AU678168B2 - Oxazolone derived materials - Google Patents

Description

ICORkECT6~ q f q3 pages 4, S. 26-28, 4i, 4S, S1. S6, 60462, 64, 67, 108 and 109.

Pci' dcscripfion, replaced by new pages 4, 411, 5, S11, 26-28, 43, 45, S1, 46, 6O(W, 64, 67, 6711, 108 and 109; due to late INTERNATIONAL APPLtransmittal by th eevn Office is RATION TREATY (PCT) (so) International Patent Classification s (11) International Publication Number: WO 94/00509 C08G 69/10, C07D 263/00 Al (3 nentoa ulcto ae aur 94(60.4 C07C 229/00 (3 nentoa ulcto ae aur 94(60.4 (21) International Application Number: PCT/US93/06240 (72) Inventor; and Inventor/Applicant (for LIS onjls'): HOGAN, Joseph, Jr.

(22) International Filing Date: 30 June 1993 (30.06.93) IUSIUSJ; 50 Oak Avenue, Belmont, MA 02178 (US).

(74) Agents- CORUZZI, Laura, A. et al.; Pennie Edmonds, Priority data: 1155 Avenue of the Americas, New York, NY 10036 906,756 30 June 1992 (30.06.92) us (US).

041,562 2 April 1993 (02.04.93) us (81) Designated States: AT, AU, BB, BG, BR, BY, CA, CH, Parent Applications or Grants CZ, DE, DK., ES, Fl, GB, HU, JP, KP, KR, KZ, LK, (63) Related by Continuation LU, MG, MN, MW,. NL, NO, NZ, PL, PT, RO, RU, us 906,756 (CIP) SD, SE, SK, UA, US, European patent (AT, BE, CH, Filed on 30OJune 1992 (30.06.92) DE, DK, ES, FR, GB, GR, IE, IT, LU, MC, NL, PT, us 041,562 (CIP) SE), OAPI patent (BF, BJ, CF, CG, Cl, CM, GA, GN, Filed on 2 April 1993 (02.04.93) ML, MR, NE, SN, TD, TG).

(71) Applicant (for all designated States except US): LEGOMER Published PARTNERS, L.P. [US/US]; 50 Oak Avenue, Belmont, With international search report.

MA 02178 Before the expiration of the time limit for amending the claims and to be republished in the event of the rccipt of amendments.

6786 (54)Title: OXAZOLONE DERIVED MATERIALS (57) Abstract The design and synthesis or novel oxazolone-derived molecular modules and the use of the modules in the construction of new molecules and fabricated materials is disclosed. The new molecules and fabricated materials are molecular recognition agents useful in the design and synthesis of drugs, and have applications in separations and materials science.

0(Rcfcrred to in PCTr Gazette No. 07/1994, Section 11) WO 94/00509 PCT/US93/06240 "OXAZOLONE DERIVED MATERIALS".

1. FIELD OF THE INVENTION The present invention relates to the logical development of biochemical and biopharmaceutical agents and of new materials, including fabricated materials such as fibers, beads, films and gels. Specifically, the invention relates to the development of molecular modules derived from oxazolone (azlactone) and related structures, and to the use of these modules in the assembly of molecules and fabricated materials with tailored properties, which are determined by the contributions of the individual building modules. The molecular modules of the invention are preferably chiral, and can be used to synthesize new compounds and fabricated materials which are able to recognize biological receptors, enzymes, genetic materials, and other chiral molecules, and are thus of great interest in the fields of biopharmaceuticals, separation and materials science.

2. BACKGROUND OF THE INVENTION The discovery of new molecules has traditionally focused in two broad areas, biologically active molecules, which are used as drugs for the treatment of life-threatening diseases, and new materials, which are used in commercial, especially hightechnological applications. In both areas, the strategy used to discover new molecules has involved two basic operations: a more or less random choice of a molecular candidate, prepared either via chemical synthesis or isolated from natural sources, and (ii) the testing of the molecular candidate for the property or properties of interest. This discovery cycle is repeated indefinitely until a molecule possessing the desirable WO 94/00509 PCT/US93/0624 2 properties is located. In the majority of cases, the molecular types chosen for testing have belonged to rather narrowly defined chemical classes. For example, the discovery of new peptide hormones has involved work with peptides; the discovery of new therapeutic steroids has involved work with the steroid nucleus; the discovery of new surfaces to be used in the construction of computer chips or sensors has involved work with inorganic materials, etc. As a result, the discovery of new functional molecules, being ad hoc in nature and relying predominantly on serendipity, has been an extremely time-consuming, laborious, unpredictable, and costly enterprise.

A brief account of the strategies and tactics used in the discovery of new molecules is described below. The emphasis is on biologically interesting molecules; however, the technical problems encountered in the discovery of biologically active molecules as outlined here are also illustrative of the problems encountered in the discovery of molecules which can serve as new materials for high technological applications.

Furthermore, as discussed below, these problems are also illustrative of the problems encountered in the development of fabricated materials for high technological applications.

2.1 Drug Design Modern theories of biological activity state that biological activities, and therefore physiclogical states, are the result of molecular recognition events.

For example, nucleotides can form complementary base pairs so that complementary single-stranded molecules hybridize resulting in double- or triple-helical structures that appear to be involved in regulation of gene expression. In another example, a biologically active molecule, referred to as a ligand, binds with 'WO 94/00509 PCT/US93/06240 3 another molecule, usually a macromolecule referred to as ligand-acceptor a receptor or an enzyme), and this binding elicits a chain of molecular events which ultimately gives rise to a physiological state, e.g.

normal cell growth and differentiation, abnormal cell growth leading to carcinogenesis, blood-pressure regulation, nerve-impulse generation and propagation, etc. The binding between ligand and ligand-acceptor is geometrically characteristic and extraordinarily specific, involving appropriate three-dimensional structural arrangements and chemical interactions.

2.1.1 Design and Synthesis of Nucleotides Recent interest in gene therapy and the manipulation of gene expression has focused on the design 15 of synthetic oligonucleotides that can be used to block or suppress gene expression via an antisense, ribozyme or triple helix mechanism. To this end, the sequence of the native target DNA or RNA molecule is characterized and standard methods are used to synthesize oligonucleotides representing the complement of the desired target sequence (see, S. Crooke, The FASEB Journal, Vol. 7, Apr.

1993, p. 533 and references cited therein). Attempts to design more stable forms of such oligonucleotides for use in vivo have typically involved the addition of various functional groups, halogens, azido, nitro, methyl, keto, etc. to various positions of the ribose or deoxyribose subunits cf., The Organic Chemistry of Nucleic Acids, Y. Mizuno, Elsevier Science Publishers BV, Amsterdam, The Netherlands, 1987.

2.1.2 GLYCOPEPTIDES As a result of recent advances in biological carbohydrate chemistry, carbohydrates are being increasingly viewed as the components of living systems with the enormously complex structures required for the WO 94/00509 WO 94/00509 PCT/US93/06240 4encoding of the massive amounts of information needed to orchestrate the processes of life, cellular recognition, immunity, embryonic development, carcinogenesis and cell-death. Thus, whereas two naturally occurring amino acids can be used by nature to convey 2 fundamental molecular messages, via formation of the two possible dipeptide structures, and four different nucleotides convey 24 molecular messages, two different monosaccharide subunits can give rise to 11 unique disaccharides, and four dissimilar monosaccharides can give rise to up to 35,560 unique tetramers each capable of functioning as a fundamental molecular message in a given physiological system.

The gangliosides are examples of the versatility and effect with which organisms can use saccharide structures. These molecules are glycolipids (sugar-lipid composites) and as such are able to position themselves at strategic locations on the cell wall: their lipid component enables them to anchor in the hydropholic interior of the cell wall, positioning their hydrophilic component in the aqueous extracellular millieu. Thus the gangliosides (like many other saccharides) have been chosen to act as cellular sentries: they are involved in both the inactivation of bacterial toxins and in contact inhibition, the latter being the complex and poorly understood process by which normal cells inhibit the growth of adjacent cells, a property lost in most tumor cells. The structure of ganglioside GM, a potent inhibitor of the toxin secreted by the cholera organism, featuring a branched complex pentameric structure is shown below.

PI IPRTITI ITF P-IFFT

HOCH

2

HOCH

2 H OH GANG LIOSIDE GM, WO 94/00509 PCT/US93/06240 The oligosaccharide components of the glycoproteins (sugar-protein composites) responsible for the human blood-group antigens (the A, B, and 0 blood classes) are shown below.

.protein

HOCH

2 Blood group a: Y=NHA, Blood group b: Y=OH BLOOD GROUP A AND B ANTIGENS

HOCH,

HNAc 3s BLOOD GROUP O ANTIGEN, TYPE II h( t~~olt-c) CTr r WO 94/00509 PCT/US93/06240 Interactions involving complementary proteins and glycoproteins on red blood cells belonging to incompatible blood classes cause formation of aggregates, or clusters and are the cause for failed transfusions of human blood.

Numerous other biological processes and macromolecules are controlled by glycosylation the covalent linking with sugars). Thus, glycosylation of erythropoetin causes loss of the hormone's biological activity; deglycosylation of human gonadotropic hormone increases receptor binding but results in almost complete loss of biological activity (see Rademacher et al., Ann.

Rev. Biochem 57, 785 (1988); and glycosylation of three sites in tissue plasminogen activating factor (TPA) produces a glycopolypeptide which is 30% more active than the polypeptide that has been glycosylated at two of the sites.

2.1.3 Design and Synthesis of Mimetics of Biological Liqands c tOTITI ITF -HFFT WO 94/00509 PCT/US93/0624b 6 A currently favored strategy for development of agents which can be used to treat diseases involves the discovery of forms of ligands of biological receptors, enzymes, or related macromolecules, which mimic such ligands and either boost, agonize, or suppress, antagonize, the activity of the ligand. The discovery of such desirable ligand forms has traditionally been carried out either by random screening of molecules (produced through chemical synthesis or isolated from natural sources), or by using a so--called "rational" approach involving identification of a leadstructure, usually the structure of the native ligand, and optimization of its properties through numerous cycles of structural redesign and biological testing.

Since most useful drugs have been discovered not through 1 5 the "rational" approach but through the screening of randomly chosen compounds, a hybrid approach to drug discovery has recently emerged which is based on the use of combinatorial chemistry to construct huge libraries of randomly-built chemical structures which are screened for specific biological activities. Brenner and R.A.

Lerner, 1992, Proc. Natl. Acad. Sci. USA 89:5381) Most lead-structures which have been used in "rational" drug design are native polypeptide ligands of receptors or enzymes. The majority of polypeptide ligands, especially the small ones, are relatively unstable in physiological fluids due to the tendency of the peptide bond to undergo facile hydrolysis in acidic media or in the presence of peptidases. Thus, such ligands are decisively inferior in a pharmacokinetic sense to nonpeptidic compounds, and are not favored as drugs. An additional limitation of small peptides as drugs is their low affinity for ligand acceptors. This phenomenon is in sharp contrast to the affinity demonstrated by large, folded polypeptides, e.g.

proteins, for specific acceptors, e.g. receptors or 'WO 94/00509 PCT/US2/06240 7 enzymes, which is in the subnanomolar range. For peptides to become effective drugs, they must be transformed into nonpeptidic organic structures, i.e., peptide mimetics, which bind tightly, preferably in the nanomolar range, and can withstand the chemical and biochemical rigors of coexistence with biological fluids.

Despite numerous incremental advances in the art of peptidomimetic design, no general solution to the problem of converting a polypeptide-ligand structure to a peptidomimetic has been defined. At present, "rational" peptidomimetic design is done on an ad hoc basis. Using numerous redesign-synthesis-screening cycles, peptidic ligands belonging to a certain biochemical class have been converted by groups of organic chemists and pharmacologists to specific peptidomimetics; however, in the majority of cases the results in one biochemical area, e.g. peptidase inhibitor design using the enzyme substrate as a lead, cannot be transferred for use in another area, e.g. tyrosine-kinase inhibitor design using the kinase substrate as a lead.

In many cases, the peptidomimetics that result from a peptide structural lead using the "rational" approach comprise unnatural a-amino acids. Many of these mimetics exhibit several of the troublesome features of native peptides (which also comprise a -amino acids) and are, thus, not favored for use as drugs. Recently, fundamental research on the use of nonpeptidic scaffolds, such as steroidal or sugar structures, to anchor specific receptor-binding groups in fixed geometric relationships have been described (see for example Hirschmann, R. et al., 1992 J. Am. Chem. Soc., 114:9699-9701; Hirschmann, R. et al., 1992 J. Am. Chem. Soc., 114:9217-9218); however, the success of this approach remains to be seen.

In an attempt to accelerate the identification of lead-structures, and also the identification of useful drug candidates through screening of randomly chosen WO 94/00509 PCT/US93/06240 8 compounds, researchers have developed automated methods for the generation of large combinatorial libraries of peptides and certain types of peptide mimetics, called "peptoids", which are screened for a desirable biological activity. For example, the method of H. M. Geysen, (1984 Proc. Natl. Acad. Sci. USA 81:3998) employs a modification of Merrifield peptide synthesis wherein the C-terminal amino acid residues of the peptides to be synthesized are linked to solid-support particles shaped as polyethylene pins; -nese pins are treated individually or collectively in sequence to introduce additional amino-acid residues forming the desired peptides. The peptides are then screened for activity without removing them from the pins. Houghton, (1985, Proc. Natl. Acad.

Sci. USA 82:5131; and U.S. Patent No. 4,631,211) utilizes individual polyethylene bags ("tea bags") containing C-terminal amino acids bound to a solid support. These are mixed and coupled T'ith the requisite amino acids using solid phase synthesis techniques. The peptides produced are then recovered and tested individually.

Fodor et al., (1991, Science 251:767) described lightdirected, spatially addressable parallel-peptide synthesis on a silicon wafer to generate large arrays of addressable peptides that can be directly tested for binding to biological targets. These workers have also developed recombinant DNA/genetic engineering methods for expressing huge peptide libraries on the surface of phages (Cwirla et al., 1990, Proc. Natl. Acad. Sci. USA 87:6378).

In another combinatorial approach, V. D.

Huebner and D.V. Santi Patent No. 5,182,366) utilized functionalized polystyrene beads divided into portions each of which was acylated with a desired amino acid; the bead portions were mixed together and then split into portions each of which was subjected to acylation with a second desirable amino acid producing

I

WO94/00509 PCr/US93/06240 9 dipeptids, using the techniques of solid phase peptide synthesis. By using this synthetic scheme, exponentially increasing numbers of peptides were produced in uniform amounts which were then separately screened for a biological activity of interest.

Zuckerman et al., (1992, Int. J. Peptide Protein Res. 91:1) also have developed similar methods for the synthesis of peptide libraries and applied these methods to the automation of a modular synthetic chemistry for the production of libraries of N-alkyl glycine peptide derivatives, called "peptoids", which are screened for activity against a variety of biochemical targets. (See also, Symon et al., 1992, Proc. Natl.

Acad. Sci. USA 89:9367). Encoded combinatorial chemical syntheses have been described recently Brenner and R.A. Lerner, 1992, Proc. Natl. Acad. Sci. USA 89:5381).

In addition to the lead structure, a very useful source of information for the realization of the preferred "rational" drug discovery is the structure of the biological ligand acceptor which, often in conjunction with molecular modelling calculations, is used to simulate modes of binding of the ligand with its acceptor; information on the mode of binding is useful in optimizing the binding properties of the lead-structure.

However, finding the structure of the ligand acceptor, or preferably the structure of a complex of the acceptor with a high affinity ligand, requires the isolation of th~ acceptor or complex in the pure, crystalline state, followed by x-ray crystallographic analysis. The isolation and purification of biological receptors, enzymes, and the polypeptide substrates thereof are timeconsuming, laborious, and expensive; success in this important area of biological chemistry depends on the effective utilization of sophisticated separation technologies.

-1 WOg 94/00509 PCT/US93/06240 0o Crystallization can be valuable as a separation technique but in the majority of cases, especially in cases involving isolation of a biomolecule from a complex biological milieu, successful separation is chromatographic. Chromatographic separations are the result of reversible differential binding of the components of a mixture as the mixture moves on an active natural, synthetic, or semisynthetic surface; tightbinding components in the moving mixture leave the surface last en masse resulting in separation.

The development of substrates or supports to be used in separations has involved either the polymerization crosslinking of monomeric molecules under various conditions to produce fabricated materials such as beads, gels, or films, or the chemical modification of various commercially available fabricated materials, sulfonation of polystyrene beads, to produce the desired new materials. Prior art support materials have been developed to perform specific separations or types of separations and are of limited utility. Many of these materials are incompatible with biological macromolecules, e.g. reverse-phase silica frequently used to perform high pressure liquid chromatography can denature hydrophobic proteins and other polypeptides.

Furthermore, many supports are used under conditions which are not compatible with sensitive biomlecules, such as proteins, enzymes, glycoproteins, etc., which are readily denaturable and sensitive to extreme pH's. An additional difficulty with separations carried out using these supports is that the separation results are often support-batch dependent, they are irreproducible.

Recently a variety of coatings and compositeforming materials have been used to modify commercially available fabricated materials into articles with improved properties; however the success of this approach remains to be seen.

I

WO 94/00509 PCT/US93/06240 11 If a chromatographic surface is equipped with molecules which bind specifically with a component of a complex mixture, that component will be separated from the mixture and may subsequently be released by changing the experimental conditions, buffers, stringency, etc.) This type of separation is appropriately called affinity chromatography and remains an extremely effective and widely used separation technique. It is certainly much more selective than traditional chromatographic techniques, e.g chromatography on silica, alumina, silica or alumina coated with long-chain hydrocarbons, polysaccharide and other types of beads or gels, etc., which in order to attain their maximum separating efficiency need to be used under conditions that are damaging to biomolecules, e.g. conditions involving high pressure, use of organic solvents and other denaturing agents, etc.

The development of more powerful separation technologies depends significantly on breakthroughs in the field of materials science, specifically in the design and construction of materials that have the power to recognize specific molecular shapes under experimental conditions resembling those found in physiological media, i.e. these experimental conditions must involve an aqueous medium whose temperature and pH are close to the physiological levels and which contains none of the agents known to damage or denature biomolecules. The construction of these "intelligent" materials frequently involves the introduction of small molecules capable of specifically recognizing others into existing materials, e.g. surfaces, films, gels, beads, etc., by a wide variety of chemical modifications. Alternatively, molecules capable of recognition are converted to monomers and used to create the "intelligent" materials through polymerization reactions.

WO 94/00509 PCT/US93/06240 12 2.2 Oxazolones Oxazolones, or azlactones, are structures of the general formula: R

(CH

0 where A is a functional group and n is 0 or 1 and typically 1-3. Oxazolones containing a five-membered ring and a single substituent at position 4 are typically encountered as transient intermediates which cause problematic racemization during the chemical synthesis of peptides. An oxazolone can in principle contain one or two substituents at the 4-position. When these substituents are not equivalent, the carbon atom at the 4-position is asymmetric and two non-superimposable oxazolone structures (azlactones) result: AO O

IO

N N

R

R2R2 R R Ri Chiral oxazolones possessing a single 4substituent (also known as 5(4H)-oxazolones), derived from (chiral) natural amino acid derivatives, including activated acylamino acyl structures, have been prepared and isolated in the pure, crystalline state (Bodansky, Klausner, Ondetti, M.A. in "Peptide Synthesis", Second Edition, John Wiley Sons, New York, 1976, p. 14 and references cited therein). The facile, basecatalyzed racemization of several of these oxazolones has been studied in connection with investigations of the serious racemization problem confronting peptide synthesis (see Kemp, D.S. in "The Peptides, Analysis, WO 94/00509 PCT/US93/06240 13 Synthesis, and Biology", Vol. 1, Gross, E. Meienhofer, J. editors, 1979, p. 315).

Racemization during peptide synthesis becomes very extensive when the desired peptide is produced by aminolysis of activated peptidyl carboxyl, as in the case of peptide chain extension from the amino te.minus, e.g.

I VI shown below (see Atherton, Sheppard, R.C.

"Solid Phase Peptide Synthesis, A Practical Approach", IRL Press at Oxford University Press, 1989, pages 11 and 12). An extensively studied mechanism describing this racermization involves conversion of the activated acyl derivative (II) to an oxazolone (III) followed by facile base-catalyzed racemization of the oxazolone via a resonance-stabilized intermediate (IV) and aminolysis of the racemic oxazolone producing racemic peptide 1 5 products (VI).

RI H 0 0-N=C=N- 2H IN OH (DCC) SH. I II C H R 2 H "activation"

I

SH R' H/ I R I 11 2 N N OC H 0 H O R H H R 1 Base N N R 2 Proton Donor H WO 94/00509 PCT/US93/06240 14 H

R'

I N R- N 2 R aminolysis NI H R 3

HR

3 H O- H ON

C

C

2 H R 1 H O H R3 N -Y N C02-| H 0 R2 H VI Extensive research on the trapping of oxazolones III (or of their activated acyl precursors II) to give acylating agents which undergo little or no racemization upon aminolysis has been carried out, and successes in this area (such as the use of Nhydroxybenzotriazole) have greatly advanced the art of peptide synthesis (Kemp, D.S. in "The Peptides, Analysis, Synthesis, and Biology", Vol. 1, Gross, E. Meienhofer, J. editors, 1979, p. 315).

Thus, attempts to deal with the racemization problem in peptide synthesis have involved suppressing or avoiding the formation of oxazolone intermediates altogether.

Furthermore, certain vinyl oxazolones having a hydrogen substituent at the 4-position can also undergo thermal rearrangements (23 Tetrahedron 3363 (1967)), which may interfere with other desired transformations, such as Michael-type additions.

0 A 0 N H

H

.WO 94/00509 PCT/US93/06240 15 3. SUMMARY OF THE INVENTION A new approach to the construction of novel molecules is described. This approach involves the development of oxazolone (azlactone) derivative molecular building blocks, containing appropriate atoms and functional groups which may be chiral and which are used in a modular assembly of molecules with tailored properties; each module contributing to the overall properties of the assembled molecule. The oxazolone derivative building blocks of the invention can be used to synthesize novel molecules designed to mimic the three-dimensional structure and function of native ligands, and/or interact with the binding sites of a native receptor. This logical approach to molecular construction is applicable to the synthesis of all types of molecules, including but not limited to mimetics of peptides, proteins, oligonucleotides, carbohydrates, lipids, polymers and to fabricated materials useful in materials science. It is analogous to the modular construction of a mechanical device that performs a specific operation wherein each module performs a specific task contributing to the overall operation of the device.

The invention is based, in part, on the following insights of the discoverer. All ligands share a single universal architectural feature: they consist of a scaffold structure, made e.g. of amide, carbon-carbon, or phosphodiester bonds which support several functional groups in a precise and relatively rigid geometric arrangement. Binding modes between ligands and receptors share a single universal feature as well: they all involve attractive interactions between complementary structural elements, charge- and vtype interactions, hydrophobic and van der Waals forces, hydrogen bonds. A continuum of fabricated materials exists spanning a dimensional range from about 100 A to WO 94/00509 PCr/US93G,, 16 1 cm in diameter comprising various materials of construction, geometries, morphologies, and functions, all possessing the common feature of a functional surface which is presented to a biologically active molecule or a mixture of molecules to achieve recognition between the molecule (or the desired molecule in a mixture) and the surface. And Oxazolone derivative structures, heretofore regarded as unwanted intermediates which form during the synthesis of peptides, would be ideal building blocks for constructing backbones or scaffolds bearing the appropriate functional groups that either mimic desired ligands, and/or interact with appropriate receptor binding sites, and for carrying out the synthesis of the various parts of the functionalized scaffold orthogonally, provider that racemization of the oxazolone structures is prevented or controlled. Thus, the invention is also based, in part, on the further recognition that such derivatives of ozaxolones, which do not racemize, can be used as universal building blocks for the synthesis of such novel molecules. Furthermore, oxazolone derivatives may be utilized in a variety of ways across the continuum of fabricated materials described above to produce new materials capable of specific molecular recognition. These oxazolone derivatives may be chirally pure and used to synthesize molecules that mimic a number of biologically active molecules, including but not limited to peptides, proteins, oligonucleotides, polynucleotides, carbohydrates and lipids, and a variety of other polymers as well as fabricated materials that are useful as new materials, including but not limited to solid supports useful in column chromatography, catalysts, solid phase immunoassays, drug delivery vehicles, films, and "intelligent" materials designed for use in selective separations of various components of complex mixtures.

WO 94/00509 PCVUS93/06240 17 Working examples describing the use of oxazolone-derived modules in the modular assembly of a variety of molecular structures are given. The molecular structures include functionalized silica surfaces useful in the optical resolution of racemic mixtures; peptide mimetics which inhibit human elastase, protein-kinase, and the HIV protease; and polymers formed via freeradical or condensation polymerization of oxazolonecontaining monomers.

In accordance with the present invention, the oxazolone-derived molecules of interest possess the desired stereochemistry and, when required, are obtained enantiomerically pure. In addition to the synthesis of single molecular entities, the synthesis of libraries of oxazolone-derived molecules, using the techniques 15 described herein or modifications thereof which are well known in the art to perform combinatorial chemistry, is also within the scope of the invention. Furthermore, the oxazolone-derived molecules possess enhanced hydrolytic and enzymatic stabilities, and in the case of biologically active materials, are transported to target ligand-acceptor macromolecules in vivo, without causing any serious side-effects.

According to the present invention, chiral oxazolones, in which the asymmetric center is a 4-disubstituted carbon, as well as synthetic nonchiral oxazolones may be synthesized readily and used as molecular modules capable of controlled reaction with a variety of other molecules to produce designed chiral recognition agents and conjugates. These chiral oxazolones may also be linked together, using polymerizing reactions carried out either in a stepwise or chain manner, to produce polymeric biological ligand mimics of defined sequence and stereochemistry.

Furthermore, according to the present invention, WO 94/00509 PCT/US93/06240 18 4-disubstituted chiral oxazolones are extremely useful in the asymmetric functionalization of various solid supports and biological macromolecules and in the production of various chiral polymers with useful properties. The products of all of these reactions are srprisingly stable in diverse chemical and enzymological environments, and uniquely suitable for a variety of superior pharmaceutical and high-technological applications.

For applications in which the 4 position of the oxazolone precursor does not need to be chiral, the construction of certain polymeric materials, the use of oxazolones in the construction of linkers for the joining of two or more pharmaceutically useful or, simply, biologically active ligands, etc., syimetric or nonchiral oxazolones are used in chemical syntheses. Furthermore, if the oxazolone-derived product does not need to incorporate the 4-position of the oxazolone precursor in the enantiomerically pure state, oxazolone precursors which are not enantiomerically pure may be used for syntheses.

4. DETAILED DESCRIPTION OF THE INVENTION To the extent necessary to further under any portion of the detailed description, the fo;l wing earlier filed U.S. patent applications are pressly incorporated herein by reference the e o: DISUBSTITUTED OXAZOLONE COMPOSITIONS AND DER TIVES THEREOF (Serial No. 07/906,756 filed Jun 0, 1992); and DIRECTED CHIRAL LIGANDS, RECOGNITI AGENTS AND FUNCTIONALLY USEFUL MATERIALS FM SUBSTITUTED OXAZOLONES AND DERIVATIVES CONTA G AN ASYMMETRIC CENTER (Serial No. 08/041,562 4.1 Synthesis of Chiral Substituted Oxazolones

I

WO 94/00509 PCT/US93/06240 19 Chiral 4,4'-disubstituted oxazolones may be prepared from the appropriate N-acyl ami°-o acid using any of a number of standard acylation and cyclization techniques well-known to those skilled in the art, e.g.: ACOCI R1 R 2

H

2 N CO 2

H

Ac 2

O

If the substituent at the 2-position is capable of undergoing addition reactions, these may be carried out with retention of the chirality at the 4-position to produce new oxazolones. This is shown for the Michael addition to an alkenyl oxazolone as follows: 0 A'XH N* N R R2 R' where X S or NR and A' is a functionalized alkyl group.

The required chiral amino acid precursors for oxazolone synthesis may be produced using stereoselective reactions that employ chiral auxiliaries. An example of such a chiral auxiliary is (5)-(-)-l-dimethoxymethyl-2- WO 94/00509 WO 9400509PC1'/US93/06240 20 xnethoxymethylpyrrolidine (SMPD) (Liebig's Ann. Chem. 1668 (1983)) as shown ',aow, H k 2 7jH2HH 1

CH

3

I

tNaH

HCOOH

R 3

X/LDA

-78 0

C

NH

2 HOOC

"/R

hydrolysis

CH

3 00C.

wherein RI CH 3 1 i-Bu, or benzyl; and R 3

=CH

3

CHF

2

C

2 n-Bu, or benzyl. A second example involves oxazolo[3,2-cj [1,3]benzoxazine-2(3H) ,5-diones (55 J. Org.

Chem. 5437 (1990)), 'WO 94/00509 WO90009PC7/US93/0-I .21

R

H

H3W CC 2 WC1 2 CHC1 3

R.

LIOR R'X base wherein R' phenyl or i-Pr; and R- CH 3 1 C 2 or

CH

2

=CH-CH

2 Alternatively, the desired chiral amino acid may be obtained using stereoselective iochem"Ial transformai:ions carried out on the racemate, synthesized via standard reactions, as shown below for a case involving a commercially-available organism (53 41.Qrq.

Chem. 1826 (1988)), mycobacteriumn neoaurum ATCC25795 L-Acid D-Arnide wherein R' i-Pr, i-Bu, phenyl, benzyl, p-methoxybenzyl, or pienethyl; and R =CH 3 or CAH.

Racemic mixtures of 4,4'-disubstituted may be prepared from monosubstituted WO 94/00509 PCT/US93/06240 22 oxazolones by alkylation of the 4-position, as in the following transformation (Synthesis Commun., Sept. 1984, at 763; 23 Tetrahedron Lett. 4259 (1982)): Ph Ph -H Br -Ph Resolution of racemic mixtures of oxalolones may be effected using chromatography or chiral supports under suitable conditions which are well known in the art; using fractional crystallization of stable salts of oxazolones with chiral acids; or simply by hydrolyzizing the racemic oxazolone to the amino Jid derivative and resolving the racemic modification using standard analytical techniques.

A wide variety of 4-monosubstituted azlactones may be readily prepared by reduction of the corresponding unsatvi'ted derivatives obtained in high yield from the condensation reaction of aldehydes, ketones, or imines with the oxazolone formed from an N-acyl glycine (49 J.

Org. Chem. 2502 (1984); 418 Synthesis Communications (1984))

H

0 CHO O

I

WO 94/00509 PCT/US93/06240 23 Hydropnudoo Thus, the art provides a wealth of chemical and biochemical methods which can be used to produce a wide variety of enantiomeric, multifunctionalized oxazolones whose substituents may be tailored to mimic any desirable form of the side chains of native polypeptides.

4.2 Synthetic Transformations of Chiral Oxazolones 4.2.1 Reactions with One or Two Nucleophiles Producing Coniugates Chiral oxazolones may be subjected to ringopening reactions with a variety of nucleophiles producing chiral molecules as shown below: 0 O i R2 A BYH S1 SN A N R2 H R'

O

In the structure above, Y represents an oxygen, sulfur, or nitrogen atom. R' and R 2 differ from one another and taken alone each signifies one of the followng: alkyl including cycloalkyl and substituted forms thereof; aryl, aralkyl, alkaryl, and substituted or heterocyclic versions thereof; preferred forms of R' and R 2 are structures mimicking the side chains of naturallyoccurring amino acids as well as various ring structures.

The above ring-opening reaction can be carried out either in an organic solvent such as methylene chloride, ethyl acetate, dimethyl formamide (DMF) or in water at room or higher temperatures, in the presence or 24 absence of acift, such as oarboxylic, other proton or Lewizacidot or basest such as tertiary amines or hydroxides, serving as catalysts. if structure BYE contains nucleophilic functional groups which may interfere with the ring-opening acylation, theae groups must be temporarily protected using suitable orthogonal protection strategies based on the rany protecting groups known in the art; cf., Protective ~r-oups i-n-Oreianic, Synthpsisl, 2ed., T,W. Greene and P.G.M.

Wutts, John Wiley a Sons, New York, 1991.

The substituents A and B shown may be of a variety of strnctures and may differ markedly in their physical or functional properties, or may be the same; they may also be chiral or symmetric. A and B are preferably selected from: 1) Amino acid derivatives of the form (AA), wherein mu is an integei greater than or equal to one, which would include, for example, natural and synthetic amino acid residues including all of the naturally occurring alpha amino acids, especially alanine, arginine, asparagnine, aspartic acid, cysteine, glutamine, qJlutamic acid, glycins, 2histidine, isoleucine, leucine, lysine, methionine, 00 phenylalanine, praline, serine, threonine, tryptophan, so#* tyrosine; the naturally occurring disubstitUted amino acids, too: such as amino izobutyric acid, and isovaline, etc.; a variety 0 of synthetic amino acid residues, including alpha- 25 disubstitued variantz, species with olefinic substitution at the alpha position, species having derivatives, variants or mimetics of the naturally occurring side chains; N-substituted glycine zesidues; natural and synthetic species 0: go 6 known to functionally mimic amino acid residues, such as 30statine, bestatin, etc.; peptides (n-2-30) constructed from the amino acids listed above, such as angiotensinogen and its family of physiologically important angiotensin hydrolysis products, as well as derivatives, variants and mimetics made from various combinations and permutations of all the natural 3S and synthetic residues listed above; polypeptides (X-31-A70), such as big endothel.in, pancreastatin, hnuman growth hormone releasing factor and human pancreatic polypeptide; proteins 24A includinV structural proteins such as collagen, functional proteins such as henoglobin, regulatory proteins such as the dopamine arnd thrombin receptors.

2) Nucleotide derivatives of the form (NUCL) 1 wherein 1 is an integer greater than or equal to one, which includes natural and synthetic nuclootides such as adenosine, thymine, guanidine, uridine, cytosine, derivatives of these and a variety of variants an~d mimetics of the purine ring, the sugar ring, the phosphate linkage and combinations ojf some or all of these; nucleotide probes (1=2-25) and oligonucleotides (1>25) including all of the various possible homo and heterosynthetic purine or pyrimidine species or mimics of these, various sugar ring mizetics, and a wide variety of alternate backbone analogues including but not limited to phosphodieste,., phosphorothionate, phosphorodithionate, phof~phoramidate, alk~yl phosphotriester, sulfarate, 31-thioform.s.tal, methylene (maethylimino), 3-Ncarbamate, morpholino carbamate and peptide nucleic acid analogues.

20 3) Carbohydrate derivatives of the form (CH)n.

This would include natural physiologically active carbohydrates such as including related compounds such as glucose, galactose, sialic acids, beta-D-glucosylamine and n 4orinycin which are both inhibitors of glucosidase, pseudo 2sugars, such as Ba-carba'-2-D-galactopyranose, which is known to inhibit the growth of Xlebsiella pneumonia I synthetic carbohydrate residues and derivatives of these and all of the complex oligomeric permutations of these as found in nature, including high mannose oligosaccharides, 3the known antibiotic streptomycin a4) A natur-ally occurring or synthetic organic structural muotif. This term is defined as meaning an organic molecule having a specific structure that has biological activity, such as having a complementary structure to an enzyine, for instance. This term includes any of the well known base structures of pharmaceutical conpounds including pharmacophores or metabolites thereof. '2hese include 24B betalactams, such as penicillin, know to inhibit bacterial cell wall biosynthesis; dibenzazepines, known to bind to CNS receptors, used as antidepressants; polyketide macrolides, known to bind to bacterial ribosymes, etc. These structural motifs are generally known to have specific desirable binding properties to ligan acceptors.

A reporter element such as a natural or synthetic dye or a residue capable of photographic amplification which possesses reactive groups which may be synthetically incorporated into the oxazolone structure or reaction scheme and may be attached through the groups without adversely interfering with the reporting functionality of the group. Preferred reactive groups are amino, thio, hydroxy, carboxylic acid, carboxylic acid ester, IS particularly methyl ester, acid chloride, isocyanate alkyl halides, aryl halides and oxirane groups.

6) An organic moiety containing a poiymerizable group such as a double bond or other functionalities capable of undergoing condensation polymerization or 20 copolymerization. suitable groups include vinyl groups, oxirane groups, carboxylic acids, acid chlorides, esters, amides, lactones and lactams. Other organic moiety such as those defined for R and R' may also be used.

7) A macromolecular component, such as a .9 o 25 macromolecular surface or structures which may be attached to the oxazolone modules via the various reactive groups *o outlined above in a manner ,where the binding of the attached species to a ligand-receptor molecule is not adversely 9 affected and the interactive activity of the attached 30 functionality is determined or limited by the macromolecule.

This includes porous and non-porous inorganic macromolecular components, such as, for example, silica, alumina, zirconia, titania and the like, as commonly used for various applications, such as normal and reverse phase chromatographic separations, water purification, pigments for paints, etc.; porous and non-porous organic macromolecular components, including synthetic components such as styrene- -z 24C divinyl benzene beads, various methacrylate beads, PVA beads, and the like, commonly used for protein purification, water softening and a variety of other applications, natural components such as native and functionalized celluloses, such as, for example, agarose and chitin, sheet and hollow fiber membranes made from nylon, poluyether sulfone or any of the materials mentioned above. The molecular weight of these macromolecules may range from about 1000 Daltons to as high as possible. They may take the form of nanoparticles (dp-100-1000 Angstroms), leAex particles (dp=1000-5000 Angs;roms), porous or non-porous beads (dp=o.5-1000 microns), membranes, gels, macroscopic surfaces or functionalized or coated versions or composites of these.

A and/or B may be a chemical bond to a suitable organic moiety, a hydrogen atom, an organic moiety which contains a suitable electrophilic group, such as an aldehyde, ester, alkyl halide, ketone, nitrile, epoxide or the like, a suitable nucleophilic group, such as a hydroxyl, amino, carboxylate, amide, carbanion, urea or the like, or one of the R groups defined below. In addition, A and B may join to form a ring or structure which connects to the ends of the repeating unit of the compound defined by tha preceding formula or may be separately connected to other moieties.

A generalized structure of the compound of this invention is defined by the following formula: 30 wherein: a. At least one of A and B are as defined above 35 and A and B are optionally connected to each other or to *other compounds; V4 25 b. X and Y are the same or different and each represents a chemical bond or one or more atoms of carbon, nitrogen, sulfur, oxygen combinations thereoff; 0. R and R' are the same or different and each represents B, cyano, -nitro, halogen, oxygen, hydroxy, alkoxy, thio, straight or branched chain alkyl, carbocyclic aryl and substituted or heterocyclic drzrivatives thereof, wherein R and nay be different in adjacent n units and have a selected stereochemical arrangement about the carbon atI-.om to which they are attachedi d. G is a chemical bond or a connecting group and G may be different in adjacent n units; e. n is an integer equal to or greater than one; and f. n refers to an integral superscript for R and R' wherein is an integer from 1 to n when n= 1, 2, 31 n then R =Rt, R 2 R R.R and R' As used herein, the phrase linear chain straight chain) or branched chained al~kyl groups means any substituted or unsubstituted acyclic carbon-containing compounds, including alkanes, al}kenes and alkynes. Alkyl groups having up to 30 carbon atoms are preferred. Examples of alkyl groups include lower alkyl, for example, methyl, ethyl, n-propyl, iso-propyl, n-bu2tyl, iso-btityl or tertbutyl; upper alkyl, for example, cotyl, nonyl, decyl, and the like; lower alkylene, for example, ethylene, propylene, or opyldiene, butyloene, butyldiene; upper alkenyl such as 1decene, 1-nonene, 2 ,6-dimethyl-5-octenyl, 30 or heptenyl, and the like; alkynyl such as 1-ethynyl, 2butynyl, 1-pentynyl and the like. The ordinary skilled artisan is familiar with numerous linear and branched alkyl groups, which are within the scope of the present invention.

In~ addition, such alkyl group may also contain various substituents in which one or more hydrogen atoms has been xeplaced by a functional group. Functional groups include but are not limited to hydroxyl, amino, carboxyl, 26 amide, ester, ether, and halogen (fluorine, chlorine, bromine and iodine), to 4ention but a few. Specific substituted alkyl 5roups can be, for example, alkoxy such as Taethoxy, ethoxy, butoxy, pentoxy and the like, pojlyhydroxy such as s 1,2-dihydroxynpropyl, 1,4-dihydroXy'-l-butyl, and the like; riethylamino, ethylamino, dimethylamino, diethy2.amino, triethylamino, cyclopentylamino, benzylamino, dibenzyla-mino, and the like; propaoic, butanoic or pentanoic acid groups, and the like; formamido, acetamido, butanamido, and the like, methoxycarbonyl, ethoxycarbonyl or the like, chloroformyl, bromoformyl, 1,1-chioroethyl, bromoethyl, and the like, or dimethyl or diethyl ether groups or the like.- As used herein, substituted and-unsub.,tituted carbocyclic groups of up to about 20 carbon atoms means cyclic carbon-containing compounds, including but not limited to cyclopentyl, cyclohexyl, cycloheptyl, admantyl, and the like; such cyclic groups may also contain various substituents in which onte or more hydrogen atoms has been replaced by a functional group. Such functional groups include those described above, and lower alkyl groups as described above. The cyclic groups of the invention may further comprise a heteroatom. For example, in a specific embodiment, R 2 is cycohexanol.

As used herein, substituted and unsubstituted aryl 25 groups means a hydrocarbon ring bearing a system of conjugated double bonds, usually comprising an even number of 6 or more (pi) electrons. Examples of aryl groups includiing, but are not limited to, phenyl, naphthyl, anisyl, toluyl, xylenyl and the like. According to the present invention, aryl also includes aryloxy, aralkyl, aralkyloxy and heteroaryl groups, pyrimidine, morphoJline, piperazine, piperidine, benzoic ac.id, toluene or thiophene and the like.

These aryl groups may also be substituted with any number of a variety of functional groups. in addition to the functional groups described above in connection with substituted alkyl groups and carbocylic groups, functional groups on the aryl groups can be nitro groups.

I

27 As mentioned above, R 2 can also represent any combination of alkyl, carbocyclic or aryl groups, for example, 1-cyclohexylpropyl, benzylcyclohexylmethyl, 2-cyclohexyl-propyl, 2,2-methylcyclohexylpropyl, S 2,2methylphenylpropyl, 2,2-methylphenylbutyl, and the like.

Preferably, if G is a chemical bond, Y includes a terminal carbon atom for attachment to the quarternary nitrogen; and if n is 1 and X and Y are chemical bonds, R and R' are the same, A and B are different and one is other than H or R.

U' -tain circumstances, A and/or B may be a chemical bond c- suitable organic moiety, a hydrogen atom, an organic moiety which contains a suitable electrophilic group, such as an aldehyde, ester, alkyl halide, ketone, nitrile, epoxide or the like, a suitable nucleophilic group, such as a hydroxyl, amino, carboxylate, aminde, carbanion, urea or the like, or one of the R groups defined balow. In addition,'A and B may join to form a ring or structure which connects to the ends of the repeating unit of the compound defined by the preceding formula or may be separately connected to other moeities.

Preferably, if n is 1, and X and Y are chemical bonds, A and B are different and one is other than a chemical bond, H or R; if n is 1 and Y is a chemical bond, G S 25 includes a NH, OH or SH terminal group for connection to the carbonyl group and G-B is other than an amino acid residue or a peptide; if n is 1 and X, Y, and G each is a chemical bond, A and B each is other than a chemical bond, an amino acid residue or a peptide; and if n is 1, either X or A has to include a CO group for direct connection to the NH group.

These compounds may be used to mimic various compounds such as peptides, nucleotides, carbohydrates, pharmaceutical compounds, reporter compounds, polymerizable 35 compounds or substrates.

Another compound is defined by the formula: I uI WO 94/00509 WO 94/00509 PCT/US93/06240 -28-

R

A-X--NH-C---CO-G

Y-B

where A, B, X, Y and G are as defined above.

In one embodiment of the invention, at least one of A and B represents an organic or inorganic macromolecular surface functionalized with hydroxyl, sulfhydryl or amine groups. Examples of preferred macromolecular surfaces include ceramics such as silica and alumina, porous or nonporous beads, polymers such as a latex in the form of beads, membranes, gels, macroscopic surfaces, or coated versions or composites or hybrids thereof. A general structure of a chiral form of these materials is shown below:

R

1 A--CO-NH-C- CO--Y--(Surface)

I

2 In another embodiment of the invention, the roles of A and B in the structure above are reversed, so that B is a substituent selected from the list given above and A represents a functionalized surface as shown for one of the enantiomeric forms:

R

i 1 (Surface)--CO--NH--C--CO--Y-B

R

2 In the description that follows, R" where n an integer will be used to designate a group from the definition of R and R'.

In a preferred embodiment, group A or B in the above structure is an aminimide moiety. This moiety may be introduced, for example by reacting the oxazolone with an asymmetrically substituted hydrazine and alkylating SUISMC Q rc r---r 29the resulting hydrazide, by reaction with an alkcyi halide, or epoxide)~ An example of' such a-surface is shown below.

(Sur,,ra) Ce1-HONHC N NIR 4 3.02 Another embodimen~t of the invention relater. to .3an oxazolone ring having the structure

N-R

where A, RI I' and Y are as described above and q~ is zero or 1. Preferahly, Y is a chemical bond [see claim 212.

This ring is useful for preparing the desired O~razolone derivatives.

A further embodiment of the invention expl.oits 'the capability of oxazolones with suitable substitupnts at the 2-position to act as alkylating agents.

Appropriate substitluents include vinyl groups, which nak the oxazolone a M~ichael. acceptor, haloalky. and alk~yl onate-ester and epoxide groups. For exanple, Michael addition to the double bond of a chiral 2-vinyloxazolone followed by a ri.ng opening reaction results in a chiral *.conjugate structure. This general reaction scheme, illustrated f or the case of a 2-vinyl aziactone derivative, is as follows: 3s.

WO 94/00509 PCT/US93/06240 30

AXH-

R

2 o AX BYH

H

0 wherein X represents a sulfur or nitrogen atom; Y represents a sulfur, oxygen, or nitrogen atom; and substituents A and B, as described above, may adopt a variety of structures, differing markedly in their physical or functional properties or being the same, may be chiral or achiral, and may be preferably selected from amino acids, oligopeptides, polypeptides and proteins, nucleotides, oligonucleotides, ligand mimetics, carbohydrates, aminimides, or structures found in therapeutic agents, metabolites, dyes, photographically active chemicals, or organic molecules having desired steric, charge, hydrogen-bonding or hydrophobicity characteristics, or containing polymerizable vinyl groups.

The Michael reaction described above is usually carried out using stoichiometric amounts of nucleophile AXH and the oxazolone in a suitable solvent, such as toluene, ethyl acetate, dimethyl formamide, an alcohol, and the like. The product of the Michael addition is preferably isolated by evaporating the reaction solvent in vacuo and purifying the material isolated using a technique such as recrystallization or chromatography.

Gravity- or pressure-chromatography, on one of a variety of supports, silica, alumina, under normal- or reversed-phase conditions, in the presence of a suitable solvent system, may be used for purification.

The selectivities of the Michael and oxazolone WO 94/00509 PC/US93/06240 31 ring-opening processes impose certain limitations on the choice of AXH and BYH nucleophiles shown above.

Specifically, nucleophiles of the form ROH tend to add primarily via the ring-opening reaction, and often require acidic catalysts BF 3 thus, X should not be oxygen. Likewise, primary amines tend to add only via ring-opening, and X should therefore not be NH.

Secondary amines readily add to the double bond under appropriate reaction conditions, but many can also cause ring-opening; accordingly, X or Y can be N provided A or B are not hydrogen. Nucleophiles of the form RSH will exclusively add via ring-opening if the sulfhydryl group is ionized if the basicity of the reaction mixture corresponds to pH on the other hand, such nucleophiles will exclusively add via Michael reaction under non-ionizing neutral or acidic) conditions.

During the Michael addition, it is important to limit the presence of hydroxylic species in the reaction mixture moisture) to avoid ring-opening side-reactions.

Summarizing, AXH can be a secondary amine or thiol, and BYH can be a primary or secondar- amine or thiol, or an alcohol.

In one variant of the Michael-ring-opening sequence given above, A is a substituent selected from the foregoing list and BXH comprises an organic or inorganic macromolecular surface, a ceramic, a porous or non-porous bead, a polymer such as a latex in the form of a bead, a membrane, a gel or a composite, or hybrid of these; the macromolecular surface is functionalized with hydroxyl, sulfhydryl or amine groups which serve as the nuclen-hiles in the ring-opening reaction. The reaction sequence is carried out under conditions similar to those given for the nonpolymeric cases; purification of the final product involves techniques used in the art to purify supports and other surfaces after derivatization, such as washing, dialysis, WO 94/00509 PCT/US93/06240 32 etc. The result of this reaction sequence is a structure such as the one shown below: Ri R 2 N Y (Surface)

H

0 In another variant, the roles of AXH and BYH are reversed, so that BYH is the substituent selected from the list above and AXH represents a functionalized surface.

Altetnatively, reactive groups may be introduced at the 2-position of the oxazolone ring via suitable acylations, as shown for the specific example of a benzoyl chloride derivative: O P R'

X-CH

2 I 1 H 2 N CO2H R R'

R

X-CH

2 C C 2 H XC R H 0-0 In the case where X is part of a group whose reactivity is orthogonal tc. that of the oxazolone ring, such as in the case of a benzyl chloride group, ring-opening addition with BYH may be carried out and followed by reaction with an appropriate AXH group, e.g. an amine

ANH

2 to give the product shown: 'WO 94/00509 WO 9400509PCT/US93/06240 33

C]-CH

2 R BYN H CI-CH 2

C-N-C-C-YB

/H

0 0 RO ANH 2

A-N-CH

2

C-N-C-C-YB

HH

If in the aljove sequences the benzylic electrophile competes with the oxazu17,ne ring for the nucleophile BYH, a suitable protecting group, shown as B! below, may be used to block an existing benzylic amino group in the oxazolone; subsequent to the ring-olening addition of BYH the protected group is removed usinig standard techniques if the protecting group is Boc, it is removed by uisinsg dilute TFA in CH- 2 C1 2 and the resulting product is reacted with an appropriate electrophile, A-CH,-Br, thus introducing substituent A into the molecule.

R 0 RO0 N.J BYH 11 T 11 BI-NHcH I' BI-NH-CH 2

-&/C-N-C-C-BY

1Deprotect 0 RO -0 A-CH 2

-N-CH

2 /C-N-C-C-BY -HN-CH 2

/C-?F-C-C-BY

I

WO) 94/00509 PCT/US93/06240 34 4.2.2 Catenation of Chiral Oxazolones Producinq Chiral Polymers By selecting appropriate oxazolone building blocks and catenating (linking) them in one of a variety of ways, it is possible to produce polymeric functionalized scaffolds, of varying length and complexity, each of which mimicks a biologically important ligand and moreover possesses features which are desired of potent drugs, such as stability in physiological media, superior pharmacokinetics, etc. The oxazolones selected for catenation contain functional groups which, when part of the oxazolone-derived scaffold, will make specific contributions to the ligandacceptor binding interaction, as determined by previous structural studies on the binding interaction.

Alternatively, by the judicious insertion of one or more oxazolone-derived units into a sequence of a peptide or protein, that is susceptible to hydrolysis or to enzymatic degradation, a hybrid molecule may be produced which has improved stability properties. These structures may be represented through the general conjugate structure given above; A and B represent the polypeptide sequences flanking the inserted oxazolonederived unit or units.

WO 94/00509 PCT/US93/06240 35 The polymeric, oxazolone-derived ligand sequences may be constructed in one of three ways as outlined below.

4.2.2.1 Polymerization Via Sequences of Nucleophilic Oxazolone-Ring-Open±ng Followed by Oxazolone-Forminc Cyclization According to this approach, the oxazolone ring is opened via nucleophilic attack by the amino group of a chiral a,a'-disubstituted amino acid; the resulting amide may be recyclized to the oxazolone, with retention of chirality, and subjected to a further nucleophilic ringopening reaction, producing a growing chiral polymer as shown below:

__I

WO 94/00509 WO 9400509Pcr/US93/06246 36 A Y\ 0

N

R

3

R

t' 2 N COym I A,

H

2 N COyM N Coym x l-.,4,r 11

BHX

BN

I

WO 94/00509 PCT/US93/06240 37 wherein M is an alkali metal; each member of the substituent pairs R' and R 2

R

3 and R 4 and R 5 and R 6 differs from the other and taken alone each signifies alkyl, cycloalkyl, or substituted versions thereof, aryl, aralkyl or alkaryl, or substituted and heterocyclic versions thereof; these substituent pairs can also be joined into a carbocyclic or heterocyclic ring; preferred versions of these substituents are those mimicking sidechain structures found in naturally-occurring amino acids; X represents an oxygen, sulfur, or nitrogen atom; and A and B are the substituents described above.

At any point in the polymer synthesis shown above, a structural species, possessing a terminal OH, -SH or -NH 2 group capable of ring-opening addition to the oxazolone and another terminal group capable of 1 5 reacting with the amino group of a cPiral a,a'disubstituted amino acid, may be inserted in the polymer backbone as shown below: A 0 A H 2 N' NCOOH

R

2 O 2 R 3

R

4

DCC

A N NCOOH HN C 2

H

H

0 AK N OgH H H A H

RV.

0o

I

WO 94/00509 PCTiUS93/0624b 38 This process may be repeated, if desired, at each step in the synthesis where an oxazolone ring is produced. The bifunctional species used may be the same or different in the steps of the synthesis.

The experimental procedures described above for oxazolone formation and use of oxazolones as acylating agents are expected to be useful in the oxazolonedirected catenations. Solubility and coupling problems that may arise in specific cases can be dealt with effectively by one with ordinary skill in the art of polypeptide and peptide mimetic synthesis. For example, special solvents such as dipolar aprotic solvents dimethyl formamide, DMF, dimethyl sulfoxide, DMSO, Nmethyl pyrolidone, etc.) and chaotropic (molecular aggregate-breaking) agents urea) will be very 1 5 useful as catenations produce progressively larger molecules.

4.2.2.2 Polymerizations Using Bifunctional Oxazolones Containing a Nucleophilic Group Alternatively, a chiral oxazolone derivative containing a blocked terminal amino group may be prepared from a blocked, disubstituted dipeptide, that was prepared by standard techniques known to those skilled in the art, as shown: R" %R 2 R %R 2

R

3 R4

I

WO 94/00509 PCI/US93/06240 39 wherein B, is an appropriate protecting group, such as Boc (t-butoxycarbonyl) or Fmoc (fluorenylmethoxycarbonyl).

One may then use this oxazolone to acylate an amine, hydroxyl, or sulfhydryl-group in a linker structure or functionalized solid support, represented generically by AXH, using the reaction conditions described above. This acylation is followed by deblocking, using standard amine deprotection techniques compatible with the overall structure of the amide the amine protecting group is orthogonal with .,;pect to any other protecting or functional groups t may be present in the molecule), and the resulting amino group is used for reaction with a new bifunctional oxazolone generating a growing chiral polymeric structure, as shown below:

I

WO 94/00509 WO 9400509PCT/US93/06240 40 AXII al A N

H

-NH

2

N

AN"

'WO 94/00509 PCT/US93/06240 41 In the reaction shown above, Y is a linker (preferably a functionalized alkyl group); X is a nitrogen of suitable structure; an oxygen or a sulfur atom; each member of the substituent pairs R' and R 2

R

3 and R 4

R"

I1 and R° differs from the other and taken alone each signifies alkyl, cycloalkyl, or functionalized versions thereof; aryl, aralkyl or alkaryl or functionalized including heterocyclic versions thereof (preferably, these R substituents mimick the side-chain of naturally occurring amino acids); substituent R can also be part of a carbocyclic or heterocyclic ring; A is a substituent as described above; and C is a substituent selected from the set of structures for A; and B, is a blocking or protecting group.

It can be seen that the above polymerization involves introduction of two amino acid residues per polymer-elongation cycle and therefore produces ligands with an even number of residues. To obtain ligands containing an odd number of residues, a preliminary step may be carried out with a suitable amino acid derivative as shown below, prepared via standard synthesis.

I

WO 94/00509 PCT/US93/06240 42 Y 0 0

N

Rn-I Rn

N'

H

I

I

S S I

Y

0 m WO 94/00509 PCT/US93/06240 -43- 4.2.2.3 Polymerization Using Bifunctional Oxazolones Containing an Additional Electrophilic Group When the substituent at the 2-position.of the oxazolone (azlactone) ring is capable of undergoing an addition reaction, that proceeds with retention of the chirality of the 4-position, the addition reaction may be combined with a ring-opening acylation to produce chiral polymeric sequences. This is shown for the case of alkenyl azlactones below. A 10(A)

Y

NH

N HNu'ZNu 2 H R RR2 -0

(B)

O O HNu 2 ZNu'

N

8 3 4 0 0 0 R' R 2 (4 NJ A Nu ND R 3 O4 N N .0A H t.

0 L AY R3 R4 HNuOuH R'

H

R2 0 H~u'ZNu' OR' L

H\

A Nu' ZNl N Z N1 Z

NO

3 HIIH 'RI N~u 2 H 00 R 3 '/R4 zNU 1 3 0 oR Nu H

NH

NH3 0 BX OR' R 2 H Z Rn1 RN Nu 3 4 Mi CHJN 0 o H 0 SUBSTITUTE SHEET WO 94/00509 PCT/US93/06240 44 In the above sequence of reactions, A denotes a structure of the form described above and HNu'-Z-Nu 2 H represents a structure containing two differentially reactive nucleophilic groups, such as methylamino-ethylamine, 1amino propane-3-thiol, and so on; groups Nu', Nu 2 Nu 3 and Nu 4 need not be identical and Z is a linker structure as described above.

Structure HNu'-Z-Nu 2 H may contain two nucleophilic groups of differential reactivity, as stated above, or if Nu' and Nu 2 are of comparable reactivity one of the nucleophilic groups is protected to prevent it from competing with the other and deprotected s.lectively following acylation; protecting groups commonly used in the art of peptide synthesis for the nucleophilic groups such as amino, hydroxyl, thio, etc.) are useful in the protection of one of the Nu substituents of the structure HNu'-Z-Nu 2 H. The product of the acylation reaction with HNu'-Z-Nu 2 H (after Nu-deprotection, if necessary) is further reacted with a new oxazolone unit in a Michael fashion, and this addition is followed by ring-opening acylation with an additional dinucleophile; repetition of this sequence of synthetic steps produces a growing polymeric molecule. Reaction conditions for carrying out these processes are similar to those described above for related polymers.

The above types of oligomers are highly useful biochemically because of their structural similarity to polypeptides. The substituents R can be chosen to tailor the steric, charge or hydrophobicity characteristics of the oligomer such that a versatile polypeptide mimetic results.

4.2.3 Functionalization of Peptides and Proteins Using Oxazolones WO 94/00509 PCT/US93/06240 In a further embodiment of the invention, the nucleophilic ring-opening of asymmetrically disubstituted oxazolones may be utilized to introduce a chiral residue or sequence in selected positions in peptides or proteins to produce hybrid molecules with improved hydrolytic stability or other properties.

The reaction of a chiral azlactone with the amino terminus of a synthetic tripeptide attached to a Merrifield support 4s shown below.

SR, R, R H H H Rs The oxazolone used in the above aminolysis may contain a blocked amino terminus which, after the aminolysis, is deblocked and used for further elongation via acylation. This synthetic variation is shown below stands for a suitable blocking group as described above).

SUBSTITUTE

SHEET

WO 94/005010 WO 940509P!' JS93/06246 46 -c: d -Iz cc0 f//N

I

NVO 94/00509 PCr/US93/06240 47 After the desired oxazolone units have been used to elongate a given pol peptide, the polyp-ptide synthesis may be continued, if desired, using standard peptide-synthesis techniques.

The stxuuture below illustrates a short polymer containing nine subunits prepared as above and detached from the solid phase synthesis support.

H 0 r 0 0 H H H

H

H10 H 0 AT H X ,XT

N

X

A.

In the polyamide structure shown above, each of the R groups signifies alkyl, cycloalkyl, or substituted version thereof; aryl, aralkyl, alkaryl, or substituted including heterocyclic versions th.reof; the R groups can define a carbocyclic or hetei cyclic ring; preferred :.ructures for the R groups are those mimicking the structures of the side-chains of naturally-occurring amino acids.

The syntheses outlined above may be carried out using procedures similar to those described previously for related molecules and macromolecules.

Alternatively, disubstituted chiral azlactones may be utilized to introduce a variety )f novel, unnatural residues into peptides or proteins using the following multistep procedure: a. Synthesis of a peptide whose carboxyl terminal residue is chiral and disubstituted, preferably via solid phase synthesis:

,NH

2

R

N H a N .H WO 94/00509 PCT/US93/06240 48 b. Detachment of the peptide prepared by solid phase synthesis from the support, with reblocking of the N-terminus if necessary, followed by cyclization producing the oxazolone as shown below:

H

N,

c. Synthesis of a second desired peptide sequence on a solid support: d. Coupling of the peptides produced in steps and above, under suitable reaction conditions, producing a novel peptide containing unnatural residues, shown below after detachment of the peptide from the support and removal of all protecting groups used during its synthesis.

I

VWO 94/0509 PC1'/US93/06240 49 in the structure above, each of the R groups signifies alkyl, cycloalkyl, aryl, aralkyl or alkaryl, or substituted or suitably heterocyclic versions thereof; the R groups may also define a carbocyclic or heterocyclic ring; preferably the R groups are structural mimetics of the side-chains of naturally-occurring amino acids.

Again, the reactions shown in steps a-d above are carried out using the conditions described abo.e for related cases. Couplings of peptide segments on a support or in solution are carried out using the traditional techniques from the field of peptide synthesis.

In a variation of the above synthesis, the oxazolone peptide produced in step above may be reacted with a variety of bifunctional nucleophilic molecules to give acylation products as shown below: H

H

N 0 HX(Z)A R H

N

RN

0

R

3 _H 0 H

N

R O X NH, S The above acylation product may be coupled with a peptide to produce novel chiral hybrids; two coupling routes may be used.

WO 94/00509 PCT/US93/06240 50 If A is a group which can be condensed with an amino group, the condensation reaction is used for coupling. For example, if A is a carboxyl group, condensation with a peptide amine using DCC or similar reagent produces the desired product. Reaction conditions and suitable (orthogonal) protecting groups well-known in the art, such as those described above, are expected to be useful.

'X "COOH

H

2 N-Pepdde-COOR

DCC

0- Deblock on Z If A is a suitable nucleophilic group hydroxyl, amino, thio, etc.) it may be used to open a peptide oxazolone containing a protected amino terminus. In the case shown below, groups Y, A and Z of the general structure shown above have been defined as follows: Y NCH 3 A SH and Z CH 2

CH,:

WO 94/00509 PCr/US93/06240 -51- 0 R3 H 0 H H II S- N S H R H II

I

R H 0 R R CH

R''

N N 0 Rd H is H 2 N H R, NH 2 S H O H i V i H

R'I

RH R C, I H0R R "H The above reactions are run under conditions, similar to those described above for related peptide syntheses. A great variety of molecules possessing nucleophilic hydroxyl, thio, amino and other groups, carbohydrates, may be conjugated with peptidic and related frameworks using reactions with suitable oxazolones as outlined above.

Alternatively, residues may be attached to or inserted into peptide chains using oxazolones with reactive groups attached at the 2-position of the ring.

This may be accomplished in either of two ways, as illustrated below for the case of 2-alkenyl azlactones.

Nucleophilic attack on an azlactone, that was previously derivatized via a Michael addition using a nucleophile of general structure AXH, with a peptide amine: c\~i imn'rtr ITC QW;:f:T WO 94/00509 PCT/US93/06240 52 Peptide-NH 2

H

,N

Peptide Michael addition of a peptide nucleophile, a sulfhydryl group, to the double bond of a 2-vinyl oxazolone, followed by nucleophilic attack on the oxazolone ring by another peptide nucleophile, an amine followed by further modifications; this sequence produces polymeric molecules of a variety of structures as shown below: 'WO 94/00509 WO 9400509PCrIUS93/06240 53 Peptide 1

SH

H

2

NZCOOH

Pepfide 2

DCC

I

WO 94/00509 PCT/US93/06240 54 4.2.4 Fabrication of Ozaxolone-Derived Macromolecular Structures Capable of Specific Molecular Recognition In an embodiment of the invention oxazolone molecular building blocks may be utilized to construct new macromolecular structures capable of recognizing specific molecules ("intelligent macromolecules"). These "intelligent macromolecules" may be represented by the following general formula: P C L- R where R is a structure capable of molecular recognition; L is a linker; P is a macromolecular structure serving as a supporting platform; C is a polymeric structure serving as a coating which surrounds P.

Structure R may be a native ligand of a biological ligand-acceptor, or a mimetic thereof, such as those described above.

Linker L may be a chemical bond or one of the linker structures listed above, or a sequence of subunits such as amino acids, aminimide monomers, oxazolonederived chains of atoms or the like.

Polymeric coating C may be attached to the supporting platform either via covalent bonds or "shrink wrapping," the bonding that results when a surface is subjected to coating polymerization well known to those skilled in the art. This coating element may be 1) a thin crosslinked polymeric film 10 50 A in thickness, 2) a crosslinked polymeric layer having controlled microporosity and variable thickness, or 3) a controlled microporosity gel. When the support platform is a icroporous particle or a membrane, as described is a microporous particle or a membrane, as described

I

WO 94/00509 PCT/US93/06240 55 below, the controlled microporosity gel may be engineered to completely fill the porous structure of the support platform. The polymeric coatings may be constructed in a controlled way by carefully controlling a variety of reaction parameters, such as the nature and degree of coating crosslinking, polymerization initiator, solvent, concentration of reactants, and other reaction conditions, such as temperature, agitation, etc., in a manner that is well known to those skilled in the art.

The support platform P may be a pellicular material having a diameter (dp) from 100 A to 1000 p, a latex particle (dp 0.1 0.2 a microporous bead (dp 1 1000 a porous membrane, a gel, a fiber, or a continuous macroscopic surface. These may be commercially available polymeric materials, such as silica, polystyrene, polyacrylates, polysulfones, agarose, cellulose, etc.

The multisubunit recognition agents above are expected to be very useful in the development of targeted therapeutics, drug delivery systems, adjuvants, diagnostics, chiral selectors, separation systems, and tailored catalysts.

In the present specification the terms "surface", "substrate" or "structure" refer either to P, P linked to C or P linked to C and L as defined above.

I

WO 94/00509 PC/US93/06240 -56- 4.2.4.1 Chiral Alkenyl Azlactone Monomers and Polymerization Products When used on an alkenyl azlactone, the azlactone ring-opening addition reaction discussed above may be used to directly produce a wide variety of chiral vinyl monomers. These may be polymerized or copolymerized to produce chiral oligomers or polymers, and may be further crosslinked to produce chiral beads, membranes, gels, coatings or composites of these materials.

RI" R 2 0

H

N

B

BYH Polymerizaton

Y

B

Other useful monomers, which may be used to produce chiral crosslinkable polymers, may be produced by Snucleophilic opening of a chiral 2-vinyl oxazolone with a suitable amino alkene or other unsaturated nucleophile.

o

H

HN-- o Ph-- h WO 94/09509 PC'/US93/06240 57 Vinyl polymerization and polymer-crosslinking techniques are well-known in the art (see, U.S.

Patent No. 4,981,933) and are applicable to the above preferred processes.

O

A N (Surface)

H

0 R1 (Surface)-CO- NH- C- CO- Y-B R2 4.2.5 Combinatorial Libraries of Peptidomimetics Derived From Oxazolone Modules The synthetic transformations of oxazolones outlined above may be readily carried out on solid supports in a manner analogous to performing solid phase peptide synthesis, as described by Merrifield and others (see for example, Barany, Merrifield, Solid Phase Peptide Synthesis, in The Peptides Vol. 2, Gross Meienhofer, J. eds., p. 1-284, Acad. Press, New York 1980; Stewart, Yang, Solid Phase Peptide Synthesis, 2nd ed., Pierce Chemical Co., Rockford, Illinois 1984; Atherton, Sheppard, Solid Phase Peptide Synthesis, D. Rickwood B.D. Hames eds., IRL Press ed. Oxford U. Press, 1989). Since the assembly of the oxazolone-derived structures is modular, the result of serial combination of molecular subunits, huge combinatorial libraries of oxazolone-derived oligomeric structures may be readily prepared using suitable solidphase chemical synthesis techniques, such as those of WO 94/00509 PCT/US93/0624C 58 described by Lam Lam, et al. Nature 354, 82 (1991)) and Zuckermann Zuckermann, et al. Proc. Natl. Acad.

Ser. USA, 89, 4505 (1992); J.M. Kerr, et al., J. Am Chem.

Soc. 115, 2529 (1993)). Screening of these libraries of compounds for interesting biological activities, e.g., binding with a receptor or interacting with enzymes, may be carried out using a variety of approaches well known in the art. With "solid phase" libraries libraries in which the ligand-candidates remain attached to the solid support particles used for their synthesis) the bead-staining technique of Lam may be used. The technique involves tagging the ligand-candidate acceptor, an enzyme or cellular receptor of interest, with an enzyme alkaline phosphatase) whose activity can give rise to color prodution thus staining library support particles which contain active ligands-candidates and leaving support particles containing inactive ligandcandidates colorless. Stained support particles are physically removed from the library using tiny forceps tht are coupled to a micromanipulator with the aid of a microscope) and used to structurally identify the biologically active ligand in the library after removel of the ligand acceptor from the complex by e.g., washing with 8M guanidine hydrochloride. With "solutionphase" libraries, the affinity selection techniques described by Zuckermann above may be employed.

An especially preferred type of combinatorial library is the encoded combinatorial library, which involves the synthesis of a unique chemical code an oligonucleotide or peptide), that is readily decipherable by sequencing using traditional analytical methods), in parallel with the synthesis of the ligand-candidates of the library. The structure of the code is fully descriptive of the structure of the ligand and used to structurally characterize biologically active ligands whose structures are difficult or WO 94/00509 PCT/US93/06240 59 impossible to elucidate using traditional analytical methods. Coding schemes for construction of combinatorial libraries have been described recently (for example, see S. Brenner and R.A. Lerner, Proc. Natl.

Acad. Sci. USA 89, 5381 (1992); J.M. Kerr, et al. J. Am.

Chem. Soc. 115, 2529 (1993)). These and other related schemes are contemplated for use in constructing encoded combinatorial libraries of oligomers and other complex structures derived from oxazolones.

The power of combinatorial chemistry in generating screenable libraries of chemical compounds in connection with drug discovery, has been described in several publications, including those mentioned above. For example, using the "split solid phase synthesis" approach outlined by Lam et al, the random incorporation of 20 oxazolones into pentameric structures, wherein each of the five subunits in the pentamer is derived from one of the oxazolones, produces a library of 205 3,200,000 peptidomimetic ligandcandidates, each ligand-candidate is attached to one or more solid-phase synthesis support particles and each such particle contains d single ligand-canditate type_ This library can be constructed and screened for biological activity in just a few days. Such is the power of combinatorial chemistry using oxazolone modules to construct new molecular candidates.

The following is one of the many methods that are being contemplated for use in constructing random combinatorial libraries of oxazolone-derived compounds; the random incorporation of three oxazolones derived fromthe amino acids glycine methyl-ethyl-glycine ,and isopropyl methyl glycine to produce 27 trimeric structureslinked to the support via a succinoyl linker is given as an example.

WO 94/00509 PCr/US93/6240 F1 3 C(

CH

3

H

2 N CO 2

H

H

3

C,

H

2 Ni:I,,.

H H2NXC02-H A suitable solid phase synthesis support, the" chloromethyl resin of Merrifield, is split into three equal portions.

Each portion is coupled to one and one of the glycines shown above after conversion to the acylated t-butyl ester derivative: r 112N(C02H 1.- 2. Neutralization H R 2

LI

H

2 N 0 o H R 2 ~H02C--(CH)-C-NHt4 co 2

®-CH

2 -Cl

CSCO

3 0 R, R 2 11 C 2 0 2 C H N F 2 (D Polystyrent R I,R 2 H, CH 3 CI i 2

CH

3

(CH

3 2

CH

The conditions for carrying out the above -transformations are well. known and used routinely in the art of peptide synthesis as described in the references given above.

Each amino acyl resin portion is treated with ain acid solution such as neat trifluoroacetic acid (TFA), or preferably, a 1:1 mixture of TFA and n .WO 94/00509 PCI'/US93/06240 -61-

CH

2 C1 to remove the t-Bu blocking group. The resulting acyl amino acid resin is treated with ethyl chlorofornate as described &'bove produicing the oxazolone resin.

0 R, R 2

.F

O-CH

2

-O

2

C-(CH

2 2 -CN2.i- 2. CH 3 0CCI ®-CH2-: 2

C-(CH

2 0 )R2 0 The three oxazolone resin portions are thoroughly mixed and the resulting mixture is split into three equal portions.

Each of the resin portions is coupled to a d3ifferent glycine protected as t-butyl ester using the conditions described above; the amide product is deprotected as described above, for each of t~ie resin portions and cyclized to the oxazolone using the reaction with ethyl chloroformate.

&CH

2 -0 2 C-(CH)-C=N R, coupling 15 YR 2 0 0 R, R I C(H 11_- H C0 2

H

0 RI R2 300 RI, R 2 R'I, R' 2

CH

3

CH-

2

CH

3

CH(CH

3 2 0 ni tmc%*rtri irr-

~_I

WO 94/00509 PCr/US93/06240 -62- The resulting resin portions are mixed thoroughly and then split again into three equal portions.

Each of the resin portions is coupled to a different glycine, containing a carboxyl protected as the t-butyl ester, and the product is deprotected using TFA as described above; the resin portions are mixed producing a library containing 27 types of resin beads, each tiype containing a single oxazolonederived tripeptide analog linked to the support via a succinoyl linker; this linker may be severed using acidolysis to produce a "solution-phase" library of peptides whose N-terminus is succinoylated.

2

R'

1 O R R 2 1. H2N C 2

&CH

2 -OC-(CH2)-C-NH R'a 01r 2

TFA

0 -CHI-O0C- CH 2 2

-C-

NH

N C0H Many modifications of this general scheme arc envisioned, including the direct attachment of the ligand candidates via a C-N bond using a benzhydryl support, which would allow the straight forward detachment of the ligand candidates from the support via acidolysis for further study ("one-head, one-peptide-analog synthesis").

tF~%-I~r r r nswvr

I

WO 94/00509 PCT/US93/06240 63 4.2.6.1 Design and Synthesis of Oxazolone-Derived Glycopeptide Mimetics A great variety of saccharide and polysaccharide structural motifs incorporating oxazolonederived structures are contemplated including but not limited to the following.

Oxazolone-derived structures which mimic native peptide ligands capable of binding to saccharide and polysaccharide receptors using the design and synthesis techniques that are described above.

Oxazolone-derived structures linking mono- ,oligo- or polymeric saccharides with each other or with other structures capable of recognizing a ligand acceptor.

A wealth of chemical methods for synthesis of the above saccharides are available. The art of carbohydrate chemistry describes numerous sugars of variety of sizes with selectively blocked functional groups, which allows for selective reactions with oxazolone and related species producing the desired products (see Comprehensive Organic Chemistry, Sir Derek Barton, Chairman of Editorial Board, Vol. 5, E. Haslam, Ed., pp. 687-815; A. Streitwieser, C.H. Heathcock, E.

Kosower, Introduction to Organic Chemistry, 4th Edition, MacMillan Publ. Co., New York, pp. 903-949.

For example, Brigl's anhydride shown below can be reacted with unhindered alcohols to produce fglucosides using well-known experimental conditions. The resulting sugar, blocked at all positions except position 2, can be used to open a suitable oxazolone using the reaction conditions described above, in the absence or presence of a Lewis acid catalyst such as BF 3 in a suitable inert organic solvent EtOAC, dioxane, etc.).

WO 94/0059 PCr/US93/06240 64

ACO

H H 0 0R 0. ~OAMH 8'Q H H R, AO O R R OAC ROH I H I 0H OH H Brigl's anhydride 0 Similarly the sugar that results from reaction of D-glucose with benzaldehyde can be readily blocked at positions 1 and 6, by sequential reactions with an, alcohol in the presence of acid, and tritylation using techniques well known in the art of carbohydrate chemistry. The resulting sugar, with position 3 unblocked can be used selectively as described above to derivatize a desired oxazolone structure.

H

2 0H

CHOH

HO

HO 0ofT_

OH

H C1 6 HSCHO

O

HO0 HH C X 6N 2.4-O-bcrzzylidne.D-glueose A suitable oxazolone can also be ring-opened by a sugar containing reactive amino substituents, an aminosaccharide, or polyaminosaccharide. For example, reaction with muramic acid is expected to proceed as follows.

OH

O

HO 0 0L AL l( HO

O

NH

2 KN-I N A COOH

R

2

COOH

mur~mic acid r

I

WO 94/00509 PCT/US93/06240 65 Similar treatment which is shown below, of the structurally interesting ambecide paromomycin, with 1 to equivalents of a tailored oxazolone is expected to produce a series of novel structures in which a branched tetrasaccharide scaffold supports peptidomimetic structures derived from oxazolones in a geometrically defined manner.

NH

2 ONH2 0 OH NH2 HO

OH

0

NH,

-NH,

OH

OH

Paromomycin Use of oxazolone-derived structures as replacements of glycosidic linkages.

Selective blocking of all but one hydroxyl in a sugar allows the selective oxidation of the hydroxyl to the carbonyl-derivative, which can then be used in an aidol-type condensation reaction with a methylene oxazolone to produce an alkene oxazolone; this can then be ring-opened, by the anomeric hydroxyl of a sugar to give a novel saccharide after deprotection.

I

t PCI'1US93/06240 WO 94/00509 66 OR OR O OH

HCI

RO T Hydrogenation H 2 0

OR

OH

O

OH OH

NH

HO

OOHA

4.2.7

OLIGONUCLEOTIDES

Design and Synthesis of Oxazolone-Derived Oliqonucleotide Mimetics The art of nucleotide and oligonucleotide synthesis has provided a great variety of suitably blocked and activated furanoses and other intermediates which are expected to be very useful in the construction of oxazolone-derived mimetics (Comprehensive Organic Chemistry, Sir Derek Barton, Chairman of Editorial Board, Vol. 5, E. Haslam, Editor, pp. 23-176).

A great variety of nucleotide and oligonucleotide structural motifs incorporating oxazolone-derived structures are contemplated including, but not limited to, the following.

IL~ WO 94/00509 PCr/US93/06240 -67- For the synthesis of oligonucleotides containing peptidic oxazolone-derived linkers in place of the phosphate diester groupings found in native oligonucleotides, the following approach is one of many that is expected to be useful.

I

I

-00

-=Z

00 F- z 0 00 1 0 .z o 0 300 o 00 0'/ 0) 0 Z U 0 0= Ci 0

CL

r% 'Im I y- r- 0% 1 P-r- WO 94/00509 WO 9400509PCr/US93/O6240 67/h- For the synthesis of structures in which an oxazolone-derived grouping is used to link complex oligonucleotide-derived units, an approach such as the following is expected to be useful.

0- 0 0 0 '-91 0 0 0 00 0,;K Q 0

C-.

rg gr~yi-rt u-ri-* t~'e 'WO 94/00509 WO 9400509PCr/US93/ 06240 68 Example: Characterization of the Enantiometric Purity of Oxfenacine This example teaches the use of the ring opening reaction of the pure chiral isomer azalactone -(-)-4-difluoromethyl-4-benzyl-2-vinyl-5-oxazolone (1) with racemic mixtures of the methyl esters of and (S)-p-hydroxyphenylglycine to form the diastereomeric conjugates and as shown: H

(S)

H2 142eH 0

H

H

2

N

of CHF, H

N

0

OH

2 0 Nh +~CF

(R)

HR 0 H H 0M >C 2 Me H2N N o

CHF

2

OH

1Ph

\O

These diastereomers can be s eparated by standard HPLC methods on normal-phase silica to quantitatively assay the enantiomeric composition of the starting pfrom which the esters are produced.

The (S)-isomer of p-hydroxyphenylglycine WO 94/00509 PCT/US93/06240 69 (oxfenacine) is an effective therapeutic agent for promoting the oxidation of carbohydrates when this process is depressed by high fatty acid utilization levels (such as occurs in ischemic heart disease), and is also an important chiral intermediate in the production of penicillin, amoxicillin and several other semisynthetic antibiotics, including the cephalosporins.

Oxfenacine is prone to racemization, and the assay for chiral purity described in this example therefore represents a useful development and quality-control tool.

6. Example: Resolution of Racemic p-Hydroxyphenyl Glycine Esterification of p-hydroxyphenyl qlvcine 0.3 g (0.2 ml) thionyl chloride was added dropwise to 5 ml of a stirred solution of 0.4 g of the stereoisomeric mixture of 4-hydroxyphenylglycine enantiomers to be characterized in methanol and the temperature of the mixture kept between 10 and 20 0 C with ice cooling. The reaction was allowed to proceed at room temperature for 1 hour. The methanol was then removed at room temperature under aspirator vacuum (10 torr) on a rotary evaporator and a solid was obtained. This solid was dissolved in 10 ml of deionized water and the pH adjusted to 9.2 with 0.88 M ammonium hydroxide. The solution was then stirred for 1 hour at 10 0 C and the precipitated solid ester mixture was filtered off, washed with deionized water and dried at 45 0 C under vacuum to give 0.41 g of product Ring-Opening Addition. 0.181 g (0.001 mol) of the esterified 4-hydroxyphenylglycine prepared as outlined above was dissolved in 10 ml of peroxide-free dry dioxane. To this mixture was added 0.251 g (0.001 mol) of (S)-4-difluoromethyl-4-benzyl-2-vinyl-5-oxazolone, and the resulting solution heated at reflux for 2 hours. The dioxane was removed by rotary evaporation and 0.43 g I WO 94/00509 PCT/US93/06240 70 (100%) of the pale yellow solid amide residue was isolated.

HPLC Analysis. A solution of the diastereomeric amides was prepared in methylene chloride at a concentration of 7 mg/ml. This solution was injected into a DuPont Model 830 liquid chromatograph equipped with a detector set at 254 nm using a 20 A1 loop valve injection system. The sample was chromatographed on a 25 cm x 0.4 cm stainless steel HPLC column packed with 5A Spherisorb S5W silica gel using a 98/1/1 cyclohexane/n-butanol/isopropanol mobile phase at a flow rate of 0.9 ml/min. The enantiomeric amide conjugates were then quantitated using a calibration curve generated with a series of synthetic mixtures containing varying ratios of the two pure enantiomers. The pure L-isomer was purchased from Schweizerhall Inc. The pure D-isomer was prepared from the commercially available D,L-racemate obtained from MTM Research Chemicals/Lancaster Synthesis Inc. by the method of Clark, Phillips and Steer Chem. Soc., Perkins Trans. I at 475 [1976]).

(S)-4-difluoromethyl. 4-benzyl-2-vinvl-5-oxazolone H 0 0 CHF2

H

Ph Ph 5.43 g (0.05 mol) of ethyl chloroformate was added with stirring to 13.46 g (0.05 mol) of N-acryloyl- (S)-2-difluoromethyl phenylalanine in 75 ml of dry acetone at room temperature. 7.0 ml (0.05 mol) of triethylamine were then added dropwise over a period of min., and the mixture was stirred at room temperature until gas evolution ceased (1.5 hours). The I~ll~-r WO 94/00509 PCT/US93/06740 71 triethylamine hydrochloride was removed by filtration, the cake was slurried in 25 ml of acetone and refiltered.

The combined filtrates were concentrated to 50 ml on a rotary evaporator, refiltered, cooled to -30 0 C and the crystallized product was collected by filtration and dried in vacuo to give 10.05 g of difluoromethyl-4-benzyl-2-vinyl azlactone. NMR (CDCl 3

CH

2 CH chemical shifts, splitting pattern in 6 ppm region and integration ratios diagnostic for structure.

FTIR (mull) strong azlactone CO band at 1820 cm".

N-Acrvlovl-(S)-2-difluoromethvy phenylalanine.

21.5 g (0.1 mol) (S)-2-difluoromethyl phenylalanine, prepared using the method described by Kolb and Barth (Liebias Ann. Chem. 1668 (1983)), was 13 added with stirring to a solution of 8.0 g (0.2 mol) of sodium hydroxide in 100 ml water and stirred at this temperature until complete solubilization was achieved.

9.05 g (0.1 mol) acryloyl chloride was then added dropwise with stirring, keeping the temperature at 15 0 C with external cooling. After addition was complete, stirring was continued for 30 min. To this solution 10.3 ml (0.125 mol) of concentrated hydrochloric acid was added over a 10-min. period, keeping the temperature at 0 C. After addition was complete, the reaction mixture was stirred an additional 30 min., cooled to 0°C, and the solid product was collected by filtration, washed well with ice water and pressed firmly with a rubber dam. The resulting wet cake was recrystallized from ethanol/water to yield 18.8 g of N-acryloyl-(S)-2-difluoromethyl phenylalanine. NMR (CDC1 3 chemical shifts, CH 2 CH splitting pattern and integration ratios diagnostic for structure 7. Example: Preparation of Chiral Chromatographic Stationary Phase Ring Opening Formation of Coniuaate with Aminopropvl Silica

M

WO 94/00509 PCT/US93/06240 72

NO

2 O-Si(CH 2 3

NH

2 0 0 0 2

N

ph

NO

2

H

IN NO O-Si(CH 2 3 -NH ,N SPh 2

H

g of aminopropyl-functionalized silica was slurried in 100 ml benzene in a three-necked flask equipped with a stirrer, a heating bath, a reflux condenser and a Dean-Stark trap. The mixture heated to reflux and the water removed azeotropically. 3.69 g (0.01 mol) of (S)-4-ethyl,4-benzyl-2-(3',5'was added and the mixture was heated at reflux for 3 hours. The mixture was subsequently cooled, and the silica collected on a Buechner filter and washed with 50 ml benzene. The wet cake was reslurried in 100 ml methanol and refiltered a total of four times. The resulting product was dried in a vacuum oven set for 30" and 60 0 C to yield 4.87 g functionalized silica. The bonded phase was packed into a 25 cm x 0.46 cm stainless-steel HPLC column from methanol, and successfully used to separate a series of mandelic acid derivatives using standard conditions.

35benzvl-2- -dinitohenl)-5-oxazolon -4-ethyl, 4-benzyl-2- 5 '-dinitrophenyl

C_

WO 9d/00509 PCT/US93/06240 73 Ph NO 2 N CH 0 °H

NO

N

NO

2 C 2 Hs Ph 1.09 g (0.01 mol) of ethyl chloroformate was added with stirring to 3.87 g (0.01 mol) dinitrobenzoyl-(S)-2-ethyl phenylalanine in 75 ml dry acetone at room temperature. 1.4 ml (0.01 mol) of trietbvlamine was added dropwise over a 10-min. period and the mixture was stirred at room temperature until gas evolution ceased (1.5 hours). The triethylamine hydrochloride was removed by filtration and the cake was slurried with 25 ml acetone and refiltered. The combined filtrates were concentrated to 50 ml on a rotary evaporator, refiltered, cooled to -30 0 C and the crystallized roduct was collected by filtration and dried in vacuo to yield 2.88 g of (S)-4-ethyl-4-benzyl-2- NMR (CDCI 3 Frequencies and integration ratios diagnostic for structure. FTIR: strong azlactone band at ca. 1820 cm'.

N-3,5-dinitrobenzloyl-(S)-2-ethylphenylalanine 19.3 g (0.1 mol) of (S)-2-ethylphenylalanine, prepared from (S)-phenylalanine and ethyl iodide using the method described by Zydowsky, de Lara and Spanton J. Org. Chem. 5437 (1990)) was added with stirring to a solution of 8 g (0.2 mol) sodium hydroxide in 100 ml water and cooled to about 10 0 The mixture was then stirred at this temperature until complete solubilization was achieved. 23.1 g (0.1 mol) I i WO 94/00f09 W 4MPda'S93/06240 74 chloride was then added dropwise with stirring, keeping the temperature at 10-150C with external cooling. After this addition was complete, stirring was continued for min. To this solution was added 10.3 ml (1.25 mol) of concentrated HC1 over a 10 min. period, again keeping the temperature at 15 0 C. During this addition a white solid formed. After the addition was complete, the reaction mixture was stirred for an additional 30 min., cooled to o"0 and the white solid was collected by filtration, washed well with ice water and pressed firmly with a rubber dam. The resulting wet cake was recrystallized from ethanol/water and dried in a vacuum oven set for at 60 0 C to yield 27.1 g N-3,5-dinitrobenzoyl-(S)-2ethyl phenylalanine.

15 Preparation of Aminopropvl-Functionalized Silica.

200 g 015M Spherosil (IBF Corporation) was added to 500 ml toluene in a one-liter three-necked round-bottomed flask equippod with a Teflon paddle stirrer, a thermometer and a vertical condenser set up with a Dean-Stark trap through a claisen adaptor. The slurry was stirred, heated to a bath temperature of 140°C and the water azeotropically removed by distillation and collected in the Dean-Stark trap. The loss in toluene volume was measured and compensated for by the addition of incremental dry toluene. 125.0 g 3aminopropyltrimethoxysilane was added carefully through a funnel and the mixture stirred and refluxed for 3 hours with the bath temperature set at 1402C. The reaction mixture was cooled to about 40°C and the resulting functionalized silica collected on a Buechner filter.

The silica was then washed twice with 50 ml toluene, sucked dry, reslurried in 250 ml toluene, refiltered, reslurried in 250 ml methanol and refiltered a total of three times. The resulting methanol wet cake was dried WO 94/0009 WO 9400509Pcr/US93/06246 75 in a vacuum oven set for 30O1 at 600C to yield 196.4 g aminopropyl silica.

8. Example: Ring-opening conjugation of naphthyl)ethylamine With The Michael-Addition Product Of Aminomercapto-Functionalized Silica And -4-Ethyl-4-benzyl-2-acryloyl-5-oxazolone To ProdUce A Chiral Chroratoqrathic Stationary Phase FormationOf Conjugate with (SI-M1-f1-naphthyll- CH3 4

N

2 0 0

I

Ph Ph 1 01 (CNS 0HhCH

H

10.*0 g -4-ethyl-4-benzyl-2- (ethyithiopropyl silica) -5-oxazolone was slurried in 100 ml benzene in a three-necked flask equipped with a stirrer, a heating bath, a ref lux condenser and a Dean-Stark trap. The mixture was heated to ref lux and the water was removed azeotropically. 3.42 g (0.02 mol) naphthyl)ethylamine was added and the mixture was heated at ref lux for 6 hours. The mixture was then cooled, the silica collected on a Buechner filter and washed with 100 benzene. The wet cake was reslurried in 100 ml WO 94/00509 PCT/US93/06240 76 methanol and refiltered a total of four times. The product was dried in a vacuum oven set for 30" and to give 9.72 g functionalized silica. The bonded phase was packed into a 25 cm x 0.46 cm stainless-steel HPLC column from methanol and successfully used to separate a series of n-acceptor amine derivatives using standard conditions described in the Chromatography Catalog distributed by Regis Chemical, Morton Grove, Ill. 60053 the 3,5-dinitro benzoyl derivatives of racemic 2amino-l-butanol alpha methyl benzye amine).

Michael Addition by Mercaptoprovyl Silica ~Z7 g mercaptopropyl silica was added to 200 ml benzene in a 500 ml three-necked round-bottomed flask equipped with a Teflon paddle stirrer, a thermometer and a vertical condenser set up with a Dean-Stark trap through a claisen adaptor. The slurry was stirred, heated to a bath temperature of 140 0 C and the water azeotropically removed by distillation and collected in the Dean-Stark trap. The loss in benzene volume was WO 94/00509 PCT/US93/06240 77 measured and compensated for by the addition of incremental dry benzene. 6.88 g (0.03 mol) of ethyl,4-benzyl-2-vinyl-5-oxazolone was added and the mixture was stirred and refluxed for 16 hours. The reaction mixture was then cooled to about 40 0 c. The resulting functionalized silica was collected on a Buechner filter, washed with 50 ml benzene, sucked dry, reslurried in 100 ml of methanol and refiltered a total of four time. The resulting methanol wet cake was dried in a vacuum oven set for 30" at 60°C to yield 19.45 g oxazolone-functionalized silica.

(S)-4-ethvl-4'-benzvl-2-acryloyl-5-oxazolone.

10.9 g (0.1 mol) of ethyl chloroformate was added with stirring to 24.7 g (0.1 mol) of N-acryloyl- (S)-2-ethyl phenylalanine in 250 ml dry acetone at room temperature. 14 ml (0.1 mol) of triethylamine was added dropwise over a 10-min. period and the mixture was stirred at room temperature until gas evolution ased hours). The triethylamine hydrochloride was removed by filtration and the cake was slurried with 50 ml of acetone and refiltered. The combined filtrates were concentrated to 150 ml on a rotary evaporator, refiltered, cooled to -300C and the crystallized product was collected by filtration and dried in vacuo to yield 19.5 g (S)-4-ethyl-4-benzyl-2-vinyl-5-azlactone.

NMR 9CDC1): chemical shifts, CH, CH splitting pattern in 6 ppm region integration ratios diagnostic for structure. FTIR (mull): strong azlactone CO band in 1820 cm" region.

Preparation of Mercaptopropyl-Functionalized Silica. 200 g of 10 (80A) Exsil silica (Exnere Ltd.) was added to 500 ml toluene in a one-liter three-necked round-bottomed flask equipped with a Teflon paddle stirrer, a thermometer and a vertical condenser set up with a Dean- WO 94/00509 PCr/US93/06240 78 Stark trap through a claisen adaptor. The slurry was stirred, heated to a bath temperature of 1400C and the water was azeotropically removed by distillation and collected in the Dean-Stark trap. The loss in toluene volume was measured and compensated for by the addition of incremental dry toluene. 110.0 g of 3mercaptopropyltrimethoxysilane was added carefully through a funnel and the mixture was stirred and refluxed for 3 hours with the bath temperature set at 1400C. The reaction mixture was then cooled to about 40 0 C. The resulting functionalized silica was collected on a Buechner filter, washed twice with 50 ml toluene, sucked dry, reslurried in 250 ml toluene, refiltered, reslurried in 250 ml methanol and refiltered a total of three times.

The resulting methanol wet cake was dried in a vacuum oven set for 30" at 60°C to yield 196.4 g of mercaptopropyl silica.

Chiral azlactone conjugates may similarly be produced using a variety of azlactone derivatives containing at the 2-position other groups capable of undergoing addition (and sequential ring-opening) reactions. Examples of these groups include hydroxyalkyl, haloalkyl and oxirane groups.

9. Example: Synthesis of a Mimetic of Known Human Elastase Inhibitor This example teaches the synthesis of a competitive inhibitor for human elastase based on the structure of known N-trifluoroacetyl dipeptide analide inhibitors see, 107 Eur. J. Biochem. 423 (1980); 162 J. Mol. Biol. 645 (1982) and references cited therein.

WO 94/00509 WO 9400S09PCr/US93/06240 79

CP

3 COC1 0 Phi '11.4CH 3 CF3-

H

2 N INC0 2

H

0I OH

NH

2 1LJ~tr~f1unroacetv1~(S)-2-ThethV1 Thutv1-(S~ -2- N-trifluoroacetvl-(SI-2-inethvl leucvl-(S) 2- 35ethvlphenvlalan-1--r-isoprOpylanlide .WO 94/00509 PC/US93/06240 80 0.135 g (0.001 mol) 4-isopropyl anali is dissolved in the minimum amount of an appropriate solvent, such as acetonitrile, and 0.384 g (0.001 mol) of 2-(N-trifluoroacetyl-(S)-2-methyl leucyl)-(S)-4-methyl-4dissolved in the mininum amount of the same solvent is added gradually to the stirred solution with cooling. Following addition, the reaction mixture is allowed to come to room remperature and is stirred at room temperature for 36 hours. The solvent is then removed in vacuo to yield the solid N-trifluoroacetyl- (S)-2-methyl-leucyl-(S)-2-ethylphenylalanyl analide, useful as a competitive inhibitor of human elastase in essentially quantitative yield.

2-(N-trifluoroacetvl-(S)-2-methylleucyl)-(S)-4-methyl-4- 4.1 g (0.01 mol) N-trifluoroacetyl-(S)-2methylleucyl-(S)-2-methylphenylalanine lithium salt is slurried in 50 ml of an appropriate solvent, such as dry benzene, in a three-necked round-bottomed flask equipped with a stirrer, heating bath, claisen head, downward condenser, thermometer and dropping funnel. The system is heated to 65 0 C, and 1.09 g (0.01 mol) of ethyl chloroformate dissolved in 10 ml dry benzene is added over a 10-min. period. Addition is accompanied by the vigorous evolution of gas and the distillation of a benzene/ethanol azeotrope. Following the completion of the addition, heating is continued for 30 min. The heating bath is then removed and the slurry is stirred for an additional 15 min. The precipitated lithium chloride is carefully removed by filtration and the cake is triturated with benzene and refiltered. The combined filtrates are stripped using a pot temperature of 400C to yield 3.50 g of crude oxazolone. The product was purified by recrystallization from acetone at -30 0

C.

FTIR (mull): Strong azlactone CO band in 1820 cm 1 region.

WO 94/00509 PCT/US93/06240 81 N-trifluoracetvl-(S)-2-methylleucvl-(m)-2methylphenvalaanine.

2.23 g (0.01 mol) 2-trifluoroacetyl-(S)-4is dissolved with stirring in the minimum amount of an appropriate solvent, such as acetonitrile, and 1.85 g (0.01 mol) of the lithium salt of (S)-2-methyl phenylalanine in the minimum amount of the same solvent is added gradually, and with cooling.

This salt is obtained by treatment of methylphenylalanine (produced from (S)-phenylalanine and methyl iodide using the method of Zydoski et al., 55 J.

Orq. Chem. 5437 (1990)) with one equivalent of LiOH in an appropriate solvent, such as ethanol, followed by removal of the solvent in vacuo. After addition of the lithium salt, the reaction mixture is allowed to warm to room temperature and is stirred at room temperature for 36 hours. The solvent is then removed in vacuo to yield the solid N-trifluoroacetyl-(S)-2-methylleucyl-(S)-2methylphenylalanine lithium salt in essentially quantitative yield.

2-trifluoroacetyl-(S)-4-methyl-4-isopropyl-5-oxazolone.

12.05 g (0.05 mol) of N-trifluoroacetyl-(S)-2methyl-leucine was stirred at room temperature in 100 ml dry acetone and 5.43 g (0.05 mol) ethyl chloroformate was added. 7.0 ml (0.05 mol) of triethylamine was added dropwise over a period of 10 min. and the mixture was stirred at room temperature until gas evolution ceased hours). The triethylamine hydrochloride was removed by filtration and the cake was slurried with 25 ml of acetone and refiltered. The combined filtrates were concentrated to 75 ml on a rotary evaporator, refiltered, cooled to -300C and the crystallized product was collected by filtration and dried in vacuo to yield 10.6 g of (S)-4-methyl-4-isobutyl-2-trifluoroacetyl-5- .WO 94/00509 PCT/US93/06240 82 oxazolone. FTIR (mull): strong azlactone CO band in 1820 cm' 1 region.

N-trifluoroacetyl-(S)-2-methyl-leucine.

14.5 g (0.1 mol) of (S)-2-methyl-leucine, prepared from D,L-leucine methyl ester hydrochloride using the method of Kolb and Barth (Liebiq's Ann. Chem.

at 1668 (1983)) was added with stirring to a solution of 8 g (0.2 mol) of sodium hydroxide in 20 ml water, cooled to 10 0 C, and the mixture stirred at this temperature until complete solubilization was achieved. 13.25 g (0.1 mol) trifluoroacetyl chloride was then added dropwise with stirring, keeping the temperature at 100C with external cooling. After the addition was complete, stirring was continued for 30 min. To this solution was added, over a 10-min. period, 10.3 ml (0.125 mol) of concentrated hydrochloric acid, again keeping the temperature at 15 0 C During the addition, a white solid formed. After the addition was complete, the reaction mixture was stirred for an additional 30 min. and cooled to OOC. The white solid was collected by filtration, washed well with ice water and pressed firmly with a rubber dam. The resulting wet cake was recrystallized from ethanol/water and dried in vacuo to give 17.4 g of N-trifluoroacetyl-(S)-2-methyl-leucine which was used directly in the following step in the sequence (above).

11. Example: Synthesis of a Pepstatin Mimetic This example teaches the synthesis of an oxazolone-derived mimetic of the known aspartyl protease inhibitor, pepstatin, which has the structure shown: WO 94/00509 WO 9400509PCr/US93/06240 83

H

>-Y1

N.

0a; This mimetic is useful as a competitive inhibitor for proteases inhibited by pepstatin.

rA 0 8N C02H +-xCe, oco 2 c~ HN 00 2

U

XCM

0 0 0 CH 3 .WO094/00509 PCT/US93/06240 84

H

2 N rGCIH Boc CH

';"CH

3 0 CH 3 WO 94/00505 PCT/US93/06240 85 N-isovaleryl-(S)-2-methylvalervl-(3S,4S)-statvl-(S)-2methyl-alanyl-(3S.4S)-statine.

The Boc-protected lithium salt prepared as described below simultaneously converted to the acid form and deprotected by treatment with acid under standard deprotection conditions. 5.17 g (0.01 mol) of Nisovaleryl-(S)-2-methy derivative added to 100 ml dry acetonitrile, stirred at room temperature and 3.17 g (0.01 mol) of the valyl-(S)-4-methyl-4-isopropyl-5oxazolone was added with cooling. Once addition was complete, the mixture was heated to reflux and held at reflux for 1 hour. The solvent then stripped in vacuo -o give a quantitative yield of N-isovaleryl-(S)-2methylvalyl-(3S,4S)-statyl-(S)-2-methylalanyl-(3S,4S)statine, useful as a pepstatin-mimetic competitive inhibitor for aspartyl proteases which are inhibited by pepstatin (see, 23 J. Med. Chem. 27 (1980) and references cited therein). NMR (d 6 DMSO): chemical shifts, integrations and D 2 0 exchange experiments diagnostic for structure.

N-Boc-(3S.4S)-statyl-(S)-2-methyllalnyl-(3S.4S)-statine lithium salt.

6.84 g (0.02 mol) of the Boc-protected oxazolone prepared below stirred in 100 ml of dry acetonitrile at room temperature and 3.62 g (0.02 mol) of the lithium salt of (3S,4S)-statine, prepared from statine using the method outlined below, was added with cooling. Once addition was complete, the mixtLre was heated to reflux and held at reflux for 1 hour. The solvent was then stripped in vacuo to give a quantitative yield of N-Boc-(3S,4S)-statyl-(S)-2-methylalanyl-(3S,4S)statine lithium salt.

Boc-protected (3S,4S)-statine, [(3S,4S)-4amino-3-hydroxy-6- methylheptanoic acid] was produced from the commercially available amino acid, coupled with 'WO 94/00509 PC/US3/06240 86 2-methylalanine using standard peptide synthesis methods and converted to the lithium salt using the method described below. 18.30 g (0.05 mol) of this derivative was stirred in 150 ml dry acetonitrile at room temperature, 5.45 g (0.05 mol) of ethyl chloroformate and 57.0 ml (0.05 mol) of triethylamine were sequentially added with stirring and the mixture was stirred at room.

temperature until gas evolution ceased (1.5 hours). The mixture was then stripped to dryness on a rotary evaporator, the residue was triturated with 100 ml of benzene, filtered to remove salts, and the filtrate was again stripped on a rotary evaporator to yield 16.4 g of crude 2-BOC-(3S,4S)-statyl-4,4-dimethyl-5oxazolone. Analytically pure material was obtained by recrystallization from acetone at -30 0 C. NMR (CDC13) chemical shifts and splitting patterns diagnostic for structure. FTIR (mull): shows a strong azlactone CO band in the 1820 cm' region.

N-isovalervl-(S)-2-methylvalyl-(S)-4-methyl-4-isopropyl- 2 13.46 g (0.04 mol) of 2-isovaleryl-(S)-2methylvalyl-(S)-2- methyl valine lithium salt, as prepared below, was stirred in 150 ml of dry acetonitrile at room temperature. 4.36 g (0.04 mol) of ethyl chloroformate and 5.6 ml (0.04 mol) of triethylamine were then sequentially added with stirring, and the m.'xture was stirred at room temperature until gas evolution ceased (1.5 hours). The mixture was then stripped to dryness on a rotary evaporator, the residue was triturated with 100 ml benzene, filtered to remove salts, and the filtrate was again stripped on a rotary evaporator to yield 12 g of crude N-isovaleryl-(S)- 2-methylvalyl-(S)-4-methyl-4-isopropyl-5-oxazolone.

Analytically pure material was obtained by recrystallization from acetone at -300C. NMR (CDC13): WO 94/00509 PCT/US93/06240 87 chemical shifts and splitting patterns diagnostic for structure. FTIR (mull): shows strong azlactone CO band in the 1820 cm'- region.

N-isovalervl-(S)-2-methylvalyl-(S)-2-methyl valine lithium salt.

6.85 g (0.05 mol) of (S)-2-methylvaline lithium salt, prepared from (S)-methyl valine by the method described below, was stiired in 150 ml dry acetonitrile at room temperature and 9.93 g (0.05 mol) of the oxazolone prepared -low was added portionwise with cooling. Once addition was complete, the mixture was heated to reflux and held at reflux for 1 hour. The solvent was then stripped in vacuo to give a 98% yield of N-isovaleryl-(S)-2-methylvalyl-(S)-2-methyl valine lithium salt. This salt was used directly in the next step (above).

2-isovalervl-(S)-4-methyl-4-isopropvl-5-oxazolone.

2-(S)-methylvaline was prepared from (S)-valine by the method described by Kolbe and Barth (Liebias Ann.

Chem. at 1668 (1983)), and was acylated with isovaleryl chloride using rtandard acylation methods to produce Nisovaleryl-(S)-methylvaline, this was subsequently treated with one equivalent of LiOH in ethanol, followed by removal of the solvent in vacuo to yield the Nisovaleryl-(S)-methylvaline lithium salt. 22.3 g (0.1 mol) of this Li salt was stirred in 150 ml of dry acetonitrile at room temperature, 10.9 g (0.01 mol) of ethyl chloroformate and 14 ml (0.1 mol) of triethylamine were sequentially added with stirring, and the mixture was stirred at room temperature until gas evolution ceased (1.5 hours). The mixture was then stripped to dryness on a rotary evaporator, the residue was triturated with 150 ml benzene, filtered to remove salts and the filtrate was again stripped on a rotary WO 94/00509 I'C/US9306240 88 evaporator to yield 17.4 g of crude 2-isovaleryl- (S)-4-methyl-4-isopropyl-5-oxazolone. Analytically pure material was obtained by re-crystallization from acetone at -30 0 C. FTIR (mull): shows a strong azlactone CO band in the 1820 cm' region. NMR (CDC,13): chemical shifts and splitting patterns diagnostic for structure.

12. Example: Synthesis of a Mimetic Inhibitor of the HIV Protease This example teaches the synthesis of a competitive inhibitor for the HIV protease, based on the insertion of a chiral azlactone residue into a strategically important position in the scissile position of the known substrate, Ac-Ser-Leu-Asn-Phe-Pro-Ile-Val- OMe. See, 33 J. Med. Chem. 1285 (1990) and references cited therein.

0 0 HN 7

DMF

HQ-P

Ph CO-L-le-L-Val-OMe N McO-D-Se(Bzl)-D-.LcuDAsn-NHZ

O

N CO-L-Ile-L-Val-0Me Ph: Q Ph 0 McO.DSDeu.D-Asn dcqxst= e MeO-D-Scr-D-Leu-D-Asn- j hW ~r Iw WO 94/00SO9 PCr/US93/06240 89 0.341 g (1 mmol) of HN-(L)-Pro-(L)-Ile-(L)-Val- OMe prepared using standard peptide-synthesis techniques, is dissolved in the minimum amount of DMF. To this mixture is added 0.229 g (1 mmol) 2-acryloyl-(S)-4-ethyldescribed above, and the mixture is stirred at room temperature until the Michael addition reaction has proceeded to completion (as monitored by TLC). 0.393 g (1 mmol) of MeO-D-Ser(Bzl)-D-Leu-D-Asn-NH 2 prepared from the BOC-protected D-amino acids using standard peptide protection and coupling chemistries (see, J. Med. Chem. 1285 (1990) and references cited therein) is then added and the mixture is heated to 0 C and stirred at this temperature for an additional 12 hours. The DMF is then removed under high vacuum and the residue is purified by standard C18 reverse-phase chromatography to yield the protected peptide. The sidechain blocking groups are subsequently removed using standard peptide deprotection techniques to yield the product MeO-D-Ser-D-Leu-D-Asn-NH-CO-(S)-Phe-[Ms]-NH-CO- CH2-CH2-L-N-Pro-L-Ile-L-Val-OMe, useful as a competitive inhibitor for the HIV protease.

13. Example: Synthesis of a Mimetic Inhibitor for the HIV Protease This example teaches the synthesis of another competitive inhibitor for the HIV protease. In this case the phenyl substituent is replaced with a uracil derivative.

WO 94/00509 PCT/US93/06240 90

H

2 N-DeWval-e s1 i C02H

H

MeO-D-Ser-D-Leu-D-Asn-NH dONH-Ule-Val-OMe 0.82 g (1 mmol) of the uracil derivative, whose preparation is described below, is coupled through the free proline carboxylic acid group to 0.244 g (1 mmol) of Ile-Val-OMe using standard peptide coupling methods. The product is purified by standard C18 reverse-phase chromatography to yield the protected peptide. The Bzl side-chain blocking group is then removed using standard deprotection techniques to yield the product shown above, useful as a competitive inhibitor for the HIV protease.

I

WO 94/00509 PCT/US93/0624; 91 H-Asn-D-Leu-D-S C(BZI)-OMe DFO C0 2

H

'V 0.47 g (1 mmol) of the (S)-(S)-prolinevinylazlactone Michael adduct is dissolved in the minimum amount of DMF. 0.488 g (1 mmol) of MeO-D-Ser-(Bzl)-D- Leu-D-Asn-NH 2 prepared from the BOC-protected amino acid via standard peptide synthesis techniques (see, 33 J. Med. Chem. 1285 (1990) and references cited therein) is then added and the mixture is heated to 60 0 C and stirred at this temperature for 12 hours. The DMF is then removed under high vacuum to yield 0.95 g of crude product.

WO 94/00509 PCT/US93/06240 92

H

SCH

3

'N

dU 2.33 g (5 mmol) of L-proline is dissolved in the minimum amount of DMF, 1.75 g (5 mmol) of racemic uracil-functionalized azlactone is added and the mixture is stirred at room temperature until the Michael addition reaction proceeds to completion (as monitored by TLC).

The DMF is then removed under high vacuum and the diastereomeric mixture is purified by standard normalphase chromatography to give the desired (S)-(S)-Michael adduct.

I

WO 94/00509 PCT/US93/06240 93 3.69 g (0.01 mol) racemic N-acryloyl-2-methylis stirred with 50 ml of dry acetone and 1.09 (0.01 mol) of ethyl chloroformate was added. 1.4 ml (0.01 mol) of triethylamine is added dropwise over a period of 10 min. and the mixture is stirred at room temperature until the evolution of gas ceases (1.5 hours). The triethylamine hydrochloride is removed by filtration and the cake was slurried with ml of acetone and refiltered. The combined filtrates are concentrated to 50 ml on a rotary evaporator, cooled to 0 C and the crystallized product collected by filtration and dried in vacuo to yield racemic 4-(2-methyl-5'- [3'methyluracil])-4-methyl-2-vinylazlactone.

WO 94/00509 PCT/US93/06240 94

O

CH3 NH

N

H CN N I CH COgEt 0 0H,

N

0

H

CH 3 N/

N

N CH CCO 2 Et O S

HN

H

17.15 g (0.05 mol) of the racemic ethyl ester is added with stirring to a solution of 4.0 g (0.1 mol) sodium hydroxide in 100 ml water. The mixture is stirred until complete solubilization is achieved, and then cooled to 0 C. 0.05 g 2,6-di-t-butyl-p-cresol is added as a polymerization inhibitor followed by 4.52 g (0.05 mol) acryloyl chloride, which is added dropwise with stirring, keeping the temperature at 10-150C with external cooling.

To this solution is then added over a 10-min. period 5.7 ml (0.0625 mol) concentrated hydrochloric acid, again keeping the temperature at 15°C. After the addition is complete, the reaction iixture is stirred for an additional 30 min., .cooled to 0 C, and the solid product is collected by filtration, washed well with ice water and pressed firmly with a rubber dam. The resulting wet cake is recrystallized from ethanol/water, and the wet cake is hydrolized with 6N HCL to yield 12.91 g of racemic 1 WO 94/00509 PCT/US93 95 1 CH C0E t KCO3

N

H

0 o

CH

3 NNH 2 N CHj C 2 Et

H

20.5 g (0.1 mol) of the Schiff base prepared from the ethyl ester of alanine and benzaldehyde according to the method of O'Donnell et al. (23 Terahedron Lett. 4259 (1982)) and 17.4 g (0.1 mol) of 3in the mimimum amount of methylene chloride is added dropwise with stirring to a mixture of finely powdered potassium hydroxide and a catalytic amount (0.01 eq) of the phase-transfer reagent

C

6 HsCH 2 NEt 3 C1 in the same solvent at 0C. Following addition, the mixture is stirred at 10 0 C until the starting material is consumed (approximately 2 hours).

An aqueous workup is followed by mild acid hydrolysis of the crude with IN HC1/Et20 at OOC for 3 hours to yield 29.5 g of the racemic a-methyl amino acid ester.

Synthesis of A. 74.08 g (1 mol) of N-methyl urea and 216.2 g (1 mol) of diethylethoxymethylenemalonate are heated together at 122 OC for 24 hours, followed by 170 0 C for 12 hours to yield the 3-methyluracil-5-carboxylic acid ethyl ester in 35% yield, following recrystallization from ethyl acetate.

WO 94/00509 WO 9400509PCT/US93/06240 96 B. 3C g 3-methyluracil-5-carboxylic acid ethyl ester was saponified with 10% NaOH to give the free acid in 92% yield, after standard work-up and recrystallization from ethyl acetate.

C. 20 g of 3-methyluracil-5-carboxylic acid decarboxylated at 260 0 C to give a quantitative yield of 3 -methyluracil.

3-xethyluracil-5-carboxylic acid was treated with HCL and CH 2 O using standard chloromethylation conditions to yield 3-methyl-5-chloromethyluracil in 52% yield, following standard work-up and recrystallization from ethyl acetate.

M

WO 94/00509 WO 9400509PCr/US93/06240 97 CHaNH) NH 2 EZO

CO

2 Et

CO

2 Et

(A)

1. 122 0 Cj24h 2, 170 0 C/12i

(B)

(C)I 260 0

C

-C0 2

CH

2

O/

HCI

I I WVO 94/00509 PCT/US93/06240 98 14. Example: Preparation of a Chiral Crosslinking Conjugate Monomer 0 o OO 0 N

H

S PhCH 2 PhCH CH H 4.59 g (0.02 mol) (S)-4-ethyl,4-benzyl-2-vinylas prepared in Example 3.3.3 above was added portionwise to a stirred solution of 1.14 g (0.02 mol) allyl amine in 75 ml of methylene chloride cooled to 0OC with an ice bath. After 15 nin. the mixture was allowed to warm to room temperature, and was then stirred at room temperature for 4 hours. The solvent was stripped under aspirator vacuum on a rotary evaporator to yield 5.7 g of crude monomer, identified by NMR and FTIR analyses. The product was recrystallized from ethyl acetate to yield pure white crystalline monomer, useful for fabricating crosslinked chiral gels, beads, membranes and composites for chiral separations.

Examples: Synthesis of Conjugate Useful in Isolation and Purification of Serotonin-Binding Receptors 28.6 g (0.1 mol) of sieve-dried octadecane thiol and 13.9 g (0.1 mol) of 2-vinyl-4,4'dimethylazlactone are mixed in a dry round-bottomed flask equipped with a magnetic stirrer and a drying tube filled with Drierite and cooled in an ice bath. After 1 hour the mixture is allowed to come to room temperature and is held at room temperature for four days. The product is then dissolved in 250 ml of a suitable solvent, the system cooled in an ice bath, and a chilled solution of 17.62 g (0.1 mol) of serotonin in 250 ml of the same

I

WO 94/00509 PCT/US93/06240 99 solvent is added over a 30-min period. The reaction mixture is allo,.ed to come to room temperature over a 2hour period and stirred at room temperature for a further 4 hours. The soltent is then removed by freeze drying to yield 60 g of the derivative

CH

3 (CH SCH2C ON(CH 2

)CH

2 CHC CH 3 2

CONHCH

2

CH

2

,NH

OH

which is useful as a ligand for the stabilization and isolation of serotonin-binding membrane receptor proteins.

PRODUCT]

16. Example: Synthesis of a Conjugate Useful in the Isolation and Purification of the Morphine Receptor

I

WO 94/00509 PCr/00309 US932VN2A 100

CH

3 0 0

HO

N

C

CH3

(U)

(IV)

H H To a solution of 0.285 g (0.001 mel) of norcodeine dissolved in 5u ml of the appropriate solvent, such as benzene, is added a solution of 0.139 g (0.001 mol) of 4,4'-dimethylvinylazlactone (II) in 10 ml of the same solvent. The resulting solution is heated to OC and held at this temperature for 10 hours. At the end of this time the solvent is removed under vacuum to yield 0.42 g of the Michael adduct (III). 0.21 g (0.0005 mol) of this adduct is added portionwise over a 30 minute period, with stirring, to 0.23 g (0.0005 mol) of lucifer Fellow-CH (IV) in 50 ml of a 1:1 mixture of water and an appropriate solvent, such as acetone, adjusted to pH 1 II I WO 94/00509 PCT/US93/06240 101 at 0 OC under a nitrogen blanket. The reaction mixture is stirred at 0 °C for 1 hour and then allowed to come to room temperature. The mixture is then stirred at room temperature under a nitrogen blanket for 7 days. The solvent is removed under vacuum and the water is removed by freeze drying to give the product is useful as a probe for the study of receptor proteins that bind morphine and its derivatives, 17. Example: Synthesis of Conjugate j.eful in the Isolation and Purification of Proteins Binding Cibacron Blue To 4.03 g (0.01 mol; of a stirred solution of thiocholesterol in 100 ml of an appropriate solvent, such as benzene, is added a solution of 1.39 g (0.01 mol) of 2-vinyl-4,4'-dimethyl-5-azlactone in 10 ml of the same solvent. The mixture is heated to 70 OC and stirred at this temperature for 4 hours. TL-. solvent is completely removed under vacuum and the product (VI) is redissolved in 200 ml of dimethyl formamide. This solution is cooled in an ice bath and 8.5 g (0.01 mol) of the Cibacron Blue derivative (VII), prepared as described below, dissolved in m-O ml of DMF and 100 ml of triethylamine is added over a 30 min period. The reaction mixture is stirred with cooling for 1 hour, allowed to come to room temperature amd stirred for 12 hours. The mixture is then added to 1 liter of 25% NaCl in water at 0 OC and stirred for 15 min; then 100 ml of 10M hydrochloric acid is added with stirring and cooling, and the blue precipitate is collected by filtration, reslurried in 1 liter of water and refiltered. This extraction procedure is repeated two more times. The product (VIII) is dried at 60 OC in a vacuum oven at 30" of v:icuum. (VIII) is useful for inserting and positioning the Cibacron Blue functionality, which is a broadly versatile affinity recognition ligand in cell membr:,.es for the study of Ir M WO 94/00509 WO 94/0509 ICr/US93/O6240 102 transmembrane processes involving proteins that bind to the dye function.

'-So 3 .03S.

.0 3

S'

VII

PCT/US93/06240 WO 94/00509 PrU9/64 103 0 3

S

.0 3

S

H

3

C

viii NVO 94/00509 PCT/US93/06240 104 Preparation of Cibacron Blue Derivative (VIII) 40.0 g (0.05 mol) of Cibacron Blue F3 GA is dissolved in 1 liter of DMF at 40 OC with stirring. To this solution is added 26.5 g (0.23 mol) of hexamethylene diamine with stirring, followed by 4.0 g (0.05 mol) of pyridine. The reaction mixture is allowed to stir overnight and the pH is adjusted to 2.0 by the addition of 80 ml of 10M hydrochloric acid and 940 g of NaCl. liters of water are added to precipitate the modified dye. The mixture is stirred for 1 hour and the dye is 10 collected by filtration. The cake is washed with an additional 3.5 liters of water at pH 2.0 water and dried at 70 OC in a vacuum oven at 30" of vacuum to yield 34.0 g of the amino-functionalized dye (VII).

1 5 18. Example: Synthesis of a Photoreactive Conjugate Useful in the Isolation and Purification ,f B-N-AcetylQlucosamidase 3.63 g (0.01 mol) of 2-acetamido-2-deoxy-lthio-b-D-glucopyranose-3,4,6-triacetate (IX) and 1.39 g of 2-vinyl-4,4'-dimethylazlactone are dissolved with stirring in 100 ml of an appropriate solvent, heated to OC and held at this temperature with stirring for 12 hours. At the end of this time the mixture is cooled to room temperature and 1.53 g (0.01 mol) of dopamine, dissolved in 50 ml of the same solvent is added, with cooling and stirring, over a 30 min period. The temperature is the allowed to rise to room temperature and the reaction mixture is stirred overnight. The solvent is then removed by freeze drying to produce 6.5 g of the product which is useful for the study of beta- N-acetylglucosamidase and related proteins of similar specificity, since the carbohydrate functionality can bind to these proteins (See 350 Biochim. Biophvs. Acta.

437 (1974)). The dopamine-connected catechol functionality is a photographic developer, capable of

I

WO 94/00509 PCT/US93/06240 105 photographic amplification by means of standard techniques.

O H 3

C

0 N0 AcOH 2 C AcOH 2 C H

NH

1 0

SH

AcO NHAc AcO NHAc

OH

(IX)

(X)

OH

15 19. Example: Synthesis of a Liqand of Protein Kinase 100 mg of the 20-mer cysteine variant, Cys-Thr- Tyr-Ala-Asp-Phe-Ile-Ala-Ser-Gly-Arg-Thr-Gly-Arg-Arg-Asn- Ala-Ile-His-Asp, of a protein kinase natural binding peptide ligand PK (5-24) (See, 253 Science 414 (1991)), synthesized by standard peptide synthesis techniques, is shaken with 7 mg of 2-vinyl-4,4'-dimethyl azlactone in ml of an appropriate solvent at room temperature for 6 days. At the end of this period 23 mg of Lucifer Yellow CH in 0.5 ml of water is added, and the mixture is shaken at room temperature for 6 hours. The solvents are removed by freeze drying to yield 130 mg of the bifunctional adduct which is useful as a ligand for competitive evaluation of the binding affinity of competitive ligands for protein kinases and structurally similar proteins.

I_ WO 94/00509 PCT/US93/06240 106 o H CH 0 0 0 0 A1-I Thr N. N.1 Gly LiO 3 S SO 3 Li HO-Asp-His-Ile-Ala-Asn-Arg-Arg Example: Synthesis of Materials Useful as Coatings This example describes preparation of a coating 1 0 ty a ring-opening reak::ion followed by Michael-addition.

In the first synthetic step, 8.82 g (0.113 mol) of 95% N-methylethylenediamine were dissolved in 75 ml methylene chloride with stirring and cooled to 0 °C in an ice bath. Then, 13.9 g (0.10 mol) of dimethylvinylazlactone (the starting species illustrated in Eq. 3 with R 2

R

3

CH

3 pre-cooled to 0 OC were added to the methylene chloride mixture such that the temperature remained below 5 The solution was then stirred at room temperature. After approximately 15 min a white precipitate began to form. The mixture was stirred for an additional 2 h at 0 OC. A white solid was collected on a Buechner funnel, washed twice with 25 ml methylene chloride and air dried to yield 13.92 g of the ring-opened adduct, identified by nuclear magnetic resonance (NMR) and Fourier transform infrared reflection (FTIR) spectroscopy as follows: NMR (CDC1 3

CH

3 -N/gem (CH3) 2 ratio 1:2; CH, CH splitting pattern in 6 ppm regioin, integration ratios and D 2 0 exchange experiments diagnostic for structure. FTIR (mull): azlactone CO band at 1820 cm' 1 absent; strong amide bands present in 1670 1700 cm' 1 region.

WO 94/00509 PCT/US93/06240 107

CH

3

H

2

C=CH-C-NH-C-C-NH-CH

2

-CH

2

-NH-CH

3 II I I o H 3 C 0

(I)

In the next synthetic step, 6.39 g (0.3 mol) of and 4.17 g (0.3 mol) of dimethylvinylazlactone were 1 0 dissolved in 50 ml of benzene and heated to 70 °C for 4 h. The flask was cooled to room temperature, stoppered and allowed to stand for 3 days at room temperature. The solvent was then decanted off from the thick oil that had formed. This oil was dissolved in 50 ml acetone and stripped to produce another thick oil. This latter oil was pumped on at 1 torr overnight to yield 3.53 g of a white crystalline solid, identified by NMR and FTIR spectroscopy as follows: NMR: CH 3 -N/gem (CH 3 2 ratio 1:4;

CH

2 CH splitting pattern in 6 ppm region, integration ratios and D 2 0 exchange experiments diagnostic for structure. FTIR (null): strong azlactone CO band at 1800 cm' 1 CH3 CH3 CH 3 I H I N

H

2

C=CH-C-NH--C-N-CH

2

CH

2

-N-CH

2

CH

2 0 H 3 C O

O

(II) o In the final synthetic step, 3.5 g (0.01 mol) of (II) and 1.61 g (0.01 mol) of H 2

N(CH

2 3

CH(OCH

s 2 were dissolved in 50 ml acetone chilled to 0 OC and stirred for 4 h at 0 OC. The solution was allowed to come to room temperature and to stand for 2 days. The resulting WO 94/00509 PC/US93/06240 108 yellowish solution was stripped and pumped on at 1 torr at room temperature overnight to produce 5.0 g of a white solid. 4.5 g of this solid were dissolved in hot ethyl acetate, brought to the cloud point with hot hexane and allowed to crystallize at room temperature overnight.

3.54 g of a white crystalline solid were obtained after collection by filtration and drying in a vacuum oven adjusted for a 30" vacuum at room temperature overnight.

The final product was identified by NMR and FTIR spectroscopy as follows: NMR (CDC1 3

CH

2 CH splitting pattern in 6 ppm region, integration ratios and

D

2 0 exchange experiments diagnostic for structure. FTIR (mull): azlactone CO band at 1820 cm' absent.

CH3 CH3 CH3

PC

2

H

H

2 C= CH-C-NH-C-C-N-CHH 2

-N-CHHI

2 -C-N-C-C-N-CHHiH 2

-CH

II 1 II if 1 11 0 H 3 C 0 H 3 C 0 OC 2

H

(m) 21. Example: Preparation of Coated Silica Supports Useful in Affinity Chromatography This example describes preparation of an affinity coating from compound (III) as prepared in the previous example.

1.76 g (0.0034 mol) of (III) and 0.328 g (0.0032 mol) of n-methylol acrylamide were dissolved in ml methanol, after which 1.11 ml water were added. To this solution were added 5 g of glycidoxypropyltrimethoxysilane-functionalized silica ("Epoxy Silica"). The mixture was stirred in a rotary at room temperature for 15 min and then stripped, using a bath temperature of 44 OC, to a volatiles content of as measured by weight loss (from 25-200 °C with a sun gun). The silica, coated as a result of exposure to the WO 94/00509 PCT/US93/06240 -109mixture of ingredients, was slurried in 50 ml isooctane containing 32.0 mg VAZO-64 the polymerization catalyst 2,2'-azobisisobutyronitrile dissolved in 0.5 ml toluene that had been de-aerated with nitrogen. The slurry was then thoroughly de-aerated with nitrogen and subsequently stirred at 70 OC for 2 h. The coated silica was then collected by filtration and washed three times in 50 ml methanol, and air dried. Finally, the silica was heated at 120 OC for two hours to cure the coating and yiele g of coated silica. The silica contained the folj. .ttached groups: CH CH CH 3 H OC 2

H

H H H/ (SILICA)-C-NH-C- C-N-CHHz-N-CH-!ZH2-C-N-C-C-N-CH'HI2 Hz-CH II 11 I I I 0 H 3 C O 0 HC O OC2H

(IV)

1.5 g of the coated silica beads were shaken with 20 ml aqueous HCl (pH 3.0) for 4 h at room temperature. The course of the reaction was followed by testing for the generation of free aldehyde with ammoniacal silver nitrate (Tollens test). The resulting solid was collected on a Buechner filter, then reslurried and recollected until the wash water was neutral. The silica particles were then air dried to yield 1.25 g of aldehyde packing, the terminal methoxy groups having been replaced with a single aldehyde group as follows:

CH

3

CH

3 CH3 I H I H H

(SICA)-C-NH--C-N-CHH

2 -N-CHatH2-C-N-C-C-N-CHHfH 2

-CHO

II I II II I II 0 H 3 C 0 0 H 3 C O SUBSTITUTE

SHEET

WO 94/00509 PCT/US93/06240 110 Repligen Protein A was coupled to the aldehyde packing using the standard conditions given for the attachment of Bovine Serum Albumin in the accompanying instructions (Technical Note No. 4151) from Chromatochem Inc., Missoula, MT.

A one-cm glass column was packed with the Protein-A functionalized material and loaded with human IgG from PBS buffer (pH 7.4) at a flow rate of 1.6 ml/min. The IgG was eluted in 0.01M NaOAc (pH The IgG was then collected and the amount measured spectrophotometrically using standard calibration curves.

The measured capacity of the packing was 12 mg IgG per ml of column volume.

22. Example: Functionalization of Azlactone-Containinq Polymers It is possible to procure existing azlactonefunctionalized polymeric surfaces as described in U.S. Patent No. 4,737,560) and to functionalize them according to the steps outlined above. For example, by using successive reactions with dinucleophilic species of the form HNu'-Z-Nu 2 H and suitable azlactones, a surface of the form (SURFACE)-(X)-Az, where X is a linker and Az stands for axlactone, can be transformed into the species WO 94/00509 PCT/US93/06240 111 (SURFACE) -CONHC (CH 3 2 CONu' Nu 2

CHCH

2 -Az which may be linked, if desired, to a biomolecule to form the following conjugate:

(SURFACE)

-CONHC (CH 3 2 CONu' Nu 2

CHCH

2 CONHC (CH 3 2 CO-Biomolecule A suitable experimental procedure is as follows. The azlactone-functional support is slurried in a suitable solvent, such as CHC13, and cooled to 0 OC. An amount of the biftinctional nucleophile equivalent on a molar basis to the total number of surface azlactone groups present, is dissolved in the same solvent and added with shaking. The mixture is then shaken at 0 °C for 6 hours, allowed to come to room temperature, and shaken at room temperature overnight. The support is collected by filtration, washed with fresh solvent, reslurried in an appropriate solvent and one equivalent of vinylazlactone, dissolved in the same solvent, is added thereto. The mixture is then shaken, heated to 70 OC and held at this temperature for 12 hours. At the end of this time, the mixture is cooled and the support collected by filtration. The support is then washed thoroughly with fresh solvent and dried in vacuo.

23. Example: Preparation of a Support Useful in the Purification of Human IqG from Serum The functional beads prepared as above are suspended in pH 7.5 aqueous phosphate buffer. A solution of protein A (Repligen) in 10 mM phosphate buffer (pH and at a concentration of 10 mg/900 Al is added, and the mixture is then gently shaken at room temperature for 3 hours. The beads are concentrated by centrifugation, the supernate decanted off and the beads washed five times with pH 7.5 aqueous phosphate buffer. The beads are then loaded into a 0.46 inner-diameter glass are then loaded into a 0.46 cm inner-diameter glass

I

WO 94/00509 PCT/US93/06240 112 column and used to purify human IgG from serum using standard affinity-purification techniques.

It should be apparent to those skilled in the art that other compositions and processes for preparing the compositions not specifically disclosed in the instant specification are, nevertheless, contemplated thereby. Such other compositions and processes are considered to be within the scope and spirit of the present invention, hence, the invention should not be limited by the description of the specific embodiments disclosed herein but only by the following claims.

Claims (19)

1. A compound having the structure; A-X- -NH--CO-Q- -YB R' 'ri wherein: a. A and B are the same or different, and each is a chemical bond; hydrogen; an electrophilic group; a nucleophilic group; R; an amino acid derivative; a nucleotide derivative; a carbohydrate derivative; an organic struotuaral motif; a reporter element; an organic moiety containing a polymerizable group; or a macromolecular component, wherein A and B are optionally connected to each other or to other structures and R is as defined below; b. X and Y are the same or different and each represents a chemical bond or one or more atoms of carbon, nitrogen, sulfur, oxygen or combinations thereof; c. R and R' are the same or different and each is 25 an alkyl, cycloalkyl, aryl, aralkyl or alkaryl groulp or a substituted or heterocyclic derivative thereof, wherein R and R' may be different in adjacent n units and have a selected stereochemical arrangement about the carbon atom to which they are attached; 30 d. G is a connecting group or a chemical bond which may be different in adjacent n units; and e. n 1; *y 1 provided that, if i is and X and Y are chemical bonds, A and B are different and one is other than a chemical bond, H 35 or R, and A and B each is other than an amino acid residue or a peptide; if nr is 1 and Y is a chemical bond, G includes S an NH., OH or SH terminal group for connection to the carbonyl V^ -1 Lb -114- group and G-B is not an amino acid residue or a peptide; (3) if n is I and X, Y, and G each is a chemical bond, A and B each is other than a chemical bond, an amino acid residue or a peptide; if n is 1, either X or A includes a CO group for direct connection to the NH group; if n is k 1, then X-A do not together form a para-alkenyl substitu d benzoyl group; and if n 1, then at least one of A, B, X, Y, AX, BY or G is not an amino acid group or a chemical bond. io 2. The compound of claim I wherein G is a chemical bond or the ring-opening reaction product of a nucleophilic group and an oxazolone and n 2.

3. The compound of claim I wherein at least one of R and R' includes a hydroxyl containing substituent.

4. The compound oi claim I wherein X i a carbonyl group.

5. The compound of claim 1 wherein G includes a NH2, OH or SH terminal group for connection to the carbonyl group.

6. The compound of claim 1 wherein G i8 a chemical bond and Y is a compound which includes a NH,, OH or SH terminal group.

7. The compound of clain 1 wherein G is a chemical bond, Y is an oxygen atom, B is a hydrogen and n 2. 30 8. The compound of claim I wherein G includes at least one of an aromatic ring, a heterocyclic ring, a carbocyclic moiety, an alkyl group or a substituted derivative thereof.

9. The compound of claim 1 wherein A and B are the .35 same. -115- The compound of claim 1 where R and R' are different so that the compound is chiral.

11. and B is The compound of claim 1 wherein at least one of a terminal-structural moiety of formula 2-U, wherein: a, is selected from the group consisting of aliphatic chains having from 2 to 6 catron atoms, substituted or unsubstituted aryl, substituted or unsubstituted cycloalkyl, and substituted or unsubstituted beterocyclic rings; and b. T is selected from the group consisting of OH, NH2, SH, (CH,)N COO-, CH3, H, and phenyl. The compound of claim 11 wherein at least and B is H0-CH 2 -(CHOH), where n is an integer. The compound of claim 1 wherein A and B are part of cyclic moiety. The compound of claim 1 wherein n is 1 and G a NH, OH or SH terminal group for connection to the group.

12. one of A

13. the same 444 o 4 4 444 4 4 44 .4 4.

14. includes 25 carbonryl

15. The compound of matter of claim 14 wherein G is a group containing the atom of the nucleophile used in the ring- opening reaction of an oxazolone.

16. The compound of claim 14 whe.ein R and R' are different so that the compound chiral.

17. The compound of claim 1 wherein R and R' are different, X is a chemical bond and A is nUcleotide derivative; a carbohydrate derivative; an organic structural \Q1 -116- motif; a reporter element; an organic moiety containing a polymerizable group; or a macromolecular component.

18. The compound of claim 1 wherein G is NuI-Y-P where Ni' is a nucleophilic group, Y Ss as defined above and P is r -q.ic!ve group optionally containing a protective group; f an a-a-di-substituted amino acid residue. The compound of claim 19 wherein P is a nucleophilic group optionally containing a protective group. I The compound of claim 1 in the form of a peptide mimetic wherein at least one of A and B is an amino acid derivative of the form where AA is a natural or synthetic amino acid residue and m is an integer greater than or equal to one; a nucleotide mimetic wherein at least one of A and B is P nucleotide derivative of the form (NUCL)I, wherein 1 is an integer greater than or equal to one, such that (NUCL), is a natural or synthetic nucleotide when 1-1, a nucleotide probe when 1=2-2F and an oligonucleotide when 1>25 including both deoxyribose (DNA) and ribose (RNA) variants; a carbohydrate mimetic wherein at least one of A and B is a natural carbohydrate, a synthetic carbohydrate residue or derivative thereof or a related organic acid thereof; a pharmaceutical compound wherein at Least one of A and B is an organic structural motif of the organic compound which is obtained from a pharmaceutical compound, a pharmacopnore or 30 metabolite thereof and has specific binding properties to ligands; a reporter compound wherein at least one of A and B is a reporter element of a natural or synthetic dye or a photographically active residues which possesses reactive S• 35 groups of an amino, thio, hydroxy, carboxylic acid, acid chloride, isocyanate alkyl halide, aryl halide or an oxirane group, which may be synthetically incorporated into the -117- oxazolone structure or reaction scheme and may be attached through the groups without adversely interfering with the reporting functionality of the group; a polymerizable compound wherein at least one of A and B is an organic moiety containing a polymerizable group of a vinyl group, oxirane group, carboxylic acid, 2cid chloride, ester, amide, lactone or lactam; or a substrate wherein at least one of A and B is a macromolecular component of a surface or structures which is attached to the oxazolone module via a reactive group in a manner where the binding of the attached species to a ligand- rereptor molecule is not adversely affected and the interactive activity of the attached functionality is determined or limited by the macromolecule, said macromolecule component having a molecular weight of at least about 1000 Daltons or being in the form of an ceramic particle, a nanoparticle, a latex particle, a porous or non-porous beads, a membrane, a gel, a macroscopic surface or a functionalized or coated version or composite thereof.

21. A compound having the structure: A N 25 CHI)q wherein: 30 a. A is a chemical bond; hydrogen; an electrophilic group; a nucleophilic group; R; an amino acid derivative; a nucleotide derivative; a carbohydrate 600"4: derivative; an organic structural motif; a reporter element; an organic moiety containing a polymerizable group; or a macromolecular component, wherein R is as defined below; b. Y is a chemical bond or one or more atoms of carbon, nitrogen, sulfur, oxygen or combinations thereof; c. R and R t are the same or different and each is an alkyl, cycloalkyl, aryl, aralkyl or alkaryl group or a substituted or heterocyclic derivative thereof, wherein R and R' may be different and have a selected stereochemical arrangement about the carbon atom to which they are attached; d. q 0 or 1; and e. wherein if q is 11, A-Y do not together form a para-alkenyl substituted group; when n is 1, R and R' do not together form a double bond to a single carbon atom which is bonded to a disubstftuted phenyl ring.

22. The compound of claim 21 wherein Y includes at least one nucleophilic species which includes a nitrogen, oxygen or sulfur group attached to a -(CH 2 group where n is 1-2, and R and R' are the sane or different and each is hydrogen, or an alkyl, cycloalkyl, aryl, ar~lkyl or alkaryl group, or a carbocyclic or heterocyclic ring.

23. The compound of claim 22 wherein Y is a chemical bond and q 0 or Y is; (RING) (Cu') 25 where n=0-4 and (RING) designates a disubetituted phenyl ring or a substituted or unsubstituted aromatic, heterocyclic or alicyclic ring having 6-20 carbons, wherein A is a protecting group when Y contains a terminus which can react with the oxazolone ring. t DATED: '3 December 1996 PHILLIPS ORMONDE FITZPATRICK "Attorneys for: LEGOMER PARTNERS, L.P. 3* 4* 9 .4 *4 4 INTERNATIONAL SEARCH REPORT intc.itationAl applIcutlon No. PCT/US93106240 A. CLASSIFICATION OF SUBJECT MATITE R :C08G 69/10; C07D 263100; C07C 229/00 US CL :523/328; 5481215; 562/433, 575 According to International Patent Classification (IPC) or to both national classification and [PC B. FIELDS SEARCHED Minimum documentation searched (classification system followed by classification symbols) U.S. :5281328; 548/215; 562/433, 575 Documentation searched other than minimumn documentation to the extent that such documents amc included in the fields searched Electronic data base consulted during the int. rntional search (name of data base and, where practicable, searh terms used) C. DOCUM[ENTS CONSIDERED TO BE RELEVANT Category* Citation of document, with indication, where appropriate, of the relevant passges Relevant to claim No. X US, A, 5,039,813 (FAZIO ET AL.) 13 AUGUST 199 1. See 1, 2, 5, 6, 8-10, column 4, lines 1-64; column 13, line 29 to column 14, line 14-16, 19,

36. 36-38 PX US, A, 5,219,731 (SlH) 15 JUNE 1993. See column 4, line 1, 4-6, 9, 54 to column 5, line 33; column 6, lines 1-8. 14-16, 19, X US, A, 4,612,388 (MITA ET AL.) 16 SEPTEMBER 1986. 1, 3-10, 14-16, See column 2, lines 30-50. 19, X US, A, 4,125,519 (GOODMAN ET AL.) 14 NOVEMBER 1-6, 8-10, 19, 19'78. See column 2, lines 36-56. X US, A, 4,996,292 (FOX ET AL.) 26 FEBRUARY 1991. See 1-6, 8-10, 19, the Abstract. E Further documents are listed in the continuation of Box C. 1 See patent faumily annex. Special categories of Chaed do..aaccza: "T kwa doctamentpuhbshe after the hizerabioal filing date or priority date and aem conflict with the application but cited to tmdetn te doctmaitdcing thegwauL asleof the iiwhkhis -mdWerd at6*1 Ofw e uderlying thG inveion to be pan of paicukar relevance *E e~tirdpbtW oe taier he X docuent of particular relevance, the claimed ivention camot be .V ar~t dcuentpubishd n o afertheintrnmow fiingdat cnsiere ve rcaanotbe consderedto involveRn inventiveaq V document whic may throw doubts oepnz chma rWlch is dbom the dcutment 6a taken aloe scile so (as thecpicdOcdtofmee tazcato document of pazLculr r evac the clakffec invention cannot be specil evaoc (m apeeiat)considered nvlv an ivenive when the doasnent im document referring to an oral disclosure, uwe. exhibition at odbet combined wit oa at mate odber such docummo". PA*k combinstice memo being obvioust a' eso killed in the ant .r docuen pubtishl prior to the intexuational filing dote but law~ (gi documntmember of t sme paten family the priori.y date caie Date of the actual completion of thie international search Date of nziling of the international search report 24 SEPTEMBER 1993 NOV 12 1993 Name and mailing address of the ISA/US Authorized officer Commissioner of Patents and Trademarks 7-9 Washington, D.C. 20231 JFRYM LI Facsimile No. NOT APPLICABLE Telephone No. (703) 308-235/7 Formi PCT/ISAI210 (second sheet)(iuly 1992)* INTERNATIONAL SEARCH REPORT iternational application No. PCT/US93/06240 Box I Observations where certain claims were found unsearchable (Continuation of item 1 of first sheet) This international report has not been established in respect of certain claims under Article 17(2)(a) for the following reasons: 1. -c Claims Nos.: because they relate to subject matter not required to be searched by this Authority, namely: 2. Claims Nos.: 48-54 Sbecause they relate to parts of the international application that do not comply with the prescribed requirements to such an extent that no meaningful international search can be carried out, specifically: Claim 48 recites that steps and should be repeated but does not recite what steps and are. 3. Claims Nos.: because they are dependent claims and are not drafted in accordance with the second and third sentences of Rule 6.4(a). Box II Observations where unity of invention is lacking (Continuation of item 2 of first sheet) This International Searching Authority found multiple inventions in this international application, as follows: Please See Extra Sheet. 1. F As all required additional search fees were timely paid by the applicant, this international search report covers all searchable claims. 2. O As all searchable claims could b. searched without effort justifying an additional fee, this Authority did not invite payment of any additional fee. 3. E As only some of the required additional search fees were timely paid by the applicant, this international search report covers only those claims for which fees were paid, specifically claims Nos.: 4. No required additional search fees were timely paid by the applicant. Consequently, this international search report is restricted to the invention first mentioned in the claims; it is covered by claims Nos.: 1-6, 8-10, 13-16, 19, 20, 36-38 Remark on Protest The additional search fees were accompanied by the applicant's protest. SNo protest accompanied the payment of additional search fees. Form PCT/ISA/210 (continuation of first shect(l))(July 1992)* I INTERNATIONAL SEARCH REPORT [Inmational application No. I'CTIUS93/06240 BOX II. OBSERVATIONS WHERE UNITY OF INVENTION WAS LACKING This ISA found multiple inventions as follows: 1. This International Search Authority has found 121 inventions claimed in the International Application covered by the claim indicated below The generic claims contain the followinig patontably distinct species of units A and B. Species of A and B 1) a chemical bond 2) hydrogen 3) an electrophilic group 4) R an amino acid derivative 6) a carbohydrate derivative 7) an organic structural motif 8) a reporter element 9) an organic moiety containing polymerizable group a macromoleculai component 11) a nucleophifle group The various combinations of A and B makes a total of 121 combinations. I~ Form PCT/ISA/210 (extra sheet)(July 1992)* M