CN111554384A - Adenocarcinoma pathological image analysis method based on prior perception and multitask learning - Google Patents
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Abstract
The invention discloses an adenocarcinoma pathological image analysis method based on prior perception and multitask learning, which comprises the following steps: for a newly collected adenocarcinoma pathological image, extracting an image block, preprocessing the extracted image block, and sending the image block into a trained adenocarcinoma pathological image analysis model constructed based on a multi-task learning method, wherein the adenocarcinoma pathological image analysis model comprises two parallel branches: the gland structure segmentation branch and the benign and malignant automatic grading branch are used for simultaneously obtaining a gland structure prediction result and a benign and malignant grading result; the segmentation result of the gland structure segmentation branch is used as prior information to be transmitted to the benign and malignant automatic grading branch, and the benign and malignant grading branch is restrained and guided to grade the adenocarcinoma pathological image after paying attention to the semantic content of the gland structure. The invention can realize parallel glandular tissue segmentation and automatic grading, reduces the physical, energy and time cost investment of manual diagnosis of a pathologist, and improves the accuracy of automatic diagnosis.
Description
Technical Field
The invention relates to the technical field of artificial intelligence deep learning methods and medical pathology, in particular to an adenocarcinoma pathology image analysis method, device and system based on prior perception and multitask learning.
Background
With the development of computer vision technology, more and more advanced image processing algorithms are applied to the field of medical images. In the field of digital pathology, deep learning plays an increasingly important role due to its excellent performance in image classification, tissue segmentation, cell detection, and the like. In general, the deep learning method simply implements the processing of image pixels to make the final label prediction. Although it achieves manifestations even exceeding human levels, its application to the clinic lacks explanation of pathological levels. Therefore, this requires a priori knowledge of the pathology to be considered to guide the reasoning of the model.
Adenocarcinoma is the most common cancer. In pathological diagnosis of prostate cancer, lung adenocarcinoma and colon adenocarcinoma, the differentiation degree of glands is an important index for determining the grade of adenocarcinoma and an important standard for manual diagnosis and grading of pathologists. Therefore, the study of adenocarcinomas often relies on an accurate description of the gland. Therefore, a method is needed to incorporate the important index of the gland differentiation degree into the corresponding adenocarcinoma pathological image analysis process so as to obtain higher automatic diagnosis accuracy and more precise diagnosis results.
Disclosure of Invention
The invention aims to provide a method, a device and a system for analyzing adenocarcinoma pathological images based on prior perception and multitask learning, wherein the prior perception and multitask learning method is used for automatically analyzing the adenocarcinoma pathological images, so that parallel glandular tissue segmentation and automatic grading are realized, and the physical, energy and time cost investment of manual diagnosis of pathologists is reduced; meanwhile, in the invention, the gland segmentation result is used as prior information for restricting the automatic grading task prediction, thereby improving the accuracy of automatic diagnosis. Moreover, the priori information provided by the invention is based on the clinical pathological diagnosis gold standard of the adenocarcinoma, and the interpretability of the application to clinical pathology is improved.
In order to achieve the above object, with reference to fig. 1, the present invention provides an adenocarcinoma pathology image analysis method based on prior sensing and multitask learning, where the image analysis method includes:
for a newly collected adenocarcinoma pathological image, extracting an image block, preprocessing the extracted image block, and sending the image block into a trained adenocarcinoma pathological image analysis model constructed based on a multi-task learning method, wherein the adenocarcinoma pathological image analysis model comprises two parallel branches: the gland structure segmentation branch and the benign and malignant automatic grading branch are used for simultaneously obtaining a gland structure prediction result and a benign and malignant grading result;
the segmentation result of the gland structure segmentation branch is used as prior information to be transmitted to the benign and malignant automatic grading branch, and the benign and malignant grading branch is restrained and guided to grade the adenocarcinoma pathology image after paying attention to the semantic content of the gland structure.
As a preferred example, the process of constructing the adenocarcinoma pathology image analysis model includes the following steps:
s1, collecting a certain amount of digital adenocarcinoma pathological images, and manually marking benign and malignant tissue areas and corresponding glandular tissue structures on each adenocarcinoma pathological image;
s2, extracting image blocks aiming at benign and malignant tissue areas of each adenocarcinoma pathological image, and generating a certain amount of sample data after preprocessing;
s3, constructing a multitask CNN model based on prior perception, wherein the multitask CNN model comprises two parallel branches: the gland structure segmentation branch and the benign and malignant automatic grading branch adopt the sample data to train the two branches of the multitask CNN model simultaneously;
s4, the prediction probability of the gland structure segmentation branch is used as prior information to be transmitted to the benign and malignant hierarchical branch, the benign and malignant hierarchical branch is restrained and guided to pay attention to the gland structure semantic content, and optimization of the multitask CNN model is completed.
As a preferred example, in step S2, the extracted image block is preprocessed by using a color migration method and a data enhancement method.
As a preferred example, the result of the segmentation of the glandular structure segmentation branch includes a result of a predicted probability of the glandular structure.
As a preferred example, the adenocarcinoma pathology image analysis model comprises an image receiving unit, a feature extraction unit, a glandular structure segmentation branch and a benign and malignant automatic grading branch;
the image receiving unit is used for receiving the preprocessed newly acquired adenocarcinoma pathological image and transmitting the received image to the feature extraction unit;
the feature extraction unit is constructed based on a ResNet50 backbone network and is used for extracting high-dimensional feature information from an adenocarcinoma pathological image and simultaneously sending the extracted high-dimensional feature information to a gland structure segmentation branch and a benign and malignant automatic grading branch;
the gland structure segmentation branch processes high-dimensional feature information to generate a plurality of corresponding feature maps, the feature maps are subjected to convolution processing through a 3 x 3 convolution layer to obtain small-scale segmentation results which are used as prior information and transmitted to the benign and malignant automatic segmentation branch, and meanwhile, a bilinear interpolation method is adopted to process the small-scale segmentation results to obtain final segmentation results which are consistent with the size of an input image;
the benign and malignant automatic grading branch carries out feature map extraction processing on high-dimensional feature information, meanwhile, gland structure semantic content is extracted from prior information sent by the gland structure segmentation branch, after a basic product is taken, the gland structure semantic content is converted into 2048 vectors through convolution overall pooling, and then grading results are obtained through full-connection layer processing.
The invention also provides an adenocarcinoma pathology image analysis device based on prior perception and multitask learning, which comprises an adenocarcinoma pathology image preprocessing module, an adenocarcinoma pathology image analysis model and an adenocarcinoma pathology image analysis model construction module;
the adenocarcinoma pathological image preprocessing module is used for performing corresponding preprocessing on a newly acquired adenocarcinoma pathological image, and the preprocessing comprises image block extraction and image block enhancement processing;
the adenocarcinoma pathology image analysis model comprises two branches in parallel: the method comprises a gland structure segmentation branch and a benign-malignant automatic grading branch, wherein the segmentation result of the gland structure segmentation branch is transmitted to the benign-malignant automatic grading branch as prior information, and the benign-malignant grading branch is restrained and guided to grade an adenocarcinoma pathological image after paying attention to the semantic content of the gland structure;
the adenocarcinoma pathology image analysis model construction module is used for constructing an adenocarcinoma pathology image analysis model based on a multitask learning method, and comprises the following steps:
the system comprises a sample data generating unit, a data processing unit and a data processing unit, wherein the sample data generating unit is used for acquiring a certain amount of digital adenocarcinoma pathological images, manually marking benign and malignant tissue areas and corresponding glandular tissue structures on each adenocarcinoma pathological image, extracting image blocks aiming at the benign and malignant tissue areas of each adenocarcinoma pathological image, and generating a certain amount of sample data after preprocessing;
a model construction unit, configured to construct a multitask CNN model based on prior sensing, where the multitask CNN model includes two parallel branches: the gland structure segmentation branch and the benign and malignant automatic grading branch adopt the sample data to train the two branches of the multitask CNN model simultaneously;
and the model optimization unit is used for transmitting the prediction probability of the gland structure segmentation branch as prior information to the benign and malignant hierarchical branches, restricting and guiding the benign and malignant hierarchical branches to pay attention to the semantic content of the gland structure, and completing the optimization of the multitask CNN model.
The invention also provides an adenocarcinoma pathology image analysis system based on prior perception and multitask learning, which comprises a processor and a memory which are connected with each other;
the memory has stored therein a computer-implemented program that is executed by the processor to perform the method of adenocarcinoma pathology image analysis based on a priori perception and multitask learning as previously described.
Compared with the prior art, the technical scheme of the invention has the following remarkable beneficial effects:
(1) the implementation of the method can reduce the physical, energy and time cost investment of the manual diagnosis of the pathologist.
(2) The realization of the method has higher automatic diagnosis accuracy.
(3) The method can simultaneously predict the glandular structure and the benign and malignant diagnosis result of the image.
(4) The glandular structure differentiation is an important basis for adenocarcinoma pathological diagnosis, and the prior information utilizes the effective glandular structure, which is highly consistent with the clinical pathological diagnosis basis; so that the method of the invention has strong interpretability when applied to clinical pathology.
(5) The multitask CNN model constructed by the method has high repeatability and robustness, and the difference of different pathologists in diagnosing the same case section is greatly reduced.
It should be understood that all combinations of the foregoing concepts and additional concepts described in greater detail below can be considered as part of the inventive subject matter of this disclosure unless such concepts are mutually inconsistent. In addition, all combinations of claimed subject matter are considered a part of the presently disclosed subject matter.
The foregoing and other aspects, embodiments and features of the present teachings can be more fully understood from the following description taken in conjunction with the accompanying drawings. Additional aspects of the present invention, such as features and/or advantages of exemplary embodiments, will be apparent from the description which follows, or may be learned by practice of specific embodiments in accordance with the teachings of the present invention.
Drawings
The drawings are not intended to be drawn to scale. In the drawings, each identical or nearly identical component that is illustrated in various figures may be represented by a like numeral. For purposes of clarity, not every component may be labeled in every drawing. Embodiments of various aspects of the present invention will now be described, by way of example, with reference to the accompanying drawings, in which:
fig. 1 is a flow chart of the adenocarcinoma pathology image analysis method based on prior perception and multitask learning of the present invention.
Fig. 2 is a schematic structural diagram of an adenocarcinoma pathology image analysis device based on prior perception and multitask learning according to the present invention.
Fig. 3 is a diagram illustrating the comparison result of whether the prior information is adopted to influence the benign and malignant classification of the automatic prediction image.
FIG. 4 is a schematic image of a benign and malignant tumor of adenocarcinoma.
Detailed Description
In order to better understand the technical content of the present invention, specific embodiments are described below with reference to the accompanying drawings.
Detailed description of the preferred embodiment
With reference to fig. 1, the present invention provides an adenocarcinoma pathology image analysis method based on prior sensing and multitask learning, where the image analysis method includes:
for a newly collected adenocarcinoma pathological image, extracting an image block, preprocessing the extracted image block, and sending the image block into a trained adenocarcinoma pathological image analysis model constructed based on a multi-task learning method, wherein the adenocarcinoma pathological image analysis model comprises two parallel branches: and (3) dividing the glandular structure and automatically grading the benign and malignant branches to obtain the glandular structure prediction result and the benign and malignant grading result.
The segmentation result of the gland structure segmentation branch is used as prior information to be transmitted to the benign and malignant automatic grading branch, and the benign and malignant grading branch is restrained and guided to grade the adenocarcinoma pathology image after paying attention to the semantic content of the gland structure.
The invention carries out parallel glandular structure segmentation and benign and malignant grading automatic prediction aiming at adenocarcinoma pathological images including colorectal adenocarcinoma H & E pathological images, and restrains the benign and malignant grading prediction of the images by utilizing the prediction probability result of the glandular structure, thereby not only reducing the physical, energy and time cost input of the pathological doctor in manual diagnosis, but also improving the accuracy of automatic diagnosis; in addition, the gold standard based on clinical pathological diagnosis reuses prior information, so that the interpretability of the gold standard applied to clinical pathology is improved.
In some examples, the process of constructing the adenocarcinoma pathology image analysis model includes the following steps:
s1, a quantity of digitized adenocarcinoma pathology images is acquired, and benign and malignant tissue regions and corresponding glandular tissue structures are manually marked on each adenocarcinoma pathology image. For example, benign and malignant tissue regions and corresponding glandular tissue structures are manually marked by a pathologist on digitized colorectal adenocarcinoma hepatoxylin & Eosin (H & E) pathology images.
And S2, extracting image blocks aiming at benign and malignant tissue areas of each adenocarcinoma pathological image, and generating a certain amount of sample data after preprocessing. Preferably, the extracted image block is preprocessed by image enhancement and the like by adopting a color migration method and a data enhancement method, so that the image is further segmented and graded.
S3, constructing a multitask CNN model based on prior perception, wherein the multitask CNN model comprises two parallel branches: and (3) performing glandular structure segmentation and benign and malignant automatic grading, and simultaneously training two branches of the multitask CNN model by adopting the sample data.
S4, the prediction probability of the gland structure segmentation branch is used as prior information to be transmitted to the benign and malignant hierarchical branch, the benign and malignant hierarchical branch is restrained and guided to pay attention to the gland structure semantic content, and optimization of the multitask CNN model is completed. In some examples, the segmented outcome of the glandular structure segmentation branch includes a predicted probabilistic outcome of the glandular structure.
Referring to fig. 2, the adenocarcinoma pathology image analysis model includes an image receiving unit, a feature extraction unit, a glandular structure segmentation branch, and a benign and malignant automatic grading branch.
The image receiving unit is used for receiving the preprocessed newly acquired adenocarcinoma pathological image and transmitting the received image to the feature extraction unit.
The feature extraction unit is constructed based on a ResNet50 backbone network and is used for extracting high-dimensional feature information from an adenocarcinoma pathology image and sending the extracted high-dimensional feature information to a gland structure segmentation branch and a benign and malignant automatic grading branch at the same time.
The gland structure segmentation branch processes high-dimensional feature information to generate a plurality of corresponding feature maps, the feature maps are subjected to convolution processing through a 3 x 3 convolution layer to obtain small-scale segmentation results, the small-scale segmentation results are used as priori information and are transmitted to the benign and malignant automatic segmentation branch, and meanwhile, a bilinear interpolation method is adopted to process the small-scale segmentation results to obtain final segmentation results consistent with the size of an input image.
The benign and malignant automatic grading branch carries out feature map extraction processing on high-dimensional feature information, meanwhile, gland structure semantic content is extracted from prior information sent by the gland structure segmentation branch, after a basic product is taken, the gland structure semantic content is converted into 2048 vectors through convolution overall pooling, and then grading results are obtained through full-connection layer processing.
For a pathological image, firstly, the pathological image is sent to a ResNet50 backbone network to extract high-dimensional features, then the pathological image is respectively and simultaneously used for gland structure segmentation branches and benign and malignant hierarchical branch tasks, the gland structure prediction probability of the gland structure segmentation branches is used as prior information and is transmitted to the benign and malignant hierarchical branches to restrict the gland structure semantic content which is concerned more, and finally, an image analysis result is obtained. It should be understood that the foregoing procedure is also applicable to the training optimization process of the adenocarcinoma pathology image analysis model.
FIG. 4 is a schematic image of a benign and malignant tumor of adenocarcinoma. Fig. 3 is a diagram illustrating the comparison result of whether the prior information is adopted to influence the benign and malignant classification of the automatic prediction image. Practice proves that the multitask CNN model based on the prior information perception method has better prediction efficiency on image benign and malignant grading.
Detailed description of the invention
The invention also provides an adenocarcinoma pathology image analysis device based on prior perception and multitask learning, which comprises an adenocarcinoma pathology image preprocessing module, an adenocarcinoma pathology image analysis model and an adenocarcinoma pathology image analysis model construction module.
The adenocarcinoma pathological image preprocessing module is used for correspondingly preprocessing a newly acquired adenocarcinoma pathological image, and the preprocessing comprises image block extraction and image block enhancement. Preferably, the adenocarcinoma pathology image preprocessing module can simultaneously preprocess the sample image and the newly acquired image, so as to reduce redundant functional modules.
The adenocarcinoma pathology image analysis model comprises two branches in parallel: the method comprises a gland structure segmentation branch and a benign-malignant automatic grading branch, wherein the segmentation result of the gland structure segmentation branch is transmitted to the benign-malignant automatic grading branch as prior information, and the benign-malignant grading branch is restrained and guided to grade an adenocarcinoma pathological image after the semantic content of the gland structure is concerned.
The adenocarcinoma pathology image analysis model construction module is used for constructing an adenocarcinoma pathology image analysis model based on a multitask learning method, and comprises the following steps:
(1) the sample data generating unit is used for acquiring a certain amount of digital adenocarcinoma pathological images, manually marking benign and malignant tissue areas and corresponding glandular tissue structures on each adenocarcinoma pathological image, extracting image blocks according to the benign and malignant tissue areas of each adenocarcinoma pathological image, and generating a certain amount of sample data after preprocessing.
(2) A model construction unit, configured to construct a multitask CNN model based on prior sensing, where the multitask CNN model includes two parallel branches: and (3) performing glandular structure segmentation and benign and malignant automatic grading, and simultaneously training two branches of the multitask CNN model by adopting the sample data.
(3) And the model optimization unit is used for transmitting the prediction probability of the gland structure segmentation branch as prior information to the benign and malignant hierarchical branches, restricting and guiding the benign and malignant hierarchical branches to pay attention to the semantic content of the gland structure, and completing the optimization of the multitask CNN model.
Detailed description of the preferred embodiment
The invention also refers to an adenocarcinoma pathology image analysis system based on prior perception and multitask learning, said image analysis system comprising a processor and a memory connected to each other.
The memory has stored therein a computer-implemented program that is executed by the processor to perform the method of adenocarcinoma pathology image analysis based on a priori perception and multitask learning as previously described.
In this disclosure, aspects of the present invention are described with reference to the accompanying drawings, in which a number of illustrative embodiments are shown. Embodiments of the present disclosure are not necessarily defined to include all aspects of the invention. It should be appreciated that the various concepts and embodiments described above, as well as those described in greater detail below, may be implemented in any of numerous ways, as the disclosed concepts and embodiments are not limited to any one implementation. In addition, some aspects of the present disclosure may be used alone, or in any suitable combination with other aspects of the present disclosure.
Although the present invention has been described with reference to the preferred embodiments, it is not intended to be limited thereto. Those skilled in the art can make various changes and modifications without departing from the spirit and scope of the invention. Therefore, the protection scope of the present invention should be determined by the appended claims.
Claims (7)
1. An adenocarcinoma pathology image analysis method based on prior perception and multitask learning is characterized in that the image analysis method comprises the following steps:
for a newly collected adenocarcinoma pathological image, extracting an image block, preprocessing the extracted image block, and sending the image block into a trained adenocarcinoma pathological image analysis model constructed based on a multi-task learning method, wherein the adenocarcinoma pathological image analysis model comprises two parallel branches: the gland structure segmentation branch and the benign and malignant automatic grading branch are used for simultaneously obtaining a gland structure prediction result and a benign and malignant grading result;
the segmentation result of the gland structure segmentation branch is used as prior information to be transmitted to the benign and malignant automatic grading branch, and the benign and malignant grading branch is restrained and guided to grade the adenocarcinoma pathology image after paying attention to the semantic content of the gland structure.
2. The method for analyzing the adenocarcinoma pathology image based on prior perception and multitask learning according to claim 1, wherein the process for constructing the adenocarcinoma pathology image analysis model comprises the following steps:
s1, collecting a certain amount of digital adenocarcinoma pathological images, and manually marking benign and malignant tissue areas and corresponding glandular tissue structures on each adenocarcinoma pathological image;
s2, extracting image blocks aiming at benign and malignant tissue areas of each adenocarcinoma pathological image, and generating a certain amount of sample data after preprocessing;
s3, constructing a multitask CNN model based on prior perception, wherein the multitask CNN model comprises two parallel branches: the gland structure segmentation branch and the benign and malignant automatic grading branch adopt the sample data to train the two branches of the multitask CNN model simultaneously;
s4, the prediction probability of the gland structure segmentation branch is used as prior information to be transmitted to the benign and malignant hierarchical branch, the benign and malignant hierarchical branch is restrained and guided to pay attention to the gland structure semantic content, and optimization of the multitask CNN model is completed.
3. The method for analyzing the adenocarcinoma pathology image based on prior perception and multitask learning according to claim 2, wherein in step S2, the extracted image blocks are preprocessed by using a color migration method and a data enhancement method.
4. The method for analyzing pathological image of adenocarcinoma based on prior perception and multitask learning according to any one of claims 1-3, characterized in that the segmentation result of said glandular structure segmentation branch comprises the predicted probability result of glandular structure.
5. The adenocarcinoma pathology image analysis method based on prior perception and multitask learning according to any one of claims 1-3, wherein the adenocarcinoma pathology image analysis model comprises an image receiving unit, a feature extraction unit, a glandular structure segmentation branch and a benign and malignant automatic grading branch;
the image receiving unit is used for receiving the preprocessed newly acquired adenocarcinoma pathological image and transmitting the received image to the feature extraction unit;
the feature extraction unit is constructed based on a ResNet50 backbone network and is used for extracting high-dimensional feature information from an adenocarcinoma pathological image and simultaneously sending the extracted high-dimensional feature information to a gland structure segmentation branch and a benign and malignant automatic grading branch;
the gland structure segmentation branch processes high-dimensional feature information to generate a plurality of corresponding feature maps, the feature maps are subjected to convolution processing through a 3 x 3 convolution layer to obtain small-scale segmentation results which are used as prior information and transmitted to the benign and malignant automatic segmentation branch, and meanwhile, a bilinear interpolation method is adopted to process the small-scale segmentation results to obtain final segmentation results which are consistent with the size of an input image;
the benign and malignant automatic grading branch carries out feature map extraction processing on high-dimensional feature information, meanwhile, gland structure semantic content is extracted from prior information sent by the gland structure segmentation branch, after a basic product is taken, the gland structure semantic content is converted into 2048 vectors through convolution overall pooling, and then grading results are obtained through full-connection layer processing.
6. An adenocarcinoma pathology image analysis device based on prior perception and multitask learning is characterized by comprising an adenocarcinoma pathology image preprocessing module, an adenocarcinoma pathology image analysis model and an adenocarcinoma pathology image analysis model building module;
the adenocarcinoma pathological image preprocessing module is used for performing corresponding preprocessing on a newly acquired adenocarcinoma pathological image, and the preprocessing comprises image block extraction and image block enhancement processing;
the adenocarcinoma pathology image analysis model comprises two branches in parallel: the method comprises a gland structure segmentation branch and a benign-malignant automatic grading branch, wherein the segmentation result of the gland structure segmentation branch is transmitted to the benign-malignant automatic grading branch as prior information, and the benign-malignant grading branch is restrained and guided to grade an adenocarcinoma pathological image after paying attention to the semantic content of the gland structure;
the adenocarcinoma pathology image analysis model construction module is used for constructing an adenocarcinoma pathology image analysis model based on a multitask learning method, and comprises the following steps:
the system comprises a sample data generating unit, a data processing unit and a data processing unit, wherein the sample data generating unit is used for acquiring a certain amount of digital adenocarcinoma pathological images, manually marking benign and malignant tissue areas and corresponding glandular tissue structures on each adenocarcinoma pathological image, extracting image blocks aiming at the benign and malignant tissue areas of each adenocarcinoma pathological image, and generating a certain amount of sample data after preprocessing;
a model construction unit, configured to construct a multitask CNN model based on prior sensing, where the multitask CNN model includes two parallel branches: the gland structure segmentation branch and the benign and malignant automatic grading branch adopt the sample data to train the two branches of the multitask CNN model simultaneously;
and the model optimization unit is used for transmitting the prediction probability of the gland structure segmentation branch as prior information to the benign and malignant hierarchical branches, restricting and guiding the benign and malignant hierarchical branches to pay attention to the semantic content of the gland structure, and completing the optimization of the multitask CNN model.
7. An adenocarcinoma pathology image analysis system based on prior perception and multitask learning, characterized in that the image analysis system comprises a processor and a memory connected to each other;
the memory stores a computer-implemented program, and the processor executes the computer-implemented program stored in the memory to perform the adenocarcinoma pathology image analysis method based on prior perception and multitask learning as claimed in any one of claims 1-5.
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CN112767355A (en) * | 2021-01-20 | 2021-05-07 | 北京小白世纪网络科技有限公司 | Method and device for constructing thyroid nodule Tirads grading automatic identification model |
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CN112435243A (en) * | 2020-11-26 | 2021-03-02 | 山东第一医科大学附属省立医院(山东省立医院) | Automatic analysis system and method for full-slice digital pathological image |
CN112767355A (en) * | 2021-01-20 | 2021-05-07 | 北京小白世纪网络科技有限公司 | Method and device for constructing thyroid nodule Tirads grading automatic identification model |
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