CN108977401B - Method for culturing microalgae by adopting lignocellulose - Google Patents

Method for culturing microalgae by adopting lignocellulose Download PDF

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CN108977401B
CN108977401B CN201810939294.2A CN201810939294A CN108977401B CN 108977401 B CN108977401 B CN 108977401B CN 201810939294 A CN201810939294 A CN 201810939294A CN 108977401 B CN108977401 B CN 108977401B
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崔球
刘亚君
祁宽
宋晓金
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Qingdao Institute of Bioenergy and Bioprocess Technology of CAS
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Abstract

Aiming at the problem of high cost of carbon sources existing in the heterotrophic microalgae fermentation in the prior art, the invention provides a process for taking lignocellulose agricultural and forestry waste as a raw material, wherein the process comprises the steps of pretreatment of lignocellulose raw material, saccharification, heterotrophic microalgae fermentation, post-treatment and the like. The process adopts a strategy of combining lignocellulose biomass saccharification and microalgae heterotrophic fermentation, not only obviously reduces the production cost of the microalgae heterotrophic fermentation, but also solves the problem of comprehensive utilization of agricultural and forestry wastes. Meanwhile, a cellulase preparation for catalyzing saccharification of lignocellulose is adopted, so that the enzyme cost in the saccharification stage is obviously reduced. In addition, the medium and the fermentation medium in the saccharification stage of the lignocellulose in the process can be recycled, so that water and chemicals can be obviously saved, and the process has the obvious effects of reducing wastewater discharge and reducing cost; has important significance for industrialization.

Description

Method for culturing microalgae by adopting lignocellulose
Technical Field
The invention relates to the field of microbial fermentation engineering, in particular to a method for fermenting and culturing microalgae by utilizing a lignocellulose raw material.
Background
As a novel aquatic biomass resource, the microalgae have the characteristics of short growth cycle, high biomass yield and high oil content, the biomass production capacity can reach 30 times of that of land plants, and the microalgae have the great advantage of not competing for land and people with grains. Microalgae have great attractive development potential in the field of renewable energy sources, for example, microalgae have strong oil production capacity and the oil content can reach 40-80% of the dry weight of cells. Therefore, the microalgae is very likely to provide an effective solution for the biomass energy shortage in China. The development of energy microalgae resources and the development of energy microalgae biorefinery industry not only meet the energy strategic requirements of sustainable development in China, but also are consistent with the targets of establishing resource-saving and environment-friendly societies in China, and are beneficial to promoting harmonious development of human and nature and sustainable development of economic society.
At present, there are three culture modes of microalgae: autotrophy, heterotrophy, and mixotrophy (a combination of autotrophy and heterotrophy). Compared with the utilization of CO2The heterotrophic fermentation which uses glucose and organic matters as nutrient sources has the advantages of easy scale enlargement of culture, high growth and propagation speed of microalgae, high biomass concentration, convenient control of the production process and the like. The existing heterotrophic microalgae fermentation method mainly uses glucose from corn starch as a main carbon source, so that the supply of the glucose and the raw material cost are one of the key problems limiting the development of the microalgae industry at present. In order to overcome the problem, people continuously try to find cheap raw materials as substrates for culturing microalgae, and the development of a novel low-cost carbon source and a matched biological preparation technology has necessity and wide application prospect.
Lignocellulose is a renewable biomass which is rich in supply and environment-friendly, and comprises agricultural and forestry wastes such as straws, waste paper pulp, rice hulls, vinasse and the like. Lignocellulose is mainly composed of cellulose, hemicellulose and lignin. Wherein the cellulose is composed of glucose. Therefore, the lignocellulose biomass is a potential cheap glucose raw material, and the method for producing the glucose by taking the lignocellulose raw material as the substrate is developed, so that the cost of the microalgae heterotrophic fermentation raw material can be obviously reduced, and the problem of comprehensive utilization of agricultural and forestry wastes is solved.
At present, in the prior art of culturing microalgae by using lignocellulose as a raw material, substrates such as straws and the like are generally subjected to enzymolysis by using cellulase from fungi. The invention patents CN201610976321 and CN201710248657 both disclose methods for culturing microalgae by using straw fiber hydrolysate, which utilize commercialized cellulase and hemicellulase derived from fungi to hydrolyze pretreated agricultural straws to obtain fiber hydrolysate, and then use the fiber hydrolysate as a sugar source to perform fermentation culture of chlorella. Wherein the addition amount of the cellulase is 5-500FPU, and the cost is high.
The strategy of adopting the enzyme preparation from the fungi has the defects of efficiency and cost, which is mainly because the cellulase preparation needs to be prepared by microbial fermentation in a separate reactor, the preparation process is different from the cellulose hydrolysis condition, the production steps are complicated, the cost such as manpower and material resource requirements and equipment investment is obviously increased, and the saccharification process of lignocellulose has no market competitiveness, so that the saccharification technology based on the cellulase preparation from the fungi and the preparation technology of the polyunsaturated fatty acid are difficult to realize large-scale industrial application.
The invention patent CN201510858635 discloses a method for culturing chlorella by utilizing straw hemicellulose, which utilizes alkali-treated straws as a substrate and utilizes vibrio fibuligeri and chlorella to construct a co-culture system, so that straw hydrolysis and chlorella fermentation are synchronously carried out, but the problems of low straw hydrolysis efficiency, long culture period and the like exist. Therefore, there is a need to find more efficient methods and techniques for lignocellulose enzymatic hydrolysis and to combine this with microalgae fermentation.
It is known that cellulosome is a multienzyme complex with complex structure and components produced by anaerobic bacteria such as clostridium thermocellum, and is one of the most efficient cellulose degradation systems known in nature. Despite the great potential of the cellulosome and its production strains for lignocellulose saccharification applications, its industrial application is still limited by a number of factors. Saccharification efficiency is significantly reduced when the lignocellulosic complex substrate has a high content of non-cellulosic components (e.g., hemicellulose, pectin, starch, protein, lignin). The predecessors mainly improve the viability of the cellulosomes and their adaptability to the substrate by adding additional non-cellulosome proteins to the hydrolysis system. However, since the activity and stability of the exogenously added protein are reduced as the saccharification process proceeds, the consumption of the enzyme requires an increase in the amount of enzyme added or the number of times of addition. In addition, these non-cellulosome proteins added to the saccharification system as free enzymes cannot interact with cellulosome, which significantly reduces the synergistic effect with other enzymes in the system, and inevitably results in additional addition of more than required amount of enzyme, leading to high cost of enzyme preparation. Moreover, the saccharification strategy relying on exogenously added free enzyme has complex process and high requirement on equipment, and the conversion efficiency can not meet the requirement of industrial production.
Disclosure of Invention
Aiming at the problem of high cost of carbon sources existing in the heterotrophic microalgae fermentation in the prior art, the invention provides the process taking lignocellulose agricultural and forestry waste as the raw material, and the process adopts the cellulase preparation for catalyzing the saccharification of lignocellulose, so that the cost of the carbon sources for the heterotrophic microalgae fermentation is reduced.
The technical scheme of the invention is as follows: the method for culturing the microalgae by adopting the lignocellulose comprises the following steps:
(1) pretreatment: pretreating a lignocellulose raw material to obtain a lignocellulose substrate with the lignin content of not higher than 20% and the hemicellulose content of not higher than 25%;
(2) saccharification: transferring the lignocellulose substrate obtained in the step (1) into a saccharification culture medium of an anaerobic fermentation tank according to the solid-liquid weight-volume ratio of 1:2-1:25, adding a cellulase preparation into the lignocellulose substrate, and performing hydrolysis reaction at the temperature of 34-65 ℃ to obtain a sugar solution containing glucose; the saccharification culture medium comprises: 2.9g/L of dipotassium phosphate, 1.5g/L of monopotassium phosphate, 0.8g/L of urea, 0.1g/L of calcium chloride, 1.8g/L of magnesium chloride, 0.0005g/L of ferrous sulfate, 2g/L of sodium sulfide, 4g/L of corn steep liquor and 2g/L, pH 6.5.5-7.5 of trisodium citrate. During saccharification, the pH can be controlled to be 5.8-6.2 by feeding sodium hydroxide.
(3) Heterotrophic microalgae fermentation: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 25-180g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated microalgae seed liquid, fermenting at 16-34 deg.C for 5-10 days until the glucose concentration is not higher than 5 g/L; or continuously feeding the sugar solution obtained in the step (2) in the fermentation process to maintain the sugar concentration at 5-10g/L, and fermenting at 16-34 deg.C under nitrogen supply for 5-10 days to obtain fermentation liquid.
Wherein the fermentation medium comprises the following components in percentage by mass: 0.3 percent of yeast powder, 0.6 percent of corn steep liquor, 0.3 percent of monopotassium phosphate, 0.03 percent of magnesium sulfate heptahydrate, 0.3 percent of sodium nitrate and the balance of water, and the pH value is 6.0.
The microalgae is unicellular photosynthetic microorganism with heterotrophic growth capability, and comprises nannochloropsis, scenedesmus, chlorella, Crypthecodinium cohnii, Spirulina and Haematococcus pluvialis. Wherein nannochloropsis, chlorella, spirulina and haematococcus pluvialis can be subjected to fermentation culture in a photoperiod mode.
(4) And (3) post-treatment: and (4) centrifuging the fermentation liquor obtained in the step (3), and separating algae cells from the fermented culture medium.
The method further comprises a step (5), specifically: and (3) diluting the culture medium obtained after the solid-liquid separation in the step (4) without dilution or by 1-3 times, and preparing the saccharification culture medium in the step (2).
Wherein, the cellulase preparation in the step (2) is obtained by combining non-cellulosome protein in a cellulosome complex through the interaction of the non-cellulosome protein and components in the cellulosome; the non-cellulosome protein is xylanase, cellulose endonuclease, cellulose exonuclease, swelling factor, protease, amylase or pectinase; the cellulosome is a multienzyme complex with lignocellulose degrading activity produced by anaerobic bacteria and secreted extracellularly. The components in the fibrosome are foot rest protein, enzyme with a catalytic function and an assembly module.
The non-fibrosome protein interacts with the protein components in the fibrosome in a manner that is indirect or direct; the indirect connection is as follows: the non-fibrosome protein is linked to the protein components in the fibrosome by covalent interactions, the direct linkage being: non-fibrosomal proteins are linked to components in the fibrosomes by tandem expression.
Preferably, the non-fibrosomal protein has an amino acid sequence shown in SEQ ID NO 1-3,15-18 of the sequence table; and an amino acid sequence which has more than 95% of consistency with the amino acid sequences shown as SEQ ID NO. 1-3,15-18 and has the same function with the amino acid sequences shown as SEQ ID NO. 1-3, 15-18. Wherein: 15 SEQ ID NO: Genbank SEQ ID NO: CRZ 35393.1; 16 encoded by the 1968724 to 1973904 nucleic acid sequence of genomic CP 001393.1; SEQ ID NO. 17 Genbank sequence No. KC 763474.1; 18 encoded by the 2531445 to 2532785 nucleic acid sequence of genomic CP 001393.1.
Preferably, the anaerobic bacteria are Clostridium thermocellum (Clostridium thermocellum), Clostridium flavum (Clostridium clavatum), Clostridium cellulophilum (Clostridium cellulovorans), Clostridium cellulolyticum (Clostridium cellulolyticum), vibrio cellulolyticus (acetovibrio cellulolyticus), pseudomonas cellulolyticus (pseudomonas cellulolyticus), Ruminococcus albus (Ruminococcus albus), Ruminococcus xanthus (Ruminococcus flavefaciens). Wherein the Clostridium thermocellum is Clostridium thermocellum expressing an secreted beta 1, 4-glucosidase.
Wherein the non-fibrosomal protein is linked to a component in a fibrosome by covalent interactions, in particular: the non-fibrosome protein and the fibrosome component are respectively connected with polypeptide fragments with covalent interaction, the covalent crosslinking of the fibrosome component and the non-fibrosome protein is realized by utilizing the specific covalent interaction between the polypeptide fragments, and the non-fibrosome protein is combined in the fibrosome complex by utilizing an assembly module carried by the fibrosome component. The polypeptide fragment which is covalently interacted with the non-fibrosomal protein and the fibrosomal component is a base sequence shown in SEQ ID NO. 4 or an amino acid sequence shown in SEQ ID NO. 5. The concrete implementation steps comprise:
1) connecting the non-fibrosomal protein with the coding gene of one fragment (polypeptide fragment I or II, namely SEQ ID NO:4 or 5) of the pair of polypeptide fragments with covalent interaction by a gene cloning method;
2) according to 1), the genes encoding the other fragment of the pair of covalently interacting polypeptide fragments (polypeptide fragment II or I, i.e. SEQ ID NO:5 or 4) of the cellulosome component protein are linked by means of gene cloning.
3) According to 1), connecting the recombinant gene sequences of non-fibrosomal proteins and polypeptide fragments to a fibrosomal-producing bacterial expression plasmid;
4) according to 2), the recombinant gene sequences of the cellulosome component proteins and polypeptide fragments are ligated to a cellulosome-producing bacterial homologous recombinant plasmid and homology arms are designed according to the genomic sequence.
5) Transforming the plasmid obtained in the step 4) into a cellulosome-producing bacterial cell, and realizing the replacement of the original cellulosome component protein sequence on the genome by the recombinant gene sequence through homologous recombination screening, thereby constructing a recombinant strain and realizing the fusion expression of the cellulosome component protein and the polypeptide fragment in the cellulosome-producing bacterial cell.
6) Transforming the plasmid obtained in 3) into the recombinant strain obtained in 5), and realizing the fusion expression of the non-fibrosomal protein and the polypeptide fragment in the cell of the fibrosomal-producing bacteria.
In the finally obtained recombinant strain, the cellosome component protein expressed by genome and the non-cellosome protein expressed by plasmid are covalently cross-linked by means of specific covalent interaction between the fused polypeptide fragments I and II, and are assembled in the cellosome complex.
Wherein the non-fibrosomal protein is linked to the components of the fibrosome by tandem expression, specifically: the fusion expression of non-fibrosomal proteins with the assembly modules of the fibrosomes or protein components with the assembly modules, the assembly of non-fibrosomal proteins in the fibrosomal complex is achieved by specific non-covalent interactions between the assembly modules. The fusion is expressed as: genes encoding non-fibrosomal proteins are inserted into the genome at the N-terminus, C-terminus, or in the middle of the domain sequence of the sequence encoding the fibrosomal component proteins.
The corresponding modules are an adhesion module and a butt joint module. The docking module is a base sequence shown in SEQ ID NO 6, SEQ ID NO 9-13 and SEQ ID NO 14, and the adhesion module is an amino acid sequence shown in SEQ ID NO 7. The concrete implementation steps comprise:
1) connecting a non-fibrosomal protein to a gene encoding a type I docking module (SEQ ID NO:6) by gene cloning methods, or
2) Linking non-fibrosomal proteins to the gene encoding the type II adhesion module (SEQ ID NO:7) by means of gene cloning
3) Connecting the recombinant gene sequence of the non-fibrosome protein obtained in 1) or 2) and the assembly module to a fibrosome-producing bacterial expression plasmid
4) Transforming the plasmid obtained in the step 3) into a cellulosome-producing bacterial cell to realize the fusion expression of the non-cellulosome protein and the I-type docking module or the II-type adhesion module in the cellulosome-producing bacterial cell.
In the finally obtained recombinant strain, the non-fibrosome protein expressed by the plasmid is subjected to specific non-covalent interaction with the fibrosome foot-rest protein through the fused I-type docking module or II-type adhesion module, so as to be assembled in a fibrosome complex.
The specific implementation steps of the direct fusion expression comprise:
1) by means of gene cloning, the encoding gene of non-fibrosome protein is connected to the homologous recombinant plasmid of the bacteria producing fibrosome and the homologous arm is designed based on the genome sequence.
2) Transforming the plasmid obtained in the step 1) into a cellulosome-producing bacterial cell, and inserting a coding gene of non-cellulosome protein into the middle of the N end or C end or structural domain sequence of a sequence of the cellulosome component protein on a genome through homologous recombination screening, thereby constructing a recombinant strain and realizing the fusion expression of the non-cellulosome protein and the cellulosome component protein in the cellulosome-producing bacterial cell.
In the finally obtained recombinant strain, the non-fibrosome protein is combined into a fibrosome complex by using an assembly module of a fibrosome component protein fused and expressed with the non-fibrosome protein.
Preferably, the lignocellulose raw material in the step (1) is one or more of corn stalk, wheat straw, shrub twig, wood chip, corncob, rice straw and waste paper; the pretreatment is one or a combination of more of alkaline method, dilute acid method, hydrothermal method, steam explosion method and sulfonation method pretreatment technologies; the pretreated lignocellulose substrate has a lignin content of not higher than 11% and a hemicellulose content of not higher than 12%.
Preferably, the temperature condition in the saccharification step of step (2) is 55-60 ℃, and the solid-liquid weight-volume ratio in the hydrolysis system is 1:3-1: 10.
Preferably, in the step (3), after the glucose concentration is 60-150g/L, the sugar solution is fed into the bioreactor through a filter assembly equipped at the outlet of the fermentation tank. The nitrogen supplementing operation specifically comprises the following steps: and feeding 50% (w/v) of corn steep liquor solution for nitrogen supplement.
The invention has the beneficial effects that:
(1) the invention provides a method for culturing microalgae by taking lignocellulose as a raw material, fermentable sugar liquor from the lignocellulose can be used as a fermentation carbon source of various microalgae with heterotrophic growth capacity, the raw material source is wide and cheap, and the method is beneficial to the rapid development of the microalgae industry.
(2) Compared with the existing fermentation process adopting glucose from corn starch as a carbon source, the process provided by the invention adopts a strategy of combining lignocellulose biomass saccharification and microalgae heterotrophic fermentation, and adopts lignocellulose biomass as a raw material, so that the production cost of microalgae heterotrophic fermentation is obviously reduced, and the problem of comprehensive utilization of agricultural and forestry wastes is solved.
(3) The process of the invention adopts cellulase preparation based on cellulosome-producing bacteria to realize saccharification of lignocellulose, and compared with the prior art which combines straw enzymolysis with microalgae fermentation, the process obviously reduces the enzyme cost in the saccharification stage, and the saccharification efficiency of cellulose is 80-90%.
(4) In the process, the lignocellulose saccharification stage culture medium and the fermentation culture medium can be recycled, so that water and chemicals can be obviously saved, and the process has the obvious effects of reducing wastewater discharge and cost; the two points have important significance in industry, have great economic benefit and are environment-friendly, and can be carried out for a longer time.
Detailed Description
The present invention will be further described with reference to the following examples.
Example 1: construction of a cellulase preparation based on Clostridium thermocellum cellulosome by means of indirect ligation
The plasmid HR-K was constructed by cloning tdk expression cassette (containing the promoter of gapDH gene) and pyrF expression cassette (containing the pyrF self-promoter) into the downstream of the antibiotic gene cat of plasmid pHK (Mohr, G., Hong, W., Zhang, J., Cui, G., Z., Yang, Y., Cui, Q., et al. (2013) A targeting system for gene targeting in thermophiles and its application in cloning, PLoS One 8: e 699.) by seamless cloning, and by designing primers, adding NheI and XbaI cleavage sites between tdk and pyrF expression cassette, adding eagI and MluI cleavage sites downstream of pyrF for cloning of homologous arm fragments.
The targeting knock-in site was chosen between the enzymatic catalytic domain of cellulase Cel9K (exocellulase, encoded by the 2113813 to 2111293 nucleic acid sequence in genomic CP002416.1) in clostridium thermocellum cellulosome and the docking module. Firstly, a coding gene of beta-1, 4-glucosidase BglA (Genbank serial number is AFO70070.1) is used as a target sequence, and the enzyme cutting sites of MluI and EagI are utilized to clone into a homologous recombinant plasmid pHK-HR, so as to construct the homologous recombinant plasmid pHK-HR-BglA. The upstream homology arm HR-up sequence is the nucleic acid sequence 2111347 to 2112870 in the genome of C.thermocellum DSM1313 (sequence number CP002416.1 in NCBI database), the downstream homology arm HR-down is the nucleic acid sequence 2109848 to 2111354 in the genome of DSM1313, and the intermediate homology arm HR-short is the nucleic acid sequence 2111347 to 2111659 in the genome of DSM 1313. Secondly, the constructed plasmid is transformed into delta pyrF, and the chassis strain is obtained by screening according to three steps. The specific screening method comprises the following steps:
1) the homologous recombinant plasmid pHK-HR was transformed into a pyrF-deleted strain using GS-2 semisolid Medium (KH) containing thiamphenicol2PO4 1.5g/L,K2HPO4·3H2O3.8 g/L, urea 2.1g/L, MgCl2·6H2O 1.0g/L,CaCl2·2H2O 150mg/L,FeSO4·6H2O1.25 mg/L, cysteine 1.0g/L, MOPS sodium salt 10g/L, yeast extract 6.0g/L, cellobiose 5.0g/L, trisodium citrate dihydrate 3.0g/L, resazurin 0.1mg/L, pH 7.4) plates were screened to obtain plasmid transformants.
2) The transformants obtained were cultured in MJ broth (KH)2PO4 1.5g/L,K2HPO4·3H2O3.8 g/L, urea 2.1g/L, MgCl2·6H2O 1.0g/L,CaCl2·2H2O 150mg/L,FeSO4·6H2O1.25 mg/L, cysteine 1.0g/L, MOPS sodium salt 10g/L, cellobiose 5.0g/L, trisodium citrate dihydrate 3.0g/L, resazurin 0.1mg/L, pyridoxamine hydrochloride 2mg/L, biotin 0.2mg/L, p-aminobenzoic acid 0.4mg/L, vitamin B120.2 mg/L, pH 7.4) for three transfers, and then coating MJ semisolid culture medium containing 10 μ g/mL 5-Fluorodeoxyuridine (FUDR) for the first homologous recombination screening. In this step, Tdk can convert FUDR into F-dUMP toxic to cells, and the underpan cells can survive in MJ culture medium only by means of uracil nucleotide synthesized by pyrF gene on plasmid, so that the screening strategy ensures that homologous recombination module on plasmid and genome are homologously recombined and the recombined plasmid is lost. According to the principle that the long homologous arms are preferentially subjected to homologous recombination, the two front and back long homologous arms are firstly subjected to homologous recombination with a genome, and the obtained recombinants are restored to prototrophy from uracil auxotrophs of the starting strain.
3) The recombinants obtained after the first homologous recombination are firstly passaged for 3 times in a GS-2 liquid culture medium, and the bacterial liquid is coated with a GS-2 semisolid culture medium containing 500 mu g/mL 5-fluoroorotic acid (FOA) for screening after being subjected to gradient dilution by using the same culture medium, so that the target scarless gene knockout/knock-in strain is obtained. In this step, the inverse selection of PyrF will drive the upstream long and short homology arms to undergo a second homologous recombination to remove the pyrF expression cassette from the genome. The mutant strain after the second homologous recombination is changed into uracil auxotrophy from prototrophy. Thereby realizing the knockout, knock-in or replacement of the target site gene on the genome. Homologous recombinant strains delta pyrF-I or delta pyrF-II were obtained, respectively, expressing the fusion protein of Cel48S with polypeptide fragment I or polypeptide fragment II, respectively.
The 5' end of cellulose exonuclease Cel48S (coded by 3228088 to 3230229 nucleic acid sequences in genome CP002416.1) of the clostridium thermocellum cellulosome is selected as a target knock-in site, the coding sequences of two fragments of a polypeptide fragment I (SEQ ID NO:4) or a polypeptide fragment II (SEQ ID NO:5) are used as target sequences, the enzyme cutting sites of MluI and EagI are respectively cloned into a homologous recombinant plasmid pHK-HR, and the homologous recombinant plasmid pHK-HR-I or pHK-HR-II is respectively constructed and obtained. The upstream arm HR-up is the nucleic acid sequence 3230200 to 3230700 in the C.thermocellum DSM1313 genome (sequence number CP002416.1 in NCBI database), the downstream arm HR-down is the nucleic acid sequence 3229699 to 3230199 in the DSM1313 genome, and the intermediate arm HR-short is the nucleic acid sequence 3230200 to 3230500 in the DSM1313 genome. The constructed plasmids are respectively transformed into the constructed chassis strains, and homologous recombinant strains delta pyrF, BglA-I or delta pyrF, BglA-II are obtained according to the three-step screening method.
The polypeptide fragment II or the polypeptide fragment I is connected to the 3' end of xylanase XynA (SEQ ID NO:1) by using an overlap extension polymerase chain reaction method. The ligated recombinant sequence was cloned into the expression plasmid pHK using BamHI and XbaI cleavage sites as the target sequence. Transforming an expression plasmid containing a recombinant sequence of XynA and a polypeptide fragment I into delta pyrF, wherein BglA-II; expression plasmids containing recombinant sequences of XynA and polypeptide fragment II were transformed into Δ pyrF:BglA-I, thereby achieving the binding of Cel48S and XynA through specific covalent interactions between polypeptide fragments I and II. By extracting the cellulosome of the recombinant strain of clostridium thermocellum, it was found that the expressed XynA with covalently bound modules can be secreted extracellularly and interact with Cel48S with covalently bound modules, assembling into a cellulosome complex. The recombinant strain is cultured to the middle logarithmic phase in GS-2 culture medium which takes 5g per liter of cellulose or cellobiose as a carbon source, and can be used as a whole bacterial enzyme preparation for biological saccharification of lignocellulose.
Example 2: construction of a cellulase preparation based on Clostridium thermocellum cellulosome by means of indirect ligation
In contrast to example 1, polypeptide fragment II or polypeptide fragment I was ligated to the 3' end of the cellulosome endonuclease CelZ (SEQ ID NO: 15). The constructed recombinant strain is cultured to the middle logarithmic phase in GS-2 culture medium which takes 5g per liter of cellulose or cellobiose as a carbon source, and can be used as a whole bacterial enzyme preparation for biological saccharification of lignocellulose.
Example 3: construction of a cellulase preparation based on Clostridium thermocellum cellulosome by direct ligation
The method of overlap extension polymerase chain reaction is used for directly connecting the cellulose exonuclease Cel9-48(SEQ ID NO:16) with the sequence of the type II adhesion module CohIIct (SEQ ID NO:7) or the type I docking module DocIct (SEQ ID NO:6) of the clostridium thermocellum, wherein the sequence of the CohIIct or the DocIct is connected to the 3' end of the sequence of the Cel9-48, and the sequence of the Cel9-48-DocIct or the sequence of the Cel9-48-CohIIct is obtained.
The sequence Cel9-48-DocIct or Cel9-48-CohIIct is used as a target sequence, the sequence MluI and EagI enzyme cutting sites are cloned into the homologous recombinant plasmid pHK-HR, and the lactate dehydrogenase gene clo1313_1160 is used as a target replacement sequence to construct the homologous recombinant plasmid pHK-HR-Cel 9-48. The upstream arm HR-up is the nucleic acid sequence 1380180 to 1380679 in the C.thermocellum DSM1313 genome (sequence number CP002416.1 in NCBI database), the downstream arm HR-down is the nucleic acid sequence 1380634 to 1381133 in the DSM1313 genome, and the intermediate arm HR-short is the nucleic acid sequence 1380833 to 1381133 in the DSM1313 genome. The constructed plasmids are respectively transformed into the chassis strains constructed in the embodiment 1, and homologous recombinant strains 1 and 2 are obtained according to the three-step screening method of the embodiment 1. By extracting the recombinant strain of the cellulosome found, Cel9-48 and assembly module fusion protein can be secreted extracellular, and through the noncovalent cross-linked interaction mode assembly into the cellulosome complex. The recombinant strain is cultured to the middle logarithmic phase in GS-2 culture medium which takes 5g per liter of cellulose or cellobiose as a carbon source, and can be used as a whole bacterial enzyme preparation for biological saccharification of lignocellulose.
Example 4: construction of a cellulase preparation based on Clostridium thermocellum cellulosome by direct ligation
The homologous recombinant plasmid pHK-HR-epn was constructed by using the gene encoding the swollenin Epn (SEQ ID NO:2) as the target sequence and selecting the 5' end of the horse protein SdbA of Clostridium thermocellum cellulosome (encoded by the nucleic acid sequence 1108113 to 1109912 in genomic CP002416.1) as the targeting knock-in site. The upstream arm HR-up is the nucleic acid sequence 1107610 to 1108109 in the C.thermocellum DSM1313 genome (sequence number CP002416.1 in NCBI database), the downstream arm HR-down is the nucleic acid sequence 1109916 to 1110415 in the DSM1313 genome, and the intermediate arm HR-short is the nucleic acid sequence 1107809 to 1108109 in the DSM1313 genome.
The xylanase XynA (SEQ ID NO:1) is directly linked to the sequence of the type II adhesion module CohII (SEQ ID NO:7) by the overlap extension polymerase chain reaction method, wherein the sequence of CohII is linked to the 3' end of the XynA sequence, thereby obtaining the XynA-CohII sequence. The XynA-CohII sequence is used as a target sequence, the MluI and EagI enzyme cutting sites are cloned into the homologous recombinant plasmid pHK-HR, and the lactate dehydrogenase gene clo1313_1878 is used as a target replacement sequence to construct the homologous recombinant plasmid pHK-HR-xynA. The upstream arm HR-up is the nucleic acid sequence 2194853 to 2195353 in the C.thermocellum DSM1313 genome (sequence number CP002416.1 in NCBI database), the downstream arm HR-down is the nucleic acid sequence 2196312 to 2196811 in the DSM1313 genome, and the intermediate arm HR-short is the nucleic acid sequence 2195053 to 2195353 in the DSM1313 genome.
Directly connecting a pectinase PelA (SEQ ID NO:18) encoding gene with a sequence (SEQ ID NO:6) of a type I docking module DocIct of clostridium thermocellum by using an overlap extension polymerase chain reaction method, wherein the sequence of the DocIct is connected to the 3' end of the PelA sequence to obtain a PelA-DocIct target sequence. And cloning the connected recombinant sequence serving as a target sequence to an expression plasmid pHK by utilizing BamHI and XbaI enzyme cutting sites to obtain the expression plasmid pHK-Pcel S-PelA-DocIct. The pHK carries the promoter and signal peptide sequence (SEQ ID NO:8) of the cellulase Cel48S derived from Clostridium thermocellum, so that the expressed target gene can be secreted to the outside of the cell.
The homologous recombinant plasmid pHK-HR-xynA was transformed into the recombinant strain 1 constructed in example 3, and the homologous recombinant strain 3 was obtained according to the screening method described in example 1. The homologous recombinant plasmid pHK-HR-epn was transformed into recombinant strain 3, and homologous recombinant strain 4 was obtained in the same manner as in the screening method described in example 1. Finally, plasmid pHK-Pcel S-PelA-DocIct was transformed into recombinant strain 4, thereby obtaining recombinant strain 5 of Clostridium thermocellum simultaneously expressing XynA with type II adhesion module, Cel9-48 and PelA with type I docking module and fusion protein Epn-SdbA.
By extracting the cellulosome of the recombinant strain, the expressed xylanase XynA, cellulose exonuclease Cel9-48 and pectinase PelA are combined on the cellulosome of the clostridium thermocellum in a direct connection mode, and the expansion factor Epn can be secreted and assembled into a cellulosome complex through the fusion expression with a foot stool protein SdbA. The recombinant strain 5 is cultured to the middle logarithmic phase in GS-2 culture medium with 5g per liter of cellulose or cellobiose as a carbon source, and can be used as a whole bacterial enzyme preparation for biological saccharification of lignocellulose.
Example 5: construction of a cellulase preparation based on Clostridium thermocellum cellulosome by direct ligation
The recombinant strain 5 constructed in example 4 was cultured in GS-2 medium with 5g per liter of cellulose as carbon source to late log phase or early plateau phase, and then the precipitated cells were removed by low speed centrifugation, and the supernatant could be used as a cellulosome enzyme preparation for biological saccharification of lignocellulose.
Example 6: construction of cellulase preparations based on C.flavum cellulosomes by means of direct ligation
The sequence of Cel48S-DocIcCl was obtained by ligating the cellulose exonuclease Cel48S to the type I docking module sequence of C.cellulolyticum DocIcCl (SEQ ID NO:9) by the overlap extension polymerase chain reaction method, wherein the sequence of DocIcIcCl was ligated to the 3' end of the sequence of Cel 48S. Then the recombined sequences which are connected are used as target sequences to be cloned on an expression plasmid pHK by utilizing BamHI and XbaI enzyme cutting sites. The constructed plasmid was transformed into Clostridium flavum (Clostridium clariflavum DSM 19732) to obtain an expressed recombinant strain Cel48S with DocIccl. By extracting the recombinant strain's cellulosomes, it was found that the expressed Cel48S with DocIccl can be secreted extracellularly and assembled into the yellow clostridium cellulosome complex. The strain is cultured in a GS-2 culture medium taking 5g per liter of cellulose as a carbon source to the late logarithmic phase or the early plateau phase, then sediment cells are removed through low-speed centrifugation, and supernatant can be used as a cellulosome enzyme preparation for biological saccharification of lignocellulose.
Example 7: construction of cellulase preparations based on the cellulosomes of Ruminococcus albus by direct ligation
Different from example 6, the cellulose exonuclease Cel48S and Ruminococcus albus type I docking module sequence DocIra (SEQ ID NO:10) were linked to obtain the Cel48S-DocIra sequence. The constructed plasmid is transformed into rumen coccus albus SY3 to obtain the recombinant strain of Cel48S with DocIra. By extracting the recombinant strain's cellulosomes, it was found that the expressed Cel48S with DocIra was extracellularly secreted and assembled into ruminococcus albus-cellulosome complexes. The strain is cultured in a GS-2 culture medium taking 5g per liter of cellulose as a carbon source to the late logarithmic phase or the early plateau phase, then sediment cells are removed through low-speed centrifugation, and supernatant can be used as a cellulosome enzyme preparation for biological saccharification of lignocellulose.
Example 8: construction of cellulase preparations based on cellulosomes of Ruminococcus xanthus by direct ligation
Different from example 6, the cellulose exonuclease Cel48S and Ruminococcus xanthus I docking module sequence DocIrf (SEQ ID NO:11) were linked to obtain the Cel48S-DocIrf sequence. The constructed plasmid is transformed into rumen luteinizing coccus (Ruminococcus flavefaciens) to obtain an expressed recombinant strain of Cel48S with DocIrf. By extracting the recombinant strain's cellulosomes, it was found that the expressed Cel48S with DocIrf can be secreted extracellularly and assembled into the ruminococcus xanthans cellulosome complex. The strain is cultured in a GS-2 culture medium taking 5g per liter of cellulose as a carbon source to the late logarithmic phase or the early plateau phase, then sediment cells are removed through low-speed centrifugation, and supernatant can be used as a cellulosome enzyme preparation for biological saccharification of lignocellulose.
Example 9: construction of cellulase preparations based on the cellulosome of Pseudomonas cellulolyticus by direct ligation
In contrast to example 6, the sequence Cel48S-DocIpc was obtained by ligating the cellulose exonuclease Cel48S with the type I docking module sequence DocIpc (SEQ ID NO:13) of Pseudobacteroides cellulolyticus. The constructed plasmid was transformed into Pseudobacteroides cellulolyticus (Pseudomonas cellulosolvalensis DSM 2933) to obtain a recombinant strain of Cel48S with DocPpc expressed. By extracting the recombinant strain's cellulosome, it was found that the expressed Cel48S with DocIpc could be secreted extracellularly and assembled into a bacteroides cellulosome complex. The strain is cultured in a GS-2 culture medium taking 5g per liter of cellulose as a carbon source to the late logarithmic phase or the early plateau phase, then sediment cells are removed through low-speed centrifugation, and supernatant can be used as a cellulosome enzyme preparation for biological saccharification of lignocellulose.
Example 10: construction of cellulase preparations based on C.cellulophilus cellulosomes by direct ligation
The 5' end of the cellulase Clocel _2823 (encoded by the 3464080 to 3466140 nucleic acid sequence in genomic CP002160.1) of Clostridium cellulophilus cellulosome was selected as the targeting knock-in site, using the gene encoding the protease ProL (SEQ ID NO:3) as the target sequence. The enzyme cutting sites of MluI and EagI are cloned into the homologous recombinant plasmid pHK-HR to construct the homologous recombinant plasmid pHK-HR-ProL. Homology arms HR-up, HR-down and HR-short are the 3466141 to 3466640, 3465641 to 3466140 and 3466141 to 3466441 nucleic acid sequences, respectively, in the genome of Clostridium cellulovorans 743B (sequence number CP002160.1 in the NCBI database). The constructed plasmids are respectively transformed into pyrF deleted 743B mutant strains, and homologous recombinant bacteria expressed by fusion of protease ProL and cellulase Clocel _2823 are obtained by screening according to the method of the embodiment 1. By extracting the recombinant strain's cellulosome, it was found that the fusion protein can be secreted extracellularly and assembled into a cellulosome complex. The strain is cultured in a GS-2 culture medium taking 5g per liter of cellulose as a carbon source to the late logarithmic phase or the early plateau phase, then sediment cells are removed through low-speed centrifugation, and supernatant can be used as a cellulosome enzyme preparation for biological saccharification of lignocellulose.
Example 11: construction of cellulase preparations based on the cellulosomes of Clostridium cellulolyticum by direct ligation
In contrast to example 10, the gene encoding amylase AmyA (SEQ ID NO:17) was used as the target sequence, and the 5' end of cellulase Ccel _0729 (encoded by the nucleic acid sequence 843122 to 845197 in genomic CP 001348.1) of C.cellulolyticum cellulosome was selected as the targeted knock-in site. Homology arms HR-up, HR-down and HR-short are nucleic acid sequences 842441 to 842941, 842942 to 843441 and 842641 to 842941, respectively, in the genome of Clostridium cellulolyticum H10 (SEQ ID NO: NC-011898 in the NCBI database). And respectively transforming the constructed plasmids into pyrF-deleted H10 mutant strains, and screening to obtain homologous recombinant bacteria expressed by fusion of amylase AmyA and cellulase Ccel _ 0729. By extracting the recombinant strain's cellulosome, it was found that the fusion protein can be secreted extracellularly and assembled into a cellulosome complex. The strain is cultured in a GS-2 culture medium taking 5g per liter of cellulose as a carbon source to the late logarithmic phase or the early plateau phase, then sediment cells are removed through low-speed centrifugation, and supernatant can be used as a cellulosome enzyme preparation for biological saccharification of lignocellulose.
Example 12: construction of cellulase preparations based on the cellulosome of Vibrio cellulolyticus by direct ligation
In contrast to example 10, the gene encoding pectinase PelA (SEQ ID NO:18) was ligated to the type I docking module sequence DocIac (SEQ ID NO:14) of Vibrio cellulolyticus to obtain a PelA-DocIac sequence. The constructed plasmid was transformed into Vibrio cellulolyticus (Acetivibrio cellulolyticus). By extracting the recombinant strain cellulosome, it was found that the expressed PelA can be secreted extracellularly and assembled into the vibrio cellulosome complex of vibrio cellulolyticus by the possessed DocIac. The strain is cultured in a GS-2 culture medium taking 5g per liter of cellulose as a carbon source to the late logarithmic phase or the early plateau phase, then sediment cells are removed through low-speed centrifugation, and supernatant can be used as a cellulosome enzyme preparation for biological saccharification of lignocellulose.
Example 13: culturing microalgae by adopting lignocellulose
(1) Pretreatment: pretreating corn straws according to a sulfonation method adopted in the literature (Chinese paper making, 2015,34,1-6) to obtain a lignocellulose substrate with the lignin content of not higher than 11% and the hemicellulose content of not higher than 10%;
(2) saccharification: 1kg of the lignocellulosic substrate obtained in the step (1) was transferred to 6L of the medium in an anaerobic fermentation tank in a solid-liquid weight-to-volume ratio of 1:6, and then the cellulase preparation prepared in example 1 was added to the lignocellulosic substrate to conduct hydrolysis reaction at a temperature of 55 ℃ to obtain a glucose-containing sugar solution. The saccharification culture medium comprises: 2.9g/L of dipotassium phosphate, 1.5g/L of monopotassium phosphate, 0.8g/L of urea, 0.1g/L of calcium chloride, 1.8g/L of magnesium chloride, 0.0005g/L of ferrous sulfate, 2g/L of sodium sulfide, 4g/L of corn steep liquor and 2g/L, pH 6.5.5-7.5 of trisodium citrate. During saccharification, the pH can be controlled to be 5.8-6.2 by feeding sodium hydroxide.
(3) Heterotrophic microalgae fermentation: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 70-80g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated nannochloropsis oculata seed liquid, and fermenting for 5 days at 25 ℃ in a light cycle 12:12 mode until the glucose concentration is not higher than 5 g/L.
The fermentation medium comprises the following components in percentage by mass: 0.3 percent of yeast powder, 0.6 percent of corn steep liquor, 0.3 percent of monopotassium phosphate, 0.03 percent of magnesium sulfate heptahydrate, 0.3 percent of sodium nitrate and the balance of water, and the pH value is 6.0.
(4) And (3) post-treatment: and (4) centrifuging the fermentation liquor obtained in the step (3), and separating algae cells from the fermented culture medium.
(5) Reusing a culture medium: and (3) directly using the culture medium obtained after the solid-liquid separation in the step (4) without dilution to prepare the saccharification culture medium in the step (2).
Example 14: culturing microalgae by adopting lignocellulose
In contrast to the embodiment 13, in this case,
(1) pretreatment: pretreating wheat straws according to a hydrothermal and sulfonation combined pretreatment method adopted in CN201610133959 to obtain a lignocellulose substrate with the lignin content of not more than 8% and the hemicellulose content of not more than 8%;
(2) saccharification: 100kg of the lignocellulosic substrate obtained in the step (1) was transferred to 350L of the medium in an anaerobic fermentation tank in a solid-liquid weight-to-volume ratio of 1:3.5, and then the cellulase preparation prepared in example 2 was added to the lignocellulosic substrate to conduct hydrolysis reaction at a temperature of 60 ℃ to obtain a glucose-containing sugar solution.
(3) Fermenting microalgae: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 140-150g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at the outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then, the activated scenedesmus seed solution was inoculated, the sugar solution obtained in the step (2) of example 14 was continuously fed so that the sugar concentration was maintained at 5 to 10g/L, the mixture was fermented at 28 ℃ and pH 6.5 for 7 days, and 50% (w/v) of corn steep liquor solution was fed to supplement nitrogen.
(4) And (3) post-treatment: same as in example 13.
(5) Reusing a culture medium: diluting the culture medium obtained after the solid-liquid separation in the step (4) by 3 times, and then using the diluted culture medium to prepare the saccharification culture medium in the step (2).
Example 15: culturing microalgae by adopting lignocellulose
In contrast to the embodiment 13, in this case,
(1) pretreatment: pretreating shrub branches according to an alkaline pretreatment technology in a document (Bin Li, et al. registration progress on the pretreatment and fractionation for Biorefinery at QIBEBT. journal of biosources and Bioproducts,2017,2(1),4-9) to obtain a lignocellulose substrate with the lignin content of not more than 15% and the hemicellulose content of not more than 7.5%;
(2) saccharification: 100kg of the lignocellulosic substrate obtained in the step (1) was transferred to 800L of a medium in an anaerobic fermentation tank at a solid-liquid weight-to-volume ratio of 1:8, and then the cellulase preparation prepared in example 3 was added to the lignocellulosic substrate to conduct hydrolysis reaction at a temperature of 60 ℃ to obtain a glucose-containing sugar solution.
(3) Fermenting microalgae: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 90-110g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated chlorella seed solution, continuously adding sugar solution obtained in step (2) to maintain sugar concentration at 5-10g/L, fermenting at 30 deg.C and pH of 6.0 for 8 days, and adding 50% (w/v) corn steep liquor to supplement nitrogen.
(4) And (3) post-treatment: same as in example 13.
(5) Reusing a culture medium: diluting the culture medium obtained after the solid-liquid separation in the step (4) by 2 times, and then using the diluted culture medium to prepare the saccharification culture medium in the step (2).
Example 16: culturing microalgae by adopting lignocellulose
In contrast to the embodiment 13, in this case,
(1) pretreatment: pretreating the wood chips according to a pretreatment technology combining an alkaline method and hydrothermal method in the literature (Biotechnology for Biofuels, 2014, 7:116) to obtain a lignocellulose substrate with the lignin content of not higher than 11% and the hemicellulose content of not higher than 10%;
(2) saccharification: 100kg of the lignocellulosic substrate obtained in the step (1) was transferred to 1000L of the medium in an anaerobic fermenter at a solid-liquid weight-to-volume ratio of 1:10, and then the cellulase preparation prepared in example 4 was added to the lignocellulosic substrate to conduct hydrolysis reaction at a temperature of 60 ℃ to obtain a glucose-containing sugar solution.
(3) Fermenting microalgae: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 60-70g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated Crypthecodinium cohnii seed solution, fermenting at 20 deg.C for 3 days, and adding 50% (w/v) corn steep liquor for nitrogen supplement.
(4) And (3) post-treatment: same as in example 13.
(5) Reusing a culture medium: diluting the culture medium obtained after the solid-liquid separation in the step (4) by 2 times, and then using the diluted culture medium to prepare the saccharification culture medium in the step (2).
Example 17: culturing microalgae by adopting lignocellulose
In contrast to the embodiment 13, in this case,
(1) pretreatment: pretreating straws according to a steam explosion pretreatment technology in a document (cellulose science and technology, 2002, 3, 47-52) to obtain a lignocellulose substrate with the lignin content of not higher than 20 percent and the hemicellulose content of not higher than 14.5 percent;
(2) saccharification: 1kg of the lignocellulosic substrate obtained in the step (1) was transferred to 5L of the medium in an anaerobic fermenter at a solid-liquid weight-to-volume ratio of 1:5, and then the cellulase preparation prepared in example 5 was added to the lignocellulosic substrate to conduct hydrolysis reaction at a temperature of 58 ℃ to obtain a glucose-containing sugar solution.
(3) Fermenting microalgae: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 50-60g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated spirulina seed solution, fermenting for 7 days at 34 deg.C and pH of 8.0 with photoperiod of 18:6, continuously adding sugar solution obtained in step (2) of example 14 to maintain sugar concentration at 5-10g/L, and adding 50% (w/v) corn steep liquor for nitrogen supplement.
(4) And (3) post-treatment: same as in example 13.
(5) Reusing a culture medium: diluting the culture medium obtained after the solid-liquid separation in the step (4) by 2 times, and then using the diluted culture medium to prepare the saccharification culture medium in the step (2).
Example 18: culturing microalgae by adopting lignocellulose
In contrast to the embodiment 13, in this case,
(1) pretreatment: pretreating waste paper according to hydrothermal pretreatment Technology in literature (Bioresource Technology, 2004, 91, 93-100) to obtain lignocellulose substrate with lignin content of no more than 7% and hemicellulose content of no more than 11%;
(2) saccharification: 1kg of the lignocellulosic substrate obtained in the step (1) was transferred to 2L of the medium in an anaerobic fermenter at a solid-liquid weight-to-volume ratio of 1:2, and then the cellulase preparation prepared in example 6 was added to the lignocellulosic substrate to conduct hydrolysis reaction at a temperature of 37 ℃ to obtain a glucose-containing sugar solution.
(3) Fermenting microalgae: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 160-180g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated chlorella seed solution, fermenting for 9 days at 28 deg.C and pH of 6.0 with photoperiod 18:6, continuously adding sugar solution obtained in step (2) of example 14 to maintain sugar concentration at 5-10g/L, and adding 50% (w/v) corn steep liquor for nitrogen supplement.
(4) And (3) post-treatment: same as in example 13.
(5) Reusing a culture medium: diluting the culture medium obtained after the solid-liquid separation in the step (4) by 3 times, and then using the diluted culture medium to prepare the saccharification culture medium in the step (2).
Example 19: culturing microalgae by adopting lignocellulose
In contrast to the embodiment 13, in this case,
(1) pretreatment: pretreating wheat straws according to the pretreatment technology of the embodiment 13 to obtain a lignocellulose substrate with the lignin content of not higher than 8% and the hemicellulose content of not higher than 11%;
(2) saccharification: 0.2kg of the lignocellulosic substrate obtained in the step (1) was transferred to 3L of the medium in an anaerobic fermenter at a solid-liquid weight-to-volume ratio of 1:15, and then the cellulase preparation prepared in example 7 was added to the lignocellulosic substrate to conduct hydrolysis reaction at a temperature of 37 ℃ to obtain a glucose-containing sugar solution.
(3) Fermenting microalgae: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 30-50g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated chlorella seed liquid, and fermenting for 5 days under the temperature condition of 30 ℃ and the pH condition of 6.5; the sugar solution obtained in the step (2) of example 14 was continuously fed so that the sugar concentration was maintained at 5 to 10g/L, and 50% (w/v) of a corn steep liquor solution was fed to supplement nitrogen.
(4) And (3) post-treatment: same as in example 13.
(5) Reusing a culture medium: and (3) directly using the culture medium obtained after the solid-liquid separation in the step (4) without dilution to prepare the saccharification culture medium in the step (2).
Example 20: culturing microalgae by adopting lignocellulose
In contrast to the embodiment 13, in this case,
(1) pretreatment: pretreating wheat straws according to the pretreatment technology of the embodiment 13 to obtain a lignocellulose substrate with the lignin content of not higher than 8% and the hemicellulose content of not higher than 11%;
(2) saccharification: 0.2kg of the lignocellulosic substrate obtained in the step (1) was transferred to 2L of the medium in an anaerobic fermentation tank in a solid-liquid weight-to-volume ratio of 1:10, and then the cellulase preparation prepared in example 8 was added to the lignocellulosic substrate to conduct hydrolysis reaction at a temperature of 65 ℃ to obtain a glucose-containing sugar solution.
(3) Fermenting microalgae: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 40-60g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated chlorella seed liquid, fermenting for 7 days under the temperature condition of 30 ℃ and the pH condition of 6.5, and continuously feeding sugar liquid obtained in the step (2) of the example 14 to maintain the sugar concentration at 5-10 g/L; and feeding 50% (w/v) of corn steep liquor solution for nitrogen supplement.
(4) And (3) post-treatment: same as in example 13.
(5) Reusing a culture medium: diluting the culture medium obtained after the solid-liquid separation in the step (4) by 1 time and then using the diluted culture medium to prepare the saccharification culture medium in the step (2).
Example 21: culturing microalgae by adopting lignocellulose
In contrast to the embodiment 13, in this case,
(1) pretreatment: carrying out pretreatment on wheat straws according to the pretreatment technology in the embodiment 14 to obtain a lignocellulose substrate with the lignin content of not higher than 8% and the hemicellulose content of not higher than 8%;
(2) saccharification: 1kg of the lignocellulosic substrate obtained in the step (1) was transferred to 4.5L of the medium in an anaerobic fermenter at a solid-liquid weight-to-volume ratio of 1:4.5, and then the cellulase preparation prepared in example 9 was added to the lignocellulosic substrate to conduct hydrolysis reaction at a temperature of 34 ℃ to obtain a glucose-containing sugar solution.
(3) Fermenting microalgae: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 110-; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated spirulina seed liquid, and fermenting for 10 days at 32 ℃ and pH of 9.0 in a mode of 12:12 photoperiod; the sugar solution obtained in the step (2) of example 14 was continuously fed so that the sugar concentration was maintained at 5 to 10g/L, and 50% (w/v) of a corn steep liquor solution was fed to supplement nitrogen.
(4) And (3) post-treatment: same as in example 13.
(5) Reusing a culture medium: diluting the culture medium obtained after the solid-liquid separation in the step (4) by 2 times and then using the diluted culture medium to prepare the saccharification culture medium in the step (2).
Example 22: culturing microalgae by adopting lignocellulose
In contrast to the embodiment 13, in this case,
(1) pretreatment: pretreating corncobs according to a dilute acid hydrolysis pretreatment technology in a literature (bioprocessing process, 2010, 3, 66-72) to obtain a lignocellulose substrate with the lignin content of not higher than 9% and the hemicellulose content of not higher than 13%;
(2) saccharification: 0.4kg of the lignocellulosic substrate obtained in the step (1) was transferred to 2L of the medium in an anaerobic fermentation tank in a solid-liquid weight-to-volume ratio of 1:5, and then the cellulase preparation prepared in example 10 was added to the lignocellulosic substrate to conduct hydrolysis reaction at a temperature of 42 ℃ to obtain a glucose-containing sugar solution.
(3) Fermenting microalgae: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 60-80g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated spirulina seed liquid, and fermenting for 7 days under the temperature condition of 30 ℃ and the pH condition of 8.5 by adopting a mode of 18:6 photoperiod; the sugar solution obtained in the step (2) of example 14 was continuously fed so that the sugar concentration was maintained at 5 to 10g/L, and 50% (w/v) of a corn steep liquor solution was fed to supplement nitrogen.
(4) And (3) post-treatment: same as in example 13.
(5) Reusing a culture medium: diluting the culture medium obtained after the solid-liquid separation in the step (4) by 1 time and then using the diluted culture medium to prepare the saccharification culture medium in the step (2).
Example 23: culturing microalgae by adopting lignocellulose
In contrast to the embodiment 13, in this case,
(1) pretreatment: pretreating the waste paper according to the pretreatment technology of the embodiment 17 to obtain a lignocellulose substrate with the lignin content of not more than 7% and the hemicellulose content of not more than 9%;
(2) saccharification: 0.2kg of the lignocellulosic substrate obtained in the step (1) was transferred to 5L of the medium in an anaerobic fermenter at a solid-liquid weight-to-volume ratio of 1:25, and then the cellulase preparation prepared in example 11 was added to the lignocellulosic substrate to conduct hydrolysis reaction at a temperature of 40 ℃ to obtain a glucose-containing sugar solution.
(3) Fermenting microalgae: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 25-35g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated nannochloropsis oculata seed liquid, fermenting for 4 days at 25 ℃, feeding 50% (w/v) corn steep liquor solution for nitrogen supplement, and ending the fermentation when the glucose concentration is not higher than 5 g/L.
(4) And (3) post-treatment: same as in example 13.
(5) Reusing a culture medium: and (3) directly using the culture medium obtained after the solid-liquid separation in the step (4) without dilution to prepare the saccharification culture medium in the step (2).
Example 24: culturing microalgae by adopting lignocellulose
In contrast to the embodiment 13, in this case,
(1) pretreatment: pretreating the corncobs according to the pretreatment technology of the embodiment 17 to obtain a lignocellulose substrate with the lignin content of not higher than 5% and the hemicellulose content of not higher than 25%;
(2) saccharification: 0.2kg of the lignocellulose substrate obtained in the step (1) was transferred to 0.6L of a medium in an anaerobic fermentation tank in a solid-liquid weight-to-volume ratio of 1:3, and the cellulase preparation prepared in example 12 was added to the lignocellulose substrate to conduct hydrolysis reaction at a temperature of 40 ℃ to obtain a glucose-containing sugar solution.
(3) Fermenting microalgae: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 100-120g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated haematococcus pluvialis seed liquid, and fermenting for 5 days in a light cycle 12:12 mode under the temperature condition of 16 ℃ and the pH condition of 7.0; the sugar solution obtained in the step (2) of example 14 was continuously fed so that the sugar concentration was maintained at 5 to 10g/L, and 50% (w/v) of a corn steep liquor solution was fed to supplement nitrogen.
(4) And (3) post-treatment: same as in example 13.
(5) Reusing a culture medium: diluting the culture medium obtained after the solid-liquid separation in the step (4) by 2 times, and then directly using the diluted culture medium to prepare the saccharification culture medium in the step (2).
TABLE 1 tabulated results of examples 13-24 microalgae culture using lignocellulose
Figure BDA0001768641800000181
Figure BDA0001768641800000191
As shown in Table 1, in examples 13 to 24, the method of culturing microalgae using lignocellulose had a cellulose saccharification rate of 82.50 to 90.80%, a microalgae biomass of 15.83 to 90.67g/L, and a cellulose saccharification rate of 80.50 to 90.5% after the reuse of the culture medium. The method for culturing the microalgae by using the lignocellulose has the advantages of wide raw material source and low cost, and the hydrolysis efficiency is greatly improved by the strategy of combining the lignocellulose biomass saccharification with the microalgae heterotrophic fermentation, and the cellulose saccharification efficiency can reach 80-90%. In addition, compared with the cellulose saccharification rate of the first round, the cellulose saccharification rate after the culture medium is reused is almost the same, which shows that in the process of the invention, the culture medium and the fermentation culture medium in the lignocellulose saccharification stage can be recycled, so that water and chemicals can be obviously saved, and the process has the obvious effects of reducing wastewater discharge and reducing cost.
Therefore, the method for culturing the microalgae by adopting the lignocellulose solves the problems of high cost of raw materials and enzyme preparations and low hydrolysis efficiency in the prior art for culturing the microalgae, can generate great economic benefit and has wide market prospect.
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Claims (5)

1. The method for culturing the microalgae by adopting the lignocellulose is characterized by comprising the following steps: the method comprises the following steps:
(1) pretreatment: pretreating a lignocellulose raw material to obtain a lignocellulose substrate with the lignin content of not higher than 20% and the hemicellulose content of not higher than 25%;
(2) saccharification: transferring the lignocellulose substrate obtained in the step (1) into a saccharification culture medium of an anaerobic fermentation tank according to the solid-liquid weight-volume ratio of 1:2-1:25, adding a cellulase preparation into the lignocellulose substrate, and performing hydrolysis reaction at the temperature of 34-65 ℃ to obtain a sugar solution containing glucose; the cellulase preparation is obtained by combining non-cellulosome protein in a cellulosome complex through interaction of the non-cellulosome protein and components in the cellulosome; the cellulosome is a multienzyme complex with lignocellulose degrading activity produced by clostridium thermocellum and secreted extracellularly;
wherein the non-fibrosome protein is specifically: cellulose exonuclease Cel9-48 encoded by nucleic acid sequence 1968724 to 1973904 in genome CP001393.1, bulking factor Epn encoded by SEQ ID NO 2, xylanase XynA encoded by SEQ ID NO 1 and pectinase PelA encoded by nucleic acid sequence 2531445 to 2532785 in genome CP 001393.1;
wherein the 3' end of the cellulose exonuclease Cel9-48 is directly connected with the sequence SEQ ID NO. 6 of the I-type docking module DocIct of the clostridium thermocellum; the expansion factor Epn is expressed by fusion with the 5' end of a foot stool protein SdbA, and the sequence of the foot stool protein SdbA is encoded by 1108113 to 1109912 nucleic acid sequences in a genome CP 002416.1; the 3' end of the xylanase XynA is directly connected with a sequence SEQ ID NO. 7 of a II type adhesion module CohII; the 3' end of the pectinase PelA is directly connected with the sequence SEQ ID NO of the I-type docking module DocIct of the clostridium thermocellum;
(3) heterotrophic microalgae fermentation: when the concentration of glucose in the sugar solution obtained in the step (2) reaches 25-180g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; adding culture medium components into a bioreactor to obtain a fermentation culture medium, and sterilizing at high temperature and high pressure; then inoculating activated microalgae seed liquid, fermenting at 16-34 deg.C for 3-5 days until the glucose concentration is not higher than 5 g/L; or continuously feeding the sugar solution obtained in the step (2) in a flowing manner in the fermentation process to maintain the sugar concentration at 5-10g/L, and fermenting for 5-10 days under the conditions of temperature of 16-34 ℃, nitrogen supplement and pH of 6.0-9.0 to obtain microalgae fermentation liquor;
(4) and (3) post-treatment: and (4) centrifuging the microalgae fermentation liquor obtained in the step (3), and separating algae cells from the fermented culture medium.
2. The method of claim 1, wherein the culturing of microalgae with lignocellulose comprises: further comprising the step (5), specifically: diluting the culture medium obtained after the solid-liquid separation in the step (4) without dilution or 1-3 times dilution, and preparing the saccharification culture medium in the step (2); the microalgae is unicellular photosynthetic microorganism with heterotrophic growth capability, and comprises nannochloropsis, Scenedesmus, Chlorella, Crypthecodinium cohnii, Spirulina, and Haematococcus pluvialis; the nannochloropsis, chlorella, spirulina and haematococcus pluvialis can be subjected to fermentation culture in a photoperiod mode.
3. The method of claim 2, wherein the culturing of the microalgae with lignocellulose comprises: the saccharification culture medium in the step (2) is as follows: 2.9g/L dipotassium phosphate, 1.5g/L monopotassium phosphate, 0.8g/L urea, 0.1g/L calcium chloride, 1.8g/L magnesium chloride, 0.0005g/L ferrous sulfate, 2g/L sodium sulfide, 4g/L corn steep liquor and 2g/L, pH 6.5.5-7.5 trisodium citrate; the fermentation medium in the step (3) comprises the following components in percentage by mass: 0.3 percent of yeast powder, 0.6 percent of corn steep liquor, 0.3 percent of monopotassium phosphate, 0.03 percent of magnesium sulfate heptahydrate, 0.3 percent of sodium nitrate and the balance of water, and the pH value is 6.0.
4. The method of claim 2, wherein the culturing of the microalgae with lignocellulose comprises: the lignocellulose raw material in the step (1) is one or a combination of a plurality of corn stalks, wheat straws, shrub branches, wood chips, corncobs, straws and waste paper; the pretreatment is one or a combination of more of alkaline method, dilute acid method, hydrothermal method, steam explosion method and sulfonation method pretreatment technologies; the pretreated lignocellulose substrate has the lignin content of not higher than 11 percent and the hemicellulose content of not higher than 12 percent; the temperature condition in the saccharification step in the step (2) is 55-60 ℃, and the solid-liquid weight-volume ratio in a hydrolysis system is 1:3-1: 10.
5. The method of claim 2, wherein the culturing of the microalgae with lignocellulose comprises: in the step (3), after the concentration of the glucose is 60-150g/L, enabling the sugar solution to enter a bioreactor through a filtering component assembled at an outlet of a fermentation tank; fermenting at 16-30 deg.C for 3-5 days until the glucose concentration is not higher than 5g/L, or continuously adding sugar solution obtained in step (2) during fermentation to maintain the sugar concentration at 5-10g/L, and fermenting at 16-30 deg.C under nitrogen-supplementing and pH of 6.0-6.5 for 5-10 days; the nitrogen supplementing operation specifically comprises the following steps: and feeding 50% (w/v) of corn steep liquor solution for nitrogen supplement.
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