Summary of the invention
Technical problem to be solved by this invention is to provide a kind of channel catfish species identification kit and using method thereof, solves the deficiencies in the prior art, utilizes manufactured channel catfish finished product and work in-process, identifies fast and easily the channel catfish species.
The technical scheme that the present invention solves the problems of the technologies described above is as follows: a kind of channel catfish species identification kit comprises the reagent that following separation is packed: lysate, extraction liquid I, extraction liquid II, PCR reaction solution, endonuclease reaction liquid, negative control and positive control;
Described lysate pH value is 8, comprises following component: 200mmol/L NaCl, 20mmol/LTris-HCl, 50mmol/L EDTA, 1%SDS, and all the other are water;
Described extraction liquid I comprises phenol, chloroform and primary isoamyl alcohol, and wherein the volume ratio of phenol, chloroform and primary isoamyl alcohol is 25:24:1;
Described extraction liquid II comprises chloroform and primary isoamyl alcohol, and wherein the volume ratio of chloroform and primary isoamyl alcohol is 24:1;
Described PCR reaction solution comprises following component: 10 * PCR Buffer, MgCl
2, dNTPs, upstream primer, downstream primer, Taq archaeal dna polymerase, all the other are ultrapure water; Concrete primer sequence is:
Upstream primer: 5 '-GTCGCCTCCGTACTGTATTTCTCC-3 ',
Downstream primer: 5 '-GGGTCCATCTTAACATCTTCAGTG-3 ';
Described endonuclease reaction liquid comprises 10 * Buffer and EcoR I;
Described positive control be after pcr amplification enzyme cut the channel catfish D-loop standard model identified (being that known channel catfish species D-loop carries out the product result that pcr amplification and enzyme obtain after cutting);
Described negative control is the channel catfish D-loop standard model cut of enzyme (be known channel catfish species D-loop carry out pcr amplification do not carry out enzyme and cut the product result obtained) not after pcr amplification.
On the basis of technique scheme, the present invention can also do following improvement.
Further, in described PCR reaction solution, contain 10 * PCR Buffer2.5 μ l, MgCl
22.0 μ l, dNTPs2.0 μ l, upstream primer 0.5 μ l, downstream primer 0.5 μ l, Taq archaeal dna polymerase 0.5 μ l, and ultrapure water 16 μ l.
Further, in described endonuclease reaction liquid, contain 10 * Buffer2.0 μ l and EcoR I 1.0 μ l.
Further, described lysate room temperature is deposited, and described extraction liquid I and extraction liquid II are stored in 4 ℃, and PCR reaction solution, endonuclease reaction liquid, negative control and positive control are stored in-20 ℃.
Another technical scheme that the present invention solves the problems of the technologies described above is as follows: a kind of using method of channel catfish species identification kit comprises the following steps:
Step 1, DNA extraction:
1) get sample 0.08~0.12g to be detected, after fully pulverizing, add 500 μ l lysates, be placed in 50~60 ℃ of water-baths and hatch 1h~2h, obtain mixed solution;
2) in mixed solution, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor;
3) in supernatant liquor, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor;
4) in supernatant liquor, add equal-volume extract II, carry out the centrifugal 10min of 12000r/min, get supernatant liquor;
5) in supernatant liquor, add the NaAC of 1/10 volume and the dehydrated alcohol of 2 times of volumes, mix gently, in-20 ℃ of precipitation 1h, then carry out the centrifugal 10min of 12000r/min;
6) solution after centrifugal is cleaned once with the ethanol that volume fraction is 70%, the more centrifugal 5min of 10000r/min, remove supernatant liquor, be precipitated;
7) will precipitate natural air drying, and add 100 μ l sterilized waters and dissolve, obtain DNA solution, standby;
Step 2, pcr amplification:
1) the PCR reaction solution that thaws on ice, make it to dissolve fully, and the PCR reaction solution is joined in the PCR reaction tubes;
2) get the DNA solution 1 μ l that step 1 obtains, add in the PCR reaction tubes, mix;
3) the PCR reaction tubes is put into to the PCR instrument, response procedures is as follows: 95 ℃ of denaturation 5min, and 94 ℃ of sex change 30s, annealing 30s, 72 ℃ are extended 1min, 35 circulations, last 72 ℃ are extended 10min, then are cooled to 12 ℃;
4) the PCR product of gained is placed on ice and can uses, or be placed in-20 ℃ standby;
Step 3, enzyme is cut evaluation:
1) get step 2 and obtain PCR product 5 μ l, mix with endonuclease reaction liquid, 37 ℃ of incubation 2~3h, obtain enzyme and cut product;
2) above-mentioned enzyme is cut to product and positive control and negative control and carried out agarose gel electrophoresis, take and identify whether testing sample is channel catfish according to electrophoresis result.
The invention has the beneficial effects as follows: mitochondrion DNA control area has individuality and group specificity, therefore be used as widely in the world the standard of species evaluation, especially D-loop control region, different plant species differs greatly, can the precise Identification species, on the basis to the D-loop order-checking, find its restriction enzyme site, and carry out enzyme and cut evaluation, do not need order-checking can identify simply the channel catfish species.Test kit of the present invention can be quick and easy complete above-mentioned steps, from molecular level, identify the channel catfish species, operation is simple, Fast Practical, spent time is of short duration, extremely is applicable to channel catfish species in foreign trade are carried out to Rapid identification.
Embodiment
Below in conjunction with accompanying drawing, principle of the present invention and feature are described, example, only be used to explaining the present invention, is not intended to limit scope of the present invention.
A kind of channel catfish species identification kit, each test kit can detect 10 samples, and described test kit comprises the reagent of following separation packing: lysate, extraction liquid I, extraction liquid II, PCR reaction solution, endonuclease reaction liquid, negative control and positive control;
Described lysate pH value is 8, comprises following component: 200mmol/L NaCl, 20mmol/LTris-HCl, 50mmol/L EDTA, 1%SDS, and all the other are water; The each 500 μ l that use of described lysate, contain altogether 5ml in each test kit; Room temperature is deposited.
Described extraction liquid I comprises phenol, chloroform and primary isoamyl alcohol, and wherein the volume ratio of phenol, chloroform and primary isoamyl alcohol is 25:24:1; 50ml phenol, 48ml chloroform and 2ml primary isoamyl alcohol are mixed, obtain 100m and extract the liquid I; Described extraction liquid I is used 1ml at every turn, in each test kit, contains altogether 10ml; 4 ℃ of storages;
Described extraction liquid II comprises chloroform and primary isoamyl alcohol, and wherein the volume ratio of chloroform and primary isoamyl alcohol is 24:1; 96ml chloroform and 4ml primary isoamyl alcohol are mixed, obtain 100m and extract the liquid II; The each 500 μ l that use of described extraction liquid II, contain altogether 5ml in each test kit; 4 ℃ of storages;
Described PCR reaction solution comprises following component: 2.5 μ l10 * PCR Buffer, 2.0 μ l MgCl
2, 2.0 μ l dNTPs, 0.5 μ l upstream primer, 0.5 μ l downstream primer, 0.5 μ l Taq archaeal dna polymerase, and ultrapure water 16 μ l; The each 24 μ l that use of described PCR reaction solution, contain altogether 240 μ l in each test kit;-20 ℃ of storages;
Concrete primer sequence is:
Upstream primer: 5 '-GTCGCCTCCGTACTGTATTTCTCC-3 ',
Downstream primer: 5 '-GGGTCCATCTTAACATCTTCAGTG-3 ';
Described endonuclease reaction liquid comprises 2.0 μ l10 * Buffer and 1.0 μ l EcoR I, and the each 3 μ l that use of described endonuclease reaction liquid, contain altogether 30 μ l in each test kit;-20 ℃ of storages;
Described positive control be after pcr amplification enzyme cut the channel catfish D-loop standard model of identifying, the each 5 μ l that use of described positive control, contain altogether 50 μ l in each test kit;-20 ℃ of storages;
Described negative control is the channel catfish D-loop standard model cut of enzyme not after pcr amplification, and the each 5 μ l that use of described negative control, contain altogether 50 μ l in each test kit;-20 ℃ of storages.
Choose at random 50 of channel catfish work in-process to be exported, sample is numbered to 1~50, choose at random 5 samples, carry out following experiment.
Embodiment 1
Step 1, DNA extraction: get sample 0.1g to be detected No. 10, after fully pulverizing, add 500 μ l lysates, be placed in 53 ℃ of water-baths and hatch 1.5h, obtain mixed solution; In mixed solution, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add equal-volume extract II, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add the NaAC of 1/10 volume and the dehydrated alcohol of 2 times of volumes, mix gently, in-20 ℃ of precipitation 1h, then carry out the centrifugal 10min of 12000r/min; Solution after centrifugal is cleaned once with the ethanol that volume fraction is 70%, the more centrifugal 5min of 10000r/min, remove supernatant liquor, be precipitated; To precipitate natural air drying, and add 100 μ l sterilized waters and dissolve, obtain DNA solution, standby;
Step 2, pcr amplification: the PCR reaction solution that thaws on ice, make it to dissolve fully, the PCR reaction solution is joined in the PCR reaction tubes; Get the DNA solution 1 μ l that step 1 obtains, add in the PCR reaction tubes, mix; The PCR reaction tubes is put into to the PCR instrument, and response procedures is as follows: 95 ℃ of denaturation 5min, and 94 ℃ of sex change 30s, annealing 30s, 72 ℃ are extended 1min, 35 circulations, last 72 ℃ are extended 10min, then are cooled to 12 ℃; The PCR product of gained is placed in to be prepared directly to use on ice;
Step 3, enzyme is cut evaluation: get step 2 and obtain PCR product 5 μ l, mix with endonuclease reaction liquid, 37 ℃ of incubation 2.5h, obtain enzyme and cut product; Above-mentioned enzyme is cut to product and carry out agarose gel electrophoresis, acquired results is shown in Fig. 1.
Embodiment 2
Step 1, DNA extraction: get sample 0.08g to be detected No. 27, after fully pulverizing, add 500 μ l lysates, be placed in 50 ℃ of water-baths and hatch 1h, obtain mixed solution; In mixed solution, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add equal-volume extract II, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add the NaAC of 1/10 volume and the dehydrated alcohol of 2 times of volumes, mix gently, in-20 ℃ of precipitation 1h, then carry out the centrifugal 10min of 12000r/min; Solution after centrifugal is cleaned once with the ethanol that volume fraction is 70%, the more centrifugal 5min of 10000r/min, remove supernatant liquor, be precipitated; To precipitate natural air drying, and add 100 μ l sterilized waters and dissolve, obtain DNA solution, standby;
Step 2, pcr amplification: the PCR reaction solution that thaws on ice, make it to dissolve fully, the PCR reaction solution is joined in the PCR reaction tubes; Get the DNA solution 1 μ l that step 1 obtains, add in the PCR reaction tubes, mix; The PCR reaction tubes is put into to the PCR instrument, and response procedures is as follows: 95 ℃ of denaturation 5min, and 94 ℃ of sex change 30s, annealing 30s, 72 ℃ are extended 1min, 35 circulations, last 72 ℃ are extended 10min, then are cooled to 12 ℃; The PCR product of gained is placed in to be prepared directly to use on ice;
Step 3, enzyme is cut evaluation: get step 2 and obtain PCR product 5 μ l, mix with endonuclease reaction liquid, 37 ℃ of incubation 2h, obtain enzyme and cut product; Above-mentioned enzyme is cut to product and carry out agarose gel electrophoresis, acquired results is shown in Fig. 1.
Embodiment 3
Step 1, DNA extraction: get sample 0.12g to be detected No. 30, after fully pulverizing, add 500 μ l lysates, be placed in 60 ℃ of water-baths and hatch 2h, obtain mixed solution; In mixed solution, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add equal-volume extract II, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add the NaAC of 1/10 volume and the dehydrated alcohol of 2 times of volumes, mix gently, in-20 ℃ of precipitation 1h, then carry out the centrifugal 10min of 12000r/min; Solution after centrifugal is cleaned once with the ethanol that volume fraction is 70%, the more centrifugal 5min of 10000r/min, remove supernatant liquor, be precipitated; To precipitate natural air drying, and add 100 μ l sterilized waters and dissolve, obtain DNA solution, standby;
Step 2, pcr amplification: the PCR reaction solution that thaws on ice, make it to dissolve fully, the PCR reaction solution is joined in the PCR reaction tubes; Get the DNA solution 1 μ l that step 1 obtains, add in the PCR reaction tubes, mix; The PCR reaction tubes is put into to the PCR instrument, and response procedures is as follows: 95 ℃ of denaturation 5min, and 94 ℃ of sex change 30s, annealing 30s, 72 ℃ are extended 1min, 35 circulations, last 72 ℃ are extended 10min, then are cooled to 12 ℃; The PCR product of gained is placed in to be prepared directly to use on ice;
Step 3, enzyme is cut evaluation: get step 2 and obtain PCR product 5 μ l, mix with endonuclease reaction liquid, 37 ℃ of incubation 3h, obtain enzyme and cut product; Above-mentioned enzyme is cut to product and carry out agarose gel electrophoresis, acquired results is shown in Fig. 1.
Embodiment 4
Step 1, DNA extraction: get sample 0.09g to be detected No. 34, after fully pulverizing, add 500 μ l lysates, be placed in 55 ℃ of water-baths and hatch 1.3h, obtain mixed solution; In mixed solution, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add equal-volume extract II, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add the NaAC of 1/10 volume and the dehydrated alcohol of 2 times of volumes, mix gently, in-20 ℃ of precipitation 1h, then carry out the centrifugal 10min of 12000r/min; Solution after centrifugal is cleaned once with the ethanol that volume fraction is 70%, the more centrifugal 5min of 10000r/min, remove supernatant liquor, be precipitated; To precipitate natural air drying, and add 100 μ l sterilized waters and dissolve, obtain DNA solution, standby;
Step 2, pcr amplification: the PCR reaction solution that thaws on ice, make it to dissolve fully, the PCR reaction solution is joined in the PCR reaction tubes; Get the DNA solution 1 μ l that step 1 obtains, add in the PCR reaction tubes, mix; The PCR reaction tubes is put into to the PCR instrument, and response procedures is as follows: 95 ℃ of denaturation 5min, and 94 ℃ of sex change 30s, annealing 30s, 72 ℃ are extended 1min, 35 circulations, last 72 ℃ are extended 10min, then are cooled to 12 ℃; The PCR product of gained is placed in to be prepared directly to use on ice;
Step 3, enzyme is cut evaluation: get step 2 and obtain PCR product 5 μ l, mix with endonuclease reaction liquid, 37 ℃ of incubation 2.3h, obtain enzyme and cut product; Above-mentioned enzyme is cut to product and carry out agarose gel electrophoresis, acquired results is shown in Fig. 1.
Embodiment 5
Step 1, DNA extraction: get sample 0.11g to be detected No. 42, after fully pulverizing, add 500 μ l lysates, be placed in 58 ℃ of water-baths and hatch 1.8h, obtain mixed solution; In mixed solution, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add equal-volume extract I, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add equal-volume extract II, carry out the centrifugal 10min of 12000r/min, get supernatant liquor; In supernatant liquor, add the NaAC of 1/10 volume and the dehydrated alcohol of 2 times of volumes, mix gently, in-20 ℃ of precipitation 1h, then carry out the centrifugal 10min of 12000r/min; Solution after centrifugal is cleaned once with the ethanol that volume fraction is 70%, the more centrifugal 5min of 10000r/min, remove supernatant liquor, be precipitated; To precipitate natural air drying, and add 100 μ l sterilized waters and dissolve, obtain DNA solution, standby;
Step 2, pcr amplification: the PCR reaction solution that thaws on ice, make it to dissolve fully, the PCR reaction solution is joined in the PCR reaction tubes; Get the DNA solution 1 μ l that step 1 obtains, add in the PCR reaction tubes, mix; The PCR reaction tubes is put into to the PCR instrument, and response procedures is as follows: 95 ℃ of denaturation 5min, and 94 ℃ of sex change 30s, annealing 30s, 72 ℃ are extended 1min, 35 circulations, last 72 ℃ are extended 10min, then are cooled to 12 ℃; The PCR product of gained is placed in to be prepared directly to use on ice;
Step 3, enzyme is cut evaluation: get step 2 and obtain PCR product 5 μ l, mix with endonuclease reaction liquid, 37 ℃ of incubation 2.8h, obtain enzyme and cut product; Above-mentioned enzyme is cut to product and carry out agarose gel electrophoresis, acquired results is shown in Fig. 1.
Negative comparative example
Negative control is carried out to agarose gel electrophoresis, and acquired results is shown in Fig. 1.
Positive comparative example
Positive control is carried out to agarose gel electrophoresis, and acquired results is shown in Fig. 1.
Interpretation of result: as shown in Figure 1, the negative contrast of c1, do not have two sections of digested one-tenth, and its position 1 is 1162bp; The positive contrast of c2, two sections of digested one-tenth, 10,27,30,34,42 are the sample number into spectrum chosen at random, have also digestedly become two sections, and long one section position 2 is 961bp, and short one section position 3 is 201bp.Through the detection of channel catfish species identification kit, the five tail samples of choosing at random all belong to the channel catfish species.By experimental result, can be found out, channel catfish species identification kit, very high to the specificity of the evaluation of channel catfish species, recall rate can reach 100%, is applicable to import and export the evaluation of channel catfish fully.
The foregoing is only preferred embodiment of the present invention, in order to limit the present invention, within the spirit and principles in the present invention not all, any modification of doing, be equal to replacement, improvement etc., within all should being included in protection scope of the present invention.