Detailed Description
Some terms related to the present invention are explained below.
As used herein, "nucleic acid" or "nucleotide" refers to deoxyribonucleic acid (DNA) or ribonucleic acid (RNA) in either single-or double-stranded form, or a combination of DNA or RNA thereof, and polymers thereof, said nucleic acid molecules being synthetic or recombinant.
In the present invention, the "expression vector" refers to a vector comprising a recombinant nucleotide including an expression control sequence operatively linked to a nucleotide sequence to be expressed. The expression vector includes cis-acting elements sufficient for expression; other elements for expression may be provided by the host cell or in an in vitro expression system. Expression vectors include all vectors known in the art, including cosmids, plasmids, and viruses (e.g., lentiviruses, retroviruses, adenoviruses, and adeno-associated viruses), among others, that incorporate recombinant polynucleotides.
In the present invention, "lentivirus" refers to a genus of the family Retroviridae, which is unique among retroviruses, is capable of infecting non-dividing cells, can transmit a large amount of genetic information to the DNA of host cells, and thus is one of the most effective methods in gene delivery vectors, such as HIV, SIV, and FIV, among which lentiviruses.
In the present invention, "tumor" refers to a disease caused by uncontrolled growth of abnormal cells, which may spread locally or through the blood stream and lymphatic system to other parts of the body. Various tumors are described herein, including but not limited to breast cancer, prostate cancer, ovarian cancer, cervical cancer, skin cancer, pancreatic cancer, colorectal cancer, renal cancer, liver cancer, brain cancer, lymphoma, leukemia, lung cancer, and the like. The terms "tumor," "cancer," and "carcinoma" are used interchangeably herein and include both solid tumors and liquid tumors.
In the present invention, a "chimeric antigen receptor" (CAR) is an artificially engineered receptor that is capable of anchoring a specific molecule (e.g., an antibody) that recognizes a tumor cell surface antigen onto an immune cell (e.g., a T cell) so that the immune cell recognizes the tumor antigen or a viral antigen and kills the tumor cell or a virally infected cell. Generally, a chimeric antigen receptor comprises, in order, a signal peptide, an antigen binding domain, a transmembrane region, and an intracellular signal region. The chimeric antigen receptor of the present invention can be constructed using signal peptides, transmembrane regions and intracellular signal regions known in the art for constructing CARs. The polypeptide combined with the tumor cell membrane antigen can be combined with tumor cells to widely express the membrane antigen with higher or medium affinity, and the polypeptide is usually inserted with an epitope; between the signal peptide and the polypeptide that binds to the tumor cell membrane antigen, inside the antigen-binding domain, and between the antigen-binding domain and the hinge region; the antigen binding domain is a natural polypeptide or an artificial synthetic polypeptide.
In the present invention, the term "costimulatory molecule" refers to a molecule that is present on the surface of an antigen-presenting cell and that is capable of binding to a costimulatory molecule receptor on a Th cell to produce a costimulatory signal. Proliferation of T lymphocytes requires not only antigen binding but also reception of costimulatory molecular signals. The transmission of the costimulatory signal to the T cell is mainly through the binding of the costimulatory molecules CD80, CD86 expressed on the surface of the antigen presenting cell to the CD28 molecule on the surface of the T cell. The B cells receive a costimulatory signal via a general pathogen component such as LPS, or via a complement component, or via CD40L on the surface of activated antigen-specific Th cells. Co-stimulatory factors known in the art for constructing CARs may be employed, including but not limited to CD27, CD28, 4-1BB, OX40, ICOS, B7-H3, and/or any combination thereof.
Example 1 determination of single domain antibodies targeting BCMA
The method for screening BCMA-targeted single domain antibodies by utilizing humanized BCMA protein to immunize alpaca and through a phage display library comprises the following steps:
antigen immunization. Selecting healthy adult monomodal camel, uniformly mixing human BCMA protein according to the ratio of 15 mu g/Kg and Freund's adjuvant according to the ratio of 1:1, and immunizing for 6-8 times by adopting a back subcutaneous multipoint injection mode at intervals of 2 weeks. Freund's complete adjuvant was used for the first immunization, and Freund's incomplete adjuvant was used for each of the remaining immunizations. 100mL of unimodal camel neck peripheral blood is collected every week after immunization is finished, the titer of the BCMA antibody in the alpaca serum is detected by using ELISA, and when the concentration of the BCMA antibody reaches above 128K, the requirements for constructing an antibody phage display library are met, and the polyclonal antibody of the BCMA is obtained primarily.
And (II) constructing a phage display library.
Collecting 100mL of immunized alpaca Peripheral blood, separating by using lymphocyte separation liquid to obtain Peripheral Blood Mononuclear Cells (PBMC), extracting PBMC total RNA, performing reverse transcription reaction by using an RT-PCR kit to obtain cDNA, and then obtaining a specific VHH fragment through two rounds of nesting. And (3) carrying out enzyme digestion and purification on the obtained VHH fragment, connecting the VHH fragment to a phage vector, and then constructing a phage library through click transformation. Randomly selecting 50 clones for identification, and calculating the insertion rate to be more than 98.5%.
(III) Single Domain antibody screening and obtaining
Screening positive clones by an enzyme-linked immunosorbent assay method by taking soluble human BCMA as an antigen. Extracting positive clone plasmid and transforming to escherichia coli competent cell, inducing nano antibody protein expression by 100mM IPTG, and separating and purifying by using resin to collect target protein. The affinity of the target protein and human BCMA is measured by a BIACORE3000 biomacromolecule interaction instrument (purchased from GE company), the result shows that the affinity of the screened antibody is between 3.52E-07 and 7.89E-09, and the single-domain antibody with the highest affinity is selected for subsequent experiments.
(four) Single Domain antibody sequence analysis
The amino acid sequence structure of the BCMA single domain antibody is determined, as shown in SEQ ID NO:1, the sequence structure is analyzed by IMGT, and the sequence of the CDR1 region is GGSVRTGE, the sequence of the CDR2 region is ARELVGW, and the sequence of the CDR3 region is TGVYYCTANVEGNRIY.
EXAMPLE 2 determination of the sequence of the chimeric antigen receptor Gene
The amino acid and nucleotide sequences of a signal peptide, a CD28 transmembrane region, a 4-1BB costimulatory factor, a CD3 zeta intracellular signal region, a human CD28 hinge region are searched and obtained by a bioinformatics method, wherein the amino acid sequence of the CD28 transmembrane region is shown as SEQ ID NO. 2, the amino acid sequence of the 4-1BB amino acid is shown as SEQ ID NO. 4, the amino acid sequence of the signal peptide is shown as SEQ ID NO. 5, and the amino acid sequence of the CD3 zeta intracellular signal region is shown as SEQ ID NO. 3. In order to facilitate the analysis and the comparison, a targeting BCMA ssFv fragment with a common antibody structure kept by the laboratory is selected as a positive control to carry out the subsequent experiment, and a chimeric antigen receptor gene sequence is constructed in a gene total synthesis mode, wherein the CAR-VHH structure with a single-domain antibody antigen binding domain functional element is signal peptide-anti BCMA VHH-CD 28 TM-4-1 BB-CD3 zeta, the CAR-AN structure with a common antibody antigen binding domain functional element is signal peptide-anti BCMA ssFC-CD 28 TM-4-1 BB-CD3 zeta, the CAR-VHH amino acid sequence is shown as SEQ ID NO:6, and the nucleotide sequence is shown as SEQ ID NO: 7.
EXAMPLE 3 preparation of plasmid vector carrying chimeric antigen receptor Gene
3.1 digestion of the target product and linearization of the plasmid vector
CAR-VHH and CAR-AN gene sequences are amplified and obtained by a PCR method, and Xba I and BamH I enzyme cutting sites are added at two ends of the sequences. The target gene fragment and a lentiviral vector plasmid pCDH-CMV-MCS-EF1-GFP-T2A-Puro (purchased from Addgene company) are subjected to double enzyme digestion reaction of Xba I and BamH I, wherein the enzyme digestion reaction conditions are as follows: the enzyme was cleaved at 37 ℃ for 40 min.
3.2 recovery of the cleavage product
The DNA fragments containing CAR-VHH, CAR-AN fragment and pCDH-CMV-MCS-EF1-GFP-T2A-Puro were electrophoresed on 1.5% agarose gel, and after the electrophoresis, the agarose gel bands containing the above nucleic acid fragments were cut off and placed in two clean EP tubes. The DNA in the agarose gel was purified and concentrated using DNA Extraction kit Ver 4.0 (purchased from Taraka).
3.3 product ligation and transformation
Connecting the DNA fragments at 16 ℃ overnight under the action of T4 ligase, transferring the obtained connecting product into DH5 alpha competent cells by a click method, adding the competent cells into 900 mu L of liquid LB culture medium without antibiotic, culturing for 2h by a shaker at 37 ℃ at 200 rpm, centrifuging for 2 min at 4000 rpm, discarding the supernatant, carrying out basic suspension precipitation by using 100 mu L of liquid LB culture medium, smearing the bacterial liquid on Amp-resistant solid LB plates, placing the plates in a bacterial incubator at 37 ℃, culturing overnight, and picking out positive clones.
3.4 identification of Positive clones
Extracting plasmids in the positive clones, carrying out double enzyme digestion by Xba I and BamH I, identifying target fragments by agarose gel electrophoresis of enzyme digestion products, wherein the size of the CAR-VHH target fragment is about 950bp, the size of the CAR-AN target fragment is about 1600bp, and the sequencing identification of the plasmids shows that the target sequences are correct.
Example 4 packaging, concentration and titer determination of lentiviruses
4.1 packaging of Lentiviral vectors
The original strain solution with correct sequencing was inoculated into 50 mL of Amp-resistant liquid LB medium, shaken at 37 ℃ at 200 rpm, cultured overnight, centrifuged at 4000 rpm to collect the cells, and Plasmid was extracted using Takara MiniBEST Plasmid Purification Kit Ver 4.0 (purchased from Takara).
Mixing with 5% CO at 37 deg.C in six-hole plate2293T cells were cultured under the conditions, and the fresh medium was replaced when the cell confluence reached 80%. Plasmid was packaged as dR8.9: VSVG envelope protein plasmids were mixed at a ratio of 4:3:1, followed by addition of Opti-MEM medium to make up the volume of 5 mL. The mixed solution of the plasmid and the transfection reagent is dropwise added into 293T cell culture solution at 37 ℃ and 5% CO2Culturing under the condition for 48 h.
4.2 concentration and titer determination of lentiviruses
Centrifuging at 2500 rpm for 10 min, collecting supernatant, sequentially filtering with 0.45 μm filter membrane and 0.22 μm filter membrane to remove cell debris and other impurities, dialyzing and concentrating the virus-containing supernatant, and detecting titer of the virus by TCID50 method, wherein the results show that titer of lentivirus carrying CAR-VHH and CAR-AN genes reaches 107 TCID50/mL or more.
Example 5 preparation of targeting BCMA CAR-T cells
Healthy volunteers were recruited, 20mL of peripheral blood was collected, separated by flow cytometry and CD4 in the peripheral blood was obtained+、CD8+T cells. CD4 is currently the most commonly used cell in CAR-T cell production+:CD8+T cells with a ratio of 1:1, however, in initial experiments, the inventors found that it is difficult to adapt the ratio of T cells to the chimeric antigen receptor structure with a single domain antibody antigen binding domain of the present invention, and the killing efficiency of the chimeric antigen receptor structure against tumor cells is low, so that CD4 is adjusted during CAR-T cell preparation+:CD8+The proportion of T cells is 1:1, 2:1 and 3:2 respectively.
Culturing the obtained T cells in RPMI1640 medium (containing 10% FBS) for 2-3 passages, collecting cells and distributing in 6-well plate (1 × 10 per well) after the cells are in logarithmic growth phase7The cells, although each containing a lentivirus carrying the CAR-VHH and CAR-AN genes, were cultured at 37 ℃ for 7 daysThe cells are collected and preserved.
Example 6 targeting BCMA CAR-T cells in vitro anti-tumor Effect
In order to detect the tumor killing effect of the CAR-T cells provided by the invention, myeloma cell line U266 cells capable of expressing BCMA antigens are selected as in-vitro experimental objects to verify the in-vitro tumor killing effect. U266 cells were cultured in RPMI1640 medium, 5% CO2Then, the cells were cultured in an incubator at 37 ℃ for 48 hours, and then digested with trypsin to collect the cells.
CAR-T VHH, CAR-T AN cells and PBS (negative control) were mixed with U266 cells at a 1:1 ratio, added to 96-well culture plates and placed in 5% CO2After culturing in an incubator at 37 ℃ for 24 hours, adding 20 mu L of CCK-8 into each well, continuously incubating for 2 hours, detecting the wavelength of 450nm by using an enzyme-linked immunosorbent assay, and measuring the OD value, wherein the killing rate is [1- (experiment group OD value-effector cell control group OD value)/target cell control group OD value ═ 1- (experiment group OD value-effector cell control group OD value)/target cell control group OD value]X 100%. As shown in FIG. 2, the CAR-T cells can effectively kill U266 cells, and the killing rate is over 60%. The results also indicate that the antigen binding domain using the single domain antibody appears to have a stronger tumor killing effect than the antigen binding domain using the normal antibody, especially in increasing CD4+:CD8+This trend is more pronounced after T cell ratios. This illustrates CD4+:CD8+The T cell ratio has a significant effect on the killing effect of CAR-T cells, CD4 compared to the currently common 1:1 ratio+The increased specific gravity of T cells appears to be more favorable for BCMA-targeted CAR-T cells to exert anti-tumor effects in CAR-T VHH from CD4 in a 3:2 ratio+:CD8+The therapeutic cells obtained by T cell preparation have the highest tumor cell killing efficiency, up to about 86%, while the highest killing efficiency in CAR-T AN is represented by CD4 in the ratio of 2:1+:CD8+T cell preparation the therapeutic cells obtained were approximately 72%. In order to obtain convincing experimental data, CAR-T cells with high killing efficiency are selected for subsequent in-vivo animal experiments, namely CD4 with the ratio of 2:1+:CD8+T cell preparation of the therapeutic cells.
Example 7 targeting GPC3 in vivo anti-tumor Effect
In order to further verify the anti-tumor effect of the CAR-T cells, the relevant pharmaceutical experiments using Balb/c mouse transplantation tumor model (loaded with hepatoma cell line U266 cells) as biological material in this example were performed by the following specific experimental procedures and results:
7.1 secretion of immune factors
Taking U266 cells in logarithmic growth phase, injecting BALB/C mice subcutaneously, each 1X 106 And selecting mice forming obvious tumor masses as experimental objects after 7-10 days. Selecting 30 tumor-bearing mice, randomly dividing into 3 groups, namely CAR-T VHH, CAR-T AN and physiological saline group, and injecting 2 x 10 mice respectively in tail vein injection mode6 Injecting the cells and physiological saline with the same volume once every 7 days for 2 times, taking blood from tail vein 3 weeks after the second injection, separating to obtain serum, and determining IFN-gamma, IL-6 and IL-10 levels in the serum of the mouse by adopting an Elisa kit instruction. In FIG. 3, it is shown that IFN- γ levels in the plasma of mice are significantly increased after CAR-T treatment, while the levels in the CAR-T VHH, CAR-T AN groups are similar and not significantly different; in FIG. 4 it is shown that IL-6 levels in the plasma of mice are significantly increased after CAR-T treatment and the CAR-T VHH group has lower IL-6 expression levels with significant differences; FIG. 5 shows that the level of IL-10 in the plasma of mice was significantly increased after CAR-T treatment, and the CAR-T VHH group had a lower level of IL-10 expression, with significant differences and a more significant reduction. The above results demonstrate that in vivo experiments, both CAR-T VHH and CAR-T AN were able to effectively activate immune responses in vivo to suppress tumor development and development, and although no significant difference in IFN- γ expression levels was seen, CAR-T VHH appeared to have a relatively mild activating effect on interleukins, which were expressed at a lower level than the CAR-T AN group, IL-6 and IL-10, and which were among the major immune factors in the immune factor storm during CAR-T therapy, suggesting that CAR-T VHH has a lower risk of toxic side effects during therapy.
7.2 tumor volume determination in tumor-bearing mice
The U266 cell tumor-bearing mice were treated with CAR-T VHH, CAR-T AN and physiological saline and then assayed every 2 daysTumor volume was measured once for 20 days. Tumor volume calculation formula volume = (a)2xb)/2, a is the length of the widest part of the tumor and b is the length of the longest part of the tumor.
As shown in figure 6, CAR-T cell therapy was able to effectively inhibit tumor growth in tumor-bearing mice experiments, the tumor volume in the treated group was significantly less than in the saline group, and CAR-T VHH appeared to be more effective in inhibiting tumor growth processes, and the tumor volume in the CAR-T VHH group was significantly less than in the CAR-T AN group two weeks after treatment, demonstrating that constructing CAR-T cells with the single domain antibodies provided in the present invention as antigen binding domains is more advantageous in tumor therapy.
Sequence listing
<110> Beijing Guangdong Biotechnology Ltd
<120> a Chimeric Antigen Receptor (CAR) targeting BCMA and uses thereof
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<170> SIPOSequenceListing 1.0
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Gln Ala Gln Leu Lys Gly Gly Ser Leu Gly Glu Ser Leu Arg Gly Gly
1 5 10 15
Ser Val Arg Thr Gly Glu Ser Leu Arg Leu Ser Cys Glu Ala His Trp
20 25 30
Phe Ser Gly Asn Ile Tyr Ser Ile Asn Arg Met Ala Arg Glu Leu Val
35 40 45
Gly Trp Tyr Arg Gln Val Ser Gly Met Gln His Ser Tyr Val Glu Leu
50 55 60
Glu Val Val Ala Thr Gln Met Asn Ser Thr Gly Val Tyr Tyr Cys Thr
65 70 75 80
Ala Asn Val Glu Gly Asn Arg Ile Tyr Ala Leu Pro Ala Pro Gly Ser
85 90 95
Arg Tyr Pro Thr Trp Gly Gln Gly Thr Gln Gly Thr Pro Asp Asp Val
100 105 110
Thr Val Ser Ser
115
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<212> PRT
<213> Artificial Sequence (Artificial Sequence)
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Ile Tyr Ile Trp Ala Pro Leu Ala Gly Thr Cys Gly Val Leu Leu Leu
1 5 10 15
Ser Leu Val Ile Thr Leu Tyr Cys
20
<210> 3
<211> 112
<212> PRT
<213> Artificial Sequence (Artificial Sequence)
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Ala Val Leu Pro Ser Ala Ser Ala Ala Ala Pro Ala Thr Gly Gly Gly
1 5 10 15
Gly Ala Gly Leu Thr Ala Gly Leu Ala Leu Gly Ala Ala Gly Gly Thr
20 25 30
Ala Val Leu Ala Leu Ala Ala Gly Ala Ala Pro Gly Met Gly Gly Leu
35 40 45
Pro Ala Ala Leu Ala Pro Gly Gly Gly Leu Thr Ala Gly Leu Gly Leu
50 55 60
Ala Leu Met Ala Gly Ala Thr Ser Gly Ile Gly Met Leu Gly Gly Ala
65 70 75 80
Ala Ala Gly Leu Gly His Ala Gly Leu Thr Gly Gly Leu Ser Thr Ala
85 90 95
Thr Leu Ala Thr Thr Ala Ala Leu His Met Gly Ala Leu Pro Pro Ala
100 105 110
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Lys Arg Gly Arg Lys Lys Leu Leu Tyr Ile Phe Lys Gln Pro Phe Met
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Arg Pro Val Gln Thr Thr Gln Glu Glu Asp Gly Cys Ser Cys Arg Phe
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Pro Glu Glu Glu Glu Gly Gly Cys Glu Leu
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Met Ala Leu Pro Val Thr Ala Leu Leu Leu Pro Leu Ala Leu Leu Leu
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His Ala Arg Pro Ser
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Met Ala Leu Pro Val Thr Ala Leu Leu Leu Pro Leu Ala Leu Leu Leu
1 5 10 15
His Ala Arg Pro Ser Gln Ala Gln Leu Lys Gly Gly Ser Leu Gly Glu
20 25 30
Ser Leu Arg Gly Gly Ser Val Arg Thr Gly Glu Ser Leu Arg Leu Ser
35 40 45
Cys Glu Ala His Trp Phe Ser Gly Asn Ile Tyr Ser Ile Asn Arg Met
50 55 60
Ala Arg Glu Leu Val Gly Trp Tyr Arg Gln Val Ser Gly Met Gln His
65 70 75 80
Ser Tyr Val Glu Leu Glu Val Val Ala Thr Gln Met Asn Ser Thr Gly
85 90 95
Val Tyr Tyr Cys Thr Ala Asn Val Glu Gly Asn Arg Ile Tyr Ala Leu
100 105 110
Pro Ala Pro Gly Ser Arg Tyr Pro Thr Trp Gly Gln Gly Thr Gln Gly
115 120 125
Thr Pro Asp Asp Val Thr Val Ser Ser Ile Tyr Ile Trp Ala Pro Leu
130 135 140
Ala Gly Thr Cys Gly Val Leu Leu Leu Ser Leu Val Ile Thr Leu Tyr
145 150 155 160
Cys Lys Arg Gly Arg Lys Lys Leu Leu Tyr Ile Phe Lys Gln Pro Phe
165 170 175
Met Arg Pro Val Gln Thr Thr Gln Glu Glu Asp Gly Cys Ser Cys Arg
180 185 190
Phe Pro Glu Glu Glu Glu Gly Gly Cys Glu Leu Ala Val Leu Pro Ser
195 200 205
Ala Ser Ala Ala Ala Pro Ala Thr Gly Gly Gly Gly Ala Gly Leu Thr
210 215 220
Ala Gly Leu Ala Leu Gly Ala Ala Gly Gly Thr Ala Val Leu Ala Leu
225 230 235 240
Ala Ala Gly Ala Ala Pro Gly Met Gly Gly Leu Pro Ala Ala Leu Ala
245 250 255
Pro Gly Gly Gly Leu Thr Ala Gly Leu Gly Leu Ala Leu Met Ala Gly
260 265 270
Ala Thr Ser Gly Ile Gly Met Leu Gly Gly Ala Ala Ala Gly Leu Gly
275 280 285
His Ala Gly Leu Thr Gly Gly Leu Ser Thr Ala Thr Leu Ala Thr Thr
290 295 300
Ala Ala Leu His Met Gly Ala Leu Pro Pro Ala
305 310 315
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atggcgctgc cggtgaccgc gctgctgctg ccgctggcgc tgctgctgca tgcgcgcccg 60
agccaggcgc agctgaaagg cggcagcctg ggcgaaagcc tgcgcggcgg cagcgtgcgc 120
accggcgaaa gcctgcgcct gagctgcgaa gcgcattggt ttagcggcaa catttatagc 180
attaaccgca tggcgcgcga actggtgggc tggtatcgcc aggtgagcgg catgcagcat 240
agctatgtgg aactggaagt ggtggcgacc cagatgaaca gcaccggcgt gtattattgc 300
accgcgaacg tggaaggcaa ccgcatttat gcgctgccgg cgccgggcag ccgctatccg 360
acctggggcc agggcaccca gggcaccccg gatgatgtga ccgtgagcag catttatatt 420
tgggcgccgc tggcgggcac ctgcggcgtg ctgctgctga gcctggtgat taccctgtat 480
tgcaaacgcg gccgcaaaaa actgctgtat atttttaaac agccgtttat gcgcccggtg 540
cagaccaccc aggaagaaga tggctgcagc tgccgctttc cggaagaaga agaaggcggc 600
tgcgaactgg cggtgctgcc gagcgcgagc gcggcggcgc cggcgaccgg cggcggcggc 660
gcgggcctga ccgcgggcct ggcgctgggc gcggcgggcg gcaccgcggt gctggcgctg 720
gcggcgggcg cggcgccggg catgggcggc ctgccggcgg cgctggcgcc gggcggcggc 780
ctgaccgcgg gcctgggcct ggcgctgatg gcgggcgcga ccagcggcat tggcatgctg 840
ggcggcgcgg cggcgggcct gggccatgcg ggcctgaccg gcggcctgag caccgcgacc 900
ctggcgacca ccgcggcgct gcatatgggc gcgctgccgc cggcg 945