTGAGCTCCCTTCTTCCATTGGGAATATGACTAATCTCAGGAAGTTGTCTCTTAATATATGCTCAAACCTAACGGCCCTTCCGATCAATATCAACA。

3. PCR amplification

Then, taking the DNA of the Chinese cabbage extracted in the step 1 as a template, and carrying out PCR amplification in a Bio-Rad S1000 type PCR instrument according to the following PCR amplification system and program:

(1) PCR amplification reaction system

The PCR reaction system is as follows: template DNA:50ng, 10. Mu. Mol upstream and downstream primers each 0.8. Mu.L, mix:10 μ L, and the reaction system was supplemented with sterile distilled water to 20 μ L.

(2) The PCR reaction procedure is

94 ℃ for 5min; 30 cycles of 94 ℃,30s,55 ℃,30s,72 ℃,30 s; finally, the mixture was stored at 72 ℃ for 10min and 4 ℃.

4. Detection of amplification products

The amplification products were detected by electrophoresis in 1.5% agarose gel, electrophoresis buffer 1 XTAE, electrophoresis at 120V for 30min, staining with EB after electrophoresis, and photographing with gel imaging system, the results are shown in FIG. 2.

Sequence listing

<110> northwest agriculture and forestry science and technology university

<120> functional molecular marker of clubroot-resistant gene CRa of Chinese cabbage and application thereof

<160> 8

<170> SIPOSequenceListing 1.0

<210> 1

<211> 22

<212> DNA

<213> Artificial Sequence (Artificial Sequence)

<400> 1

actgccacta atctgcaaac at 22

<210> 2

<211> 21

<212> DNA

<213> Artificial Sequence (Artificial Sequence)

<400> 2

tgagcatcca gtgagaagca a 21

<210> 3

<211> 24

<212> DNA

<213> Artificial Sequence (Artificial Sequence)

<400> 3

tactctcgag gaattgcttc tcac 24

<210> 4

<211> 22

<212> DNA

<213> Artificial Sequence (Artificial Sequence)

<400> 4

tgttgatatt gatcggaagg gc 22

<210> 5

<211> 321

<212> DNA

<213> Artificial Sequence (Artificial Sequence)

<400> 5

actgccacta atctgcaaac attggagctt tctggttgct caagtcttac ggaactcccc 60

ttttctattg gaaatgctat caatctccgg cgtttgaatc ttagtcattg ctcaagtctg 120

atggaactcc cctcttctat ggaaaatgcc actgatctcg aggaactgaa tctcacggga 180

tgcttacatc tagctaagct cccatcctct attggtaatc tcaagaaatt gtatctcaaa 240

gattgctcaa gtttggtgga gttcccctct tctatggaaa atgtcactac tctcgaggaa 300

ttgcttctca ctggatgctc a 321

<210> 6

<211> 186

<212> DNA

<213> Artificial Sequence (Artificial Sequence)

<400> 6

actgccacta atctgcaaac attggacctt tctggttgct caagtctaac tgagctcccc 60

ttttctattg gaaatgctat cgatctccgg cgtttgaatc ttagtcattg ctcaagtctg 120

atggaactcc cctcttctat ggaaaatgtc actactctcg aggaattgct tctcacggga 180

tgctca 186

<210> 7

<211> 704

<212> DNA

<213> Artificial Sequence (Artificial Sequence)

<400> 7

tactctcgag gaattgcttc tcactggatg ctcacatcta gctaatctcc caccttctat 60

tggtaatctc aagacgttgt atctcgagaa ttgctcaagt ttggtggagc ttccatcttc 120

tgttagaaat tccattaatc tcaagaattt ttcttttaat ggttgctcaa atcttgtgga 180

gctccctttc tatcttggta atgccactga tctccagaga ttgtatttga gaggatgttc 240

aagtctacag gagcttcctt cttctattgg gaatataact cgtcttgagg agttgattct 300

cgaagaatgc tcaagtcttg ttgagctccc ttcttctatc ggaaatataa ctagtctcga 360

gtacttgaat cttgatgcgt gttcaagtct tgtgaagctc ccctcttcta ttggagatat 420

aatcaatctg aagaacttgt atcttaatgg atgctcaagt cttgtggaac tcccatcttc 480

tattggaaat ataaattatc tcaagaagtt gtctcttaat ggatgctcaa gtctggtaga 540

gctcccctct tccattggga atatgactag tcttgaagag ttgaatctta atggatgctc 600

aagtcttgtg gaacttccat cttctattgg aaatatgaat aatctctgga tgttgtatct 660

cgaaagatgt tccaacctaa cggcccttcc gatcaatatc aaca 704

<210> 8

<211> 413

<212> DNA

<213> Artificial Sequence (Artificial Sequence)

<400> 8

tactctcgag gaattgcttc tcacgggatg ctcacatcta gctaatctcc caccttccat 60

tggtaatctc aagacgttgt atctcgagaa ttgctcaagt ttggtggcgc ttccatcttc 120

tgttagaaat tcctttaatc tcaagacttt tttttctagt ggttgctcaa atcttgtgga 180

gctccctttg tatattcccg ccagttacct caagaaattt gaattgcgag gatgctcaag 240

tctacgggag ctcccttctt ctattgggaa tatgactaat cttgaggagt tgtatctcgg 300

tggatgctca agtcttgttg agctcccttc ttccattggg aatatgacta atctcaggaa 360

gttgtctctt aatatatgct caaacctaac ggcccttccg atcaatatca aca 413

Claims

1. Clubroot-resistant gene of Chinese cabbageCRaIs characterized in that the functional molecular marker is obtained by amplifying a primer pair CRaEX04-FW1/RV1 shown as sequences SEQ ID NO.1 and SEQ ID NO.2 and a primer pair CRaEX04-FW3/RV3 shown as sequences SEQ ID NO.3 and SEQ ID NO.4, wherein:

the molecular marker amplified by CRaEX04-FW1/RV1 is positioned at 128 to 262bp in a sequence SEQ ID NO.5, and the specific deletion fragment sequence is as follows: <xnotran> TCCCCTCTTCTATGGAAAATGCCACTGATCTCGAGGAACTGAATCTCACGGGATGCTTACATCTAGCTAAGCTCCCATCCTCTATTGGTAATCTCAAGAAATTGTATCTCAAAGATTGCTCAAGTTTGGTGGAGT; </xnotran>

The molecular marker amplified by CRaEX04-FW3/RV3 is positioned at 354 to 641bp in a sequence SEQ ID NO.7, and the specific deletion fragment sequences are respectively as follows:

GTCTCGAGTACTTGAATCTTGATGCGTGTTCAAGTCTTGTGAAGCTCCCCTCTTCTATTGGAGATATAATCAATCTGAAGAACTTGTATCTTAATGGATGCTCAAGTCTTGTGGAACTCCCATCTTCTATTGGAAATATAAATTATCTCAAGAAGTTGTCTCTTAATGGATGCTCAAGTCTGGTAGAGCTCCCCTCTTCCATTGGGAATATGACTAGTCTTGAAGAGTTGAATCTTAATGGATGCTCAAGTCTTGTGGAACTTCCATCTTCTATTGGAAATATGAATA。

2. the Chinese cabbage clubroot-resistant gene according to claim 1CRaThe functional molecular marker of (1), wherein the functional molecular marker is located inCRaOn the genes, the genes are all codominant markers.

3. The method of detecting whether or not a gene for clubroot disease is contained in a molecular marker of claim 1CRaThe use of (1).

4. Use of the molecular marker of claim 1 for detecting clubroot-resistant genesCRaPure and hybrid genotypes.

5. The application of the molecular marker of claim 1 in resource screening, resistance improvement and auxiliary breeding of Chinese cabbage varieties.