The synthesis of embodiment 2 base acetamide glycerin ether ester molecule DNTA and DNCA
(1) synthesis of oleyl alcohol sulfonyloxy methyl ester
By oleyl alcohol (50g, 85%purity, 158mmol), Et3N (40mL, 286mmol) is added to the round-bottomed flask of 1L
In, DCM (500mL) is added, is placed on ice bath and is sufficiently stirred, temperature is made to be reduced to 0 DEG C.It is slowly added into first thereto by syringe
Sulfonic acid chloride (16mL, 206mmol), solution becomes cloudy.Ice bath is removed later, reaction solution is made slowly to return back to room temperature, continues to stir
12h.Water (250mL) is added to quench the reaction, organic phase is then detached by separatory funnel.Water phase is anti-with DCM (250mL × 2)
Extraction, is then combined with organic phase.Organic phase after merging uses 1N hydrochloric acid (250mL), 10%NaHCO successively3Aqueous solution (250mL) and
Saturated salt solution (250mL) washs, anhydrous Na2SO4It is dry.Organic phase evaporated under reduced pressure, residue are detached by silica gel column chromatography
(eluant, eluent:Petrol ether/ethyl acetate=20/1, Rf=0.3) pale yellowish oil liquid 44.3g, yield 81%, are obtained.1H
NMR(400MHz,CDCl3):δ=5.30-5.43 (m, 2H), 4.22 (t, J=6.6Hz, 2H), 3.00 (s, 3H), 1.90-2.10
(m, 4H), 1.70-1.80 (m, 2H), 1.20-1.40 (m, 22H), 0.88 (t, J=6.8Hz, 3H);13C NMR(100MHz,
CDCl3):δ=130.2,129.9,70.3,37.5,32.0,29.90,29.83,29.66,29.46,29.29,29.26,
29.15,27.36,27.30,25.6,22.8,14.3;IR (neat) ν=2925.5,2854.5,1463.6,1355.9,
1175.4,974.8,947.8,831.7,721.6,528.8;MS(ESI-TOF+)for C19H38O3SNa[M+Na]+
found369.2315,calcd369.2434;Anal.calcdfor C19H38O3S:C 65.85,H 11.05,Found:C
65.63,H 10.98.
(2) synthesis of 1- triphenylmethoxies glyceryl alcohol
Glycerine (40g, 435mmol), triphenylchloromethane (30g, 107mmol), DMAP (300mg, 2.46mmol) are set
In dry 500mL round-bottomed flasks, THF (80mL) and Et is added3N (18mL), is stirred at room temperature 12h.It is added into reaction solution
Water (100mL) to quench the reaction, is then added ethyl acetate (150mL) and dilutes.After fully shaking, mixed liquor is transferred to liquid separation
In funnel, organic phase is detached.Water phase is extracted with ethyl acetate (100mL × 2), is then combined with organic phase.Organic phase after merging
Successively with saturation NaHCO3Aqueous solution (200mL), water (200mL) and saturated salt solution (200mL) washing, anhydrous Na2SO4It is dry.
After filtering, solvent evaporated obtains yellow oil.It is dissolved into toluene/n-hexane (200mL, v/v=1/1), at room temperature
It places for 24 hours, crystallizes out white solid 29g, yield 85%.1H NMR(400MHz,CDCl3):δ=7.38-7.48 (m, 6H),
7.20-7.35(m,9H),3.84(s,1H),3.63-3.71(m,1H),3.53-3.63(m,1H),3.20-3.28(m,2H),
2.74(brs,1H),2.35(brs,1H);13C NMR(100MHz,CDCl3):δ=1438,1287,1280,127
3,871,713,651,644;IR (film, KBr)=33808,30581,2920.0,2866.8,1490.0,
1447.8,1081.5,1028.5,699.8;MS(EI)for C22H22O3[M]+found 334.5,calcd 334.2;
Anal.calcd for C22H22O3:C 79.02,H 6.63,Found:C 79.26,H 6.49.
(3) synthesis of two oleyl alcohol ethers of 1- trityl groups -2,3--glycerine
By 1- triphenylmethoxies-glycerine -2,3- glycol (8g, 23.1mmol), KOH (3.3g, 58.9mmol) and oleyl alcohol
It is dissolved in dry benzene (150mL) solution after being mixed to sulfonyloxy methyl ester (19.2g, 55.42mmol), equips water knockout drum, heating
To 80 DEG C, flow back 32 hours.Ethyl acetate 100mL and water 150mL is added thereto later, extraction detaches organic phase.Water phase is used
Ethyl acetate (150mL × 3) extracts, and merges organic phase, anhydrous Na2SO4It is dry, decompression silica gel column chromatography separation after solvent evaporated,
Obtain target product 6.1g, yield 31%.Separately obtain 1- triphenylmethoxy -3- oleyl alcohol ether-glycerine -2- alcohol 3.7g, yield
It is 27%.Target product is weak yellow liquid.1H NMR(400MHz,CDCl3):δ=7.40-7.50 (m, 6H), 7.18-7.32
(m,9H),5.26-5.43(m,4H),3.50-3.60(m,5H),3.35-3.45(m,2H),3.12-3.20(m,2H),1.92-
2.08 (m, 8H), 1.50-1.58 (m, 4H), 1.26 (brs, 44H), 0.88 (t, J=6.6Hz, 6H);13C NMR(100MHz,
CDCl3):δ=144.31,130.07,130.00,128.90,127.85,127.02,86.64,78.45,71 .76,71.33,
70.84,63.73,32.77,32.06,30.28,29.94,29.93,29.85,29.82,29.72,29.68,29.65,
29.47,27.37,27.06,26.31,26.25,22.84,14.27;IR (film, KBr) ν=3004.4,2925.3,
2854.1,1742.6,1597.7,1490.7,1450.0,1220.6,1118.7,763.9,745.0,704.1,632.8cm-1;
MS(ESI-TOF+)for C58H90O3Na[M+Na]+found 857.9059,calcd 857.6782;Anal.calcd for
C58H90O3:C 83.39,H 10.86,Found:C 83.10,H 10.62.
(4) synthesis of bis- oleyl alcohol ethers of 1,2--glycerine -3- alcohol
Two oleyl alcohol ethers of 1- trityl groups -2,3--glycerine (8.34g, 10mmol) is taken to be suspended in methanol-tetrahydrofuran
In (100mL, v/v=1/1) mixed solution, concentrated hydrochloric acid (2mL, 12M) is added, stirs 2h at room temperature.TLC detections have found raw material
Through reacting completely.Ethyl acetate (50mL) and water (100mL) are added into residue for evaporated under reduced pressure solvent, and being detached after extraction has
Machine phase.Water phase is extracted with ethyl acetate (3 × 100mL), merges organic phase, anhydrous Na2SO4It is dry.It is filtered to remove drier, is subtracted
Solvent evaporated, silica gel column chromatography is pressed to detach (eluant, eluent:Petrol ether/ethyl acetate=20/1, Rf=0.2) target product, is obtained
3.7g, yield 62%.Pale yellowish oil liquid.1H NMR(400MHz,CDCl3):δ=5.30-5.45 (m, 4H), 3.40-3.75
(m,9H),2.18(s,1H),1.90-2.10(m,8H),1.55-1.65(m,4H),1.25-1.40(brs,44H),0.88(t,J
=6.4Hz, 6H);13C NMR(100MHz,CDCl3):δ=130.10,129.97,78.39,72.00,71.07,70.54,
63.27,32.06,30.23,29.92,29.85,29.81,29.77,29.67,29.65,29.60,29.47,29.41,
27.36,26.25,22.83,14.25;IR (film, KBr) ν=3470.1,3004.4,2925.4,2854.0,1651.2,
1463.2,1376.2,1117.5,1041.3,968.0,721.9cm-1;MS(ESI-TOF+)for C39H76O3Na[M+Na]+
found 615.7213,calcd 615.5687;Anal.calcd for C39H76O3:C 78.99,H 12.92,Found:C
78.72,H 12.68.
(5) bis- oleyl alcohol ether -3- glyceryl alcohol methanesulfonates of 1,2-
Take triethylamine (0.54mL, 3.91mmol), 1,2-, bis- oleyl alcohol ethers-glycerine -3- alcohol (1.932g, 3.26mmol) in
In 25mL single port bottles, dry dichloromethane (5ml) is added, magnetic agitation makes it dissolve, and ice-water bath makes reaction system be cooled to 0
DEG C, mesyl chloride (0.3mL, 3.91mmol) is added dropwise, 0 DEG C the reaction was continued 2 hours.Reaction system is added to saturation
NaHCO3In (50mL) solution, organic phase, water phase CH are detached2Cl2(2 × 50mL) is extracted, and merges organic phase, anhydrous Na2SO4It is dry
It is dry overnight.It is filtered to remove drier, evaporated under reduced pressure solvent, residue detaches (eluant, eluent with silica gel column chromatography:Petroleum ether/methanol
=120/1) target product 2.02mg (yield 92.6%), is obtained.1H NMR(400MHz,CDCl3)δ5.37(s,4H),4.40
(d, J=10.9Hz, 1H), 4.27 (d, J=10.7,5.8Hz, 1H), 3.54 (d, J=29.7,27.4,20.6Hz, 8H), 3.06
(s, 3H), 2.03 (d, J=5.2Hz, 7H), 1.58 (s, 4H), 1.29 (d, J=10.6Hz, 44H), 0.90 (t, J=6.1Hz,
6H).13C NMR(101MHz,CDCl3)δ127.93,127.27,77.34,77.22,77.02,76.70,76.38,71.90,
70.83,69.08,37.40,32.62,31.92,29.95,29.78,29.71,29.59,29.54,29.52,29.33,
29.28,27.23,26.08,26.02,22.70,14.13.MS(EI)for C40H78O5S[M+Na]+found 693.36,
calcd 693.55;
(6) bis- oleyl alcohol ethers of 1,2--glycerine -3- nitrine
Dry compound 1 is taken, bis- oleyl alcohol ethers of 2--glycerine -3- methanesulfonates (970mg, 1.44mmol) is in 25mL single port
In bottle, dry DMF (8mL) solution is added, magnetic agitation makes it dissolve, and NaN is added3(188mg, 2.88mmol) argon gas is protected
Shield, reaction are warming up to 70 DEG C and react 15 hours.Reaction solution is cooled to room temperature, acetone (30mL) is added and dilutes, reaction solution silicon
Diatomaceous earth filters, and filtrate decompression is evaporated, and residue detaches (eluant, eluent with silica gel column chromatography:Petrol ether/ethyl acetate=200/1),
Obtain colorless oil target product 345.5mg (yield 56%).1H NMR(400MHz,CDCl3)δ5.37(s,4H),3.60–
3.36 (m, 9H), 2.31 (s, 1H), 2.07-1.95 (m, 8H), 1.59 (d, J=8.3Hz, 4H), 1.30 (d, J=10.8Hz,
44H),0.90(s,6H).13C NMR(101MHz,CDCl3) δ 129.89 (d, J=10.6Hz), 77.90 (s), 77.45-76.95
(m),76.95–76.86(m),76.70(s),71.79(s),70.66(s),70.11(s),52.08(s),32.62(s),
31.92 (s), 30.38-29.54 (m), 29.37 (t, J=11.7Hz), 27.22 (s), and 26.07 (d, J=7.5Hz), 22.70
(s),14.13(s).MS(EI)for C39H75N3O2[M+Na]+found 640.49,calcd 640.58.
(7) bis- oleyl alcohol ethers of 1,2--glycerine -3- amine
1,2-, bis- oleyl alcohol ethers-glycerine -3- nitrine (309mg, 0.5mmol) is added in dry THF (10ml), magnetic force
It stirs to dissolve, solution is cooled to 0 DEG C, LiAlH is added4(95mg, 2.5mmol) argon gas is protected, will be molten after reaction 45min
Liquid is warming up to room temperature, the reaction was continued 2.5h, and saturation Na is added2SO4Reaction, reaction solution diatomite mistake is quenched in (0.7mL) solution
Filter, filtrate decompression are evaporated, residue silicagel column column chromatography for separation (eluant, eluent:Methylene chloride/methanol=50/1), obtain target production
Object 233.5mg (yield 79%).Pale yellow oil.
1H NMR(400MHz,CDCl3):δ=5.30-5.45 (m, 4H), 3.40-3.75 (m, 9H), 2.18 (s, 1H),
1.90-2.10 (m, 8H), 1.55-1.65 (m, 4H), 1.25-1.40 (brs, 44H), 0.88 (t, J=6.4Hz, 6H);13C NMR
(100MHz,CDCl3):δ=130.10,129.97,78.39,72.00,71.07,70.54,63.27,32.06,30.23,
29.92,29.85,29.81,29.77,29.67,29.65,29.60,29.47,29.41,27.36,26.25,22.83,
14.25;MS(ESI-TOF+)for C39H77NO2[M-H]-found 590.75,calcd 591.60;
(8) synthesis of (thymidine -1- bases)-acetic acid
Thymidine (10.0g, 79.3mmol) is suspended in H2O (150mL), be added thereto KOH aqueous solutions (50mL,
3.6M).After 10min is stirred at room temperature in the mixture, solution gradually becomes clarification.Then thereto be added monoxone (15.0g,
159mmol), reaction solution is heated to reflux 90min.After reaction solution is cooled to room temperature, it is acidified to pH=3 with concentrated hydrochloric acid, then at 4 DEG C
Under stand overnight, be precipitated white crystalline precipitate.The white crystalline precipitate, P is obtained by filtration2O5Vacuum drying, obtains target product
4.5g (yield 31%).1H NMR(400MHz,DMSO-d6):δ=13.11 (s, 1H), 11.34 (s, 1H), 7.50 (s, 1H),
4.37(s,2H),1.75(s,3H);13C NMR(100MHz,DMSO-d6):δ=169.6,164.4,151.0,141.8,
108.4,48.4,11.9;IR (film, KBr) ν=3180.2,3076.2,3027.0,2962.3,2835.8,1737.7,
1708.4,1664.8,1631.9,1418.3,1356.3,1201.7,1147.0,829.8,566.9cm-1;MS(EI):m/z
(%):184.1(39)[M+],95.9(100);Anal.Calcd for C7H8N2O4:C 45.66,H 4.38,N 15.21,
Found:C 45.59,H 4.40,N 15.25.
(9) synthesis of (thymidine -1- bases)-acetyl-(n-hydroxysuccinimide) -ester
(thymidine -1- bases)-acetic acid (3g, 16.3mmol) and dry DMF are added into dry 25mL eggplant-shape bottles
(30mL), stirring makes it completely dissolved.Then n-hydroxysuccinimide (2.38g, 21mmol) and N, N '-two are added thereto
Carbodicyclo hexylimide (DCC, 3.36g, 16.3mmol).It is stirred overnight at room temperature, a large amount of white precipitates is precipitated.It is heavy to be filtered to remove
It forms sediment, then filtrate decompression distillation redissolves residue in DMF (5mL).Anhydrous ether (30mL) is added thereto, is precipitated white
Color solid.The solid is obtained by filtration, is dried in vacuo, obtains target product 4.6g (yield 61%).White solid.1H NMR
(400MHz,DMSO-d6):δ=11.52 (s, 1H), 7.63 (s, 1H), 4.96 (s, 2H), 2.83 (brs, 4H), 1.77 (s,
3H);13C NMR(100MHz,DMSO-d6):δ=169.8,165.0,164.2,150.7,140.8,109.3,46.4,25.5,
11.9;IR (film, KBr) ν=3154.4,3003.4,2830.5,1827.4,1785.4,1739.8,1697.2,1467.8,
1422.8,1382.8,1358.6,1213.7,1106.8,1065.1,793.9,651.3cm-1;MS(ESI-TOF+)for
C11H11N3O6Na[M+Na]+found 304.0489,calcd 304.0540;Anal.Calcd for C11H11N3O6:C
46.98,H 3.94,N 14.94,Found:C 46.75,H 3.96,N 14.95.
(10) 1,2, the synthesis of-two (oleyl)-glycerine -3- amine-(thymidine -1- bases)-acetonyl ester (DNTA)
The synthetic route of DNTA is as shown in Figure 1.
By (thymidine -1- bases)-acetyl-(n-hydroxysuccinimide) -ester (280mg, 1.0mmol), 1,2,-two
(oleyl)-glycerine -3- amine (709mg, 1.2mmol), DMPA (14.6mg, 0.1mmol), pyridine (0.4mL) and anhydrous DMF
(20mL) is mixed, and argon gas protection is stirred overnight at room temperature.Ethyl acetate (200mL) is added thereto to dilute, is transferred to separatory funnel
In, dilute hydrochloric acid (0.1M), saturation NaHCO are used successively3Aqueous solution, water, saturated salt solution rinse, and organic phase is dry with anhydrous sodium sulfate
It is dry.It is filtered to remove drier, filtrate decompression is evaporated, and residue detaches (eluant, eluent with silica gel column chromatography:Methylene chloride/methanol=
50/1) target product 537.5mg (yield 71%), is obtained.Pale yellow oil.1H NMR(400MHz,CDCl3) δ=8.12
(s, 1H), 7.09 (s, 1H), 6.43 (s, 1H), 5.38 (d, J=18.8Hz, 4H), 4.31 (s, 2H), 3.58 (s, 1H), 3.52-
3.42 (m, 6H), 2.05-1.94 (m, 10H), 1.60 (s, 4H), 1.29 (d, J=11.7Hz, 45H), 0.89 (d, J=6.7Hz,
6H).(ESI-MS)for C46H83N3O5[M-H]-found756.61,calcd.757.23.13C NMR(100MHz,CDCl3):δ
=167.54,163.69,150.61,140.18,130.13,129.98,111.38,76.35,7 2.03,70.89,69.97,
65.77,48.60,32.06,29.93,29.78,29.67,29.61,29.48,27.37,26.19,14.25,12.45;(ESI-
MS)for C46H83N3O5[M-H]-found 756.61,calcd.757.23.
(11) synthesis of (4-N- (hexichol methoxycarbonyl group)-cytimidine) -1- acetic acid
Cytimidine (10.3g, 90mmol, 1.0eq) is taken to be dissolved in DMF (90mL), addition potassium tert-butoxide (11.6g,
103.5mmol, 1.15eq), reaction system is heated to 100 DEG C later and is reacted 2 hours.Reaction system is cooled to 10 DEG C, point
2- benzyl acetate bromides (16.05mL, 101mmol, 1.12eq) are added dropwise dropwise within 30 minutes, are warming up to reaction system after being added dropwise
The reaction was continued 12 hours for room temperature, and acetic acid (5.9mL, 103.5mmol, 1.2eq) is added and is quenched instead, reaction solution is spin-dried for.Residue
It is resuspended in H2In O (100mL), filtered after continuing stirring 4 hours, H2O (4x 150mL) is washed, and cytimidine-is obtained after drying
1- benzylacetic acids 20.6g.It takes cytimidine -1- benzylacetic acids (20.6g, 82mmol, 1.0eq) to be dissolved in DMF (160mL), is added
N, N'- carbonyl dimidazoles (21.25g, 131.25mmol, 1.6eq).Methanol is added after the reaction was complete in TLC detections, continues to stir
1.5 hours, benzhydrol (19.65g, 106.5mmol, 1.3eq) is added.Reaction system is heated to 60 DEG C, in two batches later
Benzohydrol (2x1.825g, 9.9mmol, 0.12eq) is added in 1 hour in interval, and the reaction was continued 6 hours.Stop heating reaction 12
Hour, methanol (4.65g, 115mmol, 1.4eq) is added, reaction is quenched.Reaction solution is spin-dried for, residue continues to be tied again with ethyl alcohol
Crystalline substance, later methanol (100mL) be recrystallized to give (4-N- (hexichol methoxycarbonyl group)-cytimidine) -1- acetate 29.35g.Take (4-
N- (hexichol methoxycarbonyl group)-cytimidine) -1- acetate (29.35g, 62.5mmol, 1.0eq) is dissolved in acetonitrile:MeOH:H2O:
EtOH(2:2:1:1,350mL) in mixed solution system, heating makes compound dissolve, and is cooled to 0 DEG C later, and LiOH.H2O is added
The aqueous solution (196.8mL) of (25.5g, 0.61mol, 9.7eq).TLC detections find to be added after the reaction was complete citric acid (58.5g,
303.5,4.9eq reaction is quenched in aqueous solution (290mL)).Obtain (4-N- (hexichol methoxycarbonyl group)-cytimidine) -1- acetic acid
22.1g。1H NMR (400MHz, D6-DMSO, 25 DEG C) δ 8.03-8.01 (d, J=7.5,1H, C6), 7.46 (d, J=7.5,4H,
), Ph 7.38 (t, J=7.5,4H, Ph), 7.3 (d, J=7.5,2H, Ph), 6.96 (d, J=7.5,1H, C5),6.82(s,1H,
CH-(C6H5)2),4.50(s,2H,N-CH2-CO);13C NMR(100MHz,D6-DMSO,25℃)δ169.9,163.5,155.5,
152.8,151.1,140.8,129.0,128.3,126.9,94.2,71.9,51.3;HRMS(ESI)calculated for
C20H17N3O5:(M+Na+):402.1060,found:402.1010.
(12) 1,2, the synthesis of-two (oleyl)-glycerine -3- amine-(cytimidine -1- bases)-acetonyl ester (DNCA)
The synthetic route of DNCA is as shown in Figure 2.
Into dry 25mL eggplant-shape bottles be added (4-N- (hexichol methoxycarbonyl group)-cytimidine) -1- acetic acid (3.29g,
10mmol) with dry DMF (30mL), stirring makes it completely dissolved.Then n-hydroxysuccinimide is added thereto
(14.73g, 13mmol) and N, N '-dicyclohexylcarbodiimides (DCC, 2.06g, 10mmol).It is stirred overnight at room temperature, is precipitated big
Measure white precipitate.It is filtered to remove precipitation, then filtrate decompression distillation redissolves residue in DMF (5mL).It is added thereto
White solid is precipitated in anhydrous ether (30mL).The solid is obtained by filtration, is dried in vacuo, obtains target product 2.62g (yields
55%).White solid.By (4-N- (hexichol methoxycarbonyl group)-cytimidine)-(n-hydroxysuccinimide) -ester (476mg,
1.0mmol), 1,2,-two (oleyl)-glycerine -3- amine (910mg, 1.2mmol), DMPA (14.6mg, 0.1mmol), pyridine
(0.4mL) and anhydrous DMF (20mL) mix, and argon gas protection is stirred overnight at room temperature.It is dilute that ethyl acetate (200mL) is added thereto
It releases, is transferred in separatory funnel, use dilute hydrochloric acid (0.1M), saturation NaHCO successively3Aqueous solution, water, saturated salt solution rinse, and have
Machine is mutually dried with anhydrous sodium sulfate.It is filtered to remove drier, filtrate decompression is evaporated, and residue detaches (elution with silica gel column chromatography
Agent:Methylene chloride/methanol=50/1), obtain target product 485.5mg (yield 51%).By 1,2 ,-two (oleyl)-glycerine-
3- amine-(4-N- (hexichol methoxycarbonyl group)-cytimidine)-acetonyl ester (476mg, 0.5mmol) is dissolved in the CH of 5%TFA2Cl2(20mL)
In, it is stirred at room temperature 0.5 hour.DCM (30mL) is added and water (30mL) extracts liquid separation, water phase is stripped with DCM (2x30mL),
Merge organic phase.Organic phase uses 10%NaHCO successively3(200mL), water (200mL) and saturated salt solution (200mL) washing, nothing
Aqueous sodium persulfate is dried overnight.Evaporated under reduced pressure organic solvent, silica gel chromatograph post separation (eluant, eluent:Methylene chloride/methanol=50/1),
Obtain target product 345mg (yield 93%) DNCA:1H NMR(400MHz,CDCl3) δ=7.44-7.29 (m, 4H), 5.80 (d,
J=3.8Hz, 1H), 5.37 (dd, J=12.0,7.4Hz, 4H), 4.45 (s, 2H), 3.59-3.40 (m, 7H), 2.11-1.91
(m, 8H), 1.55 (s, 4H), 1.44-1.10 (m, 45H), 0.90 (t, J=6.4Hz, 6H) (ESI-MS) for C45H82N4O4[M
+H]+found 743.50,[M+Na]+found 756.44.calcd.742.21.