AU775925B2 - Molecular scaffolds acting as templates comprising carbamate linkages - Google Patents

Molecular scaffolds acting as templates comprising carbamate linkages Download PDF

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AU775925B2
AU775925B2 AU20496/00A AU2049600A AU775925B2 AU 775925 B2 AU775925 B2 AU 775925B2 AU 20496/00 A AU20496/00 A AU 20496/00A AU 2049600 A AU2049600 A AU 2049600A AU 775925 B2 AU775925 B2 AU 775925B2
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carbon atoms
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carbon
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David S Jones
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La Jolla Pharmaceutical Co
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La Jolla Pharmaceutical Co
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D295/00Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms
    • C07D295/16Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms acylated on ring nitrogen atoms
    • C07D295/20Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms acylated on ring nitrogen atoms by radicals derived from carbonic acid, or sulfur or nitrogen analogues thereof
    • C07D295/205Radicals derived from carbonic acid
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C233/00Carboxylic acid amides
    • C07C233/64Carboxylic acid amides having carbon atoms of carboxamide groups bound to carbon atoms of six-membered aromatic rings
    • C07C233/67Carboxylic acid amides having carbon atoms of carboxamide groups bound to carbon atoms of six-membered aromatic rings having the nitrogen atom of at least one of the carboxamide groups bound to a carbon atom of a hydrocarbon radical substituted by singly-bound oxygen atoms
    • C07C233/68Carboxylic acid amides having carbon atoms of carboxamide groups bound to carbon atoms of six-membered aromatic rings having the nitrogen atom of at least one of the carboxamide groups bound to a carbon atom of a hydrocarbon radical substituted by singly-bound oxygen atoms with the substituted hydrocarbon radical bound to the nitrogen atom of the carboxamide group by an acyclic carbon atom
    • C07C233/69Carboxylic acid amides having carbon atoms of carboxamide groups bound to carbon atoms of six-membered aromatic rings having the nitrogen atom of at least one of the carboxamide groups bound to a carbon atom of a hydrocarbon radical substituted by singly-bound oxygen atoms with the substituted hydrocarbon radical bound to the nitrogen atom of the carboxamide group by an acyclic carbon atom of an acyclic saturated carbon skeleton
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C271/00Derivatives of carbamic acids, i.e. compounds containing any of the groups, the nitrogen atom not being part of nitro or nitroso groups
    • C07C271/06Esters of carbamic acids
    • C07C271/08Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms
    • C07C271/10Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms
    • C07C271/16Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to carbon atoms of hydrocarbon radicals substituted by singly-bound oxygen atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C271/00Derivatives of carbamic acids, i.e. compounds containing any of the groups, the nitrogen atom not being part of nitro or nitroso groups
    • C07C271/06Esters of carbamic acids
    • C07C271/08Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms
    • C07C271/10Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms
    • C07C271/20Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to carbon atoms of hydrocarbon radicals substituted by nitrogen atoms not being part of nitro or nitroso groups
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D231/00Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings
    • C07D231/02Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings not condensed with other rings
    • C07D231/10Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members
    • C07D231/12Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members with only hydrogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D233/00Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings
    • C07D233/54Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings having two double bonds between ring members or between ring members and non-ring members
    • C07D233/56Heterocyclic compounds containing 1,3-diazole or hydrogenated 1,3-diazole rings, not condensed with other rings having two double bonds between ring members or between ring members and non-ring members with only hydrogen atoms or radicals containing only hydrogen and carbon atoms, attached to ring carbon atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D249/00Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms
    • C07D249/02Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms not condensed with other rings
    • C07D249/081,2,4-Triazoles; Hydrogenated 1,2,4-triazoles

Description

WO 00/34231 PCT/US99/29339 MOLECULAR SCAFFOLDS ACTING AS TEMPLATES COMPRISING CARBAMATE LINKAGES TECHNICAL FIELD This invention pertains generally to valency molecules. The invention also relates to the field of valency platform molecules which act as scaffolds to which one or more molecules may be covalently tethered to form a conjugate. More particularly, the present invention pertains to valency molecules which comprise a carbamate linkage -0- In one aspect, the present invention pertains to valency platforms comprising carbamate linkages, which molecules have the structure of any one of Formulae I, II, or III, shown in Figure 1. In one aspect, the present invention pertains to valency platforms comprising carbamate linkages, which molecules have the structure of any one of Formulae IV, V, or VI, shown in Figure 8. The present invention also pertains to methods of preparing such valency molecules, conjugates comprising such valency molecules, and methods of preparing such conjugates.
WO 00/34231 PCT/US99/29339
BACKGROUND
A "valency platform" is a molecule with one or more (and typically multiple) attachment sites which can be used to covalently attach biologically active molecules of interest to a common scaffold. The attachment of biologically active molecules to a common scaffold provides multivalent conjugates in which multiple copies of the biologically active molecule are covalently linked to the same platform. A "defined" or "chemically defined" valency platform is a platform with defined structure, thus a defined number of attachment points and a defined valency. A defined valency platform conjugate is a conjugate with defined structure and has a defined number of attached biologically active compounds. Examples of biologically active molecules include oligonucleotides, peptides, polypeptides, proteins, antibodies, saccharides, polysaccharides, epitopes, mimotopes, drugs, and the like. In general, biologically active compounds interact specifically with proteinaceous receptors.
Certain classes of chemically defined valency platforms, methods for their preparation, conjugates comprising them, and methods for the preparation of such conjugates, have been described in the U.S. Patents Nos. 5,162,515; 5,391,785; 5,276,013; 5,786,512; 5,726,329; 5,268,454; 5,552,391; 5,606,047; and 5,663,395.
The valency platforms of the present invention reflect a new class of valency platforms which comprise a carbamate linkage, as shown, for example, in Formulae I, II, and III in Figure 1 and in Formulae IV, V, and VI in Figure 8.
1 5 SUMMARY OF THE INVENTION One aspect of the present invention pertains to a valency platform compound having the structure of one of the following formulae: WO 00/34231 PCT/US9929339 Formula I Formula II Formula III
R
c -4- 0 J-C-1 I I wherein: n is a positive integer from 1 to y y2, and y 3 are independently 1 or 2; J independently denotes either an oxygen atom or a covalent bond; Rc is selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each G 2 and G 3 is independently selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; WO 00/34231 PCT/US999339 organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; each R" is independently selected from the group consisting of: hydrogen; linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to 15 carbon atoms; aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; each Z is independently selected from the group consisting of:
-H
-C(=O)ORcA
-C(=O)R
T
-C(=O)NRARB
wherein: each R cA R is organic groups comprising from 1 to about 20 carbon atoms; each R E ER is organic groups comprising from 1 to about 20 carbon atoms; each group -NRARB is independently selected from the group consisting of:
-NH
2
-NHRA
-NRARB
-NR
wherein each monovalent R A and RB and each divalent RB is independently an organic group comprising from. 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group.
In one embodiment, said compound has the structure of Formula I. In one embodiment, said compound has the structure of Formula II. In one embodiment, said compound has the structure of Formula III. In one embodiment, said compound has the WO 00/34231 PCT/US99/29339 structure of Formula IV. In one embodiment, n is a positive integer from 2 to 4. In one embodiment, y' y 2 and y 3 are each 2. In one embodiment, J is an oxygen atom. In one embodiment, J is a covalent bond. In one embodiment, Rc is selected from the group consisting of hydrocarbyl groups having from 1 to 20 carbon atoms. In one embodiment,
R
c is selected from the group consisting of:
-CH
2
-CH
2
CH
2
-CH
2
CH
2
CH
2
CH
2
S,-CH
2
,C-CH
2
CH
2 Sand In one embodiment, RC is selected from the group consisting of organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms. In one embodiment, Rc is:
S+CH
2
-CH
2 -0CH 2
-CH
2 p-I wherein p is a positive integer from 2 to 20. In one embodiment, each G 2 and G 3 is independently selected from the group consisting of hydrocarbyl groups having from 1 to carbon atoms. In one embodiment, each G 2 and G 3 is -(CH 2 wherein q is a positive integer from 1 to 20. In one embodiment, each G 2 and G 3 is independently selected from the group consisting of organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms. In one embodiment, each G',
G
2 and G 3 is:
+CH
2
-CH
2
CH
2
-CH
2 p- WO 00/34231 PCT/US99/29339 wherein p is a positive integer from 2 to 20. In one embodiment, R N is independently selected from the group consisting of-H, -CH 3 and -CH 2
CH
3 In one embodiment, each group -NRAR" is independently selected from the group consisting of: -N N-H -N
N-C-O-CH
2 -N NH.HBr 0 -N
N-C-CH
2
-X
-NH -(CH 2
NH
2 O
CH
3 S11
I
-NH-CH2CH2-NH-C-O-C-CH 3
I
CH
3 and 0 NH -CHCH 2 0 -CH 2
CH
2
-NH
2 <n Another aspect of the present invention pertains to a valency platform compound having the structure of one of the following formulae: Formula IV Rc- J-C-N-GI
O-Z
I n WO 00/34231 PCT/US99/29339 Formula V
R
c O-C-N--G O-Z RN RN y y 1 n Formula VI O 0 O RC_ C-N-G2- -O-C-N--G3
O-Z
I I N I N
R
N R
RN
wherein: n is a positive integer from 1 to y' y 2 and y 3 are independently a positive integer from 1 to J independently denotes either an oxygen atom or a covalent bond; Rc is selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each G 2 and G 3 is independently selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; each R
N
is independently selected from the group consisting of: WO 00/34231 PCT/US99/29339 hydrogen; linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to 15 carbon atoms; aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; each Z is independently selected from the group consisting of:
-H
-C(=O)ORCAB
-C(=O)RESTR
-C(=O)NRARB
wherein: each R c R is organic groups comprising from 1 to about 20 carbon atoms; each RESE is organic groups comprising from I to about 20 carbon atoms; each group -NRARB is independently selected from the group consisting of:
-NH
2
-NHRA
-NRAR
-NR
wherein each monovalent RA and RB and each divalent RAB is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group.
In one embodiment, said compound has the structure of Formula V. In one embodiment, said compound has the structure of Formula VI. In one embodiment, said compound has the structure of Formula VII. In one embodiment, n is a positive integer from 2 to 4. In one embodiment, y' y 2 and y 3 are each 2. In one embodiment, J is an oxygen atom. In one embodiment, J is a covalent bond. In one embodiment, Rc is selected from the group consisting of hydrocarbyl groups having from 1 to 20 carbon atoms. In one embodiment, Rc is selected from the group consisting of:
-CH
2 WO 00/34231 PCT/US99/29339
-CH
2
CH
2
-CH
2
CH
2
CH
2
CH,
-CH
2
-C-CH
2
CH
2 ;and In one embodiment, Rc is selected from the group consisting of organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from I to 20 carbon atoms. In one embodiment. Rc is:
S-CH
2
-CH
2
-O-CH
2
-CH
2 wherein p is a positive integer from 2 to 20. In one embodiment, each G 2 and G 3 is independently selected from the group consisting of hydrocarbyl groups having from 1 to carbon atoms. In one embodiment, each G 2 and G 3 is selected from the group consisting of:
CH
2
CH
2 CH2-
C
H -C-CH 3
C-CH
2
CH
3
CH
2 2 and
H
2 In one embodiment, each G 2 and G 3 is independently selected from the group consisting of organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms. In one embodiment, each RN is independently selected from the group consisting of-H, -CH 3 and -CH 2
CH
3 In one embodiment, each group -NRARB is independently selected from the group consisting of: -N N-H -N N N-C-O-CH 2 07/07 '04 10:44 F.A 61 3 9663 3099 FB RICE CO. ~1007 -N NH.HBr o -N N-C-CH 2
-X
-NHCH2 -NH2 O CH3 II I -NH-CHzCH 2 -NH-C-0-C-CH 3
CH
3 and
-N#CH
C
HH
2 0 HCH 2 -NH2 Another aspect of the present invention pertains to methods of preparing a valency platform compound, as described herein.
Another aspect of the present invention pertains to a conjugate comprising a .valency platform compound, as described herein, covalently linked to one or more biologically active molecules. In one embodiment, said biologically active molecules are selected from the group consisting of: oligonucleotides, peptides, polypeptides, proteins, antibodies, saccharides, polysaccharides, epitopes, mimotopes, and drugs.
Another aspect of the present invention pertains to methods of preparing conjugates, as described herein.
15 The present invention provides a compound having the structure of the following formula: Formula III 0 0 0 3 o-Z I I RN RN 2-y 3 2-y 1 2wherein: m:\specifications\090000\90000\93827cmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:44 FAX 61 3 9663 3099 FB RICE CO. Q008 n is a positive integer from 1 to y' y 2 and y are independently 1 or 2; J independently denotes either an oxygen atom or a covalent bond;
R
c is selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and hiving from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each G 2 and G 3 is independently selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms;
S
S- organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and e having from 1 to 20 carbon atoms; each RN is independently selected from the group consisting of: hydrogen; linear or branched alkyl groups having from 1 to 15 carbon atoms; oee@ alkyl groups comprising an alicyclic structure and having from 1 to 15 carbon atoms; aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; *25 each Z is independently selected from the group consisting of:
-H
-C(=O)R
ES
T
R
-C(=O)NRARB
wherein: each R
CA
is an organic group comprising from 1 to about 20 carbon atoms; each Rs'T R is an organic group comprising from 1 to about 20 carbon atoms; each group -NRAR 3 is independently selected from the group consisting of: -NHi 2
-NHRA^
.NRARB
m:\specificatons\090000\93000\93827dcmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:44 FA 61 3 9663 3099 FB RICE CO. I009 l0b
NRAB
wherein each monovalent RA and R? and ea.h divalent R
A
O is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group; wherein the compound has at least three carbamate linkages and at least two branches.
The present invention also provides a compound, wherein the compound is valency platform molecule having the structure of the following formula: Formula I I NI y o L t J wherein: n is a positive integer from I to y y2, and y 3 are independently I or 2; J is an oxygen atom; Rc is selected from the group consisting of: hydrocarbyl groups having from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; 2 r0g. co nsisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from i to 20 carbon atoms; each G 2 and G 3 is independently selected from the group consisting of: hydrocarbyl groups having from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; each RN is independently selected from the group consisting ofhydrogen; m:\specifications\09000\93000\93827clmhxg.doc COMS 10 No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 04 10:44 FAX 61 3 9663 3099 FB RICE CO. o010 linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to 15 carbon atoms; aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; each Z is independently selected from the group consisting of:
-H
-C(&O)OR
C
A
-C(=O)RESTER
-C(=O)NRA^R
wherein: each R
C
J
R
B is an organic group comprising from 1 to about 20 carbon atoms; each RETER is an organic group comprising from 1 to about 20 carbon atoms; each group -NR^AR is independently selected from the group consisting of: 15 -NH2
-NHR
A
-NRARB
-NRAB
wherein each monovalent RA and R B and each divalent R B is independently an 20 organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group; wherein the compound has at least three carbamate linkages and at least two
S
S
S
S
S
0 5 a a 5*55 branches.
The present invention also provide a compound, wherein the 25 valency platform molecule having the structure of the following formula: compound is Formula II wherein: m:\specificatIons\090000\93000\93827dmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:45 FAX 61 3 9663 3099 FB RICE CO. 0011 n is a positive integer from 1 to y2 and y 3 are independently 1 or 2; J independently denotes either an oxygen atom or a covalent bond;
R
c is selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each G 2 and G 3 is independently selected from the group consisting of hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having 15 from 1 to 20 carbon atoms; .*organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; each R is independently selected from the group consisting of: hydrogen; linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to 15 carbon atoms; aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; !_ia .l.f 1 tl arnim nn qi-zhno7 of
S*
-H
-C.(=O)OR
C(=O)R
.C(=O)NRARB
wherein: each R cA RB is an organic group comprising from 1 to about 20 carbon atoms; each R s
TE
R is an organic group comprising from 1 to about 20 carbon atoms; each group -N'R'R is independently selected from the group consisting of:
-NH
2
-NHR
A
-NRE
-NRA
2 m:\specifications\090000\93000\93827dmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:45 FAX 61 3 9663 3099 FB RUCE CO.
Qo12 wherein each monovalent RA and R B and each divalent RA is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group; wherein the compound has at least three carbamate linkages and at least two branches.
The present invention also provides a compound having the structure of one of the following formulae: Formula V 0
II
-a-c- 0 0* 0000 0 0 *0 0* 0e 0 *00* *000 0 0 0e0@ 0*0
S
0 0@ 0 *0* 00S* 0 I Y Formula VI 0
II
1 I N
R
wherein: n is a positive integer from 1 to y, 2, and y3 are independently a positive integer from 1 to J independently denotes either an oxygen atom or a covalent bond; Rc is selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and m:\aspecificatons090OO\9300\93827clmhxg.doC COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 04 10:45 FAX 61 3 9663 3099 FB RICE CO. [1013 having from 1 to 20 carbon atoms; each G 2 and G3 is independently selected from the group consisting of: hydrocarbyl groups having from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; each RN is independently selected from the group consisting of: hydrogen; linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to 15 carbon atoms; aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; each Z is independently selected from the group consisting of:
S
-H
-CAORB
-C(=O)ORCa @560 C(-O)R ESIU
-O)NIR"
R
B
S0 wherein: each RCAP is an organic group comprising from 1 to about 20 carbon atoms; each RE 5 s is an organic group comprising from I to about 20 carbon atoms; .each group -NRAR B is independently selected from the group consisting of:
-NH
2
O
K-rO A ooo *A ,I A 25 -NRARB S t
AB
S wherein each monovalent RA and R 6 and each divalent R A is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group; wherein the compound has at least three carbamate linkages and at least two branches.
The present invention also provides a compound having the structure of the following formula: m:\specificabons\090000\93D000\93827cimhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:45 FAX 61 3 9663 3099 FB RICE CO. ]014 lOg Formula IV 0 r I- J N- 01 O-Z I I y
R"
n wherein: n is a positive integer from 1 to y' y2, and y3 are independently a positive integer from 1 to J is an oxygen atom; Re is selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having 10 from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from I to 20 carbon atoms; each 0 1
G
2 and G 3 is independently selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; .organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; 9O.
atoigalic gro si g Y.I ,floye itrogen; and hydrogen atoms, and 20 having from 1 to 20 carbon atoms; ~each R N is independently selected from the group consisting of: S -o hydrogen; linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to 15 carbon atoms; aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; each Z is independently selected from the group consisting of:
-H
-C(=O)OR
t AR C(O)R S R
-C(=O)NRAR
B
m:\specfications\090000\93000\93827clmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:46 FAI 61 3 9663 3099 FB RICE CO. Z015 wherein: each R
C
is an organic group comprising from 1 to about 20 carbon atoms; each R Er M is an organic group comprising from 1 to about 20 carbon atoms; each group -NARB is independently selected from the group consisting of: -NHz -NI-je -Nee^
NR^RB
-NR
A
wherein each monovalent RA and R B and each divalent RAB is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group; and wherein the compound has at least three carbamate linkages and at least two branches.
The present invention also provides a compound having the structure of the 15 following formula: Formula I :1oI I -A n is a positive integer from ito 10; and are independently or 2; J-C-N--4-G OnZ L L20 J is n oxygen atom; wherein: yl, y2, and y 3 are independently 1 or 2; RC is selected from the group consisting of.
hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each G 2 and G 3 is independently selected from the group consisting of: m:specifications\90000093000\93827dmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:46 FAX 61 3 9663 3099 FB RICE CO. 0016 hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; each e is independently selected from the group consisting of: hydrogen; linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to 15 carbon atoms; aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; each Z is independently selected from the group consisting of:
-H
S -C(=O)OR :15 ca
-C(=O)NRARB
wherein: *o each R C ARB is an organic group comprising from 1 to about 20 carbon atoms; each RE 6 E^ is an organic group comprising from I to about 20 carbon atoms; each group -NRARB is independently selected from the group consisting of: -NH2 -N A
-NRARE
NR.aD.
25 wherein each monovalent RA and RB and each divalent RA is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive *conjugating functional group; wherein Z does not comprise a peptide; and wherein the compound has at least three carbamnate linkages and at least two branches.
The present invention also provides a compound having the structure of the following formula: m:\specftlcaUons\090000\93000\93827cimhxg.d6c COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:46 FAX 61 3 9663 3099 FB RICE CO. ]017 1oj Formula II 11 1 2 ±R-J-CYLI G-O-CflF 4 Gil L~ I y2.y wherein: n is a positive integer from 1 to y2, and y 3 are independently 1 or 2; J independently denotes either an oxygen atom or a covalent bond; Rc is selected from the group consisting of: bo" hydrocarbyl groups having from 1 to 20 carbon atoms; 10 organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; S" organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each (3G1, G(3 2 and G 3 is independently selected from the group consisting of: S: hydrocarbyl groups having from 1 to 20 carbon atoms; organic rnups cnnsisting only of carbon. oxeygen- and hydrogen atoms, and having :bo: from 1 to 20 carbon atoms; 20 organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and ea having from 1 to 20 carbon atoms; each RN is independently selected from the group consisting of: hydrogen; linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to 15 carbon atoms; aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; each Z is independently selected from the group consisting of:
-H
-C(=O)OR
c m:\specficaions\9OOO93OOO3827clmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:46 FAX 61 3 9663 3099 FB RICE CO. 018
-C(=O)R
1
-C(=O)NRAR
B
wherein: each R is an organic group comprising from 1 to about 20 carbon atoms; each R e Ta is an organic group comprising from I to about 20 carbon atoms; each group -NRARB is independently selected from the group consisting of:
-NH
2
-NIHR^
-NRARI
-NR
A
wherein each monovalent RA and RB and each divalent RAB is independently an organic group comprising from I to 20 carbon atoms, and further comprising a reactive conjugating functional group; 15 wherein Z does not comprise a peptide; and wherein the compound has at least three carbamate linkages and at least two branches.
ooooAny discussion of documents, acts, materials, devices, articles or the like which has been included in the present specification is solely for the purpose of providing a context for the present invention. It is not to be taken as an admission that any or all of these matters form part of the prior art base or were common general knowledge in the field relevant to the present invention as it existed before the priority date of each claim of this application.
rihroughou this speu"fi datio p "ri. or variations such as :25 "comprises" or "comprising"'!, will be understood to imply the inclusion of a stated element, integer or step, or group of elements, integers or steps, but not the exclusion of C "any other element integer or step, or group of elements, integers or steps.
As will be appreciated by one of skill in the art, features of one aspect or embodiment of the invention are also applicable to other aspects or embodiments of the inventionm:\specioalUons\090000\93000\93827cmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 WO 00/34231 PCT/US99/29339 BRIEF DESCRIPTION OF THE DRAWINGS Figure 1 shows certain valency platforms of the present invention, specifically, those having the structure of Formulae I, II, and III.
Figure 2 shows certain valency platforms of the present invention, specifically, some of those having the structure of Formula I.
Figure 3 shows certain valency platforms of the present invention, specifically, some of those having the structure of Formula I.
Figure 4 shows certain valency platforms of the present invention, specifically, some of those having the structure of Formula II.
Figure 5 shows certain valency platforms of the present invention, specifically, some of those having the structure of Formula II.
Figure 6 shows certain valency platforms of the present invention, specifically, some of those having the structure of Formula III.
Figure 7 shows certain valency platforms of the present invention, specifically, some of those having the structure of Formula I.
Figure 8 shows certain valency platforms of the present invention, specifically, those having the structure of Formulae VI, V, and VI.
Figure 9 shows a synthetic scheme for a simple example of"core propagation" to obtain valency platforms of the present invention.
Figure 10 shows synthetic schemes for the preparation of certain intermediates useful in the preparation of valency platforms of the present invention.
Figures 11A and 11B show synthetic schemes for the preparation of valency platform molecules of the present invention.
Figures 12A and 12B show synthetic schemes for the preparation of valency platform molecules of the present invention.
Figure 13 shows a synthetic schemes for the preparation of valency platform molecules of the present invention.
Figures 14A and 14B show synthetic schemes for the preparation of valency platform molecules of the present invention.
WO 00/3423 1 PCT/US99/29339 Figure 15 shows a synthetic schemes for the preparation of valency platform molecules of the present invention.
Figures 16A and 16B show synthetic schemes for the preparation of valency platform molecules of the present invention.
Figures 17A, 17B, 17C, and 17D show synthetic schemes for the preparation of valency platform molecules of the present invention.
Figures 18A and 18B show synthetic schemes for the preparation of valency platform molecules of the present invention.
Figure 19 shows a synthetic schemes for the preparation of valency platform molecules of the present invention.
Figures 20A and 20B show synthetic schemes for the preparation of valency platform molecules of the present invention.
Figure 21 shows the structure of examples of two carbamate compounds 39b and 39c.
DETAILED DESCRIPTION OF THE INVENTION Throughout this application, various publications, patents, and published patent applications are referred to by an identifying citation. The disclosures of the publications, patents, and published patent specifications referenced in this aoplicti n re h, ,-re incorporated by reference into the present disclosure in their entirety.
In one embodiment, valency molecules are provided that comprise branches, wherein at each branch, the molecule branches into two or more arms. The arms also may comprise branches. The valency molecule further comprises terminal groups on arms extending from the branches. Exemplary terminal groups are reactive conjugating functional groups. This is illustrated in the Figures, for example, by compound 14 in Figure 11 B, which includes 6 branches and 8 terminal CBZ-protected amino groups.
Thus, in one embodiment, provided is a composition comprising valency molecules, wherein each valency molecule comprises at least two branches, at least four terminal WO 00/34231 PCT/US99/29339 groups, and at least 2 carbamate linkages; and wherein said valency molecules have a polydispersity less than about 1.2, or for example, less than about 1.07. The valency molecules further can comprise, for example, at least 4 carbamate linkages, at least 4 branches and at least 8 terminal groups. The valency molecules may be dendrimers.
The number of branches in the valency molecule may vary and may be, for example, 2, 3, 4, 5, 6, 8, 9, 10, 11, 12, 16, 32, 64, 100 or more branches. The number of branches can be, for example, 2-64, 2-32, 2-16, 4-64, 4-32, 8-64, or 8-32. In a further embodiment, the number of branches may be, for example, at least 2, at least 4, at least 6, or at least 8.
The number of carbamate linkages may vary. The valency molecule can include, for example, 2, 3, 4, 5, 6, 8, 9, 10, 11, 12, 15, 16, 18, 20, 24, 29, 32, 64, 100 or more carbamate linkages. The number of carbamate linkages can be, for example, 2-64, 2-32, 2- 16, 4-64, 4-32, 8-64, or 8-32. In a further embodiment, the number of carbamate linkages may be, for example, at least 2, at least 4, at least 6, or at least 8.
Each valency molecule can comprise for example, 1 to 100, e.g, 1-50 terminal groups. For example, the valency molecule may comprise 4, 6, 8, 9, 10, 12, 14, 15, 16, 18, 20, 21, 24, 29, or 32 or more terminal groups. The valency molecule, for example. may comprise at least 4 terminal groups, or at least 6 terminal groups, or at least 8 terminal groups. The valency molecule in one embodiment has, for example, 4-16, 4-32, 4-64, 8-32, 8-64, 12-32 or 12-64 terminal groups. The said terminal groups are in one embodiment identical.
Examples of valency molecules include valency platform molecules. Valency molecules can be made as described herein for the synthesis of valency platform molecules.
WO 00/34231 PCT/US99/29339 A. Valency Platforms In one aspect, the present invention pertains to valency platforms comprising carbamate linkages and methods for the preparation of such platforms.
Particular advantages of the present invention include, but are not limited to, the ease of synthesis of valency platform molecules, the metabolic stability of the carbamate linkages in the valency platform, the ability to adjust the length and water solubility of the "arms" of the valency platform by using, for example, different dialcoholamines, the ability to further attenuate the properties of the valency platform by choice of the core group attachment of solubilizing groups, chromophores, reporting groups, targeting groups, and the like).
In one embodiment, a composition is provided comprising valency platform molecules, wherein each valency platform molecule comprises at least 2 carbamate linkages and at least 4 reactive conjugating functional groups; and wherein said valency platform molecules have a polydispersity less than about 1.2, or optionally a polydispersity less than about 1.07. The valency platform molecules of the composition may comprise, for example, at least 4 carbamate linkages and at least 8 reactive functional groups. In one embodiment, the valency platform molecules comprise at least 4 identical reactive conjugating functional groups. In another embodiment, the valency platform molecules comprise, for example, 2-32 carbamate linkages and 4-64 reactive functional groups. The valency platform molecules optionally may be linked to one or more biologically active molecules, via the reactive conjugating functional groups.
The valency molecules, such as valency platform molecules have the advantage of having a substantially homogeneous uniform) molecular weight (as opposed to polydisperse molecular weight), and are thus "chemically defined". Accordingly, a population of these molecules (or conjugates thereof) are substantially monodisperse, i.e., have a narrow molecular weight distribution. A measure of the breadth of distribution of molecular weight of a sample of a platform molecule (such as a composition and/or WO 00/34231 PCT/US99/29339 population of platform molecules) is the polydispersity of the sample. Polydispersity is used as a measure of the molecular weight homogeneity or nonhomogeneity of a polymer sample. Polydispersity is calculated by dividing the weight average molecular weight (Mw) by the number average molecular weight The value of Mw/Mn is unity for a perfectly monodisperse polymer. Polydispersity (Mw/Mn) is measured by methods available in the art, such as gel permeation chromatography. The polydispersity (Mw/Mn) of a sample of valency molecules is preferably less than 2, more preferably, less than 1.5, or less than 1.2, less than 1.1, less than 1.07, less than 1.02, or, about 1.05 to 1.5 or about 1.05 to 1.2. Typical polymers generally have a polydispersity of 2-5, or in some cases, or more. Advantages of the low polydispersity property of the valency platform molecules include improved biocompatibility and bioavailability since the molecules are substantially homogeneous in size, and variations in biological activity due to wide variations in molecular weight are minimized. The low polydispersity molecules thus are pharmaceutically optimally formulated and easy to analyze.
Further there is controlled valency in a population of the valency molecules. Thus, in a population of valency platform molecules, for example, the number of attachment sites, reactive conjugating functional groups, is controlled and defined. Each valency platform molecule can comprise for example, 1 to 100, e.g, 1-50 attachment sites. For example, the valency platform molecule may comprise 4, 6, 8, 9, 0 12, 14A 15 1, 18 21, 24, 29, or 32 or more attachment sites. The valency platform molecule, for example, may comprise at least 4 attachment sites, or at least 6 attachment sites, or at least 8 attachment sites. The valency platform molecule in one embodiment has, for example, 4- 16, 4-32, 4-64, 8-32, 8-64, 12-32 or 12-64 attachment sites. The said attachment sites are in one preferred embodiment identical.
The number of carbamate linkages may vary. The valency platform molecule can include, for example, 2, 3, 4, 5, 6, 8, 9, 10, 11, 12, 15, 16, 18, 20, 24, 29, 32, 64, 100 or more carbamate linkages. The number of carbamate linkages can be, for example, 2-64, 2- 32, 2-16, 4-64, 4-32, 8-64, or 8-32. In a further embodiment, the number of carbamate linkages may be, for example, at least 2, at least 4, at least 6, or at least 8.
WO 00/34231 PCT/US99/29339 The valency platform molecule can comprise various combinations of the carbamate linkages and attachment sites such as reactive functional groups depending on the method of preparation, for example, 2-32, 2-16 carbamate linkages; and 4-64, 4-32 reactive functional groups.
Formula I In one embodiment, the present invention pertains to a valency platform having the structure of Formula I, as shown in Figure 1.
Formula I R- -J-CN- -G'-O-Z 2-y 1 In Formula I, n is a positive integer from 1 to 10, more preferably from 1 to 5. In one embodiment, n is a positive integer from 2 to 10, more preferably from 2 to 5. In one embodiment, n is 1. In one embodiment, n is 2. In one embodiment, n is 3. In one embodiment, n is 4.
In Formula I, y' is 1 or 2, and the subscript is therefore 1 or 0, respectively.
In Formula I, J independently denotes either an oxygen atom or a covalent bond no atom is present). When J is Rc is bound to the corresponding sidechain via a carbamate linkage When J is a covalent bond, Rc is bound to the corresponding sidechain via an amide linkage In Formula I, Rc denotes a "core group," that is, an organic group which forms the core of the valency platform, and to which one or more sidechains is attached. The valency WO 00/34231 PCT/US99/29339 of the core group is determined by n. If n is 1, then R c is monovalent; if n is 2, then Rc is divalent; ifn is 3, then Rc is trivalent; ifn is 4, then Rc is tetravalent, and so on.
In one embodiment, R c is a hydrocarbyl group consisting only of carbon and hydrogen) having from 1 to 20 carbon atoms, more preferably from 1 to 10 carbon atoms, still more preferably from 1 to 6 carbon atoms. In one embodiment, Rc is linear. In one embodiment, R c is branched. In one embodiment, Rc comprises a cyclic structure. In one embodiment, Rc is cyclic. In one embodiment, R c is fully saturated. In one embodiment, Rc is partially unsaturated. In one embodiment, R c comprises an aromatic structure. In one embodiment, R c is aromatic. In one embodiment, R c is -CH 2 In one embodiment, R c is -CHCH,-. In one embodiment, R c is -CHCHCH 2 In one embodiment, R c is:
CH
2 CH2--CH2--
CH
2 In one embodiment, R c is: In one embodiment, R c is an organic group consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms, more preferably from 1 to carbon atoms, still more preferably from 1 to 6 carbon atoms. In one embodiment, R c is derived from a polyalkylene oxide group. In one embodiment, R c is derived from a polyethylene oxide group. In one embodiment, R c is a divalent polyalkylene oxide group.
In one embodiment, R c is a divalent polyethylene oxide group. In one embodiment, Rc is a divalent polypropylene oxide group. In one embodiment, R c is: C H2 2- 0 CHO 2-CH2wherein p is a positive integer from 2 to about 200, more preferably from 2 to about 50, more preferably from 2 to about 20, more preferably from 2 to about 10, more WO 00/34231 PCT/US99/29339 preferably from 2 to about 6. In one embodiment, p is 2. In one embodiment, p is 3. In one embodiment, p is 4. In one embodiment, p is 5. In one embodiment, p is 6.
In one embodiment, Rc is an organic group consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms, more preferably from 1 to 10 carbon atoms, still more preferably from I to 6 carbon atoms. Examples of such core groups include, but are not limited to, those derive from the "core compounds" described below which consist only of carbon, oxygen, nitrogen, and hydrogen atoms.
In one embodiment, Rc is an organic group consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms, more preferably from 1 to 10 carbon atoms, still more preferably from 1 to 6 carbon atoms. Examples of such core groups include, but are not limited to, those derive from the "core compounds" described below which consist only of carbon, oxygen, sulfur, and hydrogen atoms.
In Formula I, G' denotes an organic "linker group." In one embodiment, G' is a hydrocarbyl group consisting only of carbon and hydrogen) having from I to carbon atoms, more preferably from 1 to 10 carbon atoms, still more preferably from I to 6 carbon atoms. In one embodiment, G' is linear. In one embodiment, G' is branched. In one embodiment, G' comprises a cyclic structure. In one emodiment, G' is cyclic. in one embodiment, G' is fully saturated. In one embodiment, G' is partially unsaturated. In one embodiment, G' comprises an aromatic structure. In one embodiment, G' is aromatic. In one embodiment, G' is divalent. In one embodiment, Rc is -(CH 2 wherein q is a positive integer from I to about 20, more preferably from 1 to about 10, more preferably from 1 to about 6, more preferably from 1 to about 4. In one embodiment, G' is -CH 2 In one embodiment, G' is -CH 2
CH
2 In one embodiment, G' is -CH 2
CH
2
CH
2 In one embodiment, G' is an organic group consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms, more preferably from 1 to carbon atoms, still more preferably from 1 to 6 carbon atoms. In one embodiment, G' is derived from a polyalkylene oxide group. In one embodiment, G' is a divalent WO 00/34231 PCT/US99/29339 polyalkylene oxide group. In one embodiment, G' is a divalent polyethylene oxide group.
In one embodiment, G' is a divalent polypropylene oxide group. In one embodiment, G' is: CH2-CH2-OYCH2 CH2p-1 wherein p is a positive integer from 2 to about 200, more preferably from 2 to about 50, more preferably from 2 to about 20, more preferably from 2 to about 10, more preferably from 2 to about 6. In one embodiment, p is 2. In one embodiment, p is 3. In one embodiment, p is 4. In one embodiment, p is 5. In one embodiment, p is 6.
In one embodiment, G' is an organic group consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms, more preferably from 1 to 10 carbon atoms, still more preferably from 1 to 6 carbon atoms.
In Formula I, RN denotes a nitrogen substituent, more specifically, an amino substituent. In one embodiment RN, if present, is hydrogen In one embodiment, RN, if present, is a linear or branched alkyl group having from 1 to 15 carbon atoms, more preferably from 1 to 10 carbon atoms, more preferably from 1 to 6 carbon atoms. In one embodiment, RN, if present, is an alkyl group comprising an alicyclic structure and having from 1 to 15 carbon atoms, more preferably from 1 to 10 carbon atoms, more preferably from 1 to 6 carbon atoms. In one embodiment, if present, is or comprises an aromatic group. In one embodiment, RN, if present, is or comprises a heteroaromatic group. In one embodiment, RN, if present, is or comprises an aromatic group having from 6 to 20 carbon atoms, more preferably from 6 to 15 carbon atoms, more preferably from 6 to 10 carbon atoms. In one embodiment, RN, if present, is or comprises a heteroaromatic group having from 3 to 20 carbon atoms, more preferably from 3 to 15 carbon atoms, more preferably from 3 to 10 carbon atoms. In one embodiment, RN is selected from the group consisting of and -CH,CH 3 In Formula I, Z denotes a terminal group, which is independently selected from the group consisting of: -H (which yields a terminal alcohol group), -C(=O)ORc
A
(which WO 00/34231 PCT/US99/29339 yields a terminal carbonate group), -C(=O)RES" (which yield a terminal ester group), and -C(=O)NRAR (which yields a terminal carbamate group).
In the above formulae, each RCA R is a carbonate substituent or an activated carbonate substituent. Many carbonate substituents are well known in the art, including, for example, organic groups comprising from 1 to about 20 carbon atoms, including, for example, primary, secondary, and tertiary, substituted and unsubstituted, alkyl and aryl groups having from 1 to about 20 carbon atoms. Other examples of carbonate groups include those described herein for RN. Still other examples of carbonate groups include those described below for activated carbonates.
In the above formulae, each REST E R is an ester substituent or an activated ester substituent. Many ester and activated ester substituents are well known in the art, including, for example, organic groups comprising from 1 to about 20 carbon atoms, including, for example, primary, secondary, and tertiary alkyl and aryl groups having from 1 to about 20 carbon atoms. Other examples of carbonate groups include those described herein for RN. Examples of RESE include, but are not limited to, -CH 3 (to give an acetate group), -CH,SH (to give a mercaptoacetate group), and -CH 2
,CH
5 to give a benzoate group).
In one embodiment, Z is -NR'AR and denotes an amino group. The amino group may be unsubstituted, in which case, RA and RB are both hydrogen -NRARB is -NH 2 The amino group may be monosubstituted, in which case RB is hydrogen -NRARB is NHRA). The amino group may be disubstituted. In this case, RA and RB may be separate moieties, as in -NRARB, or RA and RB may be covalently linked together and form a divalent substituent, denoted R A -NRARB is -NRAB). Thus, in one embodiment, each group NRARB is independently selected from the group consisting of: -NH 2 -NHRA, -NHRARB, and -NRAB, wherein each monovalent RA and RB and each divalent R A is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group. In one embodiment, each group -NRARB is independently WO 00/34231 PCT/US99/29339 selected from the group consisting of: -NHRA, -NHRARB, and When not hydrogen, RA, RB, and RB, preferably comprise a reactive conjugating functional group.
The term "reactive conjugating functional group" is used herein to refer to reactive functional groups which facilitate conjugation, for example, with a biologically active molecule. Examples of such reactive conjugating functional groups include, but are not limited to, the following:
-OH
-SH
-NCO
-NCS
NHRsuB
RALKX
RALKHgX 0
-C-H
0
-C-X
-C-RB
0
-C-CH
2
X
0 -C-CR =C(R 2 0
-O-C-X
O
0
-C-OH
O
C-ORESTER
0 0
-C-O-C-R"
WO 00/34231 PCT/US99/29339
NR
SUB
O II C-O-C-NHR s uB O H H -C-N-N-Rsu H H -N-N-Rsu 0
C
-N
'C
0
NRSUB
C--OR
S UB
O
0
-S-ORALKX
II
0 0
II
-S-X
II
0
CRB=C(RB)
2
-O-NH
2 0
II
-NH-C-NH-NH
2
NH
2
SH
I I
-CH-CH
2 In the above reactive conjugating functional groups, each X is independently F, Cl, Br, I, or other good leaving group; each RK is independently an alkyl group, such as a linear or branched alkyl or cycloalkyl group having from 1 to about 20 carbon atoms; each Rs" is independently H or an organic group, such as a linear or branched alkyl group, or a cycloalkyl group having from 1 to about 20 carbon atoms, an aryl group having from 6 to about 20 carbon atoms, or an alkaryl group having from 7 to about 30 carbon atoms; each REER is independently an organic group having from 1 to about 20 carbon atoms, including, for example, primary, secondary, and tertiary alkyl and aryl groups having from 1 to about 20 carbon atoms; and, each RB is independently a organic group, such as an WO 00/34231 PCTIUS99/29339 organic group comprising 1 to 50 atoms selected from the group consisting of C, H, N, O, Si, P, and S.
In a preferred embodiment, the reactive conjugating functional group is an amino group or a protected amino group. In one embodiment, the group -NRARB comprises an amino group, and has the structure: -N N-H In one embodiment, the group -NRARB comprises a protected amino group, and has the structure: 0 -N N-C-o-H which is often conveniently abbreviated using "CBZ" to denote "carbobenzyloxy": -N N-CBZ In one embodiment, the group -NRARB comprises a hydrobromide salt of an amino group, and has the structure: -N NH.HBr In one embodiment, the group -NR^R comprises a haioacetyl group (where X denotes Cl, Br, or and has the structure: 0
II
-N N-C-CH 2
-X
In one embodiment, the group -NRARB comprises an amino group, and has the structure:
CH
2
-)-NH
2 wherein n is a positive integer from 1 to about 20, preferably from 1 to about preferably from 1 to about 5. In one embodiment, the group -NRAR comprises a protected amino group, and has the structure: WO 00/34231 PCT/US99/29339 O CH 3 II
I
-NH-CH
2
CH
2
-NH-C-O-C-CH
3
I
CH
3 which is often conveniently abbreviated using "BOC" to denote "tertbutoxycarbonyl":
-NH-CH
2
CH
2
-NH-BOC
In one embodiment, the group -NRAR B comprises an amino group, and has the structure: S--NH CH 2
CH
2 0CH 2 CH2-NH 2 wherein n is a positive integer from 1 to about 20, preferably from 1 to about preferably from 1 to about Examples of valency platforms having the structure of Formula I are shown in Figures 2, 3, and 7. In Figure 2, the top structure has n=l and y'=l and the bottom structure has n=2 and In Figure 3, the top structure has n=l and y'=2 and the bottom structure has n=2 and In Figure 7, the structure has n=4 and The number of terminal groups -NRAR is given by When is 4, the structure may conveniently be referred to as a "tetrameric" structure. When is 8, the structure may conveniently be referred to as a "octameric" structure. When is 16, the structure may conveniently be referred to as a "hexadecameric" structure.
Examples of compounds having the structure of Formula I where Z is -H include, but are not limited to, compounds 21, 24, 27a, 29, 32, and 38, described in the Examples below.
Examples of compounds having the structure of Formula I where Z is C(=O)ORcA" R include, but are not limited to, compounds 22, 25, 27, 30, 33, and 39 described in the Examples below.
WO 00/34231 PCT/US99/29339 Examples of compounds having the structure of Formula I where Z is -NRAR" include, but are not limited to, compounds 23, 23a, 26, 26a, 31, 31a, 34, 34a, 40, 41, 42, and 51, described in the Examples below.
Formula II In one embodiment, the present invention pertains to a valency platform having the structure of Formula II, as shown in Figure 1.
Formula II o o II II Rc- G 2
-Z
SRN 2-y y In Formula II, n, R c J, RA, RB, RN, G' and Z are as defined above for Formulae I. In Formula II, y 2 and G 2 are as defined above for y' and respectively.
Examples of valency platforms having the structure of Formula II are shown in Figures 4 and 5. In Figure 4, the top structure has n=1, and y 2 =l and the bottom structure has n=l, and y 2 In Figure 5, the structure has n=2, and y 2 The number of terminal groups -NRAR is given by "n*y'*y 2 When "n*y'*y 2 is 4, the structure may conveniently be referred to as a "tetrameric" structure. When "n*yl*y 2 is 8, the structure may conveniently be referred to as a "octameric" structure. When "n*y'*y 2 is 16, the structure may conveniently be referred to as a "hexadecameric" structure.
Examples of compounds having the structure of Formula II where Z is -H include, but are not limited to, compounds 35, 43a, and 49a, described in the Examples below.
WO 00/34231 PCT/US99/29339 Examples of compounds having the structure of Formula II where Z is C(=O)ORc' include, but are not limited to, compounds 35a, 43, and 50, described in the Examples below.
Examples of compounds having the structure of Formula II where Z is -NRARB include, but are not limited to, compounds 14, 15, 20, 20a, 28, 28a, 36, 36a, 44, 44a, and described in the Examples below.
Formula III In one embodiment, the present invention pertains to a valency platform having the structure of Formula III, as shown in Figure 1.
Formula III 0 0 0 RC--J-C-N- 2
G-O-Z
[RN [NN y3] R 22YyY 2- 1 n^ n In Formula III, n, RC, J, RA, RE, y 2 RN, G 2 and Z are as defined above for Formulae I and II. In Formula III, y 3 and G 3 are as defined above for y' and G', respectively.
Examples of a valency platform having the structure of Formula III is shown in Figure 6. This structure has n=2, y 2 and y 3 The number of terminal groups -NRARB is given by "n*y'*y 2 *y 3 When "n*y'*y*y 3 is 4, the structure may conveniently be referred to as a "tetrameric" structure. When "n*y'*y 2 *y 3 is 8, the structure may conveniently be referred to as a "octameric" structure. When "n*y*y 2 *y 3 is 16, the structure may conveniently be referred to as a "hexadecameric" structure.
WO 00/34231 PCT/US99/29339 Formulae IV, V, and VI In one embodiment, the present invention pertains to a valency platform having the structure of Formula IV, V, or VI, as shown in Figure 8.
Formula IV o r ii RC- -J-C-N-G O-Z S I. y
RN
n Formula V o o Rc- -O-C-N-G2 O-Z IN I I RN RN y 2 -Rn through III. Unlike the compounds of Formulae I through III, which may have branch pots at nitrogen atoms, compounds of Formulae IV through VI may have branch points at a G group, for example, at G 2 or G 3 and there may be one, two, three, or more R J-C-N-G
-C-N-G
2 G O-Z branches, for example, y, y, or y branches.
I15 For Formulae IV through VII, R
A
G
2 and G are as defined a bove fo r Formulae I through III. Unlike the compounds of Formulae I through III, which may have branch points at nitrogen atoms, compounds of Formulae IV through VI may have branch points at a G group, for example, at or and there may be one, two, three, or more branches, for example, y y or y' branches.
15 For Formulae IV through VII, and G 3 are similar to G 2 and G' for Formulae I through III. In a preferred embodiments, these groups are trivalent, tetravalent or higher. In one embodiment,
G
2 and G 3 are selected from the group consisting of: WO 00/34231 PCT/US99/29339
CH
2
CH
2
CH
2 -CH -C-CH -C -CHCH 3 2- CH- and CH 2 Also, for Formulae IV through VI, y 2 and y 3 are positive integers from 1 to about 10, more preferably from 1 to 5, more preferably from 1 to 4, more preferably from 1 to 3, more preferably from 1 to 2.
Examples of compounds having the structure of Formula IV where Z is -H include, but are not limited to, compound 46, described in the Examples below.
Examples of compounds having the structure of Formula IV where Z is C(=O)ORc'^ include, but are not limited to, compound 47, described in the Examples below.
Examples of compounds having the structure of Formula V where Z is -H include, but are not limited to, compound 47a, described in the Examples below.
Examples of compounds having the structure of Formula V where Z is C(=U)OKR" include, but are not limited to, compound 48, described in the Examples below.
Examples of compounds having the structure of Formula V where Z is -NRAR include, but are not limited to, compounds 48a, 48b, and 48c, described in the Examples below.
In general, the number of termini may be calculated as the product of n, y 2 y 3 etc., as discussed above. In one embodiment, this product is 2 or more. In one embodiment, this product is more than 2. In one embodiment, this product is more than 3.
In one embodiment, this product is 4. In one embodiment, this product is 6. In one WO 00/34231 PCT/US99/29339 embodiment, this product is 8. In one embodiment, this product is 16. In one embodiment, this product is 32.
In some embodiments, the valency platform molecule may be described as "dendritic," owing to the presence of successive branch points. Dendritic valency platform molecules possess multiple termini, typically 4 or more termini. In one embodiment, the valency platform molecule is dendritic and has 4 termini, such as, for example, compounds 23a, 26a, 31a, 34a, 42a, described in the examples below. In one embodiment, the valency platform molecule is dendritic and has 8 termini, such as, for example, compounds 15, 28a, 36a, 45, 48c and 51, described in the examples below. In one embodiment, the valency platform molecule is dendritic and has 16 termini.
Note that Formulae I through VI are intended to encompass both "symmetric" and "non-symmetric" valency platforms. In one embodiment, the valency platform is symmetric. In one embodiment, the valency platform is non-symmetric. For example, each of the groups which are pendant from the core group, R c may be the same or may be independently different.
"Higher generation" valency platforms 4th generation, 5th generation) are also Vu contemUpllatL whic have corresponding Ilfrmula. For examplel, .4th generation valen platforms would have G 4 and y 4 5th generation valency platforms would further have G and yS, and so on for successive generations. Also, "hybrid" valency platforms are contemplated, which would include linkages of the sort found in Formulae I through III as well as linkages of the sort found in Formulae IV through VI.
B. Preparation of Valency Platforms In one embodiment, the valency platforms of the present invention may be prepared from "core" compounds which comprise one or more (say, jo) hydroxy groups -OH).
For example, the hydroxyl groups on the core are converted to active carbonate derivatives, such as activated carbonate esters (for example, apara-nitrophenylcarbonate ester) and WO 00/34231 PCT/US99/29339 subsequently reacted with a polyhydroxyamine compounds having j' hydroxy groups to provide a "first generation" carbamate with j' hydroxyl groups for each original hydroxyl group, for a total ofj°*j hydroxyl groups. The resulting hydroxy groups may then also be converted to activated carbonate derivatives, such as activated carbonate esters and subsequently reacted with a polyhydroxyamine compound having j 2 hydroxy groups to provide a "second generation" carbamate with j 2 hydroxyl groups for each j' hydroxyl group, for a total ofj°*j'*j 2 hydroxyl groups. In this way, a dendritic structure may be constructed. The process can be terminated at any "generation" by treating the terminal activated carbonate derivatives, such as activated carbonate esters, with an appropriately functionalized compound (for example, an mono-protected diamine) to provide whatever functionality is desired at the termini.
In one embodiment, the valency platforms of the present invention may be prepared from a "segmental approach" in which "segments" are independently synthesized and subsequently attached to a "core" group.
In another embodiment, an alternative, more efficient "core propagation" process has been developed in which a core group is modified in an iterative process to generate a dendritic structure. The core propagation approach involves fewer steps and is preferred over the segmental approach, In another embodiment, the valency platforms of the present invention may be prepared using solid phase synthesis from a hydroxyl containing resin. Such an embodiment is illustrated in Figure 20. A hydroxyl group attached to a solid phase by a cleavable linker provides a way of building a dendrimeric scaffold using solid phase synthesis. The ability to prepare scaffolds on the solid phase can be particularly useful for the rapid synthesis of dendrimeric platforms with minimal purification. Also, solid phase dendrimeric platforms can be used to generate combinatorial libraries of multivalent compounds.
WO 00/34231 PCT/US99/29339 In one preferred "core propagation" approach, the synthesis typically begins with an alcohol containing "core compound." In principle, any hydroxyl-containing compound can be used. Examples of alcohol containing "core compounds" having one hydroxyl group -OH) include, but are not limited to: methanol,
CH
3
-OH
ethanol,
CH
3
-CH
2
-OH
propanol,
CH
3
-CH
2
-CH
2
-OH
isopropanol,
OH
CH
3
-CH-CH
3 methoxypolyethylene glycol,
CH
2
CH
2 0 H n Other examples of alcohol containing "core compounds" having one hydroxyl group -OH) include, but are not limited to, mono-hydroxylamines, such as those described below, for which the amino group may be in a protected form, for example, using a BOC or CBZ protecting group.
Examples of alcohol containing "core compounds" having two hydroxyl groups -OH) include, but are not limited to: ethylene glycol,
HO-CH
2 CH2-OH diethylene glycol (also referred to as DEG),
HO-CH
2
-CH
2
-O-CH
2 -CH2-OH triethylene glycol (also referred to as TEG),
HO-CH
2
-CH
2 -O-CH2-CH2-O-CH2-CH2-OH WO 00/34231 PCT/US99/29339 tetraethylene glycol, HO- CH 2
-CH
2
O-H
pentaethylene glycol, HO CH 2
-CH
2 -0 H hexaethylene glycol, HO( CH 2
-CH
2 -0 -H polyethylene glycol (also referred to as PEG), where n is typically from 1 to about 200, HO- CH 2
CH
2 0 )H n 1, 4 -dihydroxymethylbenzene,
HOCH
2
CH
2 0H Other examples of alcohol containing "core compounds" having two hydroxyl groups -OH) include, but are not limited to, primary or secondary amines having two hydroxyl groups, such as those described below. Again, the amino group may be in a protected form, for example, using a BOC or CBZ protecting group.
Examples of alcohol containing "core compounds" having three hydroxyl groups -OH) include, but are not limited to: phluoroglucinol (also known as 1,3,5-trihydroxybenzene),
OH
HO'
OH
WO 00/34231 PCT/US99/29339 1,3,5-trihydroxymethylbenzene,
CH
2
OH
HOCH
2
CHOH
1,3,5-trihydroxycyclohexane,
OH
HO OH Other examples of alcohol containing "core compounds" having three or more hydroxyl groups -OH) include, but are not limited to, primary or secondary amines having three hydroxyl groups, such as those described below. Again, the amino group may be in a protected form, for example, using a BOC or CBZ protecting group.
Examples of alcohol containing "core compounds" having four hydroxyl groups -OH) include, but are not limited to: pentaerythritol,
CH
2
OH
I
HOCH
2
-C-CH
2
OH
CH
2
OH
Further examples of alcohol containing "core compounds" include, but are not limited to, those which comprise a sulfhydryl group which may be protected, for example, with a trityl protecting group as -S-Tr, that is, -S-C(C 6
H
5 3 or as a disulfide as Examples of core groups which have a protected sulfhydryl group include, but are not limited to, the following: Tr-S-CH 2
CH
2
-OH
HO-CH
2 CH2-S-S-CH 2
CH
2
-OH
WO 00/34231 PCT/US99/29339
CH
3 CH3-C-S-S- CH 2
-CH
2 -O H
CH
3 where n is from 1 to about 200, preferably from 1 to about In addition, hydroxyl groups on solid phase synthesis resins can be used as core groups to provide dendrimeric carbamate residues on solid phase which can be used to boost the valence of the resin or cleaved off the resin. For example, a Wang resin of the following form may be used: In one embodiment, a hydroxy containing core group may be prepared from a corresponding carboxylic acid compound or halocarbonyl compound:
HN(CH
2 CH20H) 2 pyridine or Et 3 N CH 2
CH
2
OH
R-COOH R-COX R-CO-N
CH
2 CH2OH Core compounds which possess amino or sulfhydryl groups, which may be protected or unprotected, may be used to covalently attach the resulting valency platform m ~ppnillp tA nth'r -l'o .f +e 4- molecle to oth.er molecules -of interet, via the core group rather than via thie irmini, using conjugation methods such as those described herein.
In one step, the hydroxyl groups of the alcohol containing core group are converted to active carbonate derivatives. The active carbonate derivative in one embodiment has the formula: 0 0-where X is a leaving group such as C1, imidazole or thiolate.
where X is a leaving group such as Cl, imidazole or thiolate.
WO 00/34231 PCT/US99/29339 The hydroxyl groups of the alcohol can be converted to active active carbonates by reaction of the hydroxyl groups of the alcohol containing core group with a phosgene equivalent. Phosgene equivalents with appropriate reactivity can be selected. The phosgene equivalent has, for example, the structure X,(CO)X 2 where X, and X, are both leaving groups. X, and X 2 each independently can be chosen from typical leaving groups in acylation chemistry such as alkoxide, thiolate, halide, and imidazole. In one preferred embodiment, the phosgene equivalent is 4-nitrophenylchloroformate. In another embodiment, the phosgene equivalent is carbonyldiimidazole. Other exemplary phosgene equivalents include phosgene, N,N'-succinimidylcarbonate, succinimidyl 2,2,2-trichloroethylcarbonate, bis-4-nitrophenylcarbonate, triphosgene, 2 2 2 -trichloroethylchloroformate, 4-nitrophenylchloroformate, phenylchloroformate, N-hydroxysuccinimidylchloroformate, trichloromethylchloroformate, ethylchlorothiolformate, di-(1-benzotriazolyl)carbonate, and 4 -nitrophenylsuccinimidylcarbonate.
Thus, in one embodiment, to form an active carbonate derivative in the synthesis of the valency platform molecule, an alcohol is reacted with the phosgene equivalent to form the activated carbonate by displacing X, is chloride in one preferred embodiment. The active carbonate derivative is used to acylate an aminoalcohol on the nitrogen, forming the carbamate bond, then the phosgene again is added to convert the hydroxyl group to another active carbonate derivative. An example of an active carbonate derivative is nomnound 39r shown in Figure 21.
In one embodiment, the active carbonate derivative is a carbonate ester. The terms "carbonate" and "carbonate ester" are used herein in the conventional sense and relate to species which comprise the following structure: 0 wherein R' denotes a carbonate group, such as an organic group having from 1 to carbon atoms. The terms "activated carbonate" and "activated carbonate ester" are used herein to refer to carbonates for which R' is an activating group, and for which the moiety O-R' forms a good leaving group. A particularly preferred class of activated carbonate WO 00/34231 PCT/US99/29339 esters include, but are not limited to para-nitrophenyl carbonate ester compounds of the formula:
O
-c- Such "PNP" activated carbonate esters may readily be formed from the corresponding alcohol, R-OH by reaction with PNP chloroformate in the presence of pyridine (CsH 5 N) in methylene chloride (CH 2
C
2 0 R-OH CI-c-o-
NO
2
O
pyridine, CH 2
CI
2 R-O-C-
NO
2 Examples of other activated carbonate groups include, but are not limited to, the following: F F 0
II
O-C--O
/F
F F 0o 11
-O-C-O-N
0 0
-O-C-O-CH
2 In another step, the activated carbonate ester is converted to the corresponding carbamate. The above PNP activated carbonate esters are readily converted to the corresponding carbamates by reaction with an amine. The dendritic structure may be extended by employing a primary or secondary amine having j' hydroxy groups. In this WO 00/34231 PCT/US99/29339 way, each original hydroxy group, which led to an activated carbonate ester group, then leads to j' hydroxy groups.
For example, the PNP activated carbonate ester may be reacted with a primary or secondary dihydroxyamine. Examples of primary and secondary amines having two hydroxyl groups include, but are not limited to: diethanolamine,
CH
2
CH
2
-OH
HN
CH
2
CH
2
-OH
bis(diethyleneglycol)amine (compound 7),
(CH
2
CH
2 2
-H
HN\(CH
2
CH
2 2
-H
bis(triethyleneglycol)amine,
(CH
2
CH
2
O)
3
-H
HN\(CH
2
CH
2 3
-H
bis(tetraethyleneglycol)amine,
(CH
2
CH
2 4
-H
HN\(CH
2
CH
2 0) 4
-H
bis(pentaethyleneglycol)amine,
(CH
2
CH
2 5
-H
HN\(CH
2
CH
2 5
-H
bis(hexaethyleneglycol)amine (compound
(CH
2
CH
2 6
-H
HN\(CH
2
CH
2 6
-H
bis(polyethyleneglycol)axnine (where n is from 1 to about
(CH
2
CH
2
)-H
HN\(CH
2
CH
2 0)-H WO 00/34231 diisopropanolam-ine,
OH
CH-CH"
2
-H
3
HN
CH-CH
2
-CH
3
OH
serinol (also known as 2-amino-1,3-propanediol),
NH
2
HO-CH
2 -C.H-CHt 2
-OH
2-amino-2-methyl- 1,3-propanediol,
NH
2
HO-CH
2
-CH-CH
2
-OH
C;H
3 2-amino-2-ethyl- 1 ,3-propanediol,
NH
2
HO-CH
2
-CH-CH
2
-OH
tris(hydroxymethyl)aminomethane,
CH
2 0H
HOCH
2
-C;-NH
2
CH
2
OH
CH
2
CH
2
OH
HOCH
2
CH
2
-C-NH
2
CH
2
CH
2
OH
1 -amino- I -deoxysorbitol (also referred to as glucamine),
NH
2 H -OH HO -H H :OH H OH
CH
2 0H PCT/US99/29339 WO 00/34231 WO 00/423 1PCT/US99/29339 N-methyl-D-glucamine,
NHCH
3 H -OH HO -H H OH H OH CHt 2
OH
In one step, the activated carbonate ester is converted to the corresponding carbamnate using a monohydroxyamine to maintain valency from one generation to the next yet impart unique properties such as arm length, steric bulk, solubility, or other physical properties. Examples of such monohydroxyamines include, but are not limited to: 3-pyrrolidinol,
OH
NH
2-(hydroxymethyl)pyrrolidine, O -CH 2
-OH
NH
3 -hydroxypiperidine (also referred to as 3 -piperidinol),
OH
NHr 3 -(hydroxymethyl)piperidine, CN
HTCH
2
-OH
2 -(hydroxymethyl)piperidine, aNH CH 2
-OH
WO 00/34231 PCT/US99/29339 4-(2-hydroxyethyl)piperidine,
CH
2
CH
2
OH
NH
4-piperidinol,
OH
NH
2 ,2,6,6,-tetramethyl-4-piperidinol,
OH
CH
3
CH
3
CH
3 NH CH 3 mono-amino-oligoethylene glycol (where n is from 1 to about
H
2 N{ CH 2
CH
2 O- H mono-amino-polyethylene glycol (where n is from 1 to about 200),
H
2 N-
CH
2 CH20o n
H
In one step, the activated carbonate ester is converted to the corresponding carbamate using a primary or secondary amine which acts as a "terminating" amine. In one embodiment, a mono-protected diamine is employed. In a preferred embodiment, the terminating amine is a mono-CBZ protected piperazine, since this compound provides a convenient secondary amine handle for adding functionality by acylation with other reactive groups such as haloacetyl, maleimidoyl, etc. depending on what is desired at the Nterminus. For example, reaction with mono-CBZ-protected piperazine in the presence of triethylamine ((CH 3
CH
2 3 N) in methylene chloride (CH 2
CI
2 yields the CBZ-protected piperazine carbamate, which can then be converted to a haloacetyl group: WO 00/34231 WO 0034231PCTIUS99/29339 H-N N-CBZ
(CH
3
CH
2 3 N CB O-C-N 0
N-CH
2 Ethylenediamine and other diamines can function similarly. Examples of preferred terminating amines include, but are not limited to those shown below, as well as monoprotected mono-CBZ-protected) forms thereof: piperazine, H-N N-H ethylenediamine,
H
2
N-CH
2
-CH
2
-NH
2 propylenediamine,
H
2
N-CH
2
-CH
2
-CH
2
-NH
2 alkylenedianiines (where n is an integer from 1 to about
H
2
CH
2 2 N,N'-dimethylethylenediamine,
CH
3
-NH-CH
2 -CH2-NH-CH 3 co,-diaminopolyethyleneglycol (where n is an integer from 1 to about 200, preferably from 1 to about
H
2
N#CH
2
CH
2
O.).CH
2
CH
2
-NH
2 WO 00/34231 PCT/US99/29339 A particularly preferred terminating amines is mono-CBZ-protected piperazine: 0 H-N
N-C-O-CH
2 In principle any primary or secondary amine containing compound which contains a reactive conjugating group (such as those described above) or a biologically active molecule can be used to terminate the dendrimer and provide the terminal functionality that is desired. For example, amino alcohols would provide terminal hydroxyl groups, amino aldehydes would provide terminal aldehyde groups, amino acids would provide terminal carboxylic acids, and aminothiols would provide terminal thiols. Methods for the introduction of other reactive conjugating functional groups, such as those described above, as terminating groups are well known to those of skill in the art.
C. Valency Platform Conjugates, Methods of Preparation, and Uses Thereof In one embodiment, valency platform molecules are provided which act as scaffolds to which one or more molecules may be covalently tethered to form a conjugate. Thus, in another aspect, the present invention pertains to valency platform conjugates.
In one embodiment, the valency platform is covalently linked to one or more biologically active molecules, to form a conjugate. The term "biologically active molecule" is used herein to refer to molecules which have biological activity, preferably in vivo. In one embodiment, the biologically active molecule is one which interacts specifically with receptor proteins.
In one embodiment, the valency platform is covalently linked to one or more oligonucleotides, to form a conjugate. In one embodiment, the valency platform is covalently linked to one or more peptides, to form a conjugate. In one embodiment, the valency platform is covalently linked to one or more polypeptides, to form a conjugate. In one embodiment, the valency platform is covalently linked to one or more proteins, to form WO 00/34231 PCT/US99/29339 a conjugate. In one embodiment, the valency platform is covalently linked to one or more antibodies, to form a conjugate. In one embodiment, the valency platform is covalently linked to one or more saccharides, to form a conjugate. In one embodiment, the valency platform is covalently linked to one or more polysaccharides, to form a conjugate. In one embodiment, the valency platform is covalently linked to one or more epitopes, to form a conjugate. In one embodiment, the valency platform is covalently linked to one or more mimotopes, to form a conjugate. In one embodiment, the valency platform is covalently linked to one or more drugs, to form a conjugate.
In one embodiment, the biological molecule is first modified to possess a functionalized linker arm, to facilitate conjugation. An example of such a functionalized linker arm is a polyethylene glycol disulfide, such as, for example: S CH3
CH
3 One advantage of the valency platforms of the present invention is the ability to introduce enhanced affinity of the tethered biologically active molecules for their binding partners. Another advantage of the valency platforms of the present invention is the ability to facilitate crosslinking of multiple ligands, as is useful in B ce- l tolerance. Another advantage of the valency platforms of the invention is the ability to include functionality on the "core" that can be independently modified to enable the preparation of conjugates which can be tailored for specific purposes.
Conjugates of the valency platform molecule and one or more biologically active molecules may be prepared using known chemical synthetic methods. As discussed above, the termini of the valency platform molecule the RA, and/or R A of the group NRARB, as discussed above) preferably comprise a reactive conjugating functional group, and this reactive functional group may be used to couple the valency platform to the desired biologically active molecule.
WO 00/34231 PCT/US99/29339 In one embodiment, the reactive haloacetyl group may be used to couple the valency platform to a biologically active molecule which possesses one or more reactive conjugating functional groups which are reactive towards the haloacetyl group, and which react to yield a covalent linkage.
For example, if the biologically active molecule is a protein which has one or more free amino groups -NH2), the two groups may be used to form the conjugate: 0
II
valency platform-C-CHzX H 2 N-protein 0
II
S valency platform-C-CH 2 -NH-protein In another example, if the biologically active molecule is a protein which has one or more free thiol groups -SH) or sulfide groups the two groups may be used to form the conjugate: 0
II
valency platform-C- CH 2 X RS-protein 0
II
valency platform- C -CH 2 S protein In another embodiment, a terminal maleimidoyl group may be used to couple the valency platform to a biologically active molecule which possesses one or more reactive conjugating functional groups which are reactive towards the maleimidoyl group, and which react to yield a covalent linkage.
For example, if the biologically active molecule is a protein which has one or more free thiol groups -SH) or sulfide groups the two groups may be used to form the conjugate: WO 00/34231 PCT/US99/29339 valency platform-N RS-protein 0 O valency plaform-N S-protein 0 D. Examples Several embodiments of the present invention are illustrated in the Examples below, which are offered by way of illustration and not by way of limitation.
Example 1 Examples of Synthesis of Amine Diols A chemical scheme for the preparation of HEGA (bis-hexaethyleneglycolamine) is shown in Figure 10. One hydroxy terminus ofhexaethylene glycol is first converted to a tosyl group (compound which is then converted to a bromo group (compound The resulting compound is then reacted with tosylamide to yield tosylated bishexaethyleneglycolamine (compound The tosyl group is then removed to yield the desired bis;-hexaethyleneglyc.la..mi;e (cmp.cnd 4).
A chemical scheme for the preparation of DEGA (bis-diethyleneglycolamine) is also shown in Figure 10. Chlorodiethylene glycol (compound 5) is reacted with aminodiethylene glycol (compound 6) to yield the desired bis-diethyleneglycolamine (compound 7).
Compound 1 Hexaethyleneglycol mono-tosylate g (88.5 mmol) of hexaethyleneglycol was stirred at 0°C in 200 mL of CH 2
CI
2 and 14.3 mL of pyridine (177 mmol; 2 eq.) was added to the mixture followed by 17.4 g WO 00/34231 PCT/US99/29339 (88.5 mmol) of tosylchloride. The reaction mixture was stirred at room temperature for 24 hours and partitioned between 400 ml of IN HCI and 200 ml of CH 2 Cl 2 The organic layer was dried over MgSO 4 filtered, and concentrated to provide 31 g of a light yellow oil.
Purification by silica gel chromatography
(CH
2 CI2/MeOH) provided 15.32 g of 1 as a light yellow oil: 'H NMR (CDCl 3 6 2.45 3H), 3.55-3.75 22H), 4.15 2H), 7.35 2H), 7.80 2H); HRMS (FAB) calculated for C, 1
H
33 0 9 S 437.1845. Found: 437.1834.
Compound 1 Hexaethyleneglycol mono-tosylate g of HEG (177 mmol) was dissolved in 300 ml of CH 2 C1 2 and 7.2 ml (88 mmol) ofpyridine was added at room temperature. 17.4 g (88 mmol) of tosylchloride was added to the mixture in four batches, each 2 hours apart. After the last addition, the mixture was stirred for 16 hours. The reaction mixture was concentrated, 150 mL of 0.1 M HCI was added, and the mixture was extracted twice with hexane to remove excess tosylchloride.
The aqueous layer was washed with three portions of ether to remove di-tosylate. This was carefully monitored by TLC to avoid any removal of mono-tosylate. The aqueous layer was then extracted with portions of CH 2 CI, The combined organic layers were washed with 0.1M HCI. dried over MgSO., filtered, and concentrated to give 23.6 g of compound 1.
Compound 2 Hexaethyleneglycol mono-bromide Compound 1 (18 g, 41.3 mmol) was dissolved in 120 mL of acetone and 10.8 g of LiBr (124 mmol) was added. The mixture was stirred at 60 0 C for 2 hours, the reaction mixture was allowed to cool to room temperature, and 500 mL of H 2 0 was added. The mixture was extracted with 2x 500 mL of CH 2 CI,. The combined organic layers were dried over MgSO 4 filtered, and concentrated to give 13.7 g of compound 2 as a light WO 00/34231 PCT/US99/29339 yellow oil: 'H NMR (CDC 3 5 3.50 2H), 3.60-3.75 20H), 3.83 2H); HRMS (FAB) calculated for C, 2
H
2 6 BrO 6 345.0913. Found: 345.0922.
Compound 3 N,N-bis-hexethyleneglycol-tosylamide Compound 2 (3.5 g, 9.8 mmol) and 0.84 g (4.9 mmol) oftosylamide were dissolved in 35 mL of CH 3 CN. Potassium carbonate (1.63 g (11.8 mmol), which had been dried in the 100 0 C oven, was added, and the mixture was refluxed for 18 hours under N 2 The mixture was allowed to cool to room temperature, and 150 mL of H 2 0 was added. The mixture was extracted with 3 X 150 mL of CHCl2. The combined organic layers were washed with HO0, dried (MgSO 4 filtered, and concentrated to give 3.3 g of a light yellow oil. Purification by silica gel chromatography (CH,C1, /MeOH) provided 2.7 g of compound 3 as a light yellow oil: 'H NMR (CDCI 3 6 2.45 3H), 3.35 4H), 3.55-3.8 44H), 7.27 2H), 7.69, 2H); HRMS (FAB) calculated for C 3
,H
57 CsNO, 4 S (M+Cs): 832.2554. Found: 832.2584.
Compound 4 N,N-bis-hexethyleneglycol-amine Compound 3, (2.74 g) was dissolved in 4 mL of dry THF and transferred to a threeneck flask equipped with a Dewar-condenser. This was stirred at -78 0 C as 100 mL ofNH 3 was condensed into the mixture. Approximately 1-2 g of Na was added to the mixture at -78 0 C in small portions until the dark blue color persisted. The cooling bath was removed, and the mixture was then stirred at reflux for 30 minutes. Cooling at -78 0 C was continued, and the reaction was carefully quenched with glacial acetic acid until all the blue color disappeared. The NH, was allowed to evaporate, and the white solid was dried under vacuum to yield compound 4. This material was used as is in subsequent steps assuming a 100% yield.
WO 00/34231 PCT/US99/9339 Compound 7 DEGA (bis-diethyleneglycolamine) Compound 7 was prepared according to an existing literature procedure as shown below (Bondunov et al., J. Org. Chem. 1995, Vol. 60, pp. 6097-6102). 33.8 g (321 mmol) of aminodiethyleneglycol (compound 9.4 g 88.3 mmol) of Na 2
CO
3 200 mL of toluene, and 10.0 g (80.3 mmol) of chlorotriethyleneglycol (compound were refluxed with a Dean-Starke trap to remove water for 48 hours. The mixture was allowed to cool then filtered and concentrated. The resulting 45.8 g of material was vacuum distilled (bp 153- 158 0 C, 0.1 Torr) to yield 12.0 g of compound 7.
Example 2 Synthesis of Octamer of HEGA/TEG Using Segmental Approach A chemical scheme for the preparation of an octamer of HEGA/TEG is shown in Figures 11A and 11B. Compound. The bis-hexaethyleneglycolamine (compound 4) was reacted with di-tert-butyldicarbonate to yield the N-BOC compound (compound which was then reacted with para-nitrophenylchloroformate to yield the paranitrophenylcarbonate compound (compound The para-nitrophenylcarbonate (PNP) group was then converted to a carbamate group by reaction with mono-CBZ-protected piperazine, yielding compound 10. The BOC group was removed using trifluoroacetic acid to yield compound 11. Compounds 9 and 11 were then reacted together to form a "onesided" dendritic compound (compound 12). Again, the BOC group was removed using trifluoroacetic acid to yield compound 13. Compound 13 was then reacted with triethyleneglycol bis chloroformate (from which the "core" is derived) to yield the "twosided" dendritic compound (compound 14). The terminal CBZ-protected amino groups were then converted to the hydrobromide salt of amino group, and further reacted with bromoacetic anhydride to yield reactive bromoacetyl groups at each of the termini in compound WO 00/34231 PCT/US99/29339 Compound 8 N-BOC-N,N-bis-hexaethyleneglycol-amine Compound 4 (797 mg, 1.46 mmol) was dissolved in 14 mL of H 2 0, and the mixture was stirred at room temperature. To the mixture was added 465 mg (4.38 mmol) of Na,C0 3 The pH was checked to make sure it was basic, and 319 mg (1.46 mmol) of ditert-butyldicarbonate ((BOC) 2 0)was dissolved in 7 mL of dioxane and the resulting solution was added to the reaction mixture. The mixture was stirred at room temperature for 6 h and partitioned between 100 ml of H 2 0 and 3 x 100 mL of CH 2 C1 2 The combined organic layers were dried (MgSO 4 filtered, and concentrated to give 605 mg of compound 8 as a light yellow oil: 'H NMR (CDCl 3 6 1.45 9H), 3.45 4H), 3.8-3.5 44H): MS (ESI) calculated for C2 H, 5 NaNO, 4 668. Found: 668.
Compound 9 Compound 8 (52 mg, 0.08 mmol) was dissolved in 3 mL of CH 2 Cl 2 and 97 mg (0.483 mmol) of p-nitrophenylchloroformate was added to the mixture. The mixture was stirred at 0°C, 78 pL (0.966 mmol) of pyridine was added, and the mixture was then stirred at room temperature for 4 hours. The reaction mixture was cooled to 0°C, acidified with 1 N HC1, and partitioned between 10 mL of i N HCI and 3 x 10 mL of CHCl,. The combined organic layers were dried (MgSO 4 and concentrated to give 132 mg of an oil.
Purification was accomplished by silica gel chromatography (98 2 CH 2 C1 2 /MeOH) to give 57 mg of compound 9 as an oil: 'H NMR (CDCl 3 8 1.49 9H), 3.43 4H), 3.52-3.77 36H), 3.83 4H), 4.47 4H), 7.41 4H), 8.32 4H); MS (ESI) calculated for C 43
H
6 5 NaN30 22 998. Found: 998.
Compound Compound 9 (2.72 g, 2.79 mmol) was dissolved in 10 mL of CH 2 CL, and the mixture was stirred at 0°C. To the mixture was added 1.16 ml (8.36 mmol) of Et 3
N
WO 00/34231 PCT/US99/29339 followed by 1.842g (8.36 mmol) of mono-CBZ-piperazine dissolved in 10 mL of CH 2 Cl 2 The mixture was stirred at room temperature for 18 hours, cooled to 0 C, and acidified with 1 N HC1. The mixture was partitioned between 150 mL of 1 N HCI and 3 x 150 mL of CHCl 2 The combined organic layers were washed with saturated NaHCO, solution, dried (MgSO 4 and concentrated to give 3.64 g of a yellow oil. Purification by silica gel chromatography (97/3 CH 2 CI2/MeOH) gave 3.1 g of compound 10 as a light yellow oil: 'H NMR (CDC13) 5 1.45 9H), 3.40-3.55 12H), 3.55-3.68 36H), 3.71 (m, 4H), 4.37 4H), 5.17 4H), 7.35 (brd s, 10H); MS (ESI) calculated for C 5 5H, 8 NaNsO 2 0 1060. Found: 1060.
Compound 11 Compound 10 (3.54 g, 3.11 mmol) was dissolved in 15 mL ofCH,CI, and 15 mL of trifluoroacetic acid (TFA) was added to the mixture. The mixture was stirred at room temperature for 4 hours and concentrated. The residue was re-dissolved in 10 mL of CH 2 Cl 2 and neutralized by shaking with a saturated solution of NaHCO 3 at 0°C. The mixture was then partitioned between 100 mL of saturated NaHCO 3 solution and 4 x 100 mL of CH 2
CI,.
The combined organic layers were dried (MgSO4), filtered, and concentrated to give 3.16 g of compound 11 as a yellow oil: 'H NMR (CDCI1) 6 2.88 4H), 3.50 (brd s, 16H), 3.56-3.69 36H, 3.7 4H), 4.28 4H), 5.15 4H), 7.38 (brd s, 10H); MS (ESI) calculated for CsoHsoNsO, 5 1037. Found: 1038.
Compound 12 Compound 9 (647 mg, 0.663 mmol) and 2.065 g (1.989 mmol) of compound 11 were dissolved in 3 mL of CH 2 C1 2 and 462 L (3.315 mmol) of Et 3 N and 40 mg (0.331 mmol) of DMAP 4 -dimethylaminopyridine) was added to the mixture. The reaction mixture was stirred at room temperature overnight and cooled to 0°C. To the mixture was added 5 mL of HO, and the mixture was acidified with 1 N HCI and partitioned between 50 mL of HO and 3 x 50 mL of CHCI 2 The combined organic layers were dried (MgSO 4 WO 00/34231 PCT/US99/29339 and concentrated to give 2.77 g of a yellow oil. Purification by silica gel chromatography (CH 2 Cl 2 /MeOH) gave 1.307 g of compound 12 as a yellow oil: 'H NMR (CDCl 3 5 1.46 9H), 3.49 (brd s, 32H), 3.52-3.67 92H), 3.69 8H), 4.22 (m, 12H), 5.15 8H), 7.35 (brd s, Compound 13 Compound 12 (1.3 g, 0.47 mmol) of the starting material was dissolved in 10 mL of
CH
2 C12 and 10 mL of TFA (trifluoroacetic acid) was added. The mixture was stirred at room temperature for 4 hours, concentrated, and re-dissolved in 10 mL of CHCl 2 The mixture was neutralized shaking with a saturated solution of NaHCO 3 at 0°C. The mixture was partitioned between 25 mL of saturated NaHCO 3 solution and 4 x 25 mL of CH 2
CI
2 The combined organic layers were dried (MgSO) and concentrated to give 1.23 g of compound 13 as a yellow oil: 'H NMR (CDCI 3 5 3.48 (brd s, 32H), 3.53-3.67 92H), 3.71 8H), 4.22 12H), 5.15 8H), 7.38 (brd s, Compound 14 Compound 13 (600 mg, 0.224 mmol) was dissolved in 1.5 mL of CH,C1 2 and the mixture was stirred at 0OC. To the mixture was added 65 .tL (0.373 mmol) of DIPEA followed by the slow addition of a solution of 20.5 mg (0.075 mmol) of triethyleneglycol bis-chloroformate dissolved in 0.5 mL of CH 2 Cl 2 After 3 hours the reaction mixture was cooled to 0 C and acidified with 1 N HC1. The mixture was partitioned between 25 ml of 1 N HCI and 2 x 25 ml of CHCl 2 The combined organic layers were dried (MgSO 4 and concentrated to give 566 mg of a light yellow oil. Purification by silica gel chromatography (95/5 CH 2 CIl/MeOH) gave 145 mg of compound 14 as a light yellow oil: 'H NMR
(CDCI
3 5 3.51 (brd s, 64H), 3.54-3.77 272H), 4.23 28H), 5.17 16H), 7.36 (brd s, 40H); MS (ESI) calculated for C 26 oH 4 21
N
22 0, 06 5549. Found: 5549.
WO 00/34231 PCT/US99/29339 Compound Compound 14 (143 mg, 0.026 mmol) was treated with 3 mL of 30% HBr/AcOH for min. The resulting HBr salt was precipitated with ether. The solids were collected by centrifugation and washed three times with ether. The resulting HBr salt was dried in the desiccator overnight and dissolved in 1.2 ml of H,O. The mixture was stirred at 0°C, and 97 mg (1.16 mmol) of sodium bicarbonate was added. A solution of 107 mg (0.412 mmol) of bromoacetic anhydride in 1.2 mL of dioxane was added, the mixture was stirred at 0 C for 15-20 min. To the mixture was added 10 mL of H 2 0, and the mixture was slowly acidified with 1 M H,SO, to a pH of 4. The aqueous layer was extracted with 2 x 10 mL of EtOAc which was discarded. The aqueous layer was then extracted with 6 x 10 mL of 8/2
CH
2 CI,/MeOH. The combined organic layers were dried (MgSO 4 filtered and concentrated to give 117 mg of an oil. Preparative HPLC (C18, gradient, 35-55% B, A 0.1% TFA/H,O and B 0.1% TFA/CH 3 CN) to give 27 mg of compound 15 as a colorless oil: 'H NMR (CDCI 3 3.46-3.75 336H), 3.90 16H), 4.21-4.33 28H); MS (ESI) calculated for C 212
H
3 ,,BrgN 22 0 9 5435. Found: 5448.
Example 3 Synthesis of Octamer of DEGA/TEG Using Segmental Approach A chemical scheme for the preparation of an octamer of DEGA/TEG is shown in Figures 12A and 12B. The bis-diethyleneglycolamine (compound 7) was reacted with ditert-butyldicarbonate to yield the N-BOC compound (compound 16), which was then reacted with para-nitrophenylchloroformate to yield the para-nitrophenylcarbonate compound (compound 17). The para-nitrophenylcarbonate (PNP) group was then converted to a carbamate group by reaction with mono-CBZ-protected piperazine, yielding compound 18. The BOC group was removed using trifluoroacetic acid to yield compound 18a. Compounds 17 and 18a were then reacted together to form a "one-sided" dendritic compound (compound 19). Again, the BOC group was removed using trifluoroacetic acid to yield compound 19a. Compound 19a was then reacted with triethyleneglycol bis chloroformate (from which the "core" is derived) to yield the "two-sided" dendritic WO 00/34231 PCT/US99/29339 compound (compound 20). The terminal CBZ-protected amino groups were then converted to the hydrobromide salt of amino group, and further reacted with bromoacetic anhydride to yield reactive bromoacetyl groups at each of the termini in compound Compound 16 N-BOC-N,N-bis-diethyleneglycol-amine To a solution of 600 mg 3.10 mmol) of bis-diethyleneglycolamine (compound 7) in 9.9 mL of 10% aqueous Na 2
CO
3 was added slowly a solution of 678 mg (3.10 mmol) of di-tert-butyldicarbonate in 5 mL of dioxane. The mixture was stirred at room temperature for 5 hours, and 25 mL of water was added. The mixture was shaken with Et 2 O, the layer was discarded, and the mixture was extracted with three 25 mL portions of CH,C 2 The CH 2 Cl, extracts were combined, dried (MgSO 4 filtered and concentrated to give 717 mg of compound 16 as a viscous oil: 'H NMR (CDCl 3 8 1.48 9H), 3.45 (brd s, 4H), 3.60 4H), 3.65 (brd s, 4H), 3.69 (brd s, 4H).
Compound 17 To a solution of 200 mg (0.68 mmol) of compound 16 and 822 mg g (4.08 mmol) of 4-nitrophenyl rn,- n 01 V- 4-nitrophenyloroformate in 30 mL of CH2C2 ,was added 0.6U6 L (8.16 mmoi) of pyridine at 0°C. The mixture was stirred at room temperature for 1.5 hours then cooled back to 0°C, and the mixture was acidified with 1 N HCI and partitioned between 50 mL of 1 N HCI and three 50 mL portions of CH 2 Cl 2 The combined CH 2 C1 2 extracts were dried (MgSO 4 filtered and concentrated to give 1.21 g of yellow oil. The mixture was partially purified by silica gel chromatography (CH 2 CI2/MeOH) to give 581 mg of partially purified compound 17 which still contained 4-nitrophenol: MS (ESI) calculated for C 7
,H
3 3 NaN304 646. Found: 646. This material was used directly in the next step.
WO 00/34231 PCT/US99/29339 Compound 18 To a solution of 421 mg of partially purified compound 17 (0.68 mmol theoretical) and 282 pL (2.02 mmol) of Et 3 N in 4 mL of CH 2 Cl 2 at 0 C was added a solution of 4 46 mg (2.02 mmol) of mono-CBZ-piperazine in 4 mL of CH 2 C1l. The mixture was stirred at room temperature for 1.5 hours, cooled back to 0°C, acidified with 1 N HCI, and partitioned between 50 mL of 1 N HCI and 3 X 50 mL of CH 2 Cl 2 The combined CH 2
CI
2 layers were washed with saturated NaHCO, solution, dried (MgSO 4 filtered, and concentrated to give 500 mg of viscous residue. Purification by silica gel chromatography (CH 2 C1,/MeOH) gave 265 mg of compound 18 as a viscous oil: 'H NMR (CDC13) 6 1.45 9H), 3.40-3.70 28H), 4.28 4H), 5.16 4H), 7.37 (brd s, 10H); MS (ESI) calculated for
C
39
H,
5 NaNsO,2 808. Found: 809.
Compound 19 Compound 18 (77 mg, 0.098 mmol) was dissolved in 1.5 mL of CH 2 C1, and 1.5 mL of TFA was added. The mixture was stirred for 6 hours and concentrated. The residue was dissolved in 10 mL of CH 2 C12 and the resulting solution was stirred at 0°C while 15 mL of saturated NaHCO 3 solution was added. The aqueous layer was extracted with 4 X 10 mL of CH,C1,, and the combined organic layers were dried (MgSO 4 filtered, and concentrated to give 62 mg of free amine, compound 18a: 'H NMR (CDC1) 5 2.90 4H), 3.46 (brd s, 16H), 3.66 8H), 4.25 4H), 5.16 4H), 7.36 (brd s, 10H). To a solution of compound 17 in CH,Cl2 is added the free amine, compound 18a (3 eq.) and pyridine. The mixture is stirred at room temperature until the reaction appears done by TLC. The product is isolated by extractive workup and purification by silica gel chromatography to give compound 19.
WO 00/34231 PCT/US99/9339 Compound Compound 19 is dissolved in 1/1 CH2CI/TFA, and stirred at room temperature for 1 hour. The mixture is concentrated under vacuum to provide an amine intermediate, compound 19a. Two equivalents of the intermediate amine is reacted with triethyleneglycol bis-chloroformate in CH 2 C1 2 and pyridine. The product is isolated by extractive workup and purification by silica gel chromatography to give compound Compound In a process similar to that described above for compound 15, compound 20 is treated with 30% HBr/AcOH for 30 min. The resulting HBr salt is precipitated with ether.
The solids are collected by centrifugation and washed with ether. The resulting HBr salt is dried in the desiccator overnight and dissolved in H 2 0. The mixture was stirred at 0°C and sodium bicarbonate added. A solution of bromoacetic anhydride in dioxane is added, and the mixture stirred at 0°C for 15-20 min. To the mixture is added H 2 0, and the mixture is slowly acidified with 1 M H 2
SO
4 to a pH of 4. The aqueous layer is extracted with EtOAc which was discarded. The aqueous layer is then extracted with 8/2 CH 2 Cl2/MeOH. The combined organic layers are dried (MgSO 4 filtered and concentrated to give compound Example 4 Synthesis of Tetramer of DEGA/TEG Using Core Propagation Approach A chemical scheme for the preparation of an tetramer of DEGA/TEG is shown in Figure 13. The bis-diethyleneglycolamine (compound 7) was reacted triethyleneglycol bis chloroformate (from which the "core" is derived) to yield the tetrahydroxy compound, compound 21. Compound 21 was then reacted with para-nitrophenylchloroformate to yield the tetrapara-nitrophenylcarbonate compound (compound 22). The paranitrophenylcarbonate (PNP) group was then converted to a carbamate group by reaction with mono-CBZ-protected piperazine, yielding compound 23. The terminal CBZ-protected WO 00/34231 PCT/US99/29339 amino groups were then converted to the hydrobromide salt of amino group, and further reacted with bromoacetic anhydride to yield reactive bromoacetyl groups at each of the termini in compound 23a.
Compound 21 To a solution of 1.94 g (10.0 mmol) of compound 7 and 1.75 mL (1.30 g, 10.0 mmol) of Et 3 N at 0°C a solution of 980 AL (1.31 g, 4.78 mmol) of triethyleneglycol bischloroformate in 35 mL of CH 2 Cl 2 The mixture was stirred for 3 hours at room temperature and concentrated to give 4.84 g of crude compound 21 which was used as is in the next step: 'H NMR (CDCI 3 6 3.10 4H), 3.45-3.78 32H), 4.24 4H).
Compound 22 Pyridine (9.3 mL, 114.7 mmol) was added to a stirred solution of 4.84 g of crude compound 21 (4.78 mmol theoretical) and 7.71 g (38.24 mmol) of 4nitrophenylchloroformate at 0°C, and the mixture was stirred for 4 hours at room temperature. The mixture was cooled to 0°C and acidified with 1 N HCI. The mixture was partitioned between 250 mL of 1 N HCI and 2 X 250 mL of CH 2 CI,. The organic layers were combined, dried (MgSO 4 filtered and concentrated to give 9.81 g of crude product.
Purification by silica gel chromatography
(CH
2 Cl,/MeOH) gave 4.40 g of compound 22 as a sticky viscous oil: 'H NMR (CDCI 3 8 3.56 8H), 3.61-3.72 16H), 3.76 (m, 8H), 4.23 4H), 4.44 8H), 7.40 8H), 8.28, 8H); HRMS (FAB) calculated for CsH 60 CsNO6 30 1381.2408. Found: 1381.2476.
Compound 23 A solution of 106 mg (0.48 mmol) of mono-CBZ-piperazine in 0.5 mL of CH 2 C1 2 was added to a stirred solution of 100 mg (0.08 mmol) of compound 22 and 67 pL (0.48 mmol) of Et 3 N at 0 C. The mixture was stirred for 18 hours at room temperature, cooled to WO 00/34231 PCT/US99/29339 0°C, and acidified with 1 N HCI. The mixture was partitioned between 5 mL of 1 N HC1 and 3 X 5 mL of CH 2 C1 2 The organic layers were combined, washed with saturated NaHCO 3 solution, dried (MgSO 4 filtered, and concentrated to give 119 mg of yellow oil.
Purification by silica gel chromatography (CH 2 CI2/MeOH) gave 81 mg of compound 23 as a viscous oil: 'H NMR (CDC13) 6 3.48 (brd s, 40H), 3.52-3.74 24H), 4.24 (t, 12H), 5.14 8H), 7.35 (brd s, 20H); HRMS (FAB) calculated for C 6 Hi04CsN1oO 2 6 1705.6178. Found: 1705.6269.
Compound 23a In a process similar to that described above for compound 15, compound 23 is treated with 30% HBr/AcOH for 30 min. The resulting HBr salt is precipitated with ether.
The solids are collected by centrifugation and washed with ether. The resulting HBr salt is dried in the desiccator overnight and dissolved in HO. The mixture was stirred at 0°C and sodium bicarbonate added. A solution of bromoacetic anhydride in dioxane is added, and the mixture stirred at 0°C for 15-20 min. To the mixture is added H 2 0, and the mixture is slowly acidified with 1 M H 2
SO
4 to a pH of 4. The aqueous layer is extracted with EtOAc which was discarded. The aqueous layer is then extracted with 8/2 CH 2 CI2/MeOH. The combined organic layers are dried (MgSO 4 filtered and concentrated to give compound 23a.
Example Synthesis of Tetramer of DEGA/PTH Using Core Propagation Approach A chemical scheme for the preparation of an tetramer of DEGA/PTH is shown in Figure 14A. The bis-diethyleneglycolamine (compound 7) was reacted with terephthaloyl chloride (from which the "core" is derived) to yield the tetrahydroxy compound, compound 24. Compound 24 was then reacted with para-nitrophenylchloroformate to yield the tetra para-nitrophenylcarbonate compound (compound 25). The para-nitrophenylcarbonate (PNP) group was then converted to a carbamate group by reaction with mono-CBZprotected piperazine, yielding compound 26. The terminal CBZ-protected amino groups 57 WO 00/34231 PCT/US99/29339 were then converted to the hydrobromide salt of amino group, and further reacted with bromoacetic anhydride to yield reactive bromoacetyl groups at each of the termini in compound 26a.
Compound 24 A solution of 300 mg (1.48 mmol) of terephthaloyl chloride in 9 mL of CH 2 CI, was slowly added to a 0°C solution of 6 00 mg (3.10 mmol) of 7 and 540 pL (3.10 mmol) of diisopropylethylamine in 12 mL of CHC1 2 and the mixture was stirred under nitrogen atmosphere for 3 hours at room temperature. The mixture was concentrated under vacuum to give 1.53 g of a crude mixture which contained 24.
Compound The 1.53 g of crude 24 and 2.38 g (11.81 mmol) of 4 -nitrophenylchloroformate were dissolved in 30 mL ofpyridine, and the resulting solution was stirred at 0°C while 1.91 mL (23.62 mmol) ofpyridine was added. The mixture was stirred at room temperature for 4 hours, cooled to 0°C, and acidified with 1 N HC1. The mixture was partitioned between 75 mL of 1 N HCI and 2 X 75 mL ofCH 2
CI
2 The organic layers were combined, washed with saturated NaHCO, solution, dried (MgSO 4 Ir, and concentrated to give 2.75 g of an oil. Purification by silica gel chromatography (CH,C1 2 /MeOH) gave 1.33 g of 25 as a viscous oil: 'H NMR (CDC13) 6 3.52 (brd s, 8H), 3.65 (brd s, 4H), 3.81 (brd s, 12H), 4.41 8H), 7.38 8H), 7.47 4H), 8.27 (m, 8H); HRMS (FAB) calculated for CsH, 5
N
6 0 26 1177.3010. Found: 1177.3062.
Compound 26 A solution of 113 mg (0.51 mmol) of mono-CBZ-piperazine in 0.5 mL of CH 2 C1 2 was added to a stirred solution of 100 mg (0.085 mmol) of compound 25 and 71 pL (0.51 mmol) of Et 3 N at 0°C. The mixture was stirred for 18 hours at room temperature, cooled to o0C, and acidified with 1 N HC1. The mixture was partitioned between 5 mL of 1 N HCI 58 WO 00/34231 PCT/US99/29339 and 3 X 5 mL of CH 2 Cl 2 The organic layers were combined, washed with saturated NaHCO 3 solution, dried (MgSO 4 filtered, and concentrated to give 125 mg of yellow oil.
Purification by silica gel chromatography (CH 2 C12/MeOH) gave 59 mg of 26 as a viscous oil: 'H NMR (CDCI') 3.45 (brd s, 40H), 3.55 4H), 3.72 4H), 3.78 (s, 8H), 4.24 8H), 5.13 8H), 7.34 (brd s, 20H), 7.42 4H); HRMS (FAB) calculated for C 76
H
96 CsNi00 22 1633.5755. Found: 1633.5846.
Compound 26a In a process similar to that described above for compound 15, compound 26 is treated with 30% HBr/AcOH for 30 min. The resulting HBr salt is precipitated with ether.
The solids are collected by centrifugation and washed with ether. The resulting HBr salt is dried in the desiccator overnight and dissolved in H 2 0. The mixture was stirred at 0°C and sodium bicarbonate added. A solution of bromoacetic anhydride in dioxane is added, and the mixture stirred at 0 C for 15-20 min. To the mixture is added H 2 0, and the mixture is slowly acidified with 1 M H 2
SO
4 to a pH of 4. The aqueous layer is extracted with EtOAc which was discarded. The aqueous layer is then extracted with 8/2 CH 2 Cl 2 /MeOH. The combined organic layers are dried (MgSO 4 filtered and concentrated to give compound 26a.
Example 6 Synthesis of Octamer of DEGA/PTH Using Core Propagation Approach A chemical scheme for the preparation of an octamer of DEGA/PTH is shown in Figure 14B. The bis-diethyleneglycolamine (compound 7) was reacted with the tetraparanitrophenylcarbonate compound (compound 25) to yield the octahydroxy compound, compound 27a. Compound 27a was then reacted with para-nitrophenylchloroformate to yield the octa para-nitrophenylcarbonate compound (compound 27). The paranitrophenylcarbonate (PNP) group was then converted to a carbamate group by reaction with mono-CBZ-protected piperazine, yielding compound 28. The terminal CBZ-protected amino groups were then converted to the hydrobromide salt of amino group, and further 59 WO 00/34231 PCT/US99/29339 reacted with bromoacetic anhydride to yield reactive bromoacetyl groups at each of the termini in compound 28a.
Compound 27a A solution of 98 mg (0.51 mmol) of compound 7 in 0.5 mL of CHCl 2 was added to a stirred solution of 100 mg (0.085 mmol) of compound 25 and 71 iL (0.51 mmol) of Et 3
N
at 0°C, and the mixture was stirred for 18 hours. The mixture was concentrated to give 250 mg of crude product, compound 27a.
Compound 27 Crude compound 27a (250 mg) was dissolved in 4 mL of CH 2 C1,. The mixture was cooled to 0°C, and 275 mg (1.36 mmol) of 4 -nitrophenylchloroformate was added followed by 220 L (2.74 mmol) of pyridine. The mixture was stirred at room temperature for 7 hours, cooled to 0°C, and acidified with 1 N HCI. The mixture was partitioned between mL of 1 N HCI and 2 X 15 mL of CHC1 2 The organic layers were combined, washed with saturated NaHCO 3 solution, dried (MgSO 4 filtered, and concentrated to give 393 mg of an oil. Purification by silica gel chromatography
(CH
2 C1 2 /MeOH) gave 123 mg of compound 27 q. z P viw- ;I T 'T I "IN" 6, comound 27 as a viscous ci: 'H NMR (CDCi) 6 3.63-3.86 72H), 4.46 24H), 7.26 4H), 7.35 16H), 8.24 16H).
Compound 28 A solution of 6 eq. of mono-CBZ-piperazine in CH 2
CI
2 is added to a stirred solution of compound 27 and 6 eq. of Et 3 N at 0°C. The mixture is stirred for 18 hours at room temperature, cooled to 0°C, and acidified with 1 N HC1. The mixture is partitioned between I N HCI and CH 2 C1 2 The organic layers are combined, washed with saturated NaHCO 3 solution, dried (MgSO 4 filtered, and concentrated to give crude product which can be purified by silica gel chromatography to give compound 28.
WO 00/34231 PCT/US99/29339 Compound 28a In a process similar to that described above for compound 15, compound 28 is treated with 30% HBr/AcOH for 30 min. The resulting HBr salt is precipitated with ether.
The solids are collected by centrifugation and washed with ether. The resulting HBr salt is dried in the desiccator overnight and dissolved in H2O. The mixture was stirred at 0°C and sodium bicarbonate added. A solution of bromoacetic anhydride in dioxane is added, and the mixture stirred at 0°C for 15-20 min. To the mixture is added H 2 0, and the mixture is slowly acidified with 1 M H,SO 4 to a pH of 4. The aqueous layer is extracted with EtOAc which was discarded. The aqueous layer is then extracted with 8/2 CH,C1 2 /MeOH. The combined organic layers are dried (MgSO 4 filtered and concentrated to give compound 28a.
Example 7 Synthesis of Tetramer of HEGA/TEG Using Core Propagation Approach A chemical scheme for the preparation of an tetramer of HEGA/TEG is shown in Figure 15. The bis-hexaethyleneglycolamine (compound 7) was reacted triethyleneglycol bis chloroformate (from which the "core" is derived) to yield the tetrahydroxy compound, compound 29. Compound 29 was then reacted with para-nitrophenylchloroformate to yield the tetra para-nitrophenylcarbonate compound (compound 30). The paranitrophenylcarbonate (PNP) group was then converted to a carbamate group by reaction with mono-CBZ-protected piperazine, yielding compound 31. The terminal CBZ-protected amino groups were then converted to the hydrobromide salt of amino group, and further reacted with bromoacetic anhydride to yield reactive bromoacetyl groups at each of the termini in compound 31 a.
WO 00/34231 PCT/US99/29339 Compound 29 To a solution of 2.1 eq. of compound 4 and 2.1 eq. of Et 3 N at 0°C is added a solution of 1 eq. of triethyleneglycol bis-chloroformate in CH 2 C12. The mixture is stirred at room temperature until complete by TLC and concentrated to give crude compound 29 which is used as is in the next step.
Compound Pyridine (12 eq.) is added to a stirred solution of crude compound 29 and 6 eq. of 4nitrophenylchloroformate at 0°C, and the mixture is stirred at room temperature until the reaction is complete as evidenced by TLC. The mixture is cooled to 0°C, and acidified with 1 N HC1. The mixture is partitioned between 1 N HCI and CH 2 C12. The organic layers are combined, dried (MgSO 4 filtered and concentrated to give crude product.
Compound 30 is purified by silica gel chromatography.
Compound 31 A solution of 6 eq. of mono-CBZ-piperazine in CH 2 Cl 2 is added to a stirred solution of compound 30 and 6 eq. of Et 3 N at 0°C. The mixture is stirred for at room temperature until the reaction is complete as evidenced by TLC, cooled to 0°C, and acidified with 1 N HC1. The mixture is partitioned between 1 N HCI and CH 2 C1 2 The organic layers are combined, washed with saturated NaHCO 3 solution, dried (MgSO 4 filtered, and concentrated to give crude compound 31 which is purified by silica gel chromatography.
Compound 31a In a process similar to that described above for compound 15, compound 31 is treated with 30% HBr/AcOH for 30 min. The resulting HBr salt is precipitated with ether.
The solids are collected by centrifugation and washed with ether. The resulting HBr salt is WO 00/34231 PCT/US99/29339 dried in the desiccator overnight and dissolved in H 2 0. The mixture was stirred at 0 C and sodium bicarbonate added. A solution of bromoacetic anhydride in dioxane is added, and the mixture stirred at 0 C for 15-20 min. To the mixture is added H 2 0, and the mixture is slowly acidified with 1 M H 2 SO, to a pH of 4. The aqueous layer is extracted with EtOAc which was discarded. The aqueous layer is then extracted with 8/2 CH 2 C12/MeOH. The combined organic layers are dried (MgSO 4 filtered and concentrated to give compound 31a.
Example 8 Synthesis of Tetramer of DEA/PTH Using Core Propagation Approach A chemical scheme for the preparation of an tetramer of DEGA/PTH is shown in Figure 16A. Diethanolamine was reacted with terephthaloyl chloride (from which the "core" is derived) to yield the tetrahydroxy compound, compound 32. Compound 32 was then reacted with para-nitrophenylchloroformate to yield the tetra paranitrophenylcarbonate compound (compound 33). The para-nitrophenylcarbonate
(PNP)
group was then converted to a carbamate group by reaction with mono-CBZ-protected piperazine, yielding compound 34. The terminal CBZ-protected amino groups were then converted to the hydrobromide salt of amino group, and further reacted with bromoacetic anhydride to yield reactive bromoacetyl groups at each of the termini in compound 34a.
Compound 32 A solution of 2.0 g (9.85 mmol) of terephthaloyl chloride in 25 mL of THF was added slowly to a 0°C solution of 2.17 g (20.7 mmol) of diethanolamine and 3.6 mL (20.7 mmol) of diisopropylethylamine in 50 mL of THF. The mixture was stirred at room temperature for 3 hours and concentrated under vacuum to give 6.7 g of crude compound 32. A small amount was purified for characterization purposes by preparative HPLC (1" C18 column, gradient 0-15% B, A 0.1% TFA/HO and B 0.1% TFA/CH 3 CN): 'H NMR
(D
2 0) 5 3.52 4H), 3.59 4H), 3.72 4H), 3.89 4H), 7.51 4H); MS (ESI) calculated for C, 6
H
25
N
2 0 6 341. Found: 341.
63 WO 00/34231 PCT/US99/29339 Compound 33 Pyridine (11.4 mL, 141.2 mmol) was slowly added to a stirred solution of 6.01 g (8.8 mmol theoretical) of crude compound 32 and 14.2 g (70.6 mmol) of 4nitrophenylchloroformate in 88 mL of THF. The mixture was stirred at room temperature for 18 hours and acidified with 1 N HC1. The mixture was partitioned between 300 mL of 1 N HCI and 2 X 300 mL of CH 2 Cl 2 The combined organic layers were washed with saturated NaHCO 3 solution, dried (MgSO 4 filtered, and concentrated to give 14.0 g of sticky orange oil. Purification by silica gel chromatography (CHCl 2 /MeOH) provided 3.34 g of compound 33 as a crystalline solid: mp 77-85°C; 'H NMR (CDCI 3 5 3.76 (brd, 4H), 4.01 (brd, 4H), 4.38 (brd, 4H), 4.64 (brd, 4H), 7.36 (brd, 8H), 7.53 4H), 8.28 (m, 8H); 3 C NMR (CDCl 3 8 45.0, 48.5, 65.9, 66.6, 121.8, 125.0, 125.4, 126.1, 127.2, 137.1, 145.6, 152.4, 155.2, 171.9; HRMS (FAB) calculated for C 44
H
36 CsN 6
O
22 (M+Cs): 1133.0937. Found: 1133.0988.
Compound 34 A solution of 132 mg (0.6 mmol) of mono-CBZ-piperazine in 0.5 mL of CH 2 C1 2 GO I n1 1 v. of compound 33 i and 84 p (0.6 mmoi) A JA1tl~ Ji I VV Ill, I k.L L1Ul) U Jj 0 of Et 3 N in 0.5 mL of CH 2
C
2 The reaction mixture was stirred for 18 hours at room temperature, cooled to 0°C, and acidified with 1 N HC1. The mixture was partitioned between 5 mL of 1 N HCI and 3 X 5 mL of CH 2 Cl2. The combined organic layers were washed with saturated NaHCO 3 solution, dried (MgSO), filtered, and concentrated to give 123 mg of white solid. Purification by silica gel chromatography
(CH
2 Cl2/MeOH) provided 86 mg of compound 34 as a crystalline solid: mp 64-67 0 C; 1H NMR
(CDCI
3 3.35-3.63 36H), 3.86 (brd, 4H), 4.13 (brd, 4H), 4.41 (brd, 4H), 5.14 8H), 7.38 (brd s, 20H), 7.43 4H); 3 C NMR (CDCl 3 43.5, 45.1, 48.4, 62.6, 67.4, 126.9, 128.0, 128.2, 128.5, 136.3, 137.4, 155.1, 171.4; HRMS (FAB) calculated for
C
68 HsoCsNoO,, 1457.4706. Found: 1457.4781.
WO 00/34231 PCT/US99/29339 Compound 34a In a process similar to that described above for compound 15, compound 34 is treated with 30% HBr/AcOH for 30 min. The resulting HBr salt is precipitated with ether.
The solids are collected by centrifugation and washed with ether. The resulting HBr salt is dried in the desiccator overnight and dissolved in H,O. The mixture was stirred at 0 C and sodium bicarbonate added. A solution of bromoacetic anhydride in dioxane is added, and the mixture stirred at 0°C for 15-20 min. To the mixture is added H 2 0, and the mixture is slowly acidified with 1 M H 2 SO to a pH of 4. The aqueous layer is extracted with EtOAc which was discarded. The aqueous layer is then extracted with 8/2 CH 2
C
2 /MeOH. The combined organic layers are dried (MgSO,), filtered and concentrated to give compound 34a.
Example 9 Synthesis of Octamer of DEA/PTH Using Core Propagation Approach A chemical scheme for the preparation of an octamer of DEA/PTH is shown in Figure 16B. Diethanolamine was reacted with the tetra para-nitrophenylcarbonate compound (compound 33) to yield the octahydroxy compound compound 35a. Compound was then reacted with para-nitrophenylchloroformate to yield the octaparanitrophenylcarbonate compound (compound 35). The para-nitrophenylcarbonate
(PNP)
group was then converted to a carbamate group by reaction with mono-CBZ-protected piperazine, yielding compound 36. The terminal CBZ-protected amino groups were then converted to the hydrobromide salt of amino group, and further reacted with bromoacetic anhydride to yield reactive bromoacetyl groups at each of the termini in compound 36a.
Compound A solution of 100 mg (0.1 mmol) of compound 33 in 450 .IL of pyridine was slowly added to a 0°C solution of 63 mg (0.6 mmol) of diethanolamine in 150 pL of pyridine. The WO 00/34231 PCTIUS99/9339 mixture was stirred for 3 hours at room temperature and cooled back to 0 C, to yield crude compound 35a, which was used in the next step.
Compound A solution of 443 mg (2.2 mmol) of 4-nitrophenylchloroformate was added to the reaction mixture above, and the mixture was stirred for 18 hours at room temperature. The mixture was then cooled to 0 C, and acidified with 1 N HC1, and partitioned between mL of 1 N HC1 and 2 X 15 mL of CH 2
CI
2 The combined organic layers were dried (MgSO 4 filtered, and concentrated to give 462 mg of white sticky solid. Purification by silica gel chromatography (CH2CI2/MeOH) provided 141 mg of compound 35 as a crystalline solid: mp 75-80 0 C; 'H NMR (CDCl 3 8 3.52-3.81 20H), 3.89 4H), 4.12 4H), 4.36-4.59 20H), 7.42 20H), 8.30 16H).
Compound 36 A solution of 61 mg (0.276 mmol) of mono-CBZ-piperazine in 200 pL of CH 2 C1 2 was added to a 0°C solution of 50 mg (0.023 mmol) of compound 35 and 39 pL (0.276 mmol) of Et 3 N in 200 pL of CH 2 C1 2 The reaction mixture was stirred for 7 hours at room temperature, cooled to 0°C, and acidified with 1 N HC1. The mixture was partitioned between 10 mL of 1 N HCI and 3 X 10 mL of CH 2 C12. The combined organic layers were dried (MgSO 4 filtered, and concentrated to give 85 mg of yellow solid. Purification by silica gel chromatography (CH 2 CI,/MeOH) provided 33 mg of compound 36 as a sticky low melting solid: 'H NMR (CDCl 3 5 3.37-3.72 84H), 3.84 4H), 4.03-4.29 20H), 4.35 4H), 5.14 16H), 7.35 (brd s, 40H), 7.44 4H); MS (MALDI) calculated for C,4oH, 72 NaN 2 2 0 42 2856. Found: 2857.
WO 00/34231 PCT/US99/29339 Compound 36a In a process similar to that described above for compound 15, compound 36 is treated with 30% HBr/AcOH for 30 min. The resulting HBr salt is precipitated with ether.
The solids are collected by centrifugation and washed with ether. The resulting HBr salt is dried in the desiccator overnight and dissolved in H 2 0. The mixture was stirred at 0°C and sodium bicarbonate added. A solution of bromoacetic anhydride in dioxane is added, and the mixture stirred at 0°C for 15-20 min. To the mixture is added H 2 0, and the mixture is slowly acidified with 1 M H,SO, to a pH of 4. The aqueous layer is extracted with EtOAc which was discarded. The aqueous layer is then extracted with 8/2 CH 2
CI
2 /MeOH. The combined organic layers are dried (MgSO 4 filtered and concentrated to give compound 36a.
Example Synthesis of Tetramer of DEA/DEG Using Core Propagation Approach A chemical scheme for the preparation of an tetramer of DEA/DEG is shown in Figures 17A and 17B. Diethyleneglycol (from which the "core" is derived) was reacted with para-nitrophenylchloroformate to yield the di para-nitrophenylcarbonate compound mrrmnr>rn A P7 L. t. i. J iMp u V n vv37 w utln rcaicteu w ith U diIuth al ine io ifTrm ihe tetrahydroxy compound, compound 38. Compound 38 was then reacted with paranitrophenylchloroformate to yield the tetrapara-nitrophenylcarbonate compound (compound 39). The para-nitrophenylcarbonate (PNP) group was then converted to a carbamate group by reaction with mono-CBZ-protected piperazine, yielding compound The terminal CBZ-protected amino groups were then converted to the hydrobromide salt of amino group (compound 41), and further reacted with bromoacetic anhydride to yield reactive bromoacetyl groups at each of the termini in compound 42.
WO 00/34231 PCT/US99/29339 Compound 37 Diethyleneglycol bis-4-nitrophenylcarbonate Pyridine (30.5 mL, 377 mmol) was slowly added to a 0°C solution of 5.0 g (47.11 mmol) of diethylene glycol and 23.74 g (118 mmol) of 4-nitrophenylchloroformate in 500 mL of THF. The cooling bath was removed, and the mixture was stirred for 18 hours at room temperature. The mixture was cooled back to 0°C, acidified with 6 N HC1, and partitioned between 400 mL of 1 N HCI and 2 X 400 mL of CH 2 Cl 2 The combined organic layers were dried (MgSO 4 filtered, and concentrated to give 24.3 g of a white solid. Crystallization from hexanes/EtOAc gave 16.0 g of compound 37 as a white powder: mp 110°C; 'H NMR (CDCl 3 8 3.89 4H), 4.50 4H), 7.40 4H), 8.26 (d, 4H).
Compound 38 A solution of 2.5 g (5.73 mmol) of compound 37 in 17 mL of pyridine was added to a 0°C solution of 1.8 g (17.2 mmol) of diethanolamine in 3 mL of pyridine. The cooling bath was removed, and the mixture was stirred for 5 hours at room temperature to yield compound 38, which was not isolated but was used as is in the next step.
Compound 39 The mixture from the previous step was cooled back to 0 C, 40 mL of CH 2 Cl 2 was added followed by a solution of 11.55 g (57.3 mmol) of 4-nitrophenylchloroformate in mL of CH 2 Cl 2 and the mixture was stirred for 20 hours at room temperature. The mixture was cooled back to 0°C, acidified with 1 N HC1, and partitioned between 300 mL of 1 N HCI and 2 X 200 mL of CH 2 Cl. The combined organic layers were dried (MgSO 4 filtered, and concentrated to give 13.6 g of yellow solid. Purification by silica gel chromatography (CH 2 Cl 2 /MeOH and EtOAc/hexanes) provided 4.91 g of compound WO 00/34231 PCT/US99/29339 39 as a sticky amorphous solid: 'H NMR (CDCI 3 3.72 12H), 4.31 4H), 4.48 (m, 8H), 7.40 8H), 8.29 8H).
Compound A solution of 128 mg (0.58 mmol) of mono-CBZ-piperazine in 1.0 mL of CHCI1 was added to a 0°C solution of 100 mg (0.10 mmol) of compound 39 and 82 iL (0.58 mmol) of Et 3 N in 1.0 mL of CH 2 ClI. The reaction mixture was stirred for 18 hours at room temperature, cooled to 0°C, and acidified with 1 N HC1. The mixture was partitioned between 10 mL of 1 N HCI and 3 X 10 mL of CH 2 C12. The combined organic layers were washed with saturated NaHCO 3 solution, dried (MgSO 4 filtered, and concentrated to give 162 mg of yellow oil. Purification by silica gel chromatography (EtOAc/hexanes followed by CH 2 Cl2/MeOH) provided 125 mg of compound 40 as a glassy amorphous solid: 'H NMR (CDCl 3 8 3.36-3.59 40H), 3.68 4H), 4.22 12H), 5.16, 8H), 7.36 (brd s, 20H); MS (ESI) calculated for C 66
H
2 4 NaNo,0 2 1376. Found: 1376.
Compound 41 Compound 40 (150 mg, 0.11 mmol) was dissolved in 3 mL of 30% HBr/HOAc.
The mixture was stirred for 30 minutes at room temperature, and the HBr salt was precipitated by addition of EtO2. The precipitate, compound 41, was washed twice with Et,O and dried under vacuum.
Compound 42 The precipitate, compound 41, was dissolved in 20 mL of H 2 0. The mixture was brought to pH 12 by addition of 10 N NaOH and extracted with six 20 mL portions of 4/1
CH
2
CI
2 /MeOH. The combined organic layers were dried (MgSO 4 filtered, and concentrated to provide the free amine. The free amine was dissolved in 8 mL of CH 3
CN,
1.5 mL of MeOH was added to improve solubility, and the solution was stirred at 0 C WO 00/34231 PCT/US99/29339 while a solution of 114 mg (0.66 mmol) of chloroacetic anhydride in 2 mL of CH 3 CN was added. The mixture was stirred at room temperature for 2.5 hours and concentrated to give 107 mg of an oil. Purification by preparative HPLC C18 column, gradient 25-45% B, A 0.1% TFA/H,O and B 0.1% TFA/CH 3 CN) provided 44 mg of compound 42 as a viscous oil: 'H NMR (CDCl 3 5 3.41-3.80 44H), 4.12 8H), 4.24 12H); MS (ESI) calculated for C 42
H
5
C
4 lN, 0 1121. Found: 1121.
Example 11 Synthesis of Octamer of DEA/DEG Using Core Propagation Approach A chemical scheme for the preparation of an octamer of DEA/DEG is shown in Figures 17C and 17D. The tetrapara-nitrophenylcarbonate compound, compound 39, was reacted with diethanolamine to form the octahydroxy compound, compound 43a.
Compound 43a was then reacted with para-nitrophenylchloroformate to yield the octa para-nitrophenylcarbonate compound (compound 43). The para-nitrophenylcarbonate (PNP) group was then converted to a carbamate group by reaction with mono-CBZprotected piperazine, yielding compound 44. The terminal CBZ-protected amino groups were then converted to the hydrobromide salt of amino group (compound 44a), and further reacted with bromoacetic anhydride to yield reactive bromoacetyl groups at each of the termini in compound Compound 43a A solution of 100 mg (0.097 mmol) of compound 39 in 450 pL of pyridine was added to a 0°C solution of 61 mg (0.583 mmol) of diethanolamine in 150 tL of pyridine.
The cooling bath was removed, and the mixture was stirred for 20 hours at room temperature, to yield the crude compound 43a, which was used as is in the next step.
WO 00/34231 PCT/US99/29339 Compound 43 The mixture from the previous step was cooled back to 0°C, and a solution of 431 mg (2.138 mmol) of 4-nitrophenylchloroformate in 4 mL of THF followed by 2 mL of
CH
2 C1 2 to improve solubility. The mixture was stirred for 18 hours at room temperature, cooled back to 0°C, acidified with 1 N HC1, and partitioned between 20 mL of 1 N HCI and 2 X 20 mL of CH 2 The combined organic layers were dried (MgSO,), filtered, and concentrated to give 505 mg of yellow solid. Purification by silica gel chromatography (EtOAc/hexanes) provided 146 mg of compound 43 as a crystalline solid: mp 67- 69 0 C; 'H NMR (CDCI 3 8 3.50-3.80 28H), 4.22 12H), 4.43 16H), 7.40 (m, 16H), 8.30 16H).
Compound 44 A solution of 476 mg (2.16 mmol) of mono-CBZ-piperazine in 2.0 mL of CH 2
CI,
was added to a 0 C solution of 400 mg (0.18 mmol) of compound 43 and 300 L (2.16 mmol) of Et 3 N in 2.0 mL of CH 2 C1,. The reaction mixture was stirred for 18 hours at room temperature, cooled to 0°C, and acidified with 1 N HCI. The mixture was partitioned between 40 mL of 1 N HCI and 3 X 40-mL ofCH 2 C1 2 The combined organic layers were washed with 3 X 40 mL of saturated NaHCO 3 solution, dried (MgSO 4 filtered, and concentrated to give 483 mg of compound 44 as a sticky white solid which was pure enough for use in the next step: 'H NMR (CDCl,) 8 3.36-3.60 88H), 3.66 4H), 4.21 (brd, 28H), 5.15, 16H), 7.36 (brd s, Compound 44a Compound 44 (150 mg, 0.054 mmol) was dissolved in 2 mL of 30% HBr/HOAc.
The mixture was stirred for 30 minutes at room temperature, and the HBr salt was precipitated by addition of Et 2 O. The precipitate was washed twice with EtO, and dried under vacuum.
WO 00/34231 PCT/US99/29339 Compound The precipitate, compound 44a, was dissolved in 20 mL of H 2 0. The mixture was brought to pH 12 by addition of 10 N NaOH and extracted with six 20 mL portions of 4/1 CHC1 2 /MeOH. The combined organic layers were dried (MgSO 4 filtered, and concentrated to provide the free amine. The free amine was dissolved in 4 mL of CH 3
CN,
mL of MeOH was added to improve solubility, and the solution was stirred at 0 C while a solution of 112 mg (0.65 mmol) of chloroacetic anhydride in 1 mL of CH 3 CN was added. The mixture was stirred at room temperature for 2 hours and concentrated to give 111 mg of an oil. Purification by preparative HPLC C18 column, gradient 35-55% B, A 0.1% TFA/H,O and B 0.1% TFA/CH 3 CN) provided 20 mg of compound 45 as a viscous oil: 'H NMR (CDCI 3 8 3.40-3.78 92H), 4.15 16H), 4.28, 28H).
Example 12 Synthesis of Tetramer and Octamer of ADPIDEG Using Core Propagation Approach A chemical scheme for the preparation of an octamer of ADP/DEG is shown in Figures 18A and 18B. The di-para-nitrophenylcarbonate derivative of diethyleneglycol, compound 37 (from which the "core" is derived) was reacted with 2-amino-i,3propanediol to yield the tetrahydroxy compound, compound 46. Compound 46 was reacted with para-nitrophenylchloroformate to yield the tetra para-nitrophenylcarbonate compound (compound 47). Compound 47 was then reacted with 2-amino-1,3-propanediol to yield the octahydroxy compound, compound 47a. Compound 47a was then reacted with paranitrophenylchloroformate to yield the octapara-nitrophenylcarbonate compound (compound 48). The para-nitrophenylcarbonate (PNP) group was then converted to a carbamate group by reaction with mono-CBZ-protected piperazine, yielding compound 48a. The terminal CBZ-protected amino groups were then converted to the hydrobromide salt of amino group (compound 48b), and further reacted with chloroacetic anhydride to yield reactive chloroacetyl groups at each of the termini in compound 48c.
WO 00/34231 PCT/S99/29339 Compound 46 A solution of compound 37 in pyridine is added to a 0°C solution of 3 eq. of 2amino-1,3-propanediol in pyridine. The cooling bath is removed, and the mixture is stirred for 5 hours at room temperature. Compound 46 can be isolated if desired, however, it is generally more convenient to isolate after forming the 4-nitrophenylcarbonate ester.
Compound 47 The mixture above is cooled back to o0C, a solution of 10 eq. of 4nitrophenylchloroformate in 60 mL of CH 2 C12 is added, and the mixture is stirred for hours at room temperature. The mixture is cooled back to 0 C, acidified with 1 N HC1, and is partitioned between I N HCI and CH 2
CI
2 The combined organic layers are dried (MgSO 4 filtered, and concentrated. Purification by silica gel chromatography provides compound 47.
Compound 47a A solution of compound 47 in pyridine is added to a 0°C solution of 6 eq. of 2amino-1,3-propanediol in pyridine. The cooling bath is removed, and the mixture is stirred for 20 hours at room temperature to yield compound 47a, which is used in the next step.
Compound 48 The mixture above is cooled back to o0C, and a solution of 4nitrophenylchloroformate is added. The mixture is stirred for 18 hours at room temperature, cooled back to 0°C, acidified with 1 N HC1, and partitioned between 1 N HCI and CH 2 C1 2 The combined organic layers are dried (MgSO,), filtered, and concentrated.
Purification by silica gel chromatography provides compound 48.
WO 00/34231 PCT/US99/29339 Compound 48a In a manner similar to that for compound 44 above, a solution of mono-CBZpiperazine in CH 2 Cl 2 is added to a 0°C solution of compound 43 and Et 3 N in CH 2 Cl 2 The reaction mixture was stirred for 18 hours at room temperature, cooled to 0°C, and acidified with 1 N HCI. The mixture was partitioned between 1 N HCI and CH 2 Cl 2 The combined organic layers are washed with saturated NaHC0 3 solution, dried (MgSO,), filtered, and concentrated to give compound 48a, for use in the next step.
Compound 48b In a manner similar to that for compound 44a above, compound 48a is dissolved in HBr/HOAc. The mixture is stirred for 30 minutes at room temperature, and the HBr salt precipitated by addition of Et20. The precipitate is washed with Et2O, and dried under vacuum.
Compound 48c In a manner similar to that for compound 45 above, the precipitate, compound 48b, 13 ic riicslv1 ed in The mlvhtir i hrmrnrht ,t-i 1 a;r;itirn ,f 1T N NKT~- o nr extracted with 4/1 CH 2 C1 2 /MeOH. The combined organic layers are dried (MgSO,), filtered, and concentrated to provide the free amine. The free amine is dissolved in CH 3
CN,
MeOH is added to improve solubility, and the solution is stirred at 0°C while a solution of chloroacetic anhydride in CH 3 CN is added. The mixture was stirred at room temperature for 2 hours and concentrated to give crude compound 48c, which is purified by preparative
HPLC.
WO 00/34231 PCT/US99/29339 Example 13 Synthesis of Octamer of DEA/PE Using Core Propagation Approach A chemical scheme for the preparation of an octamer of DEA/PE is shown in Figure 19. Pentaerythritol (from which the "core" is derived) was reacted with paranitrophenylchloroformate to yield the tetrapara-nitrophenylcarbonate compound (compound 49). Compound 49 was then reacted with diethanolamine to form the octahydroxy compound, compound 49a. Compound 49a was then reacted withparanitrophenylchloroformate to yield the octa para-nitrophenylcarbonate compound (compound 50). The para-nitrophenylcarbonate (PNP) group was then converted to a carbamate group by reaction with mono-N-BOC-ethylenediamine, yielding compound 51.
Compound 49 Pentaerythritol tetrakis-4-nitrophenylcarbonate Pyridine (950 p.L, 11.74 mmol) was slowly added to a 0 C solution of 100 mg (0.734 mmol) of pentaerythritol and 1.18 g (5.88 mmol) of 4-nitrophenylchloroformate in mL of CH 2 Cl2. The cooling bath was removed, and the mixture was stirred for 24 hours at room temperature. The mixture was cooled back to 0°C, acidified with 1 N HCI, and nartitioned hbetxrPen 5 mL of I N HC! and 2 X 50 mL of CHCl 2 Th com ed org A 2 12- 111" ""'UAI cU Ull ll layers were dried (MgSO,), filtered, and concentrated to give 1.123 g of a white solid.
Purification by silica gel chromatography (EtOAc/hexanes followed by CH,C,2/MeOH) provided 128 mg of compound 49 as a white crystalline solid: mp 175°C; 'H NMR (CDC13) 8 4.61 8H), 7.40, 8H), 8.30 8H).
Compound 49a To solution of 120 mg (0.150 mmol) of compound 49 in 1.6 mL of pyridine at 0 C was added 87 jxL (95 mg, 0.90 mmol) of diethanolamine. The cooling bath was removed, and the mixture was stirred for 7 hours.at room temperature, and cooled back to 0 C, to yield compound 49a, which was used as is in the next step.
WO 00/34231 PCT/US99/29339 Compound A solution of 756 mg (3.75 mmol) of 4-nitrophenylchloroformate in 3 mL of CH,C1 2 was added the mixture above. The mixture was stirred for 18 hours at room temperature, cooled back to 0°C, acidified with 1 N HCI, and partitioned between 20 mL of 1 N HCI and 2 X 20 mL of CH 2 Cl,. The combined organic layers were dried (MgSO 4 filtered, and concentrated to give 819 mg of sticky yellow solid. Purification by silica gel chromatography (EtOAc/hexanes and CH 2 C1 2 /MeOH) provided 134 mg of compound 50 as a sticky viscous oil with some impurities: 'H NMR (CDCl 3 6 3.69 (m, 16H), 4.31 8H), 4.41 16H), 7.39 16H), 8.25 16H).
Compound 51 A solution of compound 50 is treated with 10 eq. of mono-N-BOC-ethylenediamine in pyridine and CH 2 Cl 2 The mixture is stirred at room temperature until complete as evidenced by TLC, and partitioned between 1 N HCI and CH 2 Cl 2 The combined organic layers is dried (MgSO,), filtered, and concentrated to give crude product. Purification by silica gel chromatography (EtOAc/hexanes and CHCI,/MeOH) provides compound 51.
Example 14 Solid Phase Synthesis of Tetramer of DEA/DEG Using Segmental Approach A chemical scheme for the solid phase synthesis of a tetramer of octamer of DEA/DEG is shown in Figures 20A and 20B. Wang resin, having terminal hydroxy groups, was reacted with para-nitrophenylchloroformate to yield the paranitrophenylcarbonate compound (compound 52). Compound 52 was then reacted with diethanolamine to form the dihydroxy compound, compound 52a. Compound 52a was then reacted with para-nitrophenylchloroformate to yield the di para-nitrophenylcarbonate compound (compound 52b). The para-nitrophenylcarbonate (PNP) group was then converted to a carbamate group by reaction with mono-CBZ-protected piperazine, yielding WO 00/34231 PCT/US99/29339 compound 53. The CBZ-protected compound was then cleaved from the resin, and reacted with diethyleneglycol bis chloroformate (from which the "core" is derived), to yield the tetra-CBZ-protected amino compound, compound 40. The terminal CBZ-protected amino groups may be converted to the hydrobromide salt of amino group, and further reacted with chloroacetic anhydride to yield reactive chloroacetyl groups at each of the termini.
Compound 52 Wang resin (25 mg, subst. 0.58 mmol/g, 0.0145 mmol) was washed with CH 2 Cl 2 The resin was suspended in 580 gL of CH 2 C1 2 and 15 mg (0.145 mmol) of 4nitrophenylchloroformate was added followed by 97 pL of pyridine. After gentle agitation of the mixture for 4 hours, the resin was washed with CH 2 Cl, and dried, to yield compound 52.
Compound 52a The resin was then suspended in 410 pL of CH 2 C12, and 71 mg (0.673 mmol) of diethanolamine (410 gL of a solution of 82.5 mg of diethanolamine dissolved in 493 pL of pyridine). After gentle agitation of the mixture for 16 hours, the resin was washed with 2- C2-1C2 anud cdrd, to yield compound 52a.
Compound 52b To the resin was added 580 pL of CH 2 Cl 2 and to the mixture was added 15.2 mg (0.145 mmol) of 4-nitrophenylchloroformate followed by 97 pL of pyridine. After gentle agitation of the mixture for 4 hours, the resin was washed with CH 2 Cl 2 and dried, to yield compound 52b.
WO 00/34231 PCT/US99/29339 Compound 53 To the resin was added 410 tL of CH 2 C12, and to the mixture was added 130 pL of mono-CBZ-piperazine followed by 410 pL of pyridine. After gentle agitation of the mixture for 18 hours, the resin was washed with CH 2 C1 2 and dried, to yield compound 53.
Compound 54 To the resin was added 1 mL of 10% TFA in CH 2
CI
2 the mixture was agitated for 10 min, and the mixture was filtered. The TFA treatment was repeated twice, and the combined filtrates were combined and concentrated to give 3 mg of compound 54; 'H NMR (CDC 3 5 3.13 4H), 3.48 8H), 3.80 4H), 4.50 1H), 5.18 4H), 7.37 (brd s, 10H); MS (ESI) calculated for C 30 oH 4
N
5 0 8 598. Found: 598.
Compound To a solution of 2.1 eq. of compound 54 and 2.1 eq. of Et 3 N in CH 2
CI
2 at o0C is added a solution of 1 eq. of diethyleneglycol bis-chloroformate in CH 2
CI
2 The mixture is stirred for at room temperature and concentrated to give crude compound 40 which can be nnrifid p ili eI r r J .1t I.tu LtLJatJL apiyn.
Example Compound 39b To a solution of 3.17 g (3.08 mmol) of compound 39 in 35 mL of CH,C 2 at o0C was added 2.6 mL of Et 3 N followed by a solution of 3.26 g (18.49 mmol) of mono-N-Bocethylenediamine (also referred to as tert-butyl N-( 2 -aminoethyl)carbamate, Aldrich Chemical Co.) in 30 mL of CH 2
CI
2 The mixture was stirred at room temperature for 18 hours, cooled to 00, and acidified with 1 N HCI The mixture was then partitioned between 150 mL of 1 N HCI and three 100 mL portions of CH 2
CI
2 The organic layers were combined and washed with three portions of saturated sodium bicarbonate solution, dried (MgSO 4 filtered and concentrated to provide 3.17 g of yellow solid. Purification by silica WO 00/34231 PCT/US99/29339 gel chromatography (step gradient 98/2 to 95/5 to 90/10 CH 2 C1 2 /MeOH) provided 2.76 g of compound 39b as a white solid. 'H NMR (CDCI 3 5 1.45 36H), 3.23 16H), 3.50 8H), 3.72 4H), 4.19 8H), 4.26 4H), 5.38 (brd s, 4H), 5.80 (brd s, 2H), 6.00 (brd s, 2H); mass spectrum (ES) m/z calculated for C 46
H
4
N,
0 0 2 1135.
Found: 1135.
Compound 39c A solution of 1 g (9.42 mmol) of diethylene glycol in 20 mL of EtOAc was added to a solution of 3.82 g (23.5 mmol) of carbonyldiimidazole in 80 mL EtOAc and the resulting mixture was stirred for 2 hours at room temperature. The mixture was concentrated to an oily solid, and the product was purified by silica gel chromatography (97/2 CH 2
C
2 /MeOH) to give 2.04 g of the bis-imidazolide of diethylene glycol as a white solid: 'H NMR (CDCl) 8 3.87 4H), 4.58 4H), 7.08 2H), 7.41 2H), 8.16 2H). A solution of 50 mg (0.17 mmol) of the bis-imidazolide of diethylene glycol in 1 mL of CH 2 Cl 2 was added to a solution of 54 mg (0.51) mmol) of diethanolamine and 82 pL (80.6 mg, 1.02 mmol) of pyridine in 0.5 mL of CH 2 Cl 2 The mixture was stirred at room temperature for four hours, and to the mixture was added a solution of 248 mg (1.53 mmol) of carbonyldiimidazole in 5 mL of CH 2
CI
2 The mixture was stirred at room temperature for 1.5 hours and concentrated to nn oily snlild Purification, bry silica ge. chromatograph. (98/ I V*II Vj Ja u fy,.i S4 iIIIauLLVlalJl iiy QyO/IZ CHC1,/MeOH) provided 103 mg of the multivalent activated carbonate derivative compound 39c, including minor impurities. The resulting oil crystallized when placed in the freezer: 'H NMR (CDCl 3 3.71 12H), 4.32 4H), 4.59 8H), 7.10 4H), 7.43 4H), 8.18 4H); mass spectrum (ES) m/z (relative intensity) 380 (100), 443 (18), 512 no parent ion observed.

Claims (8)

1. A compound having the structure of the following formula: Formula III R c 1-G2-0-C-N-+G-O- Sn is a positive integer from 1 to y, and y 3 are independently 1 or 2; S210 J independently denotes either an oxygen atom or a covalent bond; :e*6 RC is selected from the group consisting of: 9 hydrocarbyl groups having from 1 to 20 carbon atoms;
15.. organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having om 1 to 20 carbon atoms; ooo organic groups consisting nly of carbon, oxygen, sulfur, and hydrogen 000 "atoms, and having from I to 20 carbon atoms; :each G, G, and G is independently selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; each RN is independently selected from the group consisting of: hydrogen; m:\specificatlon3\090000\93000MW3827clmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:47 FAX 61 3 9663 3099 FB RICE CO. la 020 81 linear or branched alkyl groups -having from I to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to carbon atoms; aromatic groups having fromn 6 to 20 carbon atoms; heteroaromatic groups havin*g from 3 to 20 carbon atoms; each Z is independently selected from the group consisting of: -H -C(=O)ORC' -C(=O)NR AR" wherein: each RcAR is an organic group comprising from 1 to about 20 carbon atoms; each RER~ is an organic group comprising from I to about 20 carbon atoms; each group -NRARB is independently selected from the group consisting of: 0:15 -NH 2 NHRA _NRAB wherein each monovalent RA and R13 and each divalent is independently an organic group comprising from i to 20 carbon atoms, and further comprising a rP;VitVJ rCrniIAsinCr ffunctinnal grouun: wherein the compound has at least three carbamzte linkages and at least two branches. 2. A compound, wherein the compound is valency platform molecule having the structure of the following formula: Formula I m:\specificatorw\090000\93000\93827cdmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:47 FAX 61 3 9663 3099 FB RICE CO. 10021 82 wherein: n is a positive integer from 1 to y9, y2, and y 3 are independently 1 or 2; J is an oxygen atom; Rc is selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each 0 2 and G 3 is independently selected from the group consisting of: *o hydrocarbyl groups having from 1 to 20 carbon atoms; 15 organic groups consisting only of carbon, oxygen, and hydrogen atoms, and *o having from 1 to 20 carbon atoms; S* organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; each R is independently selected from the group consisting of: 20 hydrogen; *linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to SO.. *carbon atoms; a gf aromatic groups having from 6 to 20 carbon atoms; 25 heteroaromatic groups having from 3 to 20 carbon atoms; each Z is independently selected from the group consisting of: -H B -C(=O)R 1 a B wherein: m:\specifications\090000\93000\93827delmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 04 10:47 FAX 61 3 9663 3099 FB RICE CO. 1022 83 each Rc^A is an organic group comprising from 1 to about 20 carbon atoms; each Rm E s T is an organic group comprising from 1 to about 20 carbon atoms; each group -N'ARB is independently selected from the group consisting of: -NH 2 -NHRA -NR^R' -NR' wherein each monovalent R and R5 and each divalent R AB is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group; wherein the compound has at least three carbamate linkages and at least two branches. 3. A compound, wherein the compound is valency platform molecule having the 15 structure of the following formula: o 0 Formuln is a positive I to 10; RC is selected from the group consisting of- h o bl having f rom I to 20 carbon atoms;1 to 10; y and y' are independently 1 or 2; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; m:\specificaons090000193000 93827ctmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:47 FAX 61 3 9663 3099 FB RICE CO. 0]023 84 organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each G1, G2, and G 3 is independently selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and hawing from 1 to 20 carbon atoms; each RN is independently selected from the group consisting of: hydrogen; 9* linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to 15 carbon atoms; 9 aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; each Z is independently selected from the group consisting of: -H -C(-O)OR C A .9 ESTER 9o0 fl -C(=O)NRAR i• wherein: each R cA R' is an organic group comprising from I to about 20 carbon atoms; each RE S T ER is an organic group comprising from 1 to about 20 carbon atoms; each group -NRAR is independently selected from the group consisting of: -NH 2 -NHR A _NRARB -NRA rn:\specificaUons\090000\9300093827dmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:48 FAX 61 3 9663 3099 FB RICE CO. a2024 wherein each monovalent R' and R 8 and each divalent R^A is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group; wherein the compound has at least three carbamate linkages and at least two branches. 4. A compound according to any one of the preceding claims, wherein n is a positive integer from 2 to 4. 5. A compound according to any one of the preceding claims, wherein y2, and y 3 when present, are each 2. S S 6. A compound according to any one of claims 1, 3, 4 or 5, wherein J is an oxygen atom. C 7. A compound according to any one of claims 1, 3, 4 or 5, wherein J is a covalent *bond. 8. A compound according to any one of the preceding claims, wherein R C is Good, 20 selected from the group consisting ofhydrocarbyl groups having from 1 to G« 6 carbon atoms. @4cC 4 S• 9. A compound according to any one of claims 1 to 7, wherein R c is selected from 4c• the group consisting of: C -CH2-; -CH 2 CH2-; -CH2CH 2 CH2-; I CH, I 2 S and m:\specifications\09000093000\3827dmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:48 FAX 61 3 9663 3099 FB RICE CO. a025 86 A compound according to any one of claims 1 to 7, wherein Rc is selected from the group consisting of organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms. 11. A compound according to any one of claims 1 to 7, wherein Rc is: S+CH2-CH 2 -0 C0) CH 2 wherein p is a positive integer from 2 to *ooo i 12. A compound according to any one of the preceding claims, wherein each G 2 and G 3 when present, is independently selected from the group consisting of hydrocarbyl groups having from 1 to 20 carbon atoms. 13. A compound according to any one of claims I to 11, wherein each G, G, and ~G 3 when present, is wherein q is a positive integer from 1 to *2 0 *0o@ 14. A compound according to any one of claims I to 11, wherein each G, and G 3 when present, is independently selected from the group consisting of 0 organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms. A compound according to any one of claims 1 to 11, wherein each Gi', G2, and G3, when present, is: ^CH2-CH2-0 )CM2-CH2- p- 1 wherein p is a positive integer from 2 to m:\specificaUons\O0000\93000\93827dmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:48 FAX 61 3 9663 3099 FB RICE CO. 026 87
16. A compound according to any one of the preceding claims, wherein each RN is independently selected from the group consisting of -CH 3 and -CH 2 CH 3
17. A compound according to any one of the preceding claims, wherein each Z is NRARB and is independently selected from the group consisting of: -N N-H 0@St S S S 0 0@SO l-N O N-C-o-CH2- S--N NH.HBr 0 N N-C-CHz-X NH CH2 +NH 2 o CH3 S II I S-NH-CH 2 CH 2 -NH-C-O-C-CH 3 CH 3 -NH CH 2 C20CH 2 CH2-NH 2
18. A compound having the structure of one of the following formulae: Formula V o II -J-C-N- R" y2 y 1 m:\spectfications\090000\93000\93827clmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:48 FAX 61 3 9663 3099 FB RICE CO. Z]027 88 Formula %n 0 0i0 RC- J-C-N-C -0CNG-I--- N N y 1 wherein: n is a positive integer from 1 to y9, y2, and y are independently a positive integer from 1 to J independently denotes either an oxygen atom or a covalent bond; RC is selected from the group consisting of: hydrocarbyl groups having from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms. and having from 1 to 20 carbon atoms; 10 organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each 02, and G3 is independently selected from the group consisting of: hydrocarbyl groups having from I to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having fom 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from i to 20 carbon atoms; each RN is independently selected from the group consisting of: hydrogen; linear or branched alkyl groups having from I to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from I to carbon atoms; aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; m:\bspecficatons\O9000093000\93827cdmhxg.do COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 04 10:49 FAX 61 3 9663 3099 FB RICE CO. Q1028 89 each Z is independently selected from the group consisting of: -H -C(=O)OR C A -C(=O)RESTER -C(=O)NRARB wherein: each RcAR B is an organic group comprising from 1 to about 20 carbon atoms; each R E STER is an organic group comprising from 1 to about 20 carbon atoms; each group -NRARB is independently selected from the group consisting of: -NH2 -NHR^ -NR^R -NR wherein each monovalent RA and RB and each divalent Rk^ is independently an 15 organic group comprising from I to 20 carbon atoms, and further comprising a reactive conjugating functional group; :wherein the compound has at least three carbamate linkages and at least two branches. 20 19. A compound having the structure of the following formula: ^Formula IV R C -J-C-N-G O-Z wherein: n is a positive integer from 1 to y y 2 and y 3 are independently a positive integer from 1 to J is an oxygen atom; Rc is selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; m:\specifications\090000\93000\93827dmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:49 FAX 61 3 9663 3099 FB RICE CO. ]029 organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each G2, and G 3 is independently selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen S: atoms, and having from 1 to 20 carbon atoms; each RN is independently selected from the group consisting of: S* hydrogen; 15 linear or branched alkyl groups having from I to 15 carbon atoms; *alkyl groups comprising an alicyclic structure and having from 1 to o** S* carbon atoms; aromatic groups having from 6 to 20 carbon atoms; *:.'"heteroaromatic groups having from 3 to 20 carbon atoms; 20 each Z is independently selected from the group consisting of: 0 -C-O CA -C(=O)ORc M -C(=O)R 0 sT -C(--CO)NRARB 0 25 wherein: each R c ARB is an organic group comprising from I to about 20 carbon atoms; each Rm s ER is an organic group comprising from 1 to about 20 carbon atoms; each group -NRARB is independently selected from the group consisting of: -NH2 -NIR A -NR^R B m:\specifcations\090000\93000\93827ctmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:49 FAX 61 3 9663 3099 FB RICE CO. ZI030 91 -NR AB wherein each monovalent RA and RB and each divalent eel is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group; and wherein the compound has at least three carbamnate linkages and at least two branches. A compound according to claim 18, wherein said compound has the structure of Formula V.
21. A compound according to claim 18, wherein said compound has the structure of Formula VI.
22. A compound accordinig to any one of claims 18 to 2 1, wherein ni is a positive integer from 2to 4. S23. A compound according to any one of claims 18 to 22, wherein y' ,y 2 and y', when present, are each 2.
2052. A compound according to any one of claimis 18 or 20 to 23, wherein J is an uxygnatoms. 25. A compound according to any one of claims 18 to 205o, wherein is aece from the group consisting of-hdoablgop ain rm1t 0cro m:\.spscificatioisXO90O\930009827clmhxg.doC COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date (Y4-A-d) 2004-07-07 07/07 '04 10:49 FAX 61 3 9663 3099 FB RICE CO. 12031 92 -CH 2 -CH 2 CH 2 -CH 2 CHzCH2-; -CH 2 -C-CH- I CH 2 ;and 28. A compound according to any one of claims 18 to 25, wherein Rc is selected i from the group consisting of organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms. *29. A compound according to any one of claims 18 to 25, wherein Rc is: 0 CH-CHz-O- -CH 2 -CH 2 p-1 wherein p is a positive integer from 2 to 0 3 ccmpc'.d acc;rding to any one nof clnlimr I tn 29, wherein each G 1 G2. and G 3 when present, is independently selected from the group consisting of hydrocarbyl groups having from I to 20 carbon atoms. 000 31. A compound according to any one of claims 18 to 29, wherein each G2, and G 3 when present, is selected from the group consisting of: 2CH2- -CH m:\specifications\090000\9300O93827dmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:49 FAX 61 3 9663 3099 FB RICE CO. 1032 93 CH2-^ CH-- d C-CH 2 CH CHg-^ 32. A compound according to any one of claims 18 to 29, wherein each G 2 and G 3 when present, is independently selected from the group consisting of organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms. 10 33. A compound according to any one of claims 18 to 32, wherein each RN is independently selected from the group consisting of-H, -CH 3 and -CH 2 CH 3 34. A compound according to any one of claims 18 to 33, wherein each Z is -NRA^R and is independently selected from the group consisting of: -N N-H o o -N N-C-CH 2 -X -NH- -N NH 2 m:\specifications\090000\93000\93827dmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:50 FAX 61 3 9663 3099 FB RICE CO, 1033 07/07 04 10:50 FAX 61 3 9663 3099 figIgE.A Q, 94 0 CH 3 II I -NH-CH 2 CH 2 -NH-C-O-C-CH 3 I CH 3 and S--NCHCH 2 CH20 H 2 H 2 -NH 2 A conjugate comprising a compound according to any one of the preceding claims covalently linked to one or more biologically active molecules. 36. A conjugate according to claim 35, wherein said biologically active molecules are selected from the group consisting of: oligonucleotides, peptides, polypeptides, proteins, antibodies, saccharides, polysaccharides, epitopes, ;10 •10 mimotopes, and drugs, 37. A composition, comprising compounds according to any one of claims 1 to 34, o wherein each said compound comprises at least 4 reactive conjugating functional groups; and wherein said compounds have a polydispersity less than about 1.2. 0*@0 S38, The composition of claim 37, wherein said compounds have a polydispersity less than about 1.07. *s C 20 39. The composition of claim 37, wherein each said compound comprises at least 4 carbamate linkages and at least 8 reactive conjugating functional groups. The composition of claim 37, wherein each said compound comprises at least 4 identical reactive conjugating functional groups. 41. The composition of claim 37, wherein each said compound comprises 3 to 32 carbamate linkages and 4 to 64 reactive conjugating functional groups. m:\specifications\090000\90000\93827cmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:50 FAX 61 3 9663 3099 FB RICE CO. i 034 42. The composition of claim 37, wherein each said compound is linked via at least one of said reactive conjugating functional groups to one or more biologically active molecules. 43. A composition comprising compounds according to any one of claims 1 to 34, wherein each said compound comprises at least four terminal groups; and wherein said compounds have a polydispersity less than about 1.2, 44. The composition of claim 43, wherein said compounds have a polydispersity 0 less than about 1.07. 45. The composition of claim 43, wherein each said compound comprises at least 4 carbamate linkages, at least 4 branches and at least 8 terminal groups, 0@ S S S* S S.o. S. 5@ *0 en.e 0 S 0@* e S f* Sn 5 en .550 S te eo *o *l o ~l ow 15 46. The compound of claim 2, wherein Z does not comprise a peptide. 47. The compound of claim 3, wherein Z does not comprise a peptide. 48. A compound having the structure of the following formula: Formula I r n J-C-N-^G Z R N J 2-y'l wherein: n is a positive integer from 1 to y2, and y3 are independently 1 or 2; J is an oxygen atom; R c is selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; m:\specificatjons\090000\93000\93827dmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:50 FAX 61 3 9663 3099 FB RICE CO. 035 96 organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each and G 3 is independently selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; S. organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; *oo...each RN is independently selected from the group consisting of: hydrogen; 0 15 linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to carbon atoms; **aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; 20 each Z is independently selected from the group consisting of; -H -C(=O)OR E C(O)RS -C(Q-O)NR R wherein: each RcAn" is an organic group comprising from 1 to about 20 carbon atoms; each RTER is an organic group comprising from 1 to about 20 carbon atoms; each group -NRA^RB is independently selected from the group consisting of: -NH 2 -NI-^ -NR^R m:\specfflcations\090000\9300093827cimhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:50 FAX 61 3 9663 3099 FB RICE CO. Z036 97 -NRAB wherein each monovalent R^ and RB and each divalent R A is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group; wherein Z does not comprise a peptide; and wherein the compound has at least three carbaminate linkages and at least two branches. 49. A compound having the structure of the following formula: Formula II o' o F *I I'NI °I9 [I II 111Y1I 2_[1 y l R n L I 2-V 1 2-y Y wherein: n is a positive integer from 1 to 15 y 2 and y3 are independently I or 2; J independently denotes either an oxygen atom or a covalent bond; RC is selected from the group consisting of- hydrocarbyl groups having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atomns; organic groups consisting only of carbon, oxygen, sulfur, and hydrogen atoms, and having from 1 to 20 carbon atoms; each G1, G2, and G 3 is independently selected from the group consisting of: hydrocarbyl groups having from 1 to 20 carbon atoms; m:\speCflcatlons\090000\93000\3827dmhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/'07 04 10:50 FAI 61 3 9663 3099 FB RICE CO. 0037 98 organic groups consisting only of carbon, oxygen, and hydrogen atoms, and having from 1 to 20 carbon atoms; organic groups consisting only of carbon, oxygen, nitrogen, and hydrogen atoms, and having from 1 to 20 carbon atoms; each R is independently selected from the group consisting of: hydrogen; linear or branched alkyl groups having from 1 to 15 carbon atoms; alkyl groups comprising an alicyclic structure and having from 1 to carbon atoms; aromatic groups having from 6 to 20 carbon atoms; heteroaromatic groups having from 3 to 20 carbon atoms; each Z is independently selected from the group consisting of: -H -C(=O)ORCA F STER 15 *AB -C(=O)NRAR3 wherein: each R CA P is an organic group comprising from 1 to about 20 carbon atoms; ooo*- ~each R sr 5 is an organic group comprising from 1 to about 20 carbon atoms; 20 each group -NRARB is independently selected from the group consisting of: -NH2 -NR A oAR B -NRA 8 ,NRAB wherein each monovalent RA and R B and each divalent R A is independently an organic group comprising from 1 to 20 carbon atoms, and further comprising a reactive conjugating functional group; wherein Z does not comprise a peptide; and wherein the compound has at least three carbamate linkages and at least two branches. m:\specifications\090000\93000\93827dcimhxg.doc COMS ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07 07/07 '04 10:51 FA. 61 3 9663 3099 FB RICE CO. _i 038 99 A compound substantially as hereinbefore described with reference to the examples and/or the preferred embodiments and excluding, if any, comparative examples. 51. A conjugate substantially as hereinbefore described with reference to the examples and/or the preferred embodiments and excluding, if any, comparative examples. 52. A composition substantially as hereinbefore described with reference to the examples and/or the preferred embodiments and excluding, if any, comparative examples. 9 0 9 9 99 9e 9 909* 9 9 *909 S 9 .9 9 9@99 @994 4 9 9 9.9 4999 9.. 9999 9 Dated this seventh day of July 2004 La Jolla Pharmaceutical Company Patent Attorneys for the Applicant F B RICE CO m:\specifications\090000\93000\93827cimhxg.doc COMS 0ID No: SBMI-00819078 Received by IP Australia: Time 10:52 Date 2004-07-07
AU20496/00A 1998-12-09 1999-12-09 Molecular scaffolds acting as templates comprising carbamate linkages Ceased AU775925B2 (en)

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US11164198P 1998-12-09 1998-12-09
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US09/457607 1999-12-08
US09/457,607 US6458953B1 (en) 1998-12-09 1999-12-08 Valency platform molecules comprising carbamate linkages
PCT/US1999/029339 WO2000034231A1 (en) 1998-12-09 1999-12-09 Molecular scaffolds acting as templates comprising carbamate linkages

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EP0278621A1 (en) * 1987-02-06 1988-08-17 Takeda Chemical Industries, Ltd. Substituted amine derivatives, their production and use
US5552391A (en) * 1990-01-16 1996-09-03 La Jolla Pharmaceutical Company Chemically-defined non-polymeric valency platform molecules and conjugates thereof

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EP0278621A1 (en) * 1987-02-06 1988-08-17 Takeda Chemical Industries, Ltd. Substituted amine derivatives, their production and use
US5552391A (en) * 1990-01-16 1996-09-03 La Jolla Pharmaceutical Company Chemically-defined non-polymeric valency platform molecules and conjugates thereof

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