CN108570495A - A kind of the rapid amplifying diagnostic kit and amplification method of HLA high-resolution gene loci - Google Patents

A kind of the rapid amplifying diagnostic kit and amplification method of HLA high-resolution gene loci Download PDF

Info

Publication number
CN108570495A
CN108570495A CN201810037261.9A CN201810037261A CN108570495A CN 108570495 A CN108570495 A CN 108570495A CN 201810037261 A CN201810037261 A CN 201810037261A CN 108570495 A CN108570495 A CN 108570495A
Authority
CN
China
Prior art keywords
amplification
hla
primer
sequence
amplimer
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CN201810037261.9A
Other languages
Chinese (zh)
Inventor
郑超
陈素华
吴祚达
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
New Open Source Bo Chang (wuhan) Biotechnology Co Ltd
Original Assignee
New Open Source Bo Chang (wuhan) Biotechnology Co Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by New Open Source Bo Chang (wuhan) Biotechnology Co Ltd filed Critical New Open Source Bo Chang (wuhan) Biotechnology Co Ltd
Priority to CN201810037261.9A priority Critical patent/CN108570495A/en
Publication of CN108570495A publication Critical patent/CN108570495A/en
Pending legal-status Critical Current

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6881Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for tissue or cell typing, e.g. human leukocyte antigen [HLA] probes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Cell Biology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The invention discloses a kind of rapid amplifying diagnostic kit of HLA high-resolution gene loci and amplification method, the amplification kit includes archaeal dna polymerase and amplimer, and HLA high-resolution gene locis are HLA DRB1, template sequence such as sequence table SEQ ID NO:Shown in 1, amplimer is used for linearized index PCR amplification, amplimer upstream sequence such as sequence table SEQ ID NO:Shown in 2, downstream sequence such as sequence table SEQ ID NO:Shown in 3.The present invention uses the target fragment amplification method of linearized index amplification, the amplimer amplification efficiency of Precise spraying is high and mispairing is few, not only considerably increase amplification efficiency, and it directly amplifies single stranded DNA and can be directly used for pyrosequencing, without amplified production is marked and double-strand separation, lengthy and tedious experimental procedure is avoided, damage of the strong basic reagent to amplified fragments is decreased.

Description

A kind of the rapid amplifying diagnostic kit and amplification method of HLA high-resolution gene loci
Technical field
The present invention relates to a kind of rapid amplifying diagnostic kit of HLA high-resolution gene loci and amplification methods, belong to raw Object field, especially field of biological detection.
Background technology
Human leukocyte antigen (HLA) is human major histocompatibility's antigenic complex (MHC), is body internal specific The main component of Immune discrimination and immune response is to influence one of successful key factor of hematopoietic stem cell transplantation, reliable HLA Gene frequency especially high-resolution gene frequency data are the estimated important evidences for finding HLA matching donor possibilities, to HLA With it is disease associated research, population genetic study and medical jurisprudence research etc. also have important application value.At present Report in relation to Chinese population HLA between different regions are not agnate has very much, but majority is the low resolution gene with HLA Parting is to be studied not over the high-resolution gene loci of HLA according to progress follow-up study with serotype The method of a set of maturation.HLA is located at No. 6 chromosome of human body, and the high-resolution gene loci of HLA has 5:HLA-A、-B、-C、- DRB1 and DQB1, wherein HLA-DRB1 are the gene locis that polymorphism is most abundant in HLA-II genoids, determine that DR antigens are polymorphic Property.Therefore HLA-DRB1 gene pleiomorphisms are the important components of immunizing antigen polymorphism, may influence the hair of a variety of diseases It is raw.
HLA-DRB1 genes all have single-gene polymorphism, the diagnosis of this gene pleiomorphism for disease generation with it is pre- It is anti-to have important role.Existing gene diagnosis mainly uses traditional PCR sequencing PCR or genechip detection method, the inspection of this type The amount that survey method needs detection sample is larger, and detection time is long, complex steps, and the economy for considerably increasing measured is negative Load.Therefore, inventor has developed a HLA high-resolution gene loci DRB1's based on the research for many years to pyrosequencing Rapid amplifying diagnostic kit and amplification method.
Invention content
In view of the above-mentioned problems existing in the prior art, the purpose of the present invention is based on linearized index round pcr, obtain A kind of the rapid amplifying diagnostic kit and amplification method of HLA high-resolution gene loci.
One of for achieving the above object, the rapid amplifying diagnosis examination for the HLA high-resolution gene locis that the present invention uses The technical solution of agent box is as follows:
The amplification kit includes archaeal dna polymerase and amplimer, and HLA high-resolution gene locis are HLA-DRB1, It expands template sequence and is included in such as sequence table SEQ ID NO:In sequence shown in 1, amplimer expands for linearized index PCR Increase, amplimer upstream sequence such as sequence table SEQ ID NO:Shown in 2, downstream sequence such as sequence table SEQ ID NO:Shown in 3.
Sequencing primer specificity height in the present invention, accuracy are good, can accurately detect the SNP site of HLA-DRB1, Sequence can largely generate the single stranded DNA convenient for pyrosequencing for linearized index PCR (LATE-PCR), without to routine Double-stranded DNA carries out uncoiling and separation.
It is Excess primer to have one in primer sequence, and one is restricted primer, Excess primer and restricted primer with just To having no specific formulation relationship between primer and reverse primer, the fragment single-chain that can be expanded as needed selects to expand Amount, it is Excess primer that the corresponding amplimer of big chain is measured in amplification, and the corresponding amplimer of another chain is restricted primer.
When design primer, since linearized index PCR is for the more demanding of primer, it is desirable that the difference of the Tm values between primer >= 5 DEG C, difference≤13~18 DEG C of the Tm values between amplified production and Excess primer.It can ensure best extension effect in this way, but The temperature requirement is not absolute, as long as purpose product to be measured can be amplified by LATE-PCR, so that it may to use.
Preferably, such as sequence table SEQ ID NO in the present invention:Primer shown in 2 is Excess primer, such as sequence table SEQ ID NO:Primer shown in 3 is restricted primer.
The single-stranded progress that the specific choice of Excess primer and restricted primer can expand according to actual needs in the present invention It exchanges, that is to say, that such as sequence table SEQ ID NO:Primer shown in 2 is restricted primer, such as sequence table SEQ ID NO:3 institutes The primer shown is Excess primer.The dosage of primer can be adjusted with common sense in the field according to actual needs, and one more than dosage Primer is Excess primer, and a few primer of dosage is restricted primer, and protection scope of the present invention should not be by primer name Claim the limitation with usage amount.
It is furthermore preferred that Excess primer is index times with additive amount of the restricted primer in system, minimum is 10 times.
Preferably, amplifing reagent further includes amplification buffer, dNTPs and Mg2+
Amplified production in the present invention preferably uses pyrosequencing to carry out Sequence Detection, and Pyrosequencing primer is preferably such as Sequence table SEQ ID NO:Shown in 4.But pyrosequencing is not unique sequencing mode, and any can detect gene order The prior art can be used as detection method by the present invention use, therefore, pyrosequencing should not be used as be to the present invention Limitation.
Second object of the present invention is to provide a kind of amplification method using any of the above-described a kit, the expansion Increasing system uses 25 μ L systems, specially:
1×PCR buffer、3mmol/L MgCl2, 100 μm of ol/L dNTPs, 1.5U Taq DNA polymerases, 0.1 μ The restricted primer P of mol/LL, 1 μm of ol/L Excess primers PE, 13% glycerine and 4%BSA 2mmol/L;1 μ L DNA profilings, add water It is supplemented to 25 μ L.
Amplification condition is 95 DEG C of pre-degeneration 5min, 60 DEG C of amplification cycles, 72 DEG C of extension 10min, 4 DEG C of holdings, wherein every 87 DEG C 10s, 66 DEG C of 10s and 72 DEG C of 20s form an amplification cycles.
Pyrosequencing is preferably used after amplification, although the product after amplification is largely single-stranded, but still has subregion Still amplified production is made annealing treatment, is prepared as single-stranded mould in order to make pyrophosphoric acid detection according to accurately and quickly for double-strand Plate.
Preferably, two kinds of reagents are used when annealing:Reagent A is other pyrosequencings examination without Apyrase Agent, including DTT, APS, PVP, ATP sulfurylase, Klenow, fluorescein and luciferase, reagent B be reagent A with The mixed liquor of Apyrase.
Wherein, a kind of most preferred allocation plan of reagent A is:0.1mol/L Tris- acetic acid (pH 7.7), 2mmol/L EDTA, 10mmol/L magnesium acetate, 0.1%BSA, 1mmol/L dithiothreitol (DTT)s (DTT), 2 μm of ol/L APS, 0.4g/L PVP, 200U/L ATP sulfurylase, 18U/mL Klenow, 0.8mmol/L D- fluoresceins, 6mg/L luciferases.
Most preferably a kind of allocation plans of reagent B are:The mixed liquor of reagent A and 3.2U/mL Apyrase.
When annealing, 1~2 μ L LATE-PCR products and 1.2 μ L APS (1mmol/L) are taken, be added 30 μ L reagent As, after mixing 10~15min is placed, then 40 μ L reagent B mixings is added to place 3~5min, annealing primer is then added, and (final concentration reaches 0.3 μ Mol/L), 10~15min of annealing at room temperature.
The present invention is sequenced using the pyrosequencing instrument that our company voluntarily researches and develops, sequencing result and existing commercially available coke Phosphoric acid sequenator is compared, and not only result is more accurate, and the high sample dosage of precision is small, and detection appearance is accurate, is not necessarily to repeated authentication Experiment.
Due to the discovery of specific primer and the foundation of amplification system, the invention also discloses a kind of HLA-DQB1 genes The application of specific primer and amplification system in rapid amplifying diagnostic kit, the kit using linearized index PCR with The mode that pyrosequencing combines carries out amplification diagnosis to HLA-DQB1 genes.
Rapid amplifying diagnostic kit and amplification method in the present invention can be used for the clinic or medicine of HLA-DQB1 genes Neo-Confucianism diagnosis, diagnostic sample source is unlimited, and diagnostic result can be used as gene screening, disease susceptibility, medication guide etc. multi-party The diagnosis basis in face may be implemented pair using amplification kit, amplification method or other conventional amplification methods in the present invention The efficient amplification of HLA-DQB1 genes diagnoses, and has great importance for the research and clinical development of the gene.
Compared with prior art, the present invention uses the target fragment amplification method of linearized index amplification, the expansion of Precise spraying Increasing primer amplification is efficient and mispairing is few, not only considerably increases amplification efficiency, and directly amplify single stranded DNA and can be directly used for Pyrosequencing, without amplified production is marked and double-strand separation, avoid lengthy and tedious experimental procedure, decrease highly basic Damage of the property reagent to amplified fragments.Primer and experimental method in this kit are obtained by accurate design and test , it is suitable for the SNP site detection of the HLA-DRB1 of various samples, and detection efficiency is high, testing result is accurate.Directly use Amplification detection kit in the present invention and detection method, the operation of laboratory technician is required it is low, to detect environment tolerance it is strong, Augmentation detection work can be rapidly carried out at any time, and convenient and efficient, testing cost is low, as a result accurate and show that the time is short, can be with The economy and mental burden for farthest mitigating examinee, have good market potential value.
Description of the drawings
Fig. 1 is linearized index amplification product gel electrophoresis figure provided by the invention;
Fig. 2 is the gene sequencing figure of pyrosequencing provided by the invention.
Specific implementation mode
The rapid amplifying diagnostic kit to HLA high-resolution gene loci provided by the invention and expansion with reference to embodiment Increasing method work is further detailed, completely illustrates.The embodiments described below is exemplary, and is only used for explaining the present invention, and It is not considered as limiting the invention.
Experimental method in following embodiments is unless otherwise specified conventional method.Reality as used in the following examples It tests material unless otherwise specified, is that market is commercially available.
The instrument and reagent used in the present invention is as follows:
PTC-255PCR amplification instruments, MJ Research companies of the U.S.;
Pyrosequencing instrument, the Wuhan bio tech ltd Fei Site;
Taq DNA polymerase, dNTPs (10mmol/L), 10 × Buffer and MgCl2(25mmol/L) (Dalian TaKaRa is public Department);AmpliTaqGold polymerases (AppliedBiosystems companies);KlenowFragment (no 5 prime excision enzyme activity), second Vinyl pyrrolidone (PVP) and Luciferase (Promega companies), bovine serum albumin(BSA) (BSA), APS and Apyrase (Sigma companies), α-vulcanization deoxy adenosine triphosphate (dATP α S), dGTP, dTTP and dCTP (Amersham Pharmacia Biotech companies);ATPsulfurylase is expressed by our company laboratory;Other reagents are that analysis is pure, and all reagents are used Sterile deionized water dilutes.Primer is synthesized by Shanghai Invitrogen companies in kit, specific Primer and sequence see Sequence table.
Rapid amplifying diagnostic kit in the present invention includes:Primer amplification group and pyrosequencing group, wherein primer expand Increasing group includes amplimer, archaeal dna polymerase, amplification buffer, dNTPs and Mg2+, pyrosequencing group includes annealing primer, DNA Polymerase (AmpliTaqGold polymerases), ATP sulfurylases (ATPsulfurylase), luciferase (Luciferase), Apyrase (Apyrase) and dNTP, and configure the Klenow enzymes (KlenowFragment) of reaction solution.
It is furnished with complete operating method in kit, such as sample to be amplified is untreated whole blood sample, need to use and use In the buffer solution of whole blood sample PCR, wherein containing 100mmol/L Tris-HCl, 50mmol/L KCl, pH 9.3~9.5.
One, amplimer designs
The SNP segments of HLA-DRB1 are expanded using linearized index PCR in the present invention, are amplified enough single-stranded DNA profiling is to carry out pyrosequencing.According to the record to the SNP site of HLA-DRB1 in NCBI, No. rs of HLA-DRB1 is 701831, the long 1101bp of sequence, SNP site are located at the 501st, and A/T/G/C is likely to occur mispairing, specific sequence when mispairing occurs Row such as sequence table SEQ ID NO:Shown in 1, N indicates the SNP site of HLA-DRB1, SEQ ID NO:Lower stroke specific as follows of 1 sequence Line part is specific primer coupling part:
TTACTACACTCTGTACTTTCCAAGATTTGTAAACAGTTTGACAATGCATGCCGATTTAAA
ACTATGAAGAAACAAACACAATTTTTCACAACACCTCTCAAATCTAATGGGTCCTCACTG
TCAAGATTAAATTCCAGGCTGATGACACTGTAAGGTCACATGGCCAGCTGTGCTATAGGC
CTGGTCAAGGCCAGAGCCTGGGTTTGCAGAGAAGCAGACACACAGCCAAACCAGGAGACT
TACTCTGTCTTCCTGACTCATTCCCTCTACGTTGTTTTTCTCCTAGTCCAACCTAAGGTG
ACTGTATATCCTTCAAAGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGCTCTGTG
AGTGGTTTCTATCCAGGCAGCATTGAAGTCAGGTGGTTCCTGAACGGCCAGGAAGAGAAG
GCTGGGATGGTGTCCACAGGCCTGATCCAGAATGGAGACTGGACCTTCCAGACCCTGGTG
ATGCTGGAAACAGTTCCTCG
N
AGTGGAGAGGTTTACACCTGCCAAGTGGAGCACCCAAGCGTGACAAGCCCTCTCACAGTG
GAATGGAGTGAGCAGCTTTCTGACTTCCTAAATTTCTCACCCACTAAGAAGGGGACCGTG
CTAATCCCTGAGTGTCAGGTTCCTCCTCTCCCACATCCTATTTTAATTTGCTCCATGTTC
TCATCTCCATCAGCACAGGTCACTGGGGGTAGCCCTGTAGGTGTTTCTAGAAACACCTGT
ACCTCCTGGAGAAGCAGTCTCGCCTGCCAGGCGGGAGAGACTGTCCCTCTTTTGAACCTC
CCCATGATTTTGCAGGTCAGGGTCACCCACTCTCCCAGGCTCCAGGCCCTGCCTCTGGGT
CTGAGACTGAGTTTCTGGTGCTGTTGCTCTGAGTTATTTTTTGTGATCTGGGAAGAGGAG
AAGTGTAGGGGCCTACCTGACATGAGGGGAGTCCAATCTCAGCCCTGCTTTTTATTAGCT
TTGTCACTCTAGACAAACTA
According to said gene sequence, it was using the amplification of 5 Software for Design of Primer Primer and annealing primer, wherein E Measure primer, Excess primer sequence such as sequence table SEQ ID NO:Shown in 2, L is restricted primer, restricted primer sequence such as sequence Table SEQ ID NO:Shown in 3, A is amplified production.TmThe calculating of value is calculated using 3.1 softwares of Oligo Analyzer.Primer sequence Row and parameter are as shown in table 1 below:
Table 1
Two, linearized index PCR amplification
1. sampling
100 human blood samples are chosen in this embodiment originally to be tested, samples sources in Wuhan downtown blood station, sample into Row pretreatment is DNA profiling, and the immunoglobulin G in blood, hemoglobin and lactoferrin is avoided to do PCR reaction systems It disturbs.
2. linearized index expands
The reaction system of linearized index amplification is 25 μ L systems, and specific ingredient is as follows in system:
1×PCR buffer(50mmol KCl、15mmol Tris-HCl、pH 8.0)、3mmol/L MgCl2、100μ Mol/L dNTPs, 1.5U Taq DNA polymerases, the restricted primer P of 0.1 μm of ol/LL, 1 μm of ol/L Excess primers PE, 13% glycerine With 4%BSA 2mmol/L;1 μ L DNA profilings, add water to be supplemented to 25 μ L.
Amplification condition is:95 DEG C of 5min, 60 DEG C of amplification cycles (87 DEG C of 10s, 66 DEG C of 10s, 72 DEG C of 20s), 72 DEG C of 10min, 4 DEG C keep.
Three, pyrosequencing
3.1 design of primers
Annealing primer, annealing primer sequence such as sequence table SEQ ID NO are designed according to amplified production:Shown in 4:5'- GCCAAGTGGAGCACCCAAGCGT-3'。
The preparation of 3.2 reaction solutions
Reagent A:0.1mol/L Tris- acetic acid (pH 7.7), 2mmol/L EDTA, 10mmol/L magnesium acetates, 0.1% BSA, 1mmol/L dithiothreitol (DTT) (DTT), 2 μm of ol/L APS, 0.4g/L PVP, 200U/L ATPsulfurylase, 18U/ ML Klenow, 0.8mmol/L D- fluoresceins, 6mg/L luciferases;
Reagent B:Reagent A, 3.2U/mL Apyrase.
The preparation of 3.3 single-stranded templates
1~2 μ L LATE-PCR products and 1.2 μ L APS (1mmol/L) are taken, 30 μ L reagent As are added, 10 are placed after mixing ~15min, then 40 μ L reagent B mixings is added to place 3~5min, annealing primer (final concentration reaches 0.3 μm of ol/L), room is then added 10~15min of temperature annealing.
3.4 pyrosequencing
Reaction solution in 3.3 steps is all transferred in pyrosequencing reaction tank, according to designed primer sequence DNTP is added, the pyrosequencing instrument that declaration is produced using our company is sequenced, dNTP addition sequences and testing result such as Fig. 2 Shown, wherein Fig. 2 show the pyrosequencing figure of HLA-DRB1.
3.5 statistical result
It is for statistical analysis according to the testing result to 20 samples in the present embodiment, the distribution of HLA-DRB1 genotype frequencies Situation is as shown in table 2 below:
Table 2HLA-DRB1 genotype frequency distribution statistics tables
Detection sample in the present embodiment is smaller, and the site of HLA-DRB1 is more in addition and has the spy of Regional Distribution unevenness Point, therefore this testing result does not represent the overall distribution situation of the genotype, only indicates the statistical result of this embodiment detection.
Four, testing result is verified
4.1 agarose gel electrophoresis
2% agarose gel electrophoresis detection, electrophoresis result figure such as Fig. 1 will be carried out by the amplified production of linearized index amplification Shown, non-label band is DNA Marker in figure, and 1~5 is the amplified production randomly selected, and 6 be negative control.In figure The target fragment size of purpose band position display amplification is correct.
It is it is necessary to described herein finally:Above example is served only for making technical scheme of the present invention further detailed Ground illustrates, should not be understood as limiting the scope of the invention, those skilled in the art's the above according to the present invention Some the nonessential modifications and adaptations made all belong to the scope of protection of the present invention.
Sequence table
<110>New increase income is won freely(Wuhan)Bio tech ltd
<120>A kind of the rapid amplifying diagnostic kit and amplification method of HLA high-resolution gene loci
<130> 2017
<160> 4
<170> SIPOSequenceListing 1.0
<210> 1
<211> 1001
<212> DNA
<213> Homo sapiens
<220>
<221> gene
<222> (1)..(1001)
<223>HLA-DRB1 gene orders
<220>
<221> misc_feature
<222> (501)..(501)
<223> n is a, c, g, t or u
<400> 1
ttactacact ctgtactttc caagatttgt aaacagtttg acaatgcatg ccgatttaaa 60
actatgaaga aacaaacaca atttttcaca acacctctca aatctaatgg gtcctcactg 120
tcaagattaa attccaggct gatgacactg taaggtcaca tggccagctg tgctataggc 180
ctggtcaagg ccagagcctg ggtttgcaga gaagcagaca cacagccaaa ccaggagact 240
tactctgtct tcctgactca ttccctctac gttgtttttc tcctagtcca acctaaggtg 300
actgtatatc cttcaaagac ccagcccctg cagcaccaca acctcctggt ctgctctgtg 360
agtggtttct atccaggcag cattgaagtc aggtggttcc tgaacggcca ggaagagaag 420
gctgggatgg tgtccacagg cctgatccag aatggagact ggaccttcca gaccctggtg 480
atgctggaaa cagttcctcg nagtggagag gtttacacct gccaagtgga gcacccaagc 540
gtgacaagcc ctctcacagt ggaatggagt gagcagcttt ctgacttcct aaatttctca 600
cccactaaga aggggaccgt gctaatccct gagtgtcagg ttcctcctct cccacatcct 660
attttaattt gctccatgtt ctcatctcca tcagcacagg tcactggggg tagccctgta 720
ggtgtttcta gaaacacctg tacctcctgg agaagcagtc tcgcctgcca ggcgggagag 780
actgtccctc ttttgaacct ccccatgatt ttgcaggtca gggtcaccca ctctcccagg 840
ctccaggccc tgcctctggg tctgagactg agtttctggt gctgttgctc tgagttattt 900
tttgtgatct gggaagagga gaagtgtagg ggcctacctg acatgagggg agtccaatct 960
cagccctgct ttttattagc tttgtcactc tagacaaact a 1001
<210> 2
<211> 22
<212> DNA
<213> Artificial Sequence
<220>
<221> misc_feature
<222> (1)..(22)
<223>HLA-DRB1 gene Excess primer sequences
<400> 2
gagtggtttc tatccaggca gc 22
<210> 3
<211> 22
<212> DNA
<213> Artificial Sequence
<220>
<221> misc_feature
<222> (1)..(22)
<223>The restricted primer sequence of HLA-DRB1 genes
<400> 3
tgagagggct tgtcacgctt gg 22
<210> 4
<211> 22
<212> DNA
<213> Artificial Sequence
<220>
<221> misc_feature
<222> (1)..(22)
<223>HLA-DRB1 gene annealing primers
<400> 4
gccaagtgga gcacccaagc gt 22

Claims (10)

1. a kind of rapid amplifying diagnostic kit of HLA high-resolution gene loci, which is characterized in that the amplification kit includes Archaeal dna polymerase and amplimer, HLA high-resolution gene locis are HLA-DRB1, and amplification template sequence is included in such as sequence table SEQ ID NO:In sequence shown in 1, amplimer is used for linearized index PCR amplification, such as sequence table of amplimer upstream sequence SEQ ID NO:Shown in 2, downstream sequence such as sequence table SEQ ID NO:Shown in 3.
2. the rapid amplifying diagnostic kit of HLA high-resolution gene loci according to claim 1, which is characterized in that institute It is Excess primer to state in amplimer one, another is restricted primer.
3. the rapid amplifying diagnostic kit of HLA high-resolution gene loci according to claim 1, it is characterised in that:Institute The quantity for stating Excess primer is at least 10 times of restricted primer.
4. the rapid amplifying diagnostic kit of HLA high-resolution gene loci according to claim 1, it is characterised in that:Institute Stating kit further includes:Amplification buffer, dNTPs and Mg2+
5. the rapid amplifying diagnostic kit of HLA high-resolution gene loci according to claim 1, it is characterised in that:Institute It states and obtains gene order through pyrosequencing after amplimer is annealed.
6. the rapid amplifying diagnostic kit of HLA high-resolution gene loci according to claim 5, it is characterised in that:It is burnt The primer sequence such as sequence table SEQ ID NO of phosphoric acid sequencing:Shown in 4.
7. a kind of amplification method using according to claim 1~6 any one of them HLA high-resolution gene locis, feature It is, the amplification system of the amplification method is:1×PCR buffer、3mmol/L MgCl2、100μmol/L dNTPs、 1.5U Taq DNA polymerases, the restricted primers of 0.1 μm of ol/L, 1 μm of ol/L Excess primer, 13% glycerine and 4%BSA 2mmol/ L;1 μ L DNA profilings, add water to be supplemented to 25 μ L.
8. the amplification method of HLA high-resolution gene loci according to claim 7, it is characterised in that:The amplification condition For:95 DEG C of pre-degeneration 5min, 60 DEG C of amplification cycles, 72 DEG C of extension 10min, 4 DEG C of holdings.
9. the amplification method of HLA high-resolution gene loci according to claim 7, it is characterised in that:60 DEG C of amplifications Cycle forms a cycle by 87 DEG C of 10s, 66 DEG C of 10s and 72 DEG C of 20s.
10. the application of a kind of specific primer and amplification system of HLA-DQB1 genes in rapid amplifying diagnostic kit, It is characterized in that:The kit expands HLA-DQB1 genes in such a way that linearized index PCR is combined with pyrosequencing Increase diagnosis.
CN201810037261.9A 2018-01-15 2018-01-15 A kind of the rapid amplifying diagnostic kit and amplification method of HLA high-resolution gene loci Pending CN108570495A (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN201810037261.9A CN108570495A (en) 2018-01-15 2018-01-15 A kind of the rapid amplifying diagnostic kit and amplification method of HLA high-resolution gene loci

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN201810037261.9A CN108570495A (en) 2018-01-15 2018-01-15 A kind of the rapid amplifying diagnostic kit and amplification method of HLA high-resolution gene loci

Publications (1)

Publication Number Publication Date
CN108570495A true CN108570495A (en) 2018-09-25

Family

ID=63575902

Family Applications (1)

Application Number Title Priority Date Filing Date
CN201810037261.9A Pending CN108570495A (en) 2018-01-15 2018-01-15 A kind of the rapid amplifying diagnostic kit and amplification method of HLA high-resolution gene loci

Country Status (1)

Country Link
CN (1) CN108570495A (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN111235266A (en) * 2020-03-10 2020-06-05 广州医科大学附属第二医院 HLA subtype detection kit and application thereof

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101076607A (en) * 2004-10-18 2007-11-21 布兰迪斯大学 Primers, probes and methods for nucleic acid amplification
CN105377283A (en) * 2013-02-06 2016-03-02 布兰迪斯大学 Treatment of dna damage and mitochondrial dysfunction using palm fruit juice

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101076607A (en) * 2004-10-18 2007-11-21 布兰迪斯大学 Primers, probes and methods for nucleic acid amplification
CN105377283A (en) * 2013-02-06 2016-03-02 布兰迪斯大学 Treatment of dna damage and mitochondrial dysfunction using palm fruit juice

Non-Patent Citations (5)

* Cited by examiner, † Cited by third party
Title
李凡等: "不对称PCR技术及其在食源性致病菌检测中应用的研究进展", 《食品工业科技》 *
杨会勇等: "利用线性指数PCR-焦磷酸测序技术快速检测3种海洋弧菌", 《中国药科大学学报》 *
陶然等: "6号染色体短臂MHCⅡ类抗原区基因多态性与精神***症的关系", 《疾病控制杂志》 *
饶华春等: "Tm值差异型不对称PCR方法的建立及其在分子诊断中的应用", 《厦门大学学报(自然科学版)》 *
魏召新等: "不对称PCR的引物浓度优化及在柑橘基因型分析上的应用", 《江苏农业科学》 *

Cited By (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN111235266A (en) * 2020-03-10 2020-06-05 广州医科大学附属第二医院 HLA subtype detection kit and application thereof
CN111235266B (en) * 2020-03-10 2023-12-01 广州医科大学附属第二医院 HLA subtype detection kit and application thereof

Similar Documents

Publication Publication Date Title
WO2020243978A1 (en) Primer for specific detection of human source genomic dna and application thereof
CA2525122A1 (en) Identification of clonal cells by repeats in t-cell receptor and immunoglobulin v/d/j genes
CN106480198B (en) A kind of method and system carrying out individual identification to unknown sample
CN108411008A (en) The application of 72 SNP sites and relevant primer in identifying or assisting identification human groups
Phansalkar et al. Coronary blood vessels from distinct origins converge to equivalent states during mouse and human development
CN103805701A (en) Detection method and kit of HLA (Human Leukocyte Antigen)-B*58:01 allele
CN103074452A (en) Kit for synchronously detecting fifteen hemorrhagic fever pathogens and detection method of kit
CN103993089B (en) A kind of multiple fluorescence quantitative PCR detection kit and detection method thereof of vancomycin-resistant enterococcus
AU2016229162A1 (en) Method for measuring a change in an individual&#39;s immunorepertoire
CN108570495A (en) A kind of the rapid amplifying diagnostic kit and amplification method of HLA high-resolution gene loci
CN107937524A (en) Mankind&#39;s KRAS gene mutation detection kit and detection method
CN101671736B (en) Gene detection kit used for detecting cell chimerism or individual recognition
CN105925691A (en) Kit for rapidly detecting the numbers of human No.13, No.18, No.21, X and Y chromosomes
CN103173538B (en) Kit for detecting HLA-B*1301 gene
JP2013236627A (en) Analysis methods for y chromosome and deletion site of sperm forming area on y chromosome
CN107988370A (en) A kind of application of circRNA genes in diagnosing chronic granulocytic leukemia reagent is prepared
Sun et al. The existence and role of microchimerism after microtransplantion
CN109486929A (en) A kind of the rapid amplifying detection kit and detection method of the SNP site of ALDH2
CN108866216A (en) It is a kind of for identifying the primer combination of probe of mycobacterium abscessus and Marseille mycobacteria
CN108624660A (en) A kind of quick detection kit and detection method of Hcy key enzymes
CN101760518A (en) Method for extracting live bacteria RNA in Mycobacterium tuberculosis and detection kit thereof
Naik et al. Viability of human dental pulp in determination of sex of an individual by identifying srygene through DNA analysis: A single blind pilot study
CN103923981B (en) HLA-B*27 Allele Detection Method and kit thereof
CN111440876A (en) Kit and method for quantitatively detecting methylation degree of human MGMT gene
ES2257139B1 (en) METHOD AND KIT FOR GENOTIPIFICATION OF HLA-DRB BASED ON REAL-TIME PCR.

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination
RJ01 Rejection of invention patent application after publication
RJ01 Rejection of invention patent application after publication

Application publication date: 20180925