CN110066723A - Gene sequencing chip, equipment, manufacturing method - Google Patents

Gene sequencing chip, equipment, manufacturing method Download PDF

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Publication number
CN110066723A
CN110066723A CN201910367836.8A CN201910367836A CN110066723A CN 110066723 A CN110066723 A CN 110066723A CN 201910367836 A CN201910367836 A CN 201910367836A CN 110066723 A CN110066723 A CN 110066723A
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CN
China
Prior art keywords
gene sequencing
structures
microcellular structure
substrate
blockage
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CN201910367836.8A
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Chinese (zh)
Inventor
张笑
谷新
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BOE Technology Group Co Ltd
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BOE Technology Group Co Ltd
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Application filed by BOE Technology Group Co Ltd filed Critical BOE Technology Group Co Ltd
Priority to CN201910367836.8A priority Critical patent/CN110066723A/en
Publication of CN110066723A publication Critical patent/CN110066723A/en
Priority to PCT/CN2020/087946 priority patent/WO2020224511A1/en
Pending legal-status Critical Current

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing

Abstract

The present invention provides a kind of gene sequencing chip, equipment, manufacturing method, belongs to gene sequencing technology field, and can at least partly solving the problems, such as existing gene sequencing chip, there are crosstalks in application.Gene sequencing chip of the invention, including substrate and the multiple microcellular structures being arranged in substrate, blockage structures are provided between adjacent microcellular structure, blockage structures are used to stop the light emission of the bottom hole from microcellular structure to detection unit corresponding to the blockage structures closed on.

Description

Gene sequencing chip, equipment, manufacturing method
Technical field
The invention belongs to gene sequencing technology fields, and in particular to a kind of gene sequencing chip, a kind of gene sequencing equipment, A kind of manufacturing method of gene sequencing chip.
Background technique
Gene sequencing, which refers to, analyzes specific gene (DNA molecular with certain length) by physics, chemistry, biological means In base put in order.Only include four kinds of bases in DNA molecular, is adenine (A), thymidine (T), cytimidine respectively (C)
With guanine (G).Since being sequenced first generation Sanger method in 1977, gene sequencing technology has been developed three Generation, including the third using Illumina as the second generation high throughput sequencing technologies of representative, based on Pacific Biosciences For single-molecule sequencing technology.Although the sequencing technologies in different generations have the characteristics that it is respective, it is all for principle is sequenced Sequencing be all based on chain termination method, that is, by the chemical modification to a certain base analog (one of A, T, C, G), Terminate the chain synthesis reaction after it.
Since different classes of base has the fluorophor of different colours, shine when using up excitation fluorophor When, the type of base can be determined by detecting luminescent color, to obtain the sequence of testing gene.
Shown in fig. 1 is the cross-section structure of traditional gene sequencing equipment.Battle array is formed in the substrate 1 of gene sequencing chip Multiple microcellular structures 2 of column arrangement (arrangement mode is without being limited thereto).The gene sequencing chip is arranged in gene sequencing equipment It is interior, one detection unit 5 of each 2 face of microcellular structure.DNA molecular 7 to be detected is placed in microcellular structure 2.It is to be detected DNA molecular 7 and microcellular structure 2 in fluorescent marker fluorophor 6 (specially base group) combination.In illumination item Under part, fluorophor 6 shines.And it is diverging, the angle of emergence (angle of radiation direction and 1 normal of substrate) that fluorophor 6, which shines, Lesser light is detected by the detection unit 5 of face, is analyzed for the sequence to DNA molecular 7.Specifically, detection is single Member 5 needs the strength information and wavelength information of detection light.The biggish light of the angle of emergence can be mapped to the detection unit 6 closed on.Such as In Fig. 1, the light that the fluorophor 6 that the DNA molecular 7 in the microcellular structure 2 in middle position currently shines is issued has one Divide detection unit 5 corresponding to the microcellular structure 2 for being mapped to and closing on.Issuing light in different microcellular structures 2 as a result, can mutual crosstalk. This can reduce the accuracy of gene sequencing result, and increase the subsequent calculation amount for calculating analysis.
Summary of the invention
The present invention at least partly solves the problems, such as that there are crosstalks in existing gene sequencing chip, provide a kind of gene sequencing Chip, gene sequencing equipment, the manufacturing method of gene sequencing chip.
Solving technical solution used by present invention problem is a kind of gene sequencing chip, including substrate and setting Multiple microcellular structures in substrate are provided with blockage structures between adjacent microcellular structure, and blockage structures are for stopping From microcellular structure bottom hole light emission to detection unit corresponding to the blockage structures closed on.
Optionally, blockage structures include extinction structure or reflective structure.
Optionally, orthographic projection of the microcellular structure in substrate is surrounded in orthographic projection of the blockage structures in substrate.
Optionally, the boundary of the close microcellular structure of orthographic projection of the blockage structures in substrate and the microcellular structure are in base The overlapping margins of orthographic projection on bottom.
Optionally, the boundary of the close microcellular structure of orthographic projection of the blockage structures in substrate and the microcellular structure are in base The boundary of orthographic projection on bottom is at a distance of set distance.
It optionally, further include the finishing coat for covering blockage structures, finishing coat in gene sequencing for connecing By surface modification.
Optionally, the boundary of the close microcellular structure of orthographic projection of the finishing coat in substrate and the microcellular structure are in base The overlapping margins of orthographic projection on bottom.
Solving technical solution used by present invention problem is a kind of gene sequencing equipment, is surveyed including above-mentioned gene Sequence chip.
Solve the manufacturing method that technical solution used by present invention problem is a kind of gene sequencing chip, comprising: The step of multiple microcellular structures are formed on the substrate;The step of blockage structures are formed between adjacent microcellular structure, photoresist Gear structure is used to stop the light emission of the bottom hole from microcellular structure to detection unit corresponding to the blockage structures closed on.
Optionally, further include the steps that forming the finishing coat of covering blockage structures, wherein finishing coat is used for Receive surface modification in gene sequencing.
Detailed description of the invention
Fig. 1 is the structural schematic diagram of existing gene sequencing chip;
Fig. 2 a is a kind of sectional view of gene sequencing chip of the embodiment of the present invention;
Fig. 2 b is the working principle diagram that gene sequencing chip shown in Fig. 2 a is applied to gene sequencing equipment;
Fig. 3 a is the sectional view of another gene sequencing chip of the embodiment of the present invention;
Fig. 3 b is the working principle diagram that gene sequencing chip shown in Fig. 3 a is applied to gene sequencing equipment;
Fig. 3 c is the birds-eye perspective of the gene sequencing chip of Fig. 3 a;
Fig. 3 d is a kind of deformation of gene sequencing chip shown in Fig. 3 a;
Fig. 4 is sectional view of the gene sequencing chip shown in Fig. 2 a in the intermediate state of manufacture;
Fig. 5 a- Fig. 5 b is sectional view of the gene sequencing chip shown in Fig. 3 a in the different intermediate state of manufacture;
Wherein, appended drawing reference are as follows: 1, substrate;2, microcellular structure;3, blockage structures;3 ', photoresist layer;4, surface Decorative layer;4 ', face finish material layer;5, detection unit;6, fluorophor;7, DNA molecular;D, diameter;H, height;P, week Phase;A, first thickness;D, second thickness;B, the first spacing.
Specific embodiment
Technical solution in order to enable those skilled in the art to better understand the present invention, with reference to the accompanying drawing and specific embodiment party Present invention is further described in detail for formula.
In the present invention, " patterning processes " refer to the step of forming the structure with specific figure, can be photoetching work Skill, photoetching process include forming material layer, coating photoresist,
Exposure, development, etching, photoresist lift off and etc. in one or more steps;Certainly, " patterning processes " can also be pressure Other techniques such as print technique, InkJet printing processes.
Embodiment 1:
A and Fig. 3 a referring to fig. 2, the present embodiment provides a kind of gene sequencing chips, including substrate 1 and setting are in substrate 1 On multiple microcellular structures 2, blockage structures 3 are provided between adjacent microcellular structure 2, blockage structures 3 are for stopping hair From the light emission of the bottom hole of microcellular structure 2 to detection unit 5 corresponding to the blockage structures 3 closed on.
The material of substrate 1 is, for example, glass, silicon, organic resin class material.1 material of substrate of organic resin class is, for example, poly- Methyl methacrylate (PMMA).
As shown in Figure 2 a, the boundary of microcellular structure 2 can be formed in substrate 1 and the light blocking knot in substrate 1 On structure 3, finishing coat 4.In another example the boundary of microcellular structure 2 is formed in substrate 1 and finishing coat 4 shown in Fig. 3 a.When The bottom hole of right microcellular structure 2 is also possible to be formed by the other structures between substrate 1 and blockage structures 3, i.e., in substrate 1 and light There is also other layer structures between barrier structure 3.Such as it is formed with multi-layered electrode layer, multilayer dielectric layer, micropore on the base 1 The bottom hole of structure 2 is formed on the insulating layer of top layer.How the present invention forms without limitation microcellular structure 2.Certainly, surface Decorative layer 4 is also optional layer structure.
Blockage structures 3 are set between adjacent microcellular structure 2, it is big its object is to be issued to fluorophor 6 The light of the angle of emergence is stopped, and prevents this part light emission to detection unit 5 corresponding to the microcellular structure 2 closed on.So inhibit Or to avoid crosstalk bad.
Optionally, blockage structures 3 include extinction structure or reflective structure.I.e. blockage structures 3 can be by fluorophor 6 The light absorption of the larger angle of emergence issued may be selected light absorbent and form blockage structures 3.Optionally light absorbent is, for example, The organic resin class material of black.The optional material of reflective structure is, for example, the light reflecting metallic materials such as aluminium (Al) or silver-colored (Ag).Only If specific pattern can be formed by patterning processes and energy extinction or reflective material may be used as the material of blockage structures 3 Material.
B and Fig. 3 b referring to fig. 2, the arrow in figure indicate the light that fluorophor 6 issues.For the light of larger shooting angle, It is stopped by the blockage structures 3 between adjacent cells structure 2.
Blockage structures 3 also mean that as viewed from the side of gene sequencing chip between adjacent cells structure 2, Blockage structures 3 are at least partly Chong Die with microcellular structure 2.The case where blockage structures 3 are formed by light absorbent, more Pay close attention to blockage structures 3 upper surface at a distance from 2 bottom hole of microcellular structure.Blockage structures 3 are formed by reflectorized material The case where, then be more concerned about the lower surface of blockage structures 3 at a distance from the bottom hole of microcellular structure 2.Specific blockage structures 3 How size and location are arranged, and those skilled in the art can make the adjustment of adaptability, and which is not limited by the present invention.When So, optionally, according to Fig. 2 a and Fig. 3 a current visual angle, if blockage structures 3 are formed by reflectorized material, its bottom surface is answered Higher than the bottom surface of microcellular structure 2.
The arrangement mode of microcellular structure 2 on the base 1 can be as shown in Figure 3c as in cross-arranging type distribution (or square Configuration distribution).The certain arrangement mode of microcellular structure 2 on the base 1 is not limited to this.Those skilled in the art can do this Flexibly setting out.
Diameter D, height H and the period P of microcellular structure 2 are other in the micron-scale.Representative value is, for example, diameter D and height H is 1um, period P are 3um.
The diameter D of preferred microporous structure 2 is arranged within the scope of 100nm~2um, and the period P setting of microcellular structure 2 exists In the range of 200nm~5um.The height H of microcellular structure 2 is arranged within the scope of 100nm~2um.The thickness of blockage structures 3 is remembered For second thickness d, the thickness of finishing coat 4 is denoted as first thickness a, bottom of the bottom surface of blockage structures 3 apart from microcellular structure 2 The distance in face is denoted as the first spacing b, these can be according to actual needs flexible setting.
As long as can inhibit one of them it should be noted that blockage structures 3 are arranged between adjacent cells structure 2 Detection unit 5 corresponding to the fluorescence directive adjacent cells structure 2 issued in microcellular structure 2.Such as it can be only adjacent Blockage structures 3 are arranged in partial region between microcellular structure 2.If the height H setting of the top surface or bottom surface of blockage structures 3 Properly, the shape design of blockage structures 3 is suitable, even if blockage structures 3 only wrap up the partial region of microcellular structure 2, then Detection unit 5 corresponding to microcellular structure 2 for the secondary neighbour in addition to 4 microcellular structures 2 of arest neighbors, and not by dry It disturbs.As shown in Figure 3d, light blocking knot is only arranged in microcellular structure 2 in the partial region opposite with the microcellular structure 2 of arest neighbors Structure 3 is not provided with blockage structures 3 in the region opposite with the microcellular structure 2 of secondary neighbour.Blockage structures 3 can so be reduced Material cost.
Optionally, the orthographic projection of microcellular structure 2 on the base 1 is surrounded in the orthographic projection of blockage structures 3 on the base 1.
As shown in Figure 2 a, the boundary of the close microcellular structure 2 of the orthographic projection of blockage structures 3 on the base 1 and the micropore The overlapping margins of the orthographic projection of structure 2 on the base 1.That is the boundary towards microcellular structure 2 of blockage structures 3 and microcellular structure What 2 boundary was generally flush with.
Such as shown in Fig. 3 c, the boundary of the close microcellular structure 2 of the orthographic projection of blockage structures 3 on the base 1 is micro- with this The boundary of the orthographic projection of pore structure 2 on the base 1 is at a distance of set distance.That is the boundary towards microcellular structure 2 of blockage structures 3 The boundary of opposite microcellular structure 2 extends out.In this case, in subsequent applications, blockage structures 3 are not contact with reagent 's.
It illustrates, in Fig. 3 c, since blockage structures 3 are covered by finishing coat 4, therefore only depicts photoresist with dotted line The boundary of structure 3 is kept off, the shape of photoresist layer 3 understands in combination with Fig. 3 a.
In conjunction with Fig. 3 c, the shape of blockage structures 3 can also for example be changed to intersect anyhow latticed.Certainly, in this way If the production of mask can be simpler.Those skilled in the art can stop directive adjacent micro- guaranteeing blockage structures 3 Under the premise of detection unit 5 corresponding to pore structure 2, the material cost of blockage structures 3, suitably reduction blockage structures are considered 3 areas occupied on the base 1.Those skilled in the art can make further on the basis of the present embodiment institute offer scheme Optimization.
It optionally, further include the finishing coat 4 for covering blockage structures 3, finishing coat 4 is used in gene sequencing Receive surface modification.The chemical compatibility for the reagent being applied in the material and gene sequencing of finishing coat 4 is better than photoresist Keep off structure 3.The material of finishing coat 4 is, for example, the nitride etc. of the oxide of silicon, silicon, in some embodiments, surface The material of decorative layer 4 is also possible to organic resin.In most cases, finishing coat 4 is light transmission, therefore when being designed, It is more concerned about the size i.e. location parameter of blockage structures 3.
Optionally, the boundary of the close microcellular structure 2 of the orthographic projection of finishing coat 4 on the base 1 and the microcellular structure 2 The overlapping margins of orthographic projection on the base 1.I.e. as shown in Figure 2 a, the boundary towards microcellular structure 2 of finishing coat 4 with it is micro- What pore structure 2 was generally flush with, finishing coat 4, blockage structures 3,1 material of part of substrate together form the side of microcellular structure 2 Face.Certainly, situation as shown in Figure 3a, finishing coat 4 and 1 material of part of substrate together form the side of microcellular structure 2.
Embodiment 2:
The present embodiment provides a kind of gene sequencing equipment, the gene sequencing chip including embodiment 1.
Gene sequencing chip provided by embodiment 1 is applied in gene sequencing equipment.Only show in Fig. 2 b and Fig. 3 b The detection unit 5 in gene sequencing equipment is gone out.Except the part of gene sequencing chip can be configured according to the prior art, therefore This will not be repeated here.
It can effectively inhibit or avoid cross-interference issue using the gene sequencing equipment of the gene sequencing chip.
Embodiment 3:
The present embodiment provides a kind of manufacturing methods of gene sequencing chip, comprising: forms multiple microcellular structures on the base 1 2 the step of;The step of blockage structures 3 are formed between adjacent microcellular structure 2, blockage structures 3 are for stopping from micro- The light emission of the bottom hole of pore structure 2 is to detection unit 5 corresponding to the blockage structures 3 closed on.The gene being so prepared is surveyed Sequence chip can effectively avoid cross-interference issue.
Optionally, further include the steps that forming the finishing coat 4 of covering blockage structures 3, wherein finishing coat 4 For receiving surface modification in gene sequencing.In this way, the reagent and the surface that carry DNA molecular 7 in subsequent applications can be made Decorative layer 4 is combined to complete gene sequencing.
The example of two introduced below specific manufacturing processes.Although in the two examples, the bottom hole of microcellular structure 2 is It is made of substrate 1, but be not limited to this in practical application.
Example 1:
Step S11,3 ' of photoresist layer, 4 ' of face finish material layer are sequentially formed on the base 1.After the completion of the step Product form referring to fig. 4.
Step S12, using a patterning processes to 3 ' of photoresist layer, 4 ' of face finish material layer, substrate 1 at Reason obtains microcellular structure 2.Specifically, the pattern of photoresist can be formed using one of mask using photoetching process, certainly The pattern of etching mask can be formed using the technique of nano impression.Then the region leaked out cruelly to photoresist carries out dry etching or wet It carves, 1 material of substrate of 4 ' of face finish material layer, 3 ' of photoresist layer and partial depth in the sudden and violent drain region of removal photoresist Material, obtains microcellular structure 2 shown in such as Fig. 2 a.
Using this manufacture, the quantity of mask plate is few.
Example 2:
Step S21, blockage structures 3 are formed on the base 1 using patterning processes.Specifically it can be first on the base 1 One layer of 3 ' of photoresist layer is formed, then obtains the pattern of photoresist by way of photoetching on 3 ' of the photoresist layer Or etching mask is formed by way of nano impression.The region leaked cruelly is carved followed by the technique of dry etching or wet etching Erosion, 3 ' of photoresist layer removed in the sudden and violent drain region of photoresist obtain blockage structures 3.Product form after the completion of the step Referring to Fig. 5 a.
Step S22, referring to Fig. 5 b, 4 ' of face finish material layer of covering blockage structures 3 is formed.Deposition can specifically be passed through Technique form the nitride of the oxide of one layer of silicon, silicon.Coating can certainly be used and cured mode forms one layer and has Machine resin.
Step S23, the base of 4 ' of face finish material layer and partial depth in patterning processes removal partial region are utilized 1 material of bottom, to obtain microcellular structure 2.Blockage structures 3 are located at except the partial region, to obtain knot as shown in Figure 3a Structure.
It is understood that the principle that embodiment of above is intended to be merely illustrative of the present and the exemplary implementation that uses Mode, however the present invention is not limited thereto.For those skilled in the art, essence of the invention is not being departed from In the case where mind and essence, various changes and modifications can be made therein, these variations and modifications are also considered as protection scope of the present invention.

Claims (10)

1. a kind of gene sequencing chip, including substrate and the multiple microcellular structures being arranged in substrate, which is characterized in that adjacent Microcellular structure between be provided with blockage structures, blockage structures are used to stopping the light emission of the bottom hole from microcellular structure to facing Detection unit corresponding to close blockage structures.
2. gene sequencing chip according to claim 1, which is characterized in that blockage structures include extinction structure or reflective Structure.
3. gene sequencing chip according to claim 1, which is characterized in that orthographic projection packet of the blockage structures in substrate Enclose orthographic projection of the microcellular structure in substrate.
4. gene sequencing chip according to claim 1, which is characterized in that orthographic projection of the blockage structures in substrate Close to the boundary of microcellular structure and the overlapping margins of orthographic projection of the microcellular structure in substrate.
5. gene sequencing chip according to claim 1, which is characterized in that orthographic projection of the blockage structures in substrate Close to the boundary of microcellular structure and the boundary of orthographic projection of the microcellular structure in substrate at a distance of set distance.
6. gene sequencing chip according to claim 1, which is characterized in that further include cover blockage structures surface repair Layer is adornd, finishing coat is for receiving surface modification in gene sequencing.
7. gene sequencing chip according to claim 6, which is characterized in that orthographic projection of the finishing coat in substrate Close to the boundary of microcellular structure and the overlapping margins of orthographic projection of the microcellular structure in substrate.
8. a kind of gene sequencing equipment, which is characterized in that including gene sequencing described in -7 any one according to claim 1 Chip.
9. a kind of manufacturing method of gene sequencing chip characterized by comprising
The step of multiple microcellular structures are formed on the substrate;
The step of blockage structures are formed between adjacent microcellular structure, blockage structures are for stopping from microcellular structure The light emission of bottom hole is to detection unit corresponding to the blockage structures closed on.
10. manufacturing method according to claim 9, which is characterized in that further include the surface to form covering blockage structures The step of decorative layer, wherein finishing coat is for receiving surface modification in gene sequencing.
CN201910367836.8A 2019-05-05 2019-05-05 Gene sequencing chip, equipment, manufacturing method Pending CN110066723A (en)

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PCT/CN2020/087946 WO2020224511A1 (en) 2019-05-05 2020-04-30 Gene sequencing chip and method for manufacture thereof, and gene sequencing device

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Application publication date: 20190730