CN110331191A - Using the method for Real-Time Fluorescent Quantitative PCR Technique detection Qian Beimayang CTSB gene organization express spectra - Google Patents

Using the method for Real-Time Fluorescent Quantitative PCR Technique detection Qian Beimayang CTSB gene organization express spectra Download PDF

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CN110331191A
CN110331191A CN201910794203.5A CN201910794203A CN110331191A CN 110331191 A CN110331191 A CN 110331191A CN 201910794203 A CN201910794203 A CN 201910794203A CN 110331191 A CN110331191 A CN 110331191A
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ctsb
real
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quantitative pcr
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陈祥
周志楠
洪磊
敖叶
吴雨
唐文
韦仕南
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Guizhou University
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Abstract

The invention discloses a kind of methods using Real-Time Fluorescent Quantitative PCR Technique detection Qian Beimayang CTSB gene organization express spectra.The present invention have the characteristics that it is easy to operate, rapidly and efficiently, sensibility height, high specificity, solve the problems, such as PCR pollution, PCR thermally labile, high degree of automation, than using other method applicabilities are stronger, effect is more preferable.And the present invention is easily understood, convenient for operation.

Description

Using the expression of Real-Time Fluorescent Quantitative PCR Technique detection Qian Beimayang CTSB gene organization The method of spectrum
Technical field
The present invention relates to bioscience technology field, it is related specifically to detect Qian Bei using Real-Time Fluorescent Quantitative PCR Technique The method of Ma Yang CTSB gene organization express spectra.
Background technique
CTSB (Cathepsin B, cathepsin B) belongs to lysosomal cysteine inhibitor protein enzyme family member, It is closely connected from different biochemical function and Pathological barrier.Such as under the conditions of appropriate pH < 7, degradation is played in lysosome Albumen promotes the biological functions such as Apoptosis.Under extracellular pH suitable condition, its biological function, such as macrophage can be also played Cell, osteoclast, fibroblast and other noble cells.Some researches show that cathepsins in people and Mice Body, CTSB is necessary to embryo's normal development and uterine decidua;Also studies have reported that CTSB, CTSD etc. are in endometrium or gestation It is expressed in the conceptus of early stage sheep, there are also others research shows that CTSB gene is also expressed in the ovarian follicle of mouse, it is seen then that The development of CTSB gene pairs gonadal tissue plays a role.
Real-time fluorescence quantitative PCR is one kind in DNA amplification reaction, surveys each polymerase chain reaction with fluorescent chemical The method of product total amount after should recycling.The specific dna sequence in sample to be tested is quantitatively divided by internal reference or outer ginseng method The method of analysis.It is, by fluorescence signal, to be measured in real time to PCR process during PCR amplification.Due in PCR amplification There are linear relationships for the starting copy number of exponential time base, the Ct value of template and the template, so becoming quantitative foundation.With tradition Round pcr compared to Real-Time Fluorescent Quantitative PCR Technique efficiently solve traditional quantitative can only end point determination limitation, realize Each round circulation detects the intensity of first order fluorescence signal, and is recorded among computer software, by each sample Ct value It calculates, quantitative result is obtained according to standard curve.Therefore, real-time fluorescence quantitative PCR without internal standard be built upon two bases it On.The research of forefathers is it has been shown that CTSB gene pairs sheep follicular development has a certain impact, but its mechanism is not known; Using Real-Time Fluorescent Quantitative PCR Technique, express spectra of the numb sheep CTSB gene in Guizhou Province north in gonadal tissue is established, for explaining CTSB Expressional function mechanism of the gene in the numb sheep different tissues in Guizhou Province north has certain directive function.
Summary of the invention
For the deficiency of existing invention material, Guizhou Province is detected using Real-Time Fluorescent Quantitative PCR Technique the present invention provides a kind of The method of Bei Mayang CTSB gene organization express spectra, it have it is easy to operate, rapidly and efficiently, it is sensibility height, high specificity, effective Solve the problems, such as the features such as PCR pollution, PCR thermally labile, high degree of automation, more stronger than using other method applicabilities, Effect is more preferable.
In order to achieve the above object, the present invention is achieved by the following technical programs: using Real-Time Fluorescent Quantitative PCR Technique The method for detecting Qian Beimayang CTSB gene organization express spectra, includes the following steps:
(1) the numb sheep ewe hypothalamus in Guizhou Province north, the hypophysis, uterus, defeated ovum for extracting the single lamb of oestrus production after butchering, producing more lambs The total serum IgE of pipe and 5 kinds of gonadal tissues of ovary;It is total using ultramicrospectrophotometer and 1% agarose gel electrophoresis Detection and Extraction The specificity of RNA;
(2) the first chain of cDNA is synthesized according to Reverse Transcriptase kit to the satisfactory total serum IgE of extraction;And with reverse transcription The first chain of cDNA afterwards is template, carries out regular-PCR amplification to target gene CTSB and reference gene β-actin respectively;
(3) sequence of target gene CTSB upstream primer is 5'-TGACTCGCATGTA GGTTGC-3', downstream primer Sequence is 5'-TGGAGACGCTGTAGGAA-3';The sequence of reference gene β-actin upstream primer is 5'- AGATGTGGATCAGCAAGC AG-3', downstream primer sequence be 5'-CCAATCTCATCTCGTTTTCTG-3';With 1.5% Agarose gel electrophoresis is detected.
(4) purpose band that will test out is cut, and gel extraction product is connect with pMD19-T carrier, is then converted to large intestine Bacillus DH5 α competent cell will be accredited as positive bacterium solution and be sequenced, correct bacterium solution will be sequenced and carry out after the screening of blue hickie Expand numerous and plasmid to extract, and the recombinant plasmid of acquisition is subjected to quantitative dilution, using the recombinant plasmid after diluting as template, uses Real-time fluorescence quantitative PCR amplifying target genes CTSB and reference gene β-actin obtains standard curve and melting curve;It utilizes 2- Δ Δ Ct relative quantification method calculates the relative expression quantity of target gene CTSB, and detects differential expression amount.
When being expanded in step (2) to target gene CTSB and reference gene β-actin, PCR program are as follows: initial denaturation 95 DEG C of 5min, 95 DEG C of denaturation 30s, 55 DEG C of annealing 45s, 72 DEG C of extension 30s, 72 DEG C extend 7min eventually;Reaction system is 20 μ L, In include: 10 μ L of 2x Taq PCR Master Mix, 2 μ L of DNA profiling, upstream and downstream primer each 1 μ L, ddH2O 6μL。
The system that gel extraction product and pMD-19T carrier are attached in step (4) is 10 μ L, including pMDTM1 μ L of 19-T Vector, 4 μ L, Solution I ligase of gel extraction product, 5 μ L, 16 DEG C of metal baths connect 12h.
The method that competent escherichia coli cell is converted into step (4) is as follows:
1) bacillus coli DH 5 alpha competent cell is placed in after thawing on ice to jiggle and cell suspends;
2) the connection liquid that metal bath stays overnight connection is added in bacillus coli DH 5 alpha competent cell, and gently will with pipette tips Cell is mixed with liquid is connect, and placement stands 20min on ice;
3) heated at constant temperature 90s in 42 DEG C of water-baths is being put it into, cooled on ice 10min is placed after heating;
4) common liq culture medium is added into test tube, placement is shaken with 37 DEG C in case, and 200rpm vibrates 1h;
5) body fluid after vibrating is put into 5000rpm in refrigerated centrifuge and is centrifuged 5min, and centrifugation bottom of the tube has cell precipitation, uses Pipette tips sop up supernatant, blow and beat remaining culture medium back and forth with pipette tips and mix cell and culture medium;
6) cell suspension is uniformly coated in the solid medium tablets containing AMP containing X-gal and IPTG;
7) plate is placed into 1h in 37 DEG C of insulating boxs, culture 12-16h is inverted after planar surface liquid is dry.
The present invention compared with the existing technology, the present invention have it is easy to operate, rapidly and efficiently, sensibility height, high specificity, have Effect solves the problems, such as the features such as PCR pollution, PCR thermally labile, high degree of automation, than using other method applicabilities more By force, effect is more preferable.And the present invention is easily understood, convenient for operation.
Specific embodiment
Embodiment: using the method for Real-Time Fluorescent Quantitative PCR Technique detection Qian Beimayang CTSB gene organization express spectra; TRIzol Reagent kit is purchased from Guizhou Lv Meng Ying Chuan Biotechnology Co., Ltd;Liquid nitrogen, chloroform, 0.5%TAE buffering Liquid, isopropanol, 75% ethyl alcohol agarose, are commercially available;Fluorescent quantitation reagent UltraSYBR Mixture is purchased from and holds up biology section, section Skill Co., Ltd;Plastic recovery kit, miniplasmids extracts kit, LB culture medium, Reverse Transcriptase kit are purchased from Beijing Kang Weishi Discipline Biotechnology Co., Ltd.Ultraviolet-uisible spectrophotometer is purchased from U.S. Thermo Fisher Co., Ltd;Electrophoresis apparatus (DYY-2C type) is purchased from Beijing Liuyi Instrument Factory;PCR amplification instrument (C1000 TouchTM), real-time fluorescence quantitative PCR instrument (type Number be CFX96 Real-Time System), gel imaging system (Universal Hood II), be purchased from U.S. BIO-RAD Co., Ltd.
One, the extraction of Guizhou Province north numb sheep hypothalamus, hypophysis, uterus, fallopian tubal, ovary tissue total serum IgE:
(1) centrifuge tube of 1.5mL is marked according to different groups, 1mL Trizol is added in every pipe.
(2) it takes suitable tissue sample in the good mortar of washing and sterilizing for every group, liquid nitrogen is added in tissue abrasion, as far as possible Sufficiently, the powder of about 60mg is added in grinding in each centrifuge tube.
(3) centrifuge tube is acutely shaken and mixes 1-2min, juxtaposition stands 15min at room temperature sufficiently to crack tissue sample Product.
(4) 200 μ L chloroform solns are added in every pipe, 20s are mixed by inversion rapidly, and stand 15-20min, after standing 4 DEG C are put into high speed freezing centrifuge, and 12000rpm is centrifuged 15min.
(5) supernatant is taken after being centrifuged, about 500 μ L is taken to be put into a new centrifuge tube.
(6) the frost isopropanol of 500 μ L is added in every pipe, is mixed by inversion 15s, stands 10min on ice, with 13000rpm, 4 DEG C, it is centrifuged 10min, abandons supernatant, precipitating is total serum IgE.
(7) every pipe is added 75% ethanol solution of 1mL frost, washing precipitating RNA, with supercentrifuge with 7500rpm, 4 DEG C of centrifugation 5min abandon supernatant.
(8) ethanol solution extra in pipe abandon is inhaled, superclean bench is placed in and dries, about 30min.
(9) the RNAse-free water of 30 μ L is added in every pipe, is stored at room temperature 5min, dissolution RNA precipitating.
(10) the dissolved RNA sample of 1 μ L is taken, with the concentration and purity of the total serum IgE of ultramicrospectrophotometer Detection and Extraction, 2 μ LRNA samples are separately taken to carry out agarose gel electrophoresis detection, remaining total serum IgE is saved backup in -80 DEG C of refrigerators.
Two, the synthesis of the first chain of cDNA
Using Transcriptor First Strand cDNA Synthesis Kit Reverse Transcriptase kit by extraction RNA reverse transcription synthesizes the first chain of cDNA.Reverse transcription system be 20 μ L, including 4 μ L of dNTP mix 2.5mmEach, 2 μ L of Primer mix, 1 μ L of RNA template, 5 × RT Buffer, 4 μ L, 2 μ L of DTT 0.1m, 1 μ L of HiFi Script, supplement RNase-Free water 6μL.PCR reaction condition is 42 DEG C of incubation 50min, and 85 DEG C of incubation 5min are saved in -20 DEG C of refrigerators. PCR product is detected using 1.5% agarose gel electrophoresis.
Three, the design and synthesis of primer
According to goat Capra hircus (goat) CTSB gene order (accession number: XM_ issued on GenBank 018051779.1);Primer information is shown in Table 1.Choose the reference gene that β-actin is this test.Primer transfers to the raw work in Shanghai raw The synthesis of object engineering services limited liability company.
1 primer details of table
Four, the foundation of PCR amplification and melting curve
(1) when being expanded to target gene CTSB and reference gene β-actin, PCR program are as follows: 95 DEG C of initial denaturation 5min, 95 DEG C of denaturation 30s, 55 DEG C of annealing 45s, 72 DEG C of extension 30s, 72 DEG C extend 7min eventually;Reaction system is 20 μ L, wherein It include: 10 μ L of 2x Taq PCR Master Mix, 2 μ L of DNA profiling, upstream and downstream primer each 1 μ L, ddH2O 6μL。
(2) it by the cutting of the purpose band of PCR product and weighing in test tube, and is added according to the two volumes of glue weight Buffer PG solution, 50 DEG C of heating water bath 2-3min and mixing of turning upside down are presented until blob of viscose is in vitro completely melt Acquired solution is transferred to 13000rpm in adsorption column after yellow liquid and is centrifuged 1min, the liquid in collecting pipe is discarded, will adsorb Buffer PW, the 13000rpm room temperature centrifugation 1min of 450 μ L is added in column, outwells the liquid in collecting pipe, repeats the above steps Once, with 1300rpm room temperature be centrifuged 1min, outwell the liquid in collecting pipe, by adsorption column be put into a new 1.5mL from In heart pipe, the Buffer EB solution of 30-50 μ L is added into adsorption column, 13000rpm room temperature is centrifuged 1min, and the solution of collection is For cDNA solution.- 20 DEG C are placed in save or for follow-up test
(3) DNA solution obtained after gel extraction and pMD-19T carrier being attached, system is 10 μ L, including pMDTM1 μ L of 19-T Vector, 4 μ L, Solution I ligase of gel extraction product, 5 μ L, 16 DEG C of metal baths connect 1-12h.
(4) by connect liquid be converted into competent escherichia coli cell method it is as follows: 1. by 100 μ L bacillus coli DH 5 alphas Competent cell is placed in thaw on ice after jiggle cell suspend.2. large intestine is added in the connection liquid that metal bath stays overnight connection In bacillus DH5 α competent cell, and gently cell is mixed with liquid is connect with pipette tips, placement stands 20min on ice.3. will It is put into heated at constant temperature 90s in 42 DEG C of water-baths, and cooled on ice 10min is placed after heating.4. it is common that 600 μ L are added into test tube Fluid nutrient medium, placement are shaken with 37 DEG C in case, and 200rpm vibrates 1h.5. the body fluid after oscillation is put into refrigerated centrifuge 5000rpm is centrifuged 5min, it is seen that centrifugation bottom of the tube has cell precipitation, sops up 500 μ L supernatants with pipette tips, is blown and beaten back and forth with pipette tips Remaining culture medium mixes cell and culture medium.Contain AMP containing X-Gal and IPTG 6. being uniformly coated in cell suspension Solid medium tablets on.7. plate is placed 1h in 37 DEG C of insulating boxs, culture 12- is inverted after planar surface liquid is dry 16h。
(5) after plate is inverted culture 12-16h, white colony is picked out in 5mL fluid nutrient medium with ampicillin In, and be put into shaking table and shake 37 DEG C of culture 12-16h of bacterium, to liquid muddiness, after regular-PCR and agarose gel electrophoresis detection, Positive bacterium solution containing target fragment is sent to Shanghai Sheng Gong bioengineering Co., Ltd to be sequenced and is identified, will identify correct bacterium solution It carries out expanding the extraction of numerous and plasmid, by the recombinant plasmid dilution after extraction in order to real-time fluorescence quantitative PCR amplification.
Five, the optimization of real time fluorescence quantifying PCR method
Real-Time Fluorescent Quantitative PCR Technique detect CTSB gene specific as a result, it has been found that.It is contaminated using SYBR Green I fluorescence Material method carries out real-time fluorescence quantitative PCR reaction and 3 repetitions is arranged, and the amplification curve of generation is smooth, S-type, overall trend one It causes, clip size is consistent, and amplification property is preferable.Melting curve is in unimodal, and peak value is preferable, nothing but specific amplification products and primer two Aggressiveness, without mixed and disorderly, distortion band.Prove that CTSB gene specific is good, result of study has convincingness.
Six, detection CTSB gene is in the numb sheep hypothalamus of single lamb and more lamb Guizhou Provinces north, hypophysis, uterus, 5 fallopian tubal, ovary groups Expression quantity in knitting
Real-time fluorescence quantitative PCR reaction is carried out using SYBR Green I fluorescent dye determination.Real-time fluorescence quantitative PCR reaction System is 10 μ L, including 1 μ L of cDNA template, SYBR Premix Ex Taq TM enzyme (2 ×) 5.5 μ L, upstream and downstream primer Each 0.5 μ L, ddH2O 2.5 μL.Quantitative fluorescent PCR response procedures are as follows: 95 DEG C of initial denaturation 1min, 95 DEG C of denaturation 15 s, and 55 DEG C Anneal 15s, and 60 DEG C of extension 32s, 39 circulations, 3 repetitions are arranged in each sample, and negative control is arranged in each test, Detect the practical expression that CTSB gene is organized in hypothalamus, hypophysis, uterus, fallopian tubal and 5, ovary.Utilize 2- Δ Δ Ct The relative expression quantity of relative quantification method calculating target gene: 2- Δ Δ Ct=2- [(purpose sample Ct- reference gene Ct)-(control Sample Ct- reference gene Ct)], single lamb, more lamb samples are using the numb sheep inferior colliculus cerebral tissue in Guizhou Province north as standard.Use SPSS 20.0 One-Way ANOVA carries out one-way analysis of variance in software, carries out significance test of difference using LSD method, test result is adopted It is indicated with mean+SD, it is extremely significant using P < 0.01 as difference with P < 0.05 for significance of difference judgment criteria The judgment criteria of property.
The present invention is not limited to above-mentioned preferred forms, and other forms can be obtained in anyone under the inspiration of the present invention Product.But no matter make any variation in terms of catalyst composition, structure and proportion, it is all have it is identical with the application or Similar technical solution, all belongs to the scope of protection of the present invention.
Sequence table
<110>Guizhou University
<120>using the method for Real-Time Fluorescent Quantitative PCR Technique detection Qian Beimayang CTSB gene organization express spectra
<160> 4
<170> SIPOSequenceListing 1.0
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<212> DNA
<213>goat (Nelumbo nucifera)
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tgactcgcat gtaggttgc 19
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<212> DNA
<213>goat (Nelumbo nucifera)
<400> 2
tggagacgct gtaggaa 17
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<212> DNA
<213>goat (Nelumbo nucifera)
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<212> DNA
<213>goat (Nelumbo nucifera)
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ccaatctcat ctcgttttct g 21

Claims (4)

1. a kind of method using Real-Time Fluorescent Quantitative PCR Technique detection Qian Beimayang CTSB gene organization express spectra, feature It is: includes the following steps:
(1) extract the oestrus after butchering produce single lamb, the numb sheep ewe hypothalamus in Guizhou Province north for producing more lambs, hypophysis, uterus, fallopian tubal and The total serum IgE of 10 gonadal tissues of ovary;Using ultramicrospectrophotometer and 1% agarose gel electrophoresis Detection and Extraction total serum IgE Specificity, integrality and purity;
(2) the first chain of cDNA is synthesized according to Reverse Transcriptase kit to the satisfactory total serum IgE of extraction;And with reverse transcription after The first chain of cDNA is template, carries out regular-PCR amplification to target gene CTSB and reference gene β-actin respectively;
(3) sequence of target gene CTSB upstream primer is 5'-TGACTCGCATGTAGGTTGC-3', the sequence of downstream primer is 5'-TGGAGACGCTGTAGGAA-3';The sequence of reference gene β-actin upstream primer is 5'- AGATGTGGATCAGCAAGCAG-3', downstream primer sequence be 5'-CCAATCTCATCTCGTTTTCTG-3';PCR amplification produces Object is detected using 1.5% agarose gel electrophoresis.
(4) purpose band that electrophoresis detection goes out is cut, gel extraction product is connect with pMD19-T carrier, is then converted to large intestine The bacterium solution for being accredited as positive is sequenced after the screening of blue hickie, correct bacterium solution will be sequenced by bacillus DH5 α competent cell Expand it is numerous extract work with plasmid, and the recombinant plasmid of acquisition is subjected to quantitative dilution, using the recombinant plasmid after diluting as Template is obtained standard curve and is melted using real-time fluorescence quantitative PCR amplifying target genes CTSB and reference gene β-actin Curve;The relative expression quantity of target gene CTSB is calculated using 2- Δ Δ Ct relative quantification method, and detects differential expression amount.
2. according to claim 1 using the expression of Real-Time Fluorescent Quantitative PCR Technique detection Qian Beimayang CTSB gene organization The method of spectrum, it is characterised in that: when being expanded in step (2) to target gene CTSB and reference gene β-actin, PCR journey Sequence are as follows: 95 DEG C of 5min of initial denaturation, 95 DEG C of denaturation 30s, 55 DEG C of annealing 45s, 72 DEG C of extension 30s, 72 DEG C extend 7min eventually;Reactant System is 20 μ L, including: 2x Taq PCR Master Mix 10 μ L, 2 μ L of DNA profiling, each 1 μ L of upstream and downstream primer, ddH2O 6μL。
3. according to claim 1 using the expression of Real-Time Fluorescent Quantitative PCR Technique detection Qian Beimayang CTSB gene organization The method of spectrum, it is characterised in that: the system that gel extraction product and pMD-19T carrier are attached in step (4) is 10 μ L, In include pMDTM1 μ L of 19-T Vector, 4 μ L, Solution I ligase of gel extraction product, 5 μ L, 16 DEG C of metal bath connections 12h。
4. according to claim 1 using the expression of Real-Time Fluorescent Quantitative PCR Technique detection Qian Beimayang CTSB gene organization The method of spectrum, it is characterised in that: the method that competent escherichia coli cell is converted into step (4) is as follows:
1) bacillus coli DH 5 alpha competent cell is placed in after thawing on ice to jiggle and cell suspends;
2) the connection liquid that metal bath stays overnight connection is added in bacillus coli DH 5 alpha competent cell, and with pipette tips gently by cell It is mixed with liquid is connect, placement stands 20min on ice;
3) heated at constant temperature 90s in 42 DEG C of water-baths is being put it into, cooled on ice 10min is placed after heating;
4) common liq culture medium is added into test tube, placement is shaken with 37 DEG C in case, and 200rpm vibrates 1h;
5) body fluid after vibrating is put into 5000rpm in refrigerated centrifuge and is centrifuged 5min, and centrifugation bottom of the tube has cell precipitation, uses pipette tips Supernatant is sopped up, remaining culture medium is blown and beaten back and forth with pipette tips and mixes cell and culture medium;
6) cell suspension is uniformly coated in the solid medium tablets containing AMP containing X-gal and IPTG;
7) plate is placed into 1h in 37 DEG C of insulating boxs, culture 12-16h is inverted after planar surface liquid is dry.
CN201910794203.5A 2019-08-27 2019-08-27 Using the method for Real-Time Fluorescent Quantitative PCR Technique detection Qian Beimayang CTSB gene organization express spectra Pending CN110331191A (en)

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* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN114015709A (en) * 2021-11-04 2022-02-08 塔里木大学 Application of sheep CTSD gene in regulation and control of initiation of primitive phase
CN114015709B (en) * 2021-11-04 2023-04-25 塔里木大学 Application of sheep CTSD gene in regulation and control of primordial initiation

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