CN109856259A - A kind of serum cancer of pancreas excretion body differential protein and its again verification process - Google Patents

A kind of serum cancer of pancreas excretion body differential protein and its again verification process Download PDF

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CN109856259A
CN109856259A CN201811643412.1A CN201811643412A CN109856259A CN 109856259 A CN109856259 A CN 109856259A CN 201811643412 A CN201811643412 A CN 201811643412A CN 109856259 A CN109856259 A CN 109856259A
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excretion body
protein
albumen
serum
pancreas
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肖明兵
陈晓阳
季洁
瞿利帅
刘金霞
焦钰洁
江枫
钱坤艳
纪易斐
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Affiliated Hospital of Nantong University
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Abstract

The present invention provides a kind of serum cancer of pancreas excretion body differential protein, including albumin A DAM10, PROTEIN C FHR1, albumin A POA4, albumen Testicular tissue protein Li 70, albumen HEL-S-78p, albumen PGLYRP2, protein I GFALS, protein B CHE, albumin A NPEP, albumen LBP, PROTEIN C 9, albumen PZP, albumin A NXA11.The present invention also provides a kind of serum cancer of pancreas excretion body differential protein verification process again, comprising the following steps: in S1, separation blood serum sample without excretion body serum and excretion body;S2, using the isolated excretion body of step S1, prepare excretion body PBS solution;S3, the ultra microstructure that excretion body is checked by transmission electron microscope;S4, the expression that some excretion body surfaces face marker protein is detected by western blot analysis.Serum cancer of pancreas excretion body differential protein of the invention, can be used in preparing the Related product of diagnosis of pancreatic cancer, serum cancer of pancreas excretion body differential protein again verification process have the advantages that absolute specificity, high throughput, it is noiseless, can identify macromolecular isomers and small molecule.

Description

A kind of serum cancer of pancreas excretion body differential protein and its again verification process
Technical field
The invention belongs to the verification method technical fields of serum cancer of pancreas excretion body differential protein, and in particular to a kind of serum Cancer of pancreas excretion body differential protein and its again verification process.
Background technique
Currently, the verification method of serum cancer of pancreas excretion body differential protein is with outside the corresponding detection of specific antibody of albumen Secrete the method for body.Cell and the method for organizing common Western Blot: it is separated by PAGE (polyacrylamide gel electrophoresis) Protein example, be transferred on solid phase carrier (such as cellulose nitrate film), with the protein or polypeptide on solid phase carrier As antigen, immune response is played with corresponding antibody, then react with the secondary antibody of enzyme or isotope labelling, it is aobvious by substrate Color or autoradiograph are to detect the protein ingredient of the specific destination gene expression of electrophoretic separation.The liquid such as serum are common The method of ELISA: 1. making antibody be integrated to certain surface of solid phase carriers, and keeps its immunocompetence.2. making antibody and certain enzyme Enzyme labelled antibody is connected into, this enzyme labelled antibody had not only retained its immunocompetence, but also retained the activity of enzyme.In measurement, being marked by inspection This and enzyme labelled antibody react by the antibody of different step and surface of solid phase carriers.Make shape on solid phase carrier with the method for washing At antigen antibody complex and other substances separate, finally combine tested substance in enzyme amount on solid phase carrier and sample Measure into certain ratio.After the substrate of enzyme reaction is added, substrate becomes color products by enzymatic, in the amount and sample of product by The amount for examining substance is directly related, therefore can whether there is or not qualitative or quantitative analysis according to the depth of color reaction.However, various albumen need Corresponding various antibody, and antibody acquisition difficulty is big, quality is also irregular, is one of the technology barrier that research faces.
Summary of the invention
The technical problem to be solved in the present invention is to provide a kind of serum cancer of pancreas excretion body differential protein, its application and its again Verification process, to solve the problems, such as proposed in background technique;Simultaneously to pancreatopathy cancer serum excretion body differential protein (ADAM10, CFHR1、APOA4、Testicular tissue protein Li 70、HEL-S-78p、PGLYRP2、IGFALS、BCHE、 ANPEP, LBP, C9, PZP, ANXA11) it is verified.
In order to solve the above technical problems, the embodiment of the present invention provides a kind of serum cancer of pancreas excretion body differential protein, It is characterized in that, including albumin A DAM10, PROTEIN C FHR1, albumin A POA4, albumen Testiculartissue protein Li 70, albumen HEL-S-78p, albumen PGLYRP2, protein I GFALS, protein B CHE, albumin A NPEP, albumen LBP, PROTEIN C 9, egg White PZP, albumin A NXA11.
The present invention also provides a kind of verification process again of serum cancer of pancreas excretion body differential protein, which is characterized in that including Following steps: S1, separation blood serum sample in without excretion body serum and excretion body;S2, using the isolated excretion of step S1 Body prepares excretion body PBS solution;S3, the ultra microstructure that excretion body is checked by transmission electron microscope;S4, pass through egg White matter engram analysis detects the expression of some excretion body surfaces face marker protein.
Further, the step S1, separation blood serum sample in without excretion body serum and excretion body, specifically include following Process: blood serum sample is thawed and is centrifuged 30 minutes at 4 DEG C with small supercentrifuge 10000g, to remove non-in sample Excretion body microvesicle;To go unless supernatant after excretion body microvesicle with small supercentrifuge 110000g centrifugation 70 minutes after, by nothing Excretion body serum separate it is to be checked to another Restored in test tube, excretion body precipitating be resuspended in 4ml PBS.
Further, the step S2, prepare excretion body PBS solution, specifically include following procedure: will be obtained by step S1 Excretion weight suspension at 4 DEG C with supercentrifuge 110000g ultracentrifugation 70 minutes small, keep excretion body in suspension heavy It forms sediment;Final excretion body precipitating is resuspended in the PBS of 200 μ l, excretion body PBS solution is obtained.
Further, the step S4, western blot analysis detect the table of some excretion body surfaces face marker protein Up to process, comprising the following steps: (1) protein quantification;(2) pancreatin digests;(3) liquid chromatography-mass spectrometry;(4) data Processing;
Wherein, the process of step (1) protein quantification carries out determination of protein concentration using BCA kit.
Wherein, step (2) the pancreatin enzymatic hydrolysis, specifically includes following procedure: dithiothreitol (DTT) is added in protein solution to be made Its final concentration of 5mM, 56 DEG C of reduction 30min;Iodo-acetamide is added later makes its final concentration of 11mM, and room temperature is protected from light incubation 15min;Finally the urea concentration of sample is diluted to lower than 2M;With pancreatin: pancreas is added in the mass ratio that the ratio between albumen is 1:50 Enzyme, 37 DEG C of enzymatic hydrolysis are overnight;Again with pancreatin: pancreatin is added in the mass ratio of the ratio between albumen 1:100, continues to digest 4h;
Wherein, step (3) liquid chromatography-mass spectrometry, specifically includes following procedure: a, peptide fragment liquid phase color It is separated after spectrum mobile phase A phased soln using 1000 ultra high efficiency liquid phase systems of EASY-nLC;Mobile phase A is containing 0.1% formic acid With the aqueous solution of 2% acetonitrile;Mobile phase B is the aqueous solution containing 0.1% formic acid and 90% acetonitrile;The setting of liquid phase gradient: 0~ 40min, 7%-25%B;40~52min, 25%-35%B;52~56min, 35%-80%B;56~60min, 80%B, stream Speed maintains 450nL/min;B, then peptide fragment is ionized in injection NSI ion source via after the separation of ultra high efficiency liquid phase systems It is analyzed into Q ExactiveTM Plus mass spectrum;Ion source voltage is set as 2.0kV, peptide fragment parent ion and its secondary fragment All it is detected and analyzed using high-resolution Orbitrap;First mass spectrometric scanning range is set as 350~950m/z, scanning point Resolution is set as 70,000;Second order ms Orbitrap scanning resolution is set as 17500;C, data acquisition scheme uses data The fragmentation energies of independent form scanner program, HCD collision cell are set as 27;First mass spectrometric automatic growth control is set as 3E6, most The big ion implanting time is set as 50ms;Second order ms automatic growth control is set as 1E5, and maximum ion injection length is set as 150ms, isolation window are set as 1.6m/z;
Wherein, step (4) data processing, specifically include following procedure: peptide fragment parameter: protease is set as Trypsin, maximum leakage enzyme site number are set as 0, and peptide segment length is set as 7~25 amino acid residues, and cysteine alkane is arranged Base turns to fixed modification;Transition parameter: parent ion charge is set as 2,3, and daughter ion charge is set as 1, ionic type It is set as b, y;To last one since third, the matched quality error tolerance of ion is set as fragment ion selection 0.02Da。
The advantageous effects of the above technical solutions of the present invention are as follows: serum cancer of pancreas excretion body differential protein of the invention, Including albumin A DAM10, PROTEIN C FHR1, albumin A POA4, albumen Testicular tissueprotein Li 70, albumen HEL-S-78p, albumen PGLYRP2, protein I GFALS, protein B CHE, albumin A NPEP, albumen LBP, PROTEIN C 9, albumen PZP, egg White ANXA11;By using the verification process again of PRM to test relative to original Western Blot/ELISA in verification process again Card method, this verification method have absolute specificity, high throughput, it is noiseless, can identify macromolecular isomers and small molecule The advantages of;And the verification result of verification process is shown again: ADAM10, ANPEP, ANXA11 are higher than in pancreatopathy cancer serum excretion body Pancreatitis and normal serum excretion body, and three is peculiar in excretion body;Testicular tissue protein Li 70, HEL-S-78p is significantly higher than cancer of pancreas and pancreatitis serum excretion body in normal serum excretion body;Meanwhile utilization is authenticated again The effects of journey can play diagnosis to cancer of pancreas and judge by stages.
Detailed description of the invention
Fig. 1 is the differential protein abundance statistical chart in the serum excretion body in the present invention;
Fig. 2 is in the present invention without the differential protein abundance statistical chart in excretion body serum.
Specific embodiment
To keep the technical problem to be solved in the present invention, technical solution and advantage clearer, below in conjunction with attached drawing and tool Body embodiment is described in detail.
In the description of the present invention, it should be noted that term " center ", "upper" "lower", "left", "right", "vertical", The orientation or positional relationship of the instructions such as "horizontal", "inner", "outside", "front", "rear" is that orientation based on the figure or position are closed System, is merely for convenience of description of the present invention and simplification of the description, rather than the device or element of indication or suggestion meaning must have Specific orientation is constructed and operated in a specific orientation, therefore is not considered as limiting the invention.In addition, term " the One ", " second ", " third " are used for descriptive purposes only and cannot be understood as indicating or suggesting relative importance.
In the description of the present invention, it should be noted that unless otherwise clearly defined and limited, term " installation ", " phase Even ", " connection " should be used as broadly understood, for example, it may be being fixedly connected, may be a detachable connection, or be integrally connected; It can be mechanical connection, be also possible to be electrically connected;It can be directly connected, can also indirectly connected through an intermediary, it can be with It is the connection inside two elements.For the ordinary skill in the art, it can understand that above-mentioned term exists with concrete condition Concrete meaning in the present invention.
A kind of serum cancer of pancreas excretion body differential protein, including albumin A DAM10, PROTEIN C FHR1, albumin A POA4, albumen Testicular tissue protein Li 70, albumen HEL-S-78p, albumen PGLYRP2, protein I GFALS, albumen BCHE, albumin A NPEP, albumen LBP, PROTEIN C 9, albumen PZP, albumin A NXA11.
Using the initial data of MaxQuant software processing LC-MS/MS, then carried out for mankind Uniprot database Search.Identify 453 respectively from the serum excretion body that Pancreas cancer patients, Pancreatitis Patients and healthy individuals obtain respectively, 460 and 384 kind of protein.
Protein is compared as follows in the serum excretion body that Pancreas cancer patients, Pancreatitis Patients and healthy individuals obtain:
It come the expression of normalized protein and is analyzed from Pancreas cancer patients, Pancreatitis Patients and health with LFQ algorithm Significant difference between three groups of serum excretion bodies of body.To at least there are two the data of non-null value to carry out in three repeated experiments data Statistical analysis, and when meeting following screening criteria, it is believed that the significant difference of the data obtained: multiple > 2.0 of differential expression and Value < 0.05 P.It is compared with the serum excretion body from healthy individuals, the serum excretion body from Pancreas cancer patients has 29 species diversity The protein of expression: the up-regulation of 18 kinds of protein (be respectively: FGA, PTTG1IP, ANPEP, LBP, LTF, FGG, HEL-S-78P, C9, VWF, SLC4A1, FTL, ANXA11, SDCBP, C4B, CD9, F9, IGHA2, VWF), 11 kinds of protein lower (be respectively: TTR、TUBB1、PZP、PGLYRP2、DKFZp686M0562、IGFALS、BCHE、IGKV3-20、FCN2、DKFZp686O1553、 B4DU16).It is compared with the serum excretion body from pancreatitis, the serum excretion body from Pancreas cancer patients has 28 species diversity tables The protein reached: the up-regulation of 14 kinds of protein (be respectively: HEL46, FGG, HEL-S-78P, FGA, CFP, APAO4, CD9, A2JA19, ANXA11, ITGB3, CAMP, TF, CFHR1, ADAM10), 14 kinds of protein lower (be respectively: A2NH55, DKFZp779K0533、F9、AHSG、SPP2、DEFA3、CRP、PZP、F7、SERPINA10、S100A9、F10、PROC、IGKV3- 20);Differential protein abundance statistics in serum excretion body is as shown in Figure 1;Differential protein abundance statistics in no excretion body serum As shown in Figure 2.
A kind of serum cancer of pancreas excretion body differential protein of the invention, can be used for preparing the product of diagnosis of pancreatic cancer.Wherein, The product is chip, detection reagent or detection kit.
Serum cancer of pancreas excretion body differential protein of the invention, including albumin A DAM10, PROTEIN C FHR1, albumin A POA4, Albumen Testicular tissue protein Li 70, albumen HEL-S-78p, albumen PGLYRP2, protein I GFALS, albumen BCHE, albumin A NPEP, albumen LBP, PROTEIN C 9, albumen PZP, albumin A NXA11;And the verification result of verification process is shown again: ADAM10, ANPEP, ANXA11 are higher than pancreatitis and normal serum excretion body in pancreatopathy cancer serum excretion body, and three is outside It secretes peculiar in body;Testicular tissue protein Li 70, HEL-S-78p are significantly high in normal serum excretion body In cancer of pancreas and pancreatitis serum excretion body;Meanwhile diagnosis can be played to cancer of pancreas with verification process again and is judged by stages The effects of.
A kind of verification process again of serum cancer of pancreas excretion body differential protein, comprising the following steps: S1, separation blood serum sample In without excretion body serum and excretion body;Blood serum sample is thawed and is centrifuged 30 points at 4 DEG C with small supercentrifuge 10000g Clock, to remove the non-excretion body microvesicle in sample;It will go unless the supernatant after excretion body microvesicle is with small supercentrifuge 110000g be centrifuged 70 minutes after, will be separated without excretion body serum it is to be checked to another Restored in test tube, excretion body precipitating be resuspended in 4ml In PBS.S2, using the isolated excretion body of step S1, prepare excretion body PBS solution;By the resulting excretion body of step S1 Re-suspension liquid with supercentrifuge 110000g ultracentrifugation 70 minutes small, precipitates excretion body in suspension at 4 DEG C;It will be final Excretion body precipitating be resuspended in the PBS of 200 μ l, obtain excretion body PBS solution.S3, it is checked by transmission electron microscope The ultra microstructure of excretion body;It can be seen that diameter is that the transparent, round or ellipse of 30-100nm has film envelope in TEM experiment The particle that closed.S4, detected by western blot analysis some excretion body surfaces face marker protein (CD9, CD63 and TSG101 expression).These labels are significantly expressed in excretion body.
The step S4, western blot analysis detect the expression process of some excretion body surfaces face marker protein, packet Include following steps:
(1) protein quantification;Determination of protein concentration is carried out using BCA kit.
(2) dithiothreitol (DTT) is added in protein solution makes its final concentration of 5mM, 56 DEG C of reduction 30min;Iodo is added later Acetamide makes its final concentration of 11mM, and room temperature, which is protected from light, is incubated for 15min;Finally the urea concentration of sample is diluted to lower than 2M;With Pancreatin: pancreatin is added in the mass ratio that the ratio between albumen is 1:50, and 37 DEG C of enzymatic hydrolysis are overnight;Again with pancreatin: the matter of the ratio between albumen 1:100 Pancreatin is added in amount ratio, continues to digest 4h.
(3) liquid chromatography-mass spectrometry;Liquid chromatography-mass spectrometry specifically includes following procedure: a, peptide It is separated after section liquid chromatogram mobile phase A phased soln using 1000 ultra high efficiency liquid phase systems of EASY-nLC;Mobile phase A is Aqueous solution containing 0.1% formic acid and 2% acetonitrile;Mobile phase B is the aqueous solution containing 0.1% formic acid and 90% acetonitrile;Liquid phase gradient Setting: 0~40min, 7%-25%B;40~52min, 25%-35%B;52~56min, 35%-80%B;56~60min, 80%B, flow velocity maintain 450nL/min;B, peptide fragment is carried out in injection NSI ion source via after the separation of ultra high efficiency liquid phase systems Then ionization is analyzed into Q ExactiveTM Plus mass spectrum;Ion source voltage is set as 2.0kV, peptide fragment parent ion and its Secondary fragment is all detected and analyzed using high-resolution Orbitrap;First mass spectrometric scanning range is set as 350~950m/ Z, scanning resolution are set as 70,000;Second order ms Orbitrap scanning resolution is set as 17500;C, data acquisition scheme Using data independent form scanner program, the fragmentation energies of HCD collision cell are set as 27;The setting of first mass spectrometric automatic growth control For 3E6, maximum ion injection length is set as 50ms;Second order ms automatic growth control is set as 1E5, when maximum ion is injected Between be set as 150ms, isolation window is set as 1.6m/z.
(4) data processing;Specifically include following procedure: peptide fragment parameter: protease is set as Trypsin, and position is cut in maximum leakage Points are set as 0, and peptide segment length is set as 7~25 amino acid residues, and setting cysteine is alkylated to fixed modification; Transition parameter: parent ion charge is set as 2,3, and daughter ion charge is set as 1, and ionic type is set as b, y;Fragment from To last one since third, the matched quality error tolerance of ion is set as 0.02Da for son selection.
In the present embodiment, the optional supplier of used reagent is as follows:
In the present invention, the difficulty that the very good solution of verification process again of PRM mass-spectrometric technique antibody obtains is big, quality ginseng The uneven problem of difference.Below table compares what original (Western Blot/ELISA) verification method was used with the present invention PRM mass-spectrometric technique verification process again.
The present invention has absolute specificity, height using the verification process again that PRM carries out serum cancer of pancreas excretion body differential protein Flux, it is noiseless, can identify macromolecular isomers and small molecule, solve antibody acquisition difficulty is big, quality is irregular The problem of, macromolecular isomers and small molecule can be accurately identified.
The above is a preferred embodiment of the present invention, it is noted that for those skilled in the art For, without departing from the principles of the present invention, it can also make several improvements and retouch, these improvements and modifications It should be regarded as protection scope of the present invention.

Claims (5)

1. a kind of serum cancer of pancreas excretion body differential protein, which is characterized in that including albumin A DAM10, PROTEIN C FHR1, albumen APOA4, albumen Testicular tissue protein Li 70, albumen HEL-S-78p, albumen PGLYRP2, albumen IGFALS, protein B CHE, albumin A NPEP, albumen LBP, PROTEIN C 9, albumen PZP, albumin A NXA11.
2. a kind of verification process again of serum cancer of pancreas excretion body differential protein according to claim 1, which is characterized in that The following steps are included: S1, separation blood serum sample in without excretion body serum and excretion body;It is S2, isolated using step S1 Excretion body prepares excretion body PBS solution;S3, the ultra microstructure that excretion body is checked by transmission electron microscope;S4, lead to Western blot analysis is crossed to detect the expression of some excretion body surfaces face marker protein.
3. a kind of verification process again of serum cancer of pancreas excretion body differential protein according to claim 2, which is characterized in that The step S1, separation blood serum sample in without excretion body serum and excretion body, specifically include following procedure: by blood serum sample solution Freeze and at 4 DEG C with small supercentrifuge 10000g centrifugation 30 minutes, to remove the non-excretion body microvesicle in sample;It will removal After supernatant after non-excretion body microvesicle was with small supercentrifuge 110000g centrifugation 70 minutes, will be separated without excretion body serum to Another Restored in test tube is to be checked, and excretion body precipitating is resuspended in 4ml PBS.
4. a kind of verification process again of serum cancer of pancreas excretion body differential protein according to claim 2, which is characterized in that The step S2, excretion body PBS solution is prepared, specifically includes following procedure: by the resulting excretion weight suspension of step S1 4 With supercentrifuge 110000g ultracentrifugation 70 minutes small at DEG C, precipitate excretion body in suspension;Final excretion body is sunk Shallow lake is resuspended in the PBS of 200 μ l, obtains excretion body PBS solution.
5. a kind of verification process again of serum cancer of pancreas excretion body differential protein according to claim 2, which is characterized in that The step S4, western blot analysis detect the expression process of some excretion body surfaces face marker protein, including following step It is rapid: (1) protein quantification;(2) pancreatin digests;(3) liquid chromatography-mass spectrometry;(4) data processing;
Wherein, the process of step (1) protein quantification carries out determination of protein concentration using BCA kit;
Wherein, step (2) the pancreatin enzymatic hydrolysis, specifically includes following procedure: dithiothreitol (DTT) is added in protein solution makes its end Concentration is 5mM, 56 DEG C of reduction 30min;Iodo-acetamide is added later makes its final concentration of 11mM, and room temperature, which is protected from light, is incubated for 15min; Finally the urea concentration of sample is diluted to lower than 2M;With pancreatin: the mass ratio addition pancreatin that the ratio between albumen is 1:50,37 DEG C Enzymatic hydrolysis is overnight;Again with pancreatin: pancreatin is added in the mass ratio of the ratio between albumen 1:100, continues to digest 4h;
Wherein, step (3) liquid chromatography-mass spectrometry, specifically includes following procedure: a, peptide fragment liquid chromatogram stream It is separated after dynamic phase A phased soln using 1000 ultra high efficiency liquid phase systems of EASY-nLC;Mobile phase A be containing 0.1% formic acid and The aqueous solution of 2% acetonitrile;Mobile phase B is the aqueous solution containing 0.1% formic acid and 90% acetonitrile;The setting of liquid phase gradient: 0~40min, 7%-25%B;40~52min, 25%-35%B;52~56min, 35%-80%B;56~60min, 80%B, flow velocity maintain In 450nL/min;B, then peptide fragment ionize in injection NSI ion source into Q via after the separation of ultra high efficiency liquid phase systems ExactiveTM Plus mass spectrum is analyzed;Ion source voltage is set as 2.0kV, and peptide fragment parent ion and its secondary fragment all make It is detected and analyzed with high-resolution Orbitrap;First mass spectrometric scanning range is set as 350~950m/z, scanning resolution It is set as 70,000;Second order ms Orbitrap scanning resolution is set as 17500;C, data acquisition scheme using data it is non-according to Rely type scanner program, the fragmentation energies of HCD collision cell are set as 27;First mass spectrometric automatic growth control is set as 3E6, it is maximum from Sub- injection length is set as 50ms;Second order ms automatic growth control is set as 1E5, and maximum ion injection length is set as 150ms, isolation window are set as 1.6m/z;
Wherein, step (4) data processing, specifically include following procedure: peptide fragment parameter: protease is set as Trypsin, most Big leakage enzyme site number is set as 0, and peptide segment length is set as 7~25 amino acid residues, and setting cysteine is alkylated to fix Modification;Transition parameter: parent ion charge is set as 2,3, and daughter ion charge is set as 1, and ionic type is set as b, y; To last one since third, the matched quality error tolerance of ion is set as 0.02Da for fragment ion selection.
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CN112433054A (en) * 2020-11-20 2021-03-02 四川大学华西医院 Application of C9 protein detection reagent in preparation of lung cancer screening kit
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CN113430267A (en) * 2021-06-29 2021-09-24 复旦大学附属中山医院 Application of chemotherapy-related gene expression characteristics in prediction of pancreatic cancer prognosis
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