CN106047865B - A method of extracting total serum IgE from Chinese liquor fermentation fermented grain - Google Patents
A method of extracting total serum IgE from Chinese liquor fermentation fermented grain Download PDFInfo
- Publication number
- CN106047865B CN106047865B CN201610659247.3A CN201610659247A CN106047865B CN 106047865 B CN106047865 B CN 106047865B CN 201610659247 A CN201610659247 A CN 201610659247A CN 106047865 B CN106047865 B CN 106047865B
- Authority
- CN
- China
- Prior art keywords
- added
- supernatant
- centrifugation
- rnase
- rna
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1003—Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
Landscapes
- Chemical & Material Sciences (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Biomedical Technology (AREA)
- Life Sciences & Earth Sciences (AREA)
- Genetics & Genomics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Crystallography & Structural Chemistry (AREA)
- Plant Pathology (AREA)
- Molecular Biology (AREA)
- Microbiology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Analytical Chemistry (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
The method that the invention discloses a kind of to extract total serum IgE from Chinese liquor fermentation fermented grain, belongs to field of biotechnology.The present invention is directed to the particularity of white wine fermented grain sample, by combining sodium laurate (Sodium Laurate, SL) extraction process and guanidinium isothiocyanate-phenol-chloroform extraction process (Trizol), can in 2 hours rapidly extracting group microorganism total serum IgE.Using the microorganism total serum IgE yield of method extraction of the invention is high, integrality is good, purity is preferable, eukaryon and prokaryotic micro-organisms in sample can be effectively extracted.
Description
Technical field
The method that the present invention relates to a kind of to extract total serum IgE from Chinese liquor fermentation fermented grain, belongs to field of biotechnology.
Background technique
Under the conditions of the prior art, 95% or more microorganism can not be cultivated, this is that traditional microbiological ecology is disclosing nature
Biggest obstacle in boundary's biological community structure, ecological functions and its interrelationship study.In recent years, pass through macro transcription group
Method, the research environment microorganism from mRNA level in-site achieve very big success, and the result obtained is more acurrate, reliable.With
To going deep into for the structure and function research of group microorganism, need to extract the total serum IgE of whole microorganisms in a certain ecosystem
Basic demand as analysis group microorganism structure and function.
At present some about group microorganism method for extracting total RNA it is immediate be extract soil in group microorganism
Total serum IgE, but edaphon is compared with Chinese Maotai-flavor liquor fermented wine unstrained spirits, there is very big difference.Containing abundant in soil
The substances such as humic acid, polysaccharide, polyphenol, keep the microorganism total serum IgE purity extracted not high, and be widely present RNA enzyme in environment,
RNA is easily degraded by it, brings many difficulties to RNA extraction.Phenolic compound is easily oxidized to quinones substance in homogenate,
It is irreversibly combined with RNA, to influence isolating and purifying for total serum IgE.Many physicochemical properties of polysaccharide are similar to RNA, extracting
It can be co-precipitated in the process with RNA, it is difficult to separate.It is mainly various grains in white wine fermented grain unlike the case where soil, it is main
If sorghum.It is not only rich in polysaccharide polyphenol in grain, but also produces more cometabolisms during the utilization of microorganism
Product.Various secondary metabolites are even more that reaction can be difficult to expect with RNA.
The extracting method of RNA is mainly guanidinium isothiocyanate-phenol-chloroform extraction process (Trizol), dodecyl sulphate at present
Sodium (Sodium Dodecyl Sulfate, SDS) method, cetyl trimethylammonium bromide (Cetyltrimethylammonium
Bromide, CTAB) method and hot borate method etc..Wherein SDS method is preferable for the Total RNAs extraction effect of prokaryotic micro-organisms, but needle
To the eukaryotic microorganisms for having cell wall, the shell-broken effect of SDS is very bad, so not being available has protokaryon in existing eukaryon again
In group's microorganism Total RNAs extraction.And the operation of CTAB method needs to preheat, the excessively high meeting of temperature is so that RNA degrading enzyme becomes active and leads
Cause RNA be degraded, while CTAB method make well it is also long, it is troublesome in poeration, usually also LiCl is needed to be used cooperatively.Hot borate method is not
It only needs to add protease, the reagents such as KCl, while you also being needed to preheat, temperature is excessively high also to make RNA degrading enzyme become
Actively RNA is caused to be degraded.
In addition, these methods are all single for certain a kind of or a certain microorganism, it is micro- to be not particularly suited for extraction group
Biological the case where especially eukaryon and prokaryotic micro-organisms mix.By fermentation fermented grain to China white wine carry out 16S and
The identification of ITS amplicon finds the fermentation method in the semi-natural fermentation of China white wine, the fermentation of especially Chinese Maotai-flavor liquor
Mode determines that there are the group microorganisms that type and quantity are numerous in the fermentation fermented grain of white wine, including many common and special
Different eukaryon and prokaryotes, especially miscellaneous mould, yeast, bacterium, actinomyces etc..Therefore, a kind of letter is developed
Just, be suitble to rapidly extracting group microorganism total serum IgE method, be especially suitable for the group microorganism of liquor fermentation process
Method for extracting total RNA is necessary.
Summary of the invention
Based on the above issues, the purpose of the invention is to provide one kind to extract always from Chinese liquor fermentation fermented grain
The method of RNA is extracted by joint sodium laurate (Sodium Laurate, SL) extraction process and guanidinium isothiocyanate-phenol-chloroform
Method (Trizol), can in 2 hours rapidly extracting group microorganism total serum IgE.The microorganism extracted using method of the invention
Total serum IgE yield is high, integrality is good, purity is preferable, can effectively extract eukaryon and prokaryotic micro-organisms in sample.
The method that total serum IgE is extracted from liquor fermentation fermented grain, steps are as follows:
(1) fermented grain sample sterile PBS buffer is suspended and the concussion of bead whirlpool is added;
(2) supernatant is taken after low-speed centrifugal, precipitating PBS buffer solution repeated washing, low-speed centrifugal merge supernatant;
(3) the supernatant high speed centrifugation for obtaining step (2) takes precipitating, freezing;
It (4) will be based on volume parts, by 15-25 parts of sodium laurate extraction buffers, 15-25 parts Trizol, 0.5-1.5 parts
The extracting mixed liquor of mercaptoethanol and 0.5-1.5 parts of dithiothreitol (DTT)s (m/V) composition, mixes gently, and places on ice;
(5) sample by the freezing of step (3) is placed in the mortar of pre-cooling, pours into liquid nitrogen, is ground to powder rapidly, during which
It is continuously added liquid nitrogen, RNA in process of lapping is prevented to be degraded;
(6) ground powder is moved into the Rnase-free centrifuge tube equipped with extracting mixed liquor, is slowly shaken repeatedly
It is even;
(7) high speed centrifugation, Aspirate supernatant are placed in RNase-free centrifuge tube;
(8) chloroform of 0.8-1.2 times of volume (for the supernatant volume that previous step is drawn) is added, covers
Pipe lid, mixes gently, and places on ice;
(9) high speed centrifugation, Aspirate supernatant are placed in Rnase-free centrifuge tube;
(10) isopropanol of 0.5-1 times of volume (for the supernatant volume that previous step is drawn) is added, mixes
It is even, it places on ice;
(11) high speed centrifugation discards supernatant liquid;
(12) ethanol washing that volumetric concentration is 70-80% is added to precipitate, discards supernatant liquid after high speed centrifugation;
(13) RNase-Free ddH is added2O is to get the RNA for arriving dissolution.
In one embodiment of the present invention, PBS buffer solution concentration is 0.1mol/L (configuration method: 42.3ml 1mol/
LNaH2PO4With 57.7mL 1mol/L Na2HPO4, 121 DEG C of sterilizing 15min after being settled to 1L with deionized water).
Contain the humic acid scavenger of 0.25-0.5% (v/v) in one embodiment of the present invention, PBS buffer solution.
After being added to humic acid scavenger, obtained total rna concentration concentration is constant and purity is higher.
Sample and PBS are mixed according to the ratio of 1:2 (m/v) in one embodiment of the present invention, the step (1),
Bead dosage is the 1/5 of sample size;The concussion time is 2-3min.
In one embodiment of the present invention, the centrifugation time of the step (2) is 4-8min.
In one embodiment of the present invention, Rnase-free centrifuge tube is the 1.5mL used.
In one embodiment of the present invention, ground powder and extracting mixed liquor are according to 1:8-1:12 (m/v)
Ratio addition, i.e., every 1g ground powder are added 8-12mL and extract mixed liquor.
In one embodiment of the present invention, the low-speed centrifugal refers to that 450-550rpm, high speed centrifugation refer to 11000-
13000rpm。
In one embodiment of the present invention, the sodium laurate extraction buffer: the Tris-HCl of pH 8.0
The EDTA 0.02mol/L of 0.1mol/L, NaCl0.1mol/L, pH8.0, sodium laurate 10g/L, pH 8.0.
In one embodiment of the present invention, the Trizol reagent can be Invitrogen company
The TRI of Reagent, Sigma companyDeng the Trizol reagent for being also possible to above-mentioned company mixes according to a certain percentage
It obtains.
In one embodiment of the present invention, step (3), (7), (9), (11) time of centrifugation be 8-15min, step
(12) time of centrifugation is 2-5min.
10-25min is slowly shaken up repeatedly in one embodiment of the present invention, the step (6).
In one embodiment of the present invention, the centrifugation of step (7), (9), (11), (12) be under conditions of 0-4 DEG C into
Capable.
In one embodiment of the present invention, the step (8) places 0.5-2min on ice.
In one embodiment of the present invention, the step (10) places 15-25min on ice.
In one embodiment of the present invention, the ethyl alcohol volume that step (12) is added is 1mL.
In one embodiment of the present invention, step (13) is first to be placed at room temperature for 1-2min, and 30-50uL RNase- is added
Free ddH2O。
In one embodiment of the present invention, the method is specifically:
(1) 25g sample is taken to be dissolved in sterile 0.1mol/L PBS (the 42.3ml 1mol/LNaH of 50ml2PO4And 57.7ml
1mol/L Na2HPO4, 121 DEG C of sterilizing 15min after being settled to 1L with deionized water) and buffer suspension, 5 5-6mm glass are added
Pearl, whirlpool shake 2-3min;
(2) 500rpm is centrifuged 5min, takes supernatant, and precipitating is washed repeatedly three times with PBS buffer solution, is collected after centrifugation in whole
Clearly;
(3) supernatant 12000rpm is centrifuged 15min, discards supernatant, covers pipe lid, liquid nitrogen frozen;
(4) prepare extracting mixed liquor (by 20 parts of sodium laurate extraction buffers, 20 parts of Trizol, 1 part of mercaptoethanol and 1
Part dithiothreitol (DTT) composition), it mixes gently, places on ice;
(5) sample is placed in mortar by mortar with Liquid nitrogen precooler, pours into liquid nitrogen, is ground to powder rapidly, is during which constantly added
Enter liquid nitrogen, RNA in process of lapping is prevented to be degraded;
(6) ground powder (about 0.15g) is moved into the 1.5mL Rnase-free centrifuge tube equipped with mixed liquor, instead
It is multiple slowly to shake up 15-20min;
(7) it is taken out after 4 DEG C of centrifugation 10min of 12000rpm, careful Aspirate supernatant is placed in 1.5mL Rnase-free centrifugation
Guan Zhong;
(8) isometric chloroform is added, covers pipe lid, mixes gently, place 1min on ice;
(9) it is taken out after 4 DEG C of centrifugation 10min of 12000rpm, careful Aspirate supernatant is placed in 1.5mL Rnase-free centrifugation
Pipe;
(10) isopropanol of 0.7 times of volume is added, mixes, places 15-25min on ice;
(11) 4 DEG C of centrifugation 10min of 12000rpm, discard supernatant liquid;
(12) (v/v) ethanol washing of 1ml 75% precipitating is added, 4 DEG C of centrifugations of 12000rpm are centrifuged 3min.Liquid is poured out,
It is careful not to pour out precipitating, remaining liquid is sucked out with pipette tips, is careful not to be drawn onto precipitating;
(13) it is placed at room temperature for 1-2min, 30uL RNase-Free ddH is added2O blows and beats repeatedly, mixes, sufficiently dissolves
RNA。
In one embodiment of the invention, RNase-Free ddH in the step (13)2It is also protected containing RNA in O
Deposit reagent and Dnase.
The present invention has the following advantages and effects:
1) easy to operate: extraction process is simple, easy to operate;Overcome existing SDS, in CTAB and hot boric acid extraction process,
It needs to preheat, needs to be added batch-wise protease, the shortcomings that the reagents such as KCl, effectively prevent being heated at high temperature and be easy to accelerate RNA points
The probability for solving enzyme degradation of rna, is pre-mixed
2) excellent effect: operating process, whole liquid reagents are added to RNase inhibitor in advance in operating process, all
It operates at low temperature, hinders RNA as far as possible and be degraded, to enable RNA concentration in 900-1200ng/uL.
3) applied widely: be applicable in different regions, separate sources China white wine fermented grain in microorganism total serum IgE extraction,
By the analysis of subsequent macro transcript profile, eukaryon and prokaryotic micro-organisms have good recovery rate (Fig. 2).
Detailed description of the invention
Fig. 1: the extraction effect under different method for extracting;Wherein swimming lane 1 is the RNA that embodiment 1 obtains, and swimming lane 2 is to implement
The RNA that example 2 obtains, swimming lane 3 are the RNA that embodiment 3 obtains, and swimming lane 4 is the RNA that Trizol extraction process extracts, and swimming lane 5 is
The RNA obtained using the extracting mixed liquor that mercaptoethanol is not added, swimming lane 6 are to use RNase-Free ddH2O is obtained instead of PBS
RNA;
Fig. 2: macro transcriptome analysis.
Specific embodiment
Reagent configuration:
(1) sterile 0.1mol/LPBS buffer:
42.3mL 1mol/L NaH2PO4With 57.7mL 1mol/L Na2HPO4, 121 DEG C after being settled to 1L with deionized water
Sterilize 15min.
(2) sodium laurate extraction buffer:
Tris-HCl(pH8.0)0.1mol/L;NaCl 0.1mol/L;EDTA(pH8.0)0.02mol/L;Sodium laurate
10g/L.NaCl 5.844g is accurately weighed, sodium laurate 10g is placed in 1000mL beaker, and 100ml Tris-HCl is added
(1mol/L), 40mL EDTA (0.5mol/L) and 800mL RNase-free ddH2O is settled to salt acid for adjusting pH to 8.0
1L, room temperature preservation after sterilizing.
(3) Trizol reagent uses the TRIzol reagent of Invitrogen company.
(4) 75% (v/v) ethyl alcohol: by 7.5 parts of dehydrated alcohols and 2.5 parts of RNase-free ddH2O configuration.
Embodiment 1:
The microorganism total serum IgE of Chinese Maotai-flavor liquor fermented wine unstrained spirits is extracted in accordance with the following methods:
(1) 25g sample is taken to be dissolved in sterile 0.1mol/L PBS (the 42.3ml 1mol/LNaH of 50mL2PO4And 57.7ml1mol/
LNa2HPO4, 121 DEG C of sterilizing 15min after being settled to 1L with deionized water) and buffer suspension, 5g bead is added, whirlpool shakes 2-
3min;
(2) 500rpm is centrifuged 5min, takes supernatant, and precipitating is washed repeatedly three times with PBS buffer solution, is collected after centrifugation in whole
Clearly;Remaining impurity in addition to microorganism in fermentation fermented grain is eliminated by step (1) and step (2), wrapped solid grain
And it is dissolved in the polysaccharide and heteroacid of liquid;
(3) supernatant 12000rpm is centrifuged 15min, discards supernatant, covers pipe lid, liquid nitrogen frozen;
(4) prepare extracting mixed liquor (by 20 parts of sodium laurate extraction buffers, 20 parts of Trizol, 1 part of mercaptoethanol and 1
Part dithiothreitol (DTT) composition, wherein liquid is figured according to parts by volume, and solid is figured according to mass parts, and quality is than the unit of volume
G/mL), mix gently, place on ice;
(5) sample is placed in mortar by mortar with Liquid nitrogen precooler, pours into liquid nitrogen, is ground to powder rapidly, is during which constantly added
Enter liquid nitrogen, make microbial cell breakage, and RNA in process of lapping is prevented to be degraded;
(6) ground powder (about 0.15g) is moved into the 1.5mL Rnase-free centrifuge tube equipped with mixed liquor, instead
It is multiple slowly to shake up 15-20min;
(7) it is taken out after 4 DEG C of centrifugation 10min of 12000rpm, careful Aspirate supernatant is placed in 1.5mL Rnase-free centrifugation
Guan Zhong;
(8) isometric chloroform is added, covers pipe lid, mixes gently, place 1min on ice;
(9) it is taken out after 4 DEG C of centrifugation 10min of 12000rpm, careful Aspirate supernatant is placed in 1.5mL Rnase-free centrifugation
Pipe;
(10) isopropanol of 0.7 times of volume is added, mixes, places 15-25min on ice;
(11) 4 DEG C of centrifugation 10min of 12000rpm, discard supernatant liquid;
(12) (v/v) ethanol washing of 1ml 75% precipitating is added, 4 DEG C of centrifugations of 12000rpm are centrifuged 3min.Liquid is poured out,
It is careful not to pour out precipitating, remaining liquid is sucked out with pipette tips, is careful not to be drawn onto precipitating;
(13) it is placed at room temperature for 1-2min, 30uL RNase-Free ddH is added2O blows and beats repeatedly, mixes, sufficiently dissolves
RNA。
Embodiment 2:
The microorganism total serum IgE of Chinese Fermentation of Fen-flavor Liquors fermented grain is extracted in accordance with the following methods:
(1) it takes 25g sample to be dissolved in the sterile 0.1mol/L PBS buffer solution of 50mL to suspend, 5g bead, whirlpool concussion is added
2-3min;
(2) 550rpm is centrifuged 4min, takes supernatant, and precipitating is washed repeatedly three times with PBS buffer solution, is collected after centrifugation in whole
Clearly;Remaining impurity in addition to microorganism in fermentation fermented grain is eliminated by step (1) and step (2), wrapped solid grain
And it is dissolved in the polysaccharide and heteroacid of liquid;
(3) supernatant 11000rpm is centrifuged 8min, discards supernatant, covers pipe lid, liquid nitrogen frozen;
(4) prepare extracting mixed liquor (by 15 parts of sodium laurate extraction buffers, 25 parts of Trizol, 0.5 part of mercaptoethanol and
1.5 parts of dithiothreitol (DTT) compositions), it mixes gently, places on ice;
(5) sample is placed in mortar by mortar with Liquid nitrogen precooler, pours into liquid nitrogen, is ground to powder rapidly, is during which constantly added
Enter liquid nitrogen, make microbial cell breakage, and RNA in process of lapping is prevented to be degraded;
(6) ground powder (about 0.15g) is moved into the 1.5mL Rnase-free centrifuge tube equipped with mixed liquor, instead
It is multiple slowly to shake up 20min;
(7) it is taken out after 4 DEG C of centrifugation 12min of 12000rpm, careful Aspirate supernatant is placed in 1.5mL Rnase-free centrifugation
Guan Zhong;
(8) chloroform of 0.8 times of volume is added, covers pipe lid, mixes gently, place 1min on ice;
(9) it is taken out after 4 DEG C of centrifugation 15min of 13000rpm, careful Aspirate supernatant is placed in 1.5mL Rnase-free centrifugation
Pipe;
(10) isopropanol of 1 times of volume is added, mixes, places 15-25min on ice;
(11) 4 DEG C of centrifugation 8min of 11000rpm, discard supernatant liquid;
(12) 70% (v/v) ethanol washing precipitating is added, 4 DEG C of centrifugations of 12000rpm are centrifuged 3min.Liquid is poured out, is paid attention to
Precipitating is not poured out, remaining liquid is sucked out with pipette tips, is careful not to be drawn onto precipitating;
(13) it is placed at room temperature for 1-2min, 30uL RNase-Free ddH is added2O blows and beats repeatedly, mixes, sufficiently dissolves
RNA。
Embodiment 3:
The microorganism total serum IgE of Chinese flavor liquor fermentation fermented grain is extracted in accordance with the following methods:
(1) it takes 25g sample to be dissolved in the sterile 0.1mol/L PBS buffer solution of 50mL to suspend, 5g bead, whirlpool concussion is added
2-3min;
(2) 450rpm is centrifuged 8min, takes supernatant, and precipitating is washed repeatedly three times with PBS buffer solution, is collected after centrifugation in whole
Clearly;Remaining impurity in addition to microorganism in fermentation fermented grain is eliminated by step (1) and step (2), wrapped solid grain
And it is dissolved in the polysaccharide and heteroacid of liquid;
(3) supernatant 13000rpm is centrifuged 12min, discards supernatant, covers pipe lid, liquid nitrogen frozen;
(4) prepare extracting mixed liquor (25 parts of sodium laurate extraction buffers, 15 parts of Trizol, 1.5 parts of mercaptoethanols and
0.5 part of dithiothreitol (DTT) composition), it mixes gently, places on ice;
(5) sample is placed in mortar by mortar with Liquid nitrogen precooler, pours into liquid nitrogen, is ground to powder rapidly, is during which constantly added
Enter liquid nitrogen, make microbial cell breakage, and RNA in process of lapping is prevented to be degraded;
(6) ground powder (about 0.15g) is moved into the 1.5mL Rnase-free centrifuge tube equipped with mixed liquor, instead
It is multiple slowly to shake up 15min;
(7) it is taken out after 4 DEG C of centrifugation 8min of 11500rpm, careful Aspirate supernatant is placed in 1.5mL Rnase-free centrifugation
Guan Zhong;
(8) chloroform of 1.2 times of volumes is added, covers pipe lid, mixes gently, place 1min on ice;
(9) it is taken out after 4 DEG C of centrifugation 12min of 13000rpm, careful Aspirate supernatant is placed in 1.5mL Rnase-free centrifugation
Pipe;
(10) isopropanol of 0.5 times of volume is added, mixes, places 15-25min on ice;
(11) 4 DEG C of centrifugation 15min of 12000rpm, discard supernatant liquid;
(12) (v/v) ethanol washing of 1mL 80% precipitating is added, 4 DEG C of centrifugations of 12000rpm are centrifuged 3min.Liquid is poured out,
It is careful not to pour out precipitating, remaining liquid is sucked out with pipette tips, is careful not to be drawn onto precipitating;
(13) it is placed at room temperature for 1-2min, 50uL RNase-Free ddH is added2O blows and beats repeatedly, mixes, sufficiently dissolves
RNA。
According to electrophoresis detection result (Fig. 1) display for the RNA solution that the method for embodiment 1-3 obtains, using of the invention
The total serum IgE that sodium laurate extraction process combination Trizol extraction process extracts all has two complete 28S and 18S rRNA items
Band (the swimming lane 1-3 of Fig. 1), and the total serum IgE for compareing the extraction of Trizol extraction process is not generally visible (swimming lane 4 of Fig. 1), shows this hair
Bright method can extract the total serum IgE of high quality.
Control:
Control 1: it using Trizol extraction process, in particular to changes the extracting mixed liquor of step (4) into Trizol and (is free of
Have sodium laurate extraction buffer, dithiothreitol (DTT) and mercaptoethanol), other steps and embodiment 1 are consistent;Obtained total serum IgE
The swimming lane 4 of electrophoretogram such as Fig. 1.
Control 2: mercaptoethanol is not added in extracting mixed liquor;Other steps and embodiment 1 are consistent;Obtained total serum IgE electrophoresis
The swimming lane 5 of figure such as Fig. 1.In addition, dithiothreitol (DTT) is not added in extracting mixed liquor, or dithiothreitol (DTT) and sulfydryl second are not added simultaneously
Alcohol, obtained total serum IgE electrophoretogram are similar with the swimming lane 5 of Fig. 1.
Control 3: RNase-Free ddH is used2O replaces the PBS buffer solution in step (1) and (2), other steps and reality
It is consistent to apply example 1;The swimming lane 6 of obtained total serum IgE electrophoretogram such as Fig. 1.
1 total rna concentration of table
Concentration (ng/uL) | Total content (ug/uL) | A260/280 | |
Embodiment 1 | 632.8 | 30.3 | 1.71 |
Embodiment 2 | 933.2 | 60.1 | 1.82 |
Embodiment 3 | 417.5 | 22.7 | 1.55 |
Control 1 | 107.6 | 3.8 | 1.43 |
Control 2 | 82.8 | 2.4 | 1.29 |
Control 3 | 54.3 | 1.5 | 1.18 |
The RNA that embodiment 1 is obtained carries out macro transcript profile sequencing, as a result as shown in Figure 2.The result shows that it is total to extract gained
Existing combining yeast in RNA, Pichia pastoris, saccharomyces cerevisiae this kind eukaryotic microorganisms also have lactic acid bacteria, streptococcus, actinomyces
This kind of prokaryotic micro-organisms illustrate that this extracting method effectively while can extract eukaryon and prokaryotic micro-organisms.And it originally mentions
Taking method, there is no Preferences, can completely save the ratio of eukaryon and prokaryotic micro-organisms in group microorganism.
To sum up, the method for the invention Total RNAs extraction suitable for all kinds of white wine fermented grains, and extraction effect is good, can obtain
To two complete 28S and 18S ribosomic RNA bands, the total serum IgE of eukaryotic microorganisms and prokaryotic micro-organisms can also all be extracted
Out, the RNA obtained is suitable for subsequent macro transcription group analysis.
Although the present invention has been described by way of example and in terms of the preferred embodiments, it is not intended to limit the invention, any to be familiar with this skill
The people of art can do various change and modification, therefore protection model of the invention without departing from the spirit and scope of the present invention
Enclosing subject to the definition of the claims.
Claims (1)
1. a kind of method for extracting total serum IgE from liquor fermentation fermented grain, which is characterized in that the step of the method is as follows:
(1) fermented grain sample sterile PBS buffer is suspended and the concussion of bead whirlpool is added;
(2) supernatant is taken after low-speed centrifugal, precipitating PBS buffer solution repeated washing, low-speed centrifugal merge supernatant;
(3) the supernatant high speed centrifugation for obtaining step (2) takes precipitating, freezing;
It (4) will be by 15-25 parts of sodium laurate extraction buffers, 15-25 parts of Trizol, 0.5-1.5 parts of mercaptoethanols and 0.5-1.5
The extracting mixed liquor of part dithiothreitol (DTT) composition, mixes gently, and places on ice, the sodium laurate extraction buffer: pH 8.0
Tris-HCl 0.1mol/L, NaCl 0.1mol/L, pH8.0 EDTA 0.02mol/L, sodium laurate 10g/L, pH 8.0;
(5) sample by the freezing of step (3) is placed in the mortar of pre-cooling, pours into liquid nitrogen, is ground to powder rapidly, during which continuous
Liquid nitrogen is added, RNA in process of lapping is prevented to be degraded;
(6) ground powder is moved into the Rnase-free centrifuge tube equipped with extracting mixed liquor, is slowly shaken up repeatedly, institute
Stating ground powder and extracting mixed liquor is added according to the ratio that m/V is 1:8-1:12;
(7) high speed centrifugation, Aspirate supernatant are placed in Rnase-free centrifuge tube;
(8) chloroform of 0.8-1.2 times of volume is added, covers pipe lid, mixes gently, places on ice;
(9) high speed centrifugation, Aspirate supernatant are placed in Rnase-free centrifuge tube;
(10) isopropanol of 0.5-1 times of volume is added, mixes, places on ice;
(11) high speed centrifugation discards supernatant liquid;
(12) ethanol washing that volumetric concentration is 70-80% is added to precipitate, discards supernatant liquid after high speed centrifugation 2-5min;
(13) it is first placed at room temperature for 1-2min, 30-50 μ L RNase-Free ddH is added2O to get to dissolution RNA,
The low-speed centrifugal refers to that revolving speed is 450-550rpm, and the high speed centrifugation refers to that revolving speed is 11000-13000rpm, step
Suddenly centrifugation described in (7), (9), (11) or (12) is carried out under conditions of 0-4 DEG C, step (3), (7), (9) or (11) institute
The time for the centrifugation stated is 8-15min.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201610659247.3A CN106047865B (en) | 2016-08-11 | 2016-08-11 | A method of extracting total serum IgE from Chinese liquor fermentation fermented grain |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201610659247.3A CN106047865B (en) | 2016-08-11 | 2016-08-11 | A method of extracting total serum IgE from Chinese liquor fermentation fermented grain |
Publications (2)
Publication Number | Publication Date |
---|---|
CN106047865A CN106047865A (en) | 2016-10-26 |
CN106047865B true CN106047865B (en) | 2019-11-08 |
Family
ID=57481548
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN201610659247.3A Active CN106047865B (en) | 2016-08-11 | 2016-08-11 | A method of extracting total serum IgE from Chinese liquor fermentation fermented grain |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN106047865B (en) |
Families Citing this family (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN106480018A (en) * | 2016-12-15 | 2017-03-08 | 北京顺鑫农业股份有限公司牛栏山酒厂 | A kind of method extracting Fermentation of Fen-flavor Liquors fermented grain total serum IgE |
CN108192892B (en) * | 2018-03-01 | 2021-12-28 | 杭州比格飞序生物科技有限公司 | Kit for extracting RNA by hydroxyl nano-magnetic bead method and extraction method |
CN110066735B (en) * | 2019-03-05 | 2021-04-27 | 北京顺鑫农业股份有限公司牛栏山酒厂 | Method for analyzing microbial community structure in brewing process of fen-flavor liquor |
CN110305862B (en) * | 2019-08-19 | 2023-05-09 | 郑州轻工业学院 | Method for extracting total RNA from fermented grains of Luzhou-flavor liquor |
CN110592075A (en) * | 2019-09-29 | 2019-12-20 | 北京顺鑫农业股份有限公司牛栏山酒厂 | Method for rapidly and efficiently extracting RNA (ribonucleic acid) of fermented grains |
Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN102854272A (en) * | 2012-09-07 | 2013-01-02 | 湖南师范大学 | Treatment method of sample for membrane protein analysis identification |
CN103695414A (en) * | 2013-12-24 | 2014-04-02 | 齐鲁工业大学 | Method for efficiently extracting microorganism total RNA (Ribonucleic Acid) from anaerobic granular sludge |
Family Cites Families (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
ATE307199T1 (en) * | 1999-12-18 | 2005-11-15 | Gen Ial Gen Inst Fuer Angewand | METHOD AND COMPOSITIONS FOR ISOLATION AND PURIFICATION OF NUCLEIC ACIDS |
-
2016
- 2016-08-11 CN CN201610659247.3A patent/CN106047865B/en active Active
Patent Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN102854272A (en) * | 2012-09-07 | 2013-01-02 | 湖南师范大学 | Treatment method of sample for membrane protein analysis identification |
CN103695414A (en) * | 2013-12-24 | 2014-04-02 | 齐鲁工业大学 | Method for efficiently extracting microorganism total RNA (Ribonucleic Acid) from anaerobic granular sludge |
Non-Patent Citations (1)
Title |
---|
浓香型白酒酒醅可培养真菌的分离、鉴定;张晓娟等;《酿酒科技》;20150731;28-33 * |
Also Published As
Publication number | Publication date |
---|---|
CN106047865A (en) | 2016-10-26 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN106047865B (en) | A method of extracting total serum IgE from Chinese liquor fermentation fermented grain | |
Combina et al. | Dynamics of indigenous yeast populations during spontaneous fermentation of wines from Mendoza, Argentina | |
Maqueda et al. | Characterization, ecological distribution, and population dynamics of Saccharomyces sensu stricto killer yeasts in the spontaneous grape must fermentations of southwestern Spain | |
CN104955948A (en) | Method for the specific isolation of nucleic acids of interest | |
CN102031249A (en) | Simple nucleic acid purifying method | |
Clavijo et al. | Yeast assessment during alcoholic fermentation inoculated with a natural “pied de cuve” or a commercial yeast strain | |
CN101845436B (en) | Method for simultaneously extracting total DNA and RNA from compost | |
CN102206626A (en) | Method for extracting total RNA of multifarious fruit trees | |
CN101709298A (en) | Soil DNA extracting method for evaluating diversity of microbial community of plant root system | |
CN101684137A (en) | Method for extracting total DNA of microorganism in liquor Daqu | |
CN105002165A (en) | Method for improving extraction quality of total DNA of koji kaoliang spirit fermented grains through pretreatment | |
CN103820434A (en) | Method for extracting total DNA (deoxyribonucleic acid) of fungal hyphae | |
Yee et al. | A simple and inexpensive physical lysis method for DNA and RNA extraction from freshwater microalgae | |
CN105063016A (en) | Method for extracting microorganism total DNA from yellow rice wine wheat koji | |
CN107475243A (en) | A kind of method for improveing phenol extracted total RNA | |
CN102703430A (en) | Method for extracting microorganism total DNA (Deoxyribonucleic Acid) in pu'er tea piling fermentation process | |
CN105505920A (en) | Novel method for extracting recalcitrant plant tissue DNA | |
CN102925334B (en) | Integrated control method for reducing ethyl carbamate (EC) in alcohol beverage | |
CN110305862B (en) | Method for extracting total RNA from fermented grains of Luzhou-flavor liquor | |
CN109439652A (en) | A kind of extracting method of the plant genome DNA rich in polysaccharide | |
CN214088464U (en) | A kit structure for appraising ginseng true and false | |
CN106947759A (en) | A kind of method that high efficiency extracts mould genomic DNA | |
CN110029104A (en) | A kind of extracting method of the bacillus licheniformis RNA suitable for fermentation process | |
CN103333883B (en) | A kind of high efficiency extraction is used for the method for the groundwater microbial DNA of pcr amplification | |
Turzhanova et al. | OPTIMIZATION OF DNA EXTRACTION FROM FILAMENTOUS FUNGI ALTERNARIA SP. AND FUSARIUM SP. |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
C06 | Publication | ||
PB01 | Publication | ||
C10 | Entry into substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |