AU2009295899A1 - Protease inhibitors - Google Patents

Description

WO 2010/034789 PCT/EP2009/062407 1 Protease Inhibitors Field of the invention This invention relates to inhibitors of cysteine proteases, especially those of the papain superfamily. The invention provides novel compounds useful in the prophylaxis or treatment of 5 disorders stemming from misbalance of physiological proteases such as cathepsin K. Description of the related art The papain superfamily of cysteine proteases is widely distributed in diverse species including mammals, invertebrates, protozoa, plants and bacteria. A number of mammalian cathepsin enzymes, including cathepsins B, F, H, K, L, 0 and S, have been ascribed to this superfamily, 10 and inappropriate regulation of their activity has been implicated in a number of metabolic disorders including arthritis, muscular dystrophy, inflammation, glomerulonephritis and tumour invasion. Pathogenic cathepsin like enzymes include the bacterial gingipains, the malarial falcipains 1, 11, 111 et seq and cysteine proteases from Pneumocystis carinfi, Trypanosoma cruzei and brucei, Crithidia fusiculata, Schistosoma spp. 15 The inappropriate regulation of cathepsin K has been implicated in a number of disorders including osteoporosis, gingival diseases such as gingivitis and periodontitis, Paget's disease, hypercalcaemia of malignancy and metabolic bone disease. In view of its elevated levels in chondroclasts of osteoarthritic synovium, cathepsin K is implicated in diseases characterised by excessive cartilage or matrix degradation, such as osteoarthritis and rheumatoid arthritis. 20 It is likely that treatment of bone and cartilage disorders such as osteoarthritis and osteoporosis will require life-long administration of a cathepsin K inhibitor, often to a patient population within or nearing the geriatric phase. This places unusually high requirements on the ease of administration of drugs intended for such disorders. For example attempts are underway to stretch the dosage regimes of the current osteoporosis drugs of the 25 bisphosphonate class to weekly or longer administration regimes to aid compliance. However, even with improved dosing, other side effects of the bisphosphonates remain. Bisphosphonates block bone turnover rather than attenuate it as a cathepsin K inhibitor does. For healthy bone it is important to maintain the remodelling process which bisphosphonates block completely. In addition, bis-phosphonates have a very long half-life in bone so if effects 30 such as osteonecrosis of the jaw manifest themselves, it is impossible to remove the bisphosphonate from the bone. In contrast, cathepsin K inhibitors typically have a fast onset and off rate mode of action, which means that if a problem was to be identified, dosing could be halted and there would be no build up of the inhibitor in the bone matrix.

WO 2010/034789 PCT/EP2009/062407 2 There is thus a desire for alternative osteoporosis and osteoarthritis drugs with superior pharmacokinetic and/or pharmacodynamic properties. International patent application no W02008/007107 discloses compounds of the formula Ra Rb 0 Rc 0 Rd N H; o O 5 where Rd is a substituted monocyclic ring, Rc is branched alkyl or cycloalkyl and Ra and Rb are a variety of groups including H, methyl, ethyl, ether, thioether, amine, sulphonate etc. The only compounds which are prepared have H or methoxy at this position. There remains a need in the art for potent inhibitors of cathepsin K. Of particular benefit are inhibitors of cathepsin K which show selectivity for cathepsin K over other cathepsins (e.g. 10 selectivity over cathepsin S and/or cathepsin L). Potent inhibitors of cathepsin K which demonstrate properties such as high permeability and/or advantageous metabolic profiles may be expected to be of great value in a clinical setting. Cathepsin K related indications such as osteoporosis or arthritis presuppose protracted periods of administration and therefore it is desirable that the compounds have minimal toxicity or genotoxicity. 15 Brief description of the invention According to the present invention, there is provided a compound of formula 1l: N H o R3 A 2 N N A EH (R4) wherein

R

3 is C1C3 alkyl or C3-C6 cycloalkyl, either of which is optionally substituted with one or 20 two methyl and/or a fluoro, trifluoromethyl or methoxy, when R 3 is C3-C6 cycloalkyl it may alternatively be gem subsituted with fluoro;

R

4 is methyl or fluoro; m is 0, 1 or 2; WO 2010/034789 PCT/EP2009/062407 3 E is a bond, or thiazolyl, optionally substituted with methyl or fluoro;

A

1 is CH or N,

A

2 is CR 6

R

7 or NR , provided at least one of A 1 and A 2 comprises N;

R

6 is H, C1-C4 alkyl, C1-C4 haloalkyl, C1-C3 alkyl-O-C1-C 3 alkyl, or when A 2 is C, R 6 can 5 also be C 1

-C

4 alkoxy or F;

R

7 is H, C1-C4 alkyl or F or a pharmaceutically acceptable salt, N-oxide or hydrate thereof. It will be appreciated that the compounds of the invention can exist as hydrates, such as those of the partial formulae: N N HH H NN H H 10 0 HO OH and the invention extends to all such alternative forms. Suitably R 3 is C1-C3 alkyl or C3-C6 cycloalkyl, either of which is optionally substituted with one or two methyl and/or a fluoro, trifluoromethyl or methoxy. Representative values for cycloalkyl for R 3 include cyclopropyl, cyclobutyl and especially 15 cyclopentyl or cyclohexyl, any of which being substitued with fluoro or gem fluoro. Gem-fluoro at the 2 position of a cyclopropyl, the 3 position of cyclobutyl or cyclopentyl or the 4 position of cyclopropyl is often convenient. Gem-fluoro at the 4 position of cyclohexyl is also often convenient. In one embodiment of the invention R 3 represents the side chain of leucine. In a second 20 embodiment of the invention R 3 represents the side chain of isoleucine. In a third embodiment of the invention R 3 represents the side chain of cyclohexylglycine. In a fourth embodiment of the invention R 3 represents the side chain of cyclopentylglycine. In a fifth embodiment of the invention, R 3 represents the side chain of of O-methylthreonine. In a fifth embodiment of the invention R 3 represents the side chain of 4-fluoroleucine. In a sixth embodiment of the 25 invention R 3 represents the side chain of 3-methoxyvaline. Currently preferred values of R 3 include those embodied by the partial structures: WO 2010/034789 PCT/EP2009/062407 4 and especially In one embodiment of the invention m represents 2. Of particular interest are compounds wherein m represents 1. Still further embodiments of the invention have m as 0, especially when the adjacent thiazolyl is substituted with Me or preferably F. 5 R 4 suitably represents methyl or fluoro, especially fluoro. If m is 2, it is currently preferred that each R 4 is the same. When m represents 1, R 4 is suitably positioned as shown by the partial structure: 0 N H R4 E is conveniently a bond, that is the unsaturated nitrogen containing ring bearing Al and A2 is 10 bonded directly to the para position of the phenyl ring. However, it is currently preferred that E is thiazolyl, which is optionally substituted with methyl or more preferably fluoro. The preferred orientation of the thiazolyl ring is:

A

2 A N S / (R4) R5 where R 5 is H, methyl or fluoro. 15 The ring containing A 1 and A 2 is a saturated, nitrogen-containing ring of 5 or 6 ring atoms. Thus n is 0 or 1 and suitably n is 1. Representative rings thus include pyrrolidin-1-yl, pyrrolidin-3-yl, piperazin-1-yl, piperidin-4-yl and piperidine-1-yl. The ring is conveniently substituted, for example with alkyl or haloalkyl, typically methyl or propyl or trifluromethyl. Alternatively the ring is substituted with an ether such as methoxymethyl- or methoxyethyl-.

WO 2010/034789 PCT/EP2009/062407 5 When A 2 is carbon, the ring can alternatively be substitued with alkoxy such as methoxy, or fluoro, especially gem-fluoro. A favoured embodiment of the invention has the formula Ila: N H 0 R3 N H H -- \ N 0 0 11a R6-N N / (R 4 )m S R5 5 wherein

R

3 is branched C2-C6 alkyl or C3-C6 cycloalkyl, either of which is substituted with halo or trifluoromethyl;

R

4 is methyl or fluoro; m is 0 or 1 or 2;

R

5 is H, methyl or fluoro; 10 R 6 is C1C4 alkyl; or a pharmaceutically acceptable salt, N-oxide or hydrate thereof (collectively referred to herein as compounds of the invention).

R

5 is preferably fluoro, especially when m is 0. The remaining preferments are as defined above in relation to Formula 1l. References to formula Il below are understood to include the 15 corresponding embodiments of formula Ila. Representative embodiments of formula II include: N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-carbonyl)-3-methyl-butyl]-4-[2-(4 methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-yl)-1 -cyclohexyl-2-oxo-ethyl]-4-[2-(4 20 methyl-piperazin-1-yl)-thiazol-4-yl]-benzamide; N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-yl)-1 -cyclopentyl-2-oxo-ethyl]-4-[2-(4 methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-carbonyl)-2-methyl-butyl]-4-[2-(4 methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; 25 N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-carbonyl)-3-methyl-butyl]-4-[5 methyl-2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; WO 2010/034789 PCT/EP2009/062407 6 N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-yl)-1 -cyclohexyl-2-oxo-ethyl]-4-[5 methyl-2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-yl)-1 -cyclohexyl-2-oxo-ethyl]-4-[5 methyl-2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; 5 N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-carbonyl)-2-methyl-butyl]-4-5-methyl 2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-carbonyl)-3-methyl-butyl]-4-[5-fluoro 2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-yl)-1 -cyclohexyl-2-oxo-ethyl]-4-[5 10 fluoro-2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-yl)-1 -cyclopentyl-2-oxo-ethyl]-4-[5 fluoro-2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-carbonyl)-2-methyl-butyl]-4-[5-fluoro 2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; 15 N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-carbonyl)-3-methyl-butyl]-3-fluoro-4 [2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-yl)-1 -cyclohexyl-2-oxo-ethyl]-3 fluoro-4-[2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-yl)-1 -cyclopentyl-2-oxo-ethyl]-3 20 fluoro-4-[2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide; N-[1 -(6-nitrile-3-oxo-hexahydro-furo[3,2-b]pyrrol-4-carbonyl)-2-methyl-butyl]-3-fluoro-4 [2-(4-methyl-piperazin-1 -yl)-thiazol-4-yl]-benzamide and pharmaceutically acceptable salts, N-oxides and hydrates thereof. The C1-Cn alkyl definition of R 6 or R 7 is is meant to include both branched and unbranched 25 alkyl moieties containing between one and n carbon atoms in total. Examples of such R 6 groups or R are methyl, ethyl, propyl (n-propyl and isopropyl), butyl (n-butyl, isobutyl, tert-butyl and sec-butyl). One R 6 group of particular interest is methyl. A second R 6 group of particular interest is propyl (especially n-propyl). As R 3 is optionally substituted with one or two methyl groups, this moiety may also define a branched alkyl chain of up to 5 C atoms. 30 In some embodiments of the invention A 1 is N. Additional aspects of the invention include a pharmaceutical composition comprising a compound as defined above and a pharmaceutically acceptable carrier or diluent therefor. A further aspect of the invention is the use of a compound as defined above in the manufacture of a medicament for the treatment of disorders mediated by cathepsin K, such as: WO 2010/034789 PCT/EP2009/062407 7 osteoporosis, gingival diseases (such as gingivitis and periodontitis), Paget's disease, hypercalcaemia of malignancy, 5 metabolic bone disease, diseases characterised by excessive cartilage or matrix degradation (such as osteoarthritis and rheumatoid arthritis), bone cancers including neoplasia, pain (especially chronic pain). 10 Additionally provided is a method for the treatment or prevention of a disorder mediated by cathepsin K comprising the administration of a safe and effective amount of a compound of the invention for the purpose of treating or preventing said disorder which is mediated by cathepsin K. Also provided is a compound of the invention for the treatment or prevention of a disorder 15 mediated by cathepsin K. Further, there is provided as an aspect of the invention novel intermediates (as described herein) which may be of use in the preparation of the compounds of the invention. In particular there is provided a compound of the formula: N O N 5OMe I H OMe H 20 or an N-protected derivative thereof (e.g. Boc, CBz, or Fmoc-protected). Also provided by the invention is the corresponding 1,3-dioxolane protected analogue and N-protected derivatives thereof (e.g. Boc- CBz, or Fmoc protected). A further novel intermediate of the invention is has the formula: Ozz H - O e N OMe | H OMe H 25 or the corresponding 1,3-dioxolane protected analogue, in each case wherein the N function is optionally protected with a conventional protecting group such as Boc, CBz or Fmoc.

WO 2010/034789 PCT/EP2009/062407 8 The compounds of the invention can form salts which form an additional aspect of the invention. Appropriate pharmaceutically acceptable salts of the compounds of Formula II include salts of organic acids, especially carboxylic acids, including but not limited to acetate, trifluoroacetate, lactate, gluconate, citrate, tartrate, maleate, malate, pantothenate, isethionate, 5 adipate, alginate, aspartate, benzoate, butyrate, digluconate, cyclopentanate, glucoheptanate, glycerophosphate, oxalate, heptanoate, hexanoate, fumarate, nicotinate, palmoate, pectinate, 3-phenylpropionate, picrate, pivalate, proprionate, tartrate, lactobionate, pivolate, camphorate, undecanoate and succinate, organic sulphonic acids such as methanesulphonate, ethanesulphonate, 2-hydroxyethane sulphonate, camphorsulphonate, 2 10 napthalenesulphonate, benzenesulphonate, p-chlorobenzenesulphonate and p toluenesulphonate; and inorganic acids such as hydrochloride, hydrobromide, hydroiodide, sulphate, bisulphate, hemisulphate, thiocyanate, persulphate, phosphoric and sulphonic acids. The compounds of the invention may in some cases be isolated as the hydrate. Hydrates are typically prepared by recrystallisation from an aqueous/organic solvent mixture using organic 15 solvents such as dioxin, tetrahydrofuran or methanol. Hydrates can also be generated in situ by administration of the corresponding ketone to a patient. The N-oxides of compounds of the invention can be prepared by methods known to those of ordinary skill in the art. For example, N-oxides can be prepared by treating an unoxidized form of the compound of the invention with an oxidizing agent (e.g., trifluoroperacetic acid, 20 permaleic acid, perbenzoic acid, peracetic acid, meta-chloroperoxybenzoic acid, or the like) in a suitable inert organic solvent (e.g., a halogenated hydrocarbon such as dichloromethane) at approximately OC. Alternatively, the N-oxides of the compounds of the invention can be prepared from the N-oxide of an appropriate starting material. Examples of N-oxides of the invention include those with the partial structures: 0 0 N O N R4'N N H R4N N H / N IN S R3 S R3 25 R5 R5 Compounds of the invention in unoxidized form can be prepared from N-oxides of the corresponding compounds of the invention by treating with a reducing agent (e.g., sulfur, sulfur dioxide, triphenyl phosphine, lithium borohydride, sodium borohydride, phosphorus bichloride, WO 2010/034789 PCT/EP2009/062407 9 tribromide, or the like) in an suitable inert organic solvent (e.g., acetonitrile, ethanol, aqueous dioxane, or the like) at 0 to 800C. It should be noted that the radical positions on any molecular moiety used in the definitions may be anywhere on such moiety as long as it is chemically stable. 5 Radicals used in the definitions of the variables include all possible isomers unless otherwise indicated. For instance butyl includes t-butyl, i-butyl, n-butyl etc. When any variable occurs more than one time in any constituent, each definition is independent. Unless otherwise mentioned or indicated, the chemical designation of a compound 10 encompasses the mixture of all possible stereochemically isomeric forms, which said compound may possess. Said mixture may contain all diastereomers and/or enantiomers of the basic molecular structure of said compound. All stereochemically isomeric forms of the compounds of the present invention both in pure form or mixed with each other are intended to be embraced within the scope of the present invention. 15 Pure stereoisomeric forms of the compounds and intermediates as mentioned herein are defined as isomers substantially free of other enantiomeric or diastereomeric forms of the same basic molecular structure of said compounds or intermediates. In particular, the term "stereoisomerically pure" concerns compounds or intermediates having a stereoisomeric excess of at least 80% (i.e. minimum 90% of one isomer and maximum 10% of the other 20 possible isomers) up to a stereoisomeric excess of 100% (i.e. 100% of one isomer and none of the other), more in particular, compounds or intermediates having a stereoisomeric excess of 90% up to 100%, even more in particular having a stereoisomeric excess of 94% up to 100% and most in particular having a stereoisomeric excess of 97% up to 100%. The terms "enantiomerically pure" and "diastereomerically pure" should be understood in a similar way, 25 but then having regard to the enantiomeric excess, and the diastereomeric excess, respectively, of the mixture in question. Compounds of the invention can be prepared as their individual stereoisomers by reacting a racemic mixture of the compound with an optically active resolving agent to form a pair of diastereoisomeric compounds, separating the diastereomers and recovering the optically pure 30 enantiomer. While resolution of enantiomers can be carried out using covalent diasteromeric derivatives of compounds of Formula 1l, dissociable complexes are preferred (e.g., crystalline; diastereoisomeric salts). Diastereomers have distinct physical properties (e.g., melting points, boiling points, solubilities, reactivity, etc.) and can be readily separated by taking advantage of WO 2010/034789 PCT/EP2009/062407 10 these dissimilarities. The diastereomers can be separated by chromatography, for example HPLC or, preferably, by separation/resolution techniques based upon differences in solubility. The optically pure enantiomer is then recovered, along with the resolving agent, by any practical means that would not result in racemization. A more detailed description of the 5 techniques applicable to the resolution of stereoisomers of compounds from their racemic mixture can be found in Jean Jacques Andre Collet, Samuel H. Wilen, Enantiomers, Racemates and Resolutions, John Wiley & Sons, Inc. (1981). The compounds of formula II or any subgroup of formula || as defined herein include radioisotopes or radiomarked compounds, wherein one or more of the atoms is replaced by an 10 isotope of that atom, i.e. an atom having the same atomic number as, but an atomic mass different from, the one(s) typically found in nature. Examples of isotopes that may be incorporated into the compounds of formula I or any subgroup of formula I, include but are not limited to isotopes of hydrogen, such as 2 H and 3 H (also denoted D for deuterium and T for tritium respectively), carbon, such as 11C, 13C and 14C, nitrogen, such as 13 N and 15 N, oxygen, 15 such as 150, 170 and ", phosphorus, such as 3 1 P and 32 P, sulphur, such as 35S, fluorine, such as " 1 F, chlorine, such as 36C, bromine such as 75 Br, 76 Br, 7 7 Br and 8 2 Br, and iodine, such as 1231, 1241, 1251 and 1311. The choice of isotope included in an isotope-labelled compound will depend on the specific application of that compound. For example, for drug or substrate tissue distribution assays, 20 compounds wherein a radioactive isotope such as 3 H or 14C is incorporated will generally be most useful. For radio-imaging applications, for example positron emission tomography (PET) a positron emitting isotope such as 11C, "F, 13 N or 150 will be useful. The incorporation of a heavier isotope, such as deuterium, i.e. 2 H, may provide greater metabolic stability to a compound of formula I or any subgroup of formula I, which may result in, for example, an 25 increased in vivo half life of the compound or reduced dosage requirements. For synthetic convenience it will generally be preferred that the compounds of formula || are in the natural isotopic state. Isotopically labelled compounds of formula I or any subgroup of formula || can be prepared by processes analogous to those described in the Schemes and/or Examples herein below by 30 using the appropriate isotopically labelled reagent or starting material instead of the corresponding non-isotopically labelled reagent or starting material, or by conventional techniques known to those skilled in the art. It will be appreciated that the invention extends to prodrugs, solvates, complexes and other forms releasing a compound of the invention in vivo.

WO 2010/034789 PCT/EP2009/062407 11 While it is possible for the active agent to be administered alone, it is preferable to present it as part of a pharmaceutical formulation. Such a formulation will comprise the above defined active agent together with one or more acceptable carriers/excipients and optionally other therapeutic ingredients. The carrier(s) must be acceptable in the sense of being compatible with the other 5 ingredients of the formulation and not deleterious to the recipient. The formulations include those suitable for rectal, nasal, topical (including buccal and sublingual), vaginal or parenteral (including subcutaneous, intramuscular, intravenous and intradermal) administration, but preferably the formulation is an orally administered formulation. The formulations may conveniently be presented in unit dosage form, e.g. tablets and 10 sustained release capsules, and may be prepared by any methods well known in the art of pharmacy. Such methods include the step of bringing into association the above defined active agent with the carrier. In general, the formulations are prepared by uniformly and intimately bringing into association the active agent with liquid carriers or finely divided solid carriers or both, and then 15 if necessary shaping the product. The invention extends to methods for preparing a pharmaceutical composition comprising bringing a compound of Formula II or its pharmaceutically acceptable salt in conjunction or association with a pharmaceutically acceptable carrier or vehicle. If the manufacture of pharmaceutical formulations involves intimate mixing of pharmaceutical excipients and the active ingredient in salt form, then it is 20 often preferred to use excipients which are non-basic in nature, i.e. either acidic or neutral. Formulations for oral administration in the present invention may be presented as discrete units such as capsules, cachets or tablets each containing a predetermined amount of the active agent; as a powder or granules; as a solution or a suspension of the active agent in an aqueous liquid or a non-aqueous liquid; or as an oil-in-water liquid emulsion or a water in oil 25 liquid emulsion and as a bolus etc. With regard to compositions for oral administration (e.g. tablets and capsules), the term suitable carrier includes vehicles such as common excipients e.g. binding agents, for example syrup, acacia, gelatin, sorbitol, tragacanth, polyvinylpyrrolidone (Povidone), methylcellulose, ethylcellulose, sodium carboxymethylcellulose, hydroxypropyl-methylcellulose, sucrose and 30 starch; fillers and carriers, for example corn starch, gelatin, lactose, sucrose, microcrystalline cellulose, kaolin, mannitol, dicalcium phosphate, sodium chloride and alginic acid; and lubricants such as magnesium stearate, sodium stearate and other metallic stearates, glycerol stearate stearic acid, silicone fluid, talc waxes, oils and colloidal silica. Flavouring agents such as peppermint, oil of wintergreen, cherry flavouring or the like can also be used. It may be WO 2010/034789 PCT/EP2009/062407 12 desirable to add a colouring agent to make the dosage form readily identifiable. Tablets may also be coated by methods well known in the art. A tablet may be made by compression or moulding, optionally with one or more accessory ingredients. Compressed tablets may be prepared by compressing in a suitable machine the 5 active agent in a free flowing form such as a powder or granules, optionally mixed with a binder, lubricant, inert diluent, preservative, surface-active or dispersing agent. Moulded tablets may be made by moulding in a suitable machine a mixture of the powdered compound moistened with an inert liquid diluent. The tablets may be optionally be coated or scored and may be formulated so as to provide slow or controlled release of the active agent. 10 Other formulations suitable for oral administration include lozenges comprising the active agent in a flavoured base, usually sucrose and acacia or tragacanth; pastilles comprising the active agent in an inert base such as gelatin and glycerin, or sucrose and acacia; and mouthwashes comprising the active agent in a suitable liquid carrier. The appropriate dosage for the compounds or formulations of the invention will depend upon 15 the indication and the patient and is readily determined by conventional animal trials. Dosages providing intracellular (for inhibition of physiological proteases of the papain superamily) concentrations of the order 0.01-100 uM, more preferably 0.01-10 uM, such as 0.1-25 uM are typically desirable and achievable. Compounds of the invention are prepared by a variety of solution and solid phase chemistries. 20 The compounds are typically prepared as building blocks reflecting the P1, P2 and P3 moieties of the end product inhibitor. Without in any way wishing to be bound by theory, or the ascription of tentative binding modes for specific variables, the notional concepts P1, P2 and P3 as used herein are provided for convenience only and have substantially their conventional Schlecter & Berger meanings and denote those portions of the inhibitor believed to fill the S1, 25 S2, and S3 subsites respectively of the enzyme, where S1 is adjacent the cleavage site and S3 remote from the cleavage site. Compounds defined by Formula || are intended to be within the scope of the invention, regardless of binding mode. Broadly speaking the P1 building block will have the formula: WO 2010/034789 PCT/EP2009/062407 13 N N PG'N or PG' Rb' Rb Rc wherein

R

1 and R 2 are as defined above, the two Rb groups define a ketal, such as the bis methyl ketal or together define a cyclic ketal such as 1,3-dioxolane; 5 and Rc is an hydroxy protecting group. Less commonly Rc is H or represents the keto function of the end-product inhibitor in cases where the P1 building block as the ketone is elongated with P2 and P3. W005/066180 describes the preparation of intermediates towards the above P1 building blocks, including: HO 0 BnO 10 6 The first stage in the synthesis of compounds of the invention is typically the preparation in solution of a functionalized P1 building block. Scheme 1 illustrates a route to a convenient 6 aldehyde intermediate.

WO 2010/034789 PCT/EP2009/062407 14 HO H! O H O H HOH0 O e iii, ivO e N.~ OMe N OH N OMe I H OMe H Me boc a lb OH 0 H HO OH V, Vi vii viii H OMe | H OMe NHOM boc boc boc 1d le if i) Dess-Martin Periodinane, DCM; ii) Trimethylorthoformate, pTs, MeOH; iii) Pd(OH) 2 , H 2 , MeOH; iv) Boc 2 0, 10 % Na 2 C0 3 , v) Dess-Martin Periodinane, DCM; vi) 1) CH 3 PPh 3 Br, KOtBu, THF; vii) 1) 9-BBN-H, THF, 2) NaBO 3 , H20, THF; viii) Dess-Martin Periodinane, DCM. Scheme 1 The starting bicyclic alcohol (1a) can be prepared as described in WO05/066180. Oxidation of 5 the hydroxy function for example with Dess-Martin periodinane followed by transformation of the afforded keto function into a dimethyl ketal effected by treatment with trimethyl orthoformate in the presence of an acid like p-toluenesulphonic acid provides the ketal (1 b). Removal of the Cbz and benzyl protecting groups effected for instance by hydrogenolysis using a catalyst like Pd(OH) 2 or the like, followed by boc protection of the afforded free amine 10 provides the alcohol (1 c). Oxidation of the afforded free alcohol using for instance Dess-Martin periodinane in a solvent like dichloromethane followed by a Wittig reaction using methyl triphenylphosphinium bromide in the presence of KOt.Bu or the like provides the olefin (1 d). Hydroxylation of the double bond effected for example by treatment with 9-BBN-H, provides the primary alcohol (1e) which subsequently can be oxidized to the corresponding aldehyde 15 (1f) using any suitable oxidation method such as treatment with Dess-Martin periodinane or the like. Scheme 2 illustrates a typical procedure for a 6-nitrile P1 building block commencing from the 6-aldehyde intermediate of Scheme 1. 20 WO 2010/034789 PCT/EP2009/062407 15 0HO' N HH H -0 N H 0 0 0 if 1g ih i: NH 2 OH.HCI, NaOAc ii: Tf 2 0, Et 3 N Conversion of the aldehyde 1f (Scheme 2) to the corresponding desired nitrile 1 h (Scheme 2) proceeds via dehydration of oxime 1 g (Scheme 2). Hence the aldehyde in an ethanol/water mixture can be treated with NH 2 OH and sodium acetate, for example overnight at room 5 temperature. TLC can be used to monitor that the starting material had been consumed. Conventional work-up provides the crude oxime 1g (E and Z isomers) used without further purification. The crude oxime 1g may be taken up in dichloromethane and triethylamine added at -78 IC. Trifluoromethanesulfonic anhydride in an organic solvent such as dichloromethane can be added, typically while allowing the reaction to warm up to room temperature. Once the 10 reaction appears to be complete, extraction and chromatography of the residue, for example on silica gel affords a typical nitrile building block 1 h, generally in good yield. Typically only one isomer of the nitrile 1 h, eg that with C-6S stereochemistry is isolated as the reaction usually proceeds without loss of stereochemical integrity. Numerous examples in the literature show this conversion from an aldehyde to the corresponding nitrile to proceed with a similar retention 15 of stereochemistry eg. Hutt et al, Journal of Organic Chemistry, 72(26), 10130, 2007. Typically to get to the final compound, the P1 building block such as 1h above is N deprotected in a conventional fashion, such as treatment with acetyl chloride in methanol to remove an N-Boc protecting group. With the subsequent free amine, the P2 residue is introduced, eg via BocP2-OH using standard coupling conditions such as HATU, DIPEA in 20 DMF. The terminal Boc protection is again removed with acetyl chloride in methanol and the P3 residue introduced via P3-OH using standard coupling conditions such as HATU, DIPEA in DMF. Finally the dimethylketal protection is removed with TFA to afford the required final compound. Elongation is typically carried out in the presence of a suitable coupling agent e.g., 25 benzotriazole-1-yloxytrispyrrolidinophosphonium hexafluorophosphate (PyBOP), 0 benzotriazol-1-yl-N,N,N',N'-tetramethyl-uronium hexafluorophosphate (HBTU), 0-(7 azabenzotriazol-1-yl)-1,1,3,3-tetramethyl-uronium hexafluorophosphate (HATU), 1-(3- WO 2010/034789 PCT/EP2009/062407 16 dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (EDC), or 1,3-dicyclohexyl carbodiimide (DCC), optionally in the presence of I-hydroxybenzotriazole (HOBT), and a base such as N,N-diisopropylethylamine, triethylamine, N-methylmorpholine, and the like. The reaction is typically carried out at 20 to 30 'C, preferably at about 25 OC, and requires 2 to 24 h 5 to complete. Suitable reaction solvents are inert organic solvents such as halogenated organic solvents (e.g., methylene chloride, chloroform, and the like), acetonitrile, N,N dimethylformamide, ethereal solvents such as tetrahydrofuran, dioxane, and the like. Alternatively, the above elongation coupling step can be carried out by first converting the P3/P2 building block into an active acid derivative such as succinimide ester and then reacting 10 it with the P1 amine. The reaction typically requires 2 to 3 h to complete. The conditions utilized in this reaction depend on the nature of the active acid derivative. For example, if it is an acid chloride derivative, the reaction is carried out in the presence of a suitable base (e.g. triethylamine, diisopropylethylamine, pyridine, and the like). Suitable reaction solvents are polar organic solvents such as acetonitrile, N,N-dimethylformamide, dichloromethane, or any 15 suitable mixtures thereof. The P2 building block is typically an N-protected amino acid such as L-leucine, L-isoleucine, 0-methyl-L-threonine, L-3-hydroxyvaline, 4-fluoroleucine, L- cyclopentylglycine or L cyclohexylglycine, and P3 typically comprises a capping group such as a benzoic acid derivative with, eg, the N-alkyl-piperazinyl-E moiety already introduced or provided with a 20 synthon therefor in the para position. The suitably protected individual building blocks can first be prepared and subsequently coupled together, preferably in the sequence P2+P1-> P2-P1 followed by N-alkylpiperazinyl-E benzoic acid*+P2-P1-> N-alkylpiperazinyl-E-benzoate-P2-P1, where * denotes an activated form, in order to minimise racemisation at P2. 25 Coupling between two amino acids, an amino acid and a peptide, or two peptide fragments can be carried out using standard coupling procedures such as the azide method, mixed carbonic-carboxylic acid anhydride (isobutyl chloroformate) method, carbodiimide (dicyclohexylcarbodiimide, diisopropylcarbodiimide, or water-soluble carbodiimide) method, active ester (p-nitrophenyl ester, N-hydroxysuccinic imido ester) method, Woodward reagent 30 K-method, carbonyldiimidazole method, phosphorus reagents or oxidation-reduction methods. Some of these methods (especially the carbodiimide method) can be enhanced by adding 1 hydroxybenzotriazole or 4-DMAP. These coupling reactions can be performed in either solution (liquid phase) or solid phase.

WO 2010/034789 PCT/EP2009/062407 17 More explicitly, the coupling step involves the dehydrative coupling of a free carboxyl of one reactant with the free amino group of the other reactant in the present of a coupling agent to form a linking amide bond. Descriptions of such coupling agents are found in general textbooks on peptide chemistry, for example, M. Bodanszky, "Peptide Chemistry", 2nd rev ed., 5 Springer-Verlag, Berlin, Germany, (1993) hereafter simply referred to as Bodanszky, the contents of which are hereby incorporated by reference. Examples of suitable coupling agents are N,N'-dicyclohexylcarbodiimide, 1-hydroxybenzotriazole in the presence of N,N' dicyclohexylcarbodiimide or N-ethyl-N'-[ (3-dimethylamino) propyl] carbodiimide. A practical and useful coupling agent is the commercially available (benzotriazol-1-yloxy)tris 10 (dimethylamino) phosphonium hexafluorophosphate, either by itself or in the present of 1 hydroxybenzotriazole or 4-DMAP. Another practical and useful coupling agent is commercially available 2-(IH-benzotriazol-1-yl)-N,N,N',N'-tetramethyluronium tetrafluoroborate. Still another practical and useful coupling agent is commercially available O-(7-azabenzotriazol-1-yl) N,N,N',N'-tetramethyluronium hexafluorophosphate. 15 The coupling reaction is conducted in an inert solvent, e. g. dichloromethane, acetonitrile or dimethylformamide. An excess of a tertiary amine, e. g. diisopropylethylamine, N methylmorpholine, N-methylpyrrolidine or 4-DMAP is added to maintain the reaction mixture at a pH of about 8. The reaction temperature usually ranges between 0 'C and 50 'C and the reaction time usually ranges between 15 min and 24 h. 20 The functional groups of the constituent non-natural amino acids generally must be protected during the coupling reactions to avoid formation of undesired bonds. The protecting groups that can be used are listed in Greene, "Protective Groups in Organic Chemistry", John Wiley & Sons, New York (1981) and "The Peptides: Analysis, Synthesis, Biology", Vol. 3, Academic Press, New York (1981), hereafter referred to simply as Greene, the disclosures of which are 25 hereby incorporated by reference. The alpha-carboxyl group of the C-terminal residue is usually protected as an ester that can be cleaved to give the carboxylic acid. Protecting groups that can be used include 1) alkyl esters such as methyl, trimethylsilyl and t-butyl, 2) aralkyl esters such as benzyl and substituted benzyl, or 3) esters that can be cleaved by mild base or mild reductive means such as 30 trichloroethyl and phenacyl esters. The alpha-amino group of each amino acid to be coupled is typically N- protected. Any protecting group known in the art can be used. Examples of such groups include: 1) acyl groups such as formyl, trifluoroacetyl, phthalyl, and p-toluenesulfonyl; 2) aromatic carbamate groups such as benzyloxycarbonyl (Cbz or Z) and substituted benzyloxycarbonyls, and 9- WO 2010/034789 PCT/EP2009/062407 18 fluorenylmethyloxycarbonyl (Fmoc); 3) aliphatic carbamate groups such as tertbutyloxycarbonyl (Boc), ethoxycarbonyl, diisopropylmethoxy-carbonyl, and allyloxycarbonyl; 4) cyclic alkyl carbamate groups such as cyclopentyloxycarbonyl and adamantyloxycarbonyl; 5) alkyl groups such as triphenylmethyl and benzyl; 6) trialkylsilyl such as trimethylsilyl; and 7) 5 thiol containing groups such as phenylthiocarbonyl and dithiasuccinoyl. The preferred alpha amino protecting group is either Boc or Fmoc. Many amino acid derivatives suitably protected for peptide synthesis are commercially available. The alpha-amino protecting group is typically cleaved prior to the next coupling step. When the Boc group is used, the methods of choice are trifluoroacetic acid, neat or in dichloromethane, 10 or HCI in dioxane or in ethyl acetate. The resulting ammonium salt is then neutralized either prior to the coupling or in situ with basic solutions such as aqueous buffers, or tertiary amines in dichloromethane or acetonitrile or dimethylformamide. When the Fmoc group is used, the reagents of choice are piperidine or substituted piperidine in dimethylformamide, but any secondary amine can be used. The deprotection is carried out at a temperature between 0 'C 15 and room temperature usually 20-22 'C. Once the inhibitor sequence is completed any remaining protecting groups are removed in whatever manner is dictated by the choice of protecting groups. These procedures are well known to those skilled in the art. P2 building blocks in the form of N-protected L-amino acids are readily available commercially, 20 for example L-leucine, L-isoleucine, L-cyclohexylglycine, O-methyl-L threonine and others are available commercially with a number of protecting group variants such as CBz, Boc or Fmoc. Other variants of R 3 are easily prepared from commercially available starting materials. For example compounds wherein R 3 is -C(CH 3

)

2 0CH 3 can be prepared by reacting CBz protected (S)-(+)-2-amino-3-hydroxy-3-methylbutanoic acid with 3,3-dimethoxy-hexahydro 25 furo(3,2b)pyrrole to form the desired P2-P1 unit. The P2 side chain alcohol can now be methylated using methyliodide under conventional sodium hydride, imidazole, THF conditions to obtain the desired P2 without substantial racemisation of the alpha centre. This P2-P1 moiety can now be carried through the synthesis as described herein, namely CBz removal and coupling. 30 W005/565299 describes the preparation of a gamma-fluoroleucine P2 building block. An alternative synthsis of Fmoc and N-Boc-gammafluoroleucine building blocks is shown in Truong et al Syn. Lett. 2005 no 8 1278-1280.

WO 2010/034789 PCT/EP2009/062407 19 The preparation of P3 building blocks are described in WO05/066180, W008/007114 or readily prepared by analogous methods. For example, Scheme E below shows the preparation of a P3 building block wherein E is a fluoro-substituted thiazolyl: 0 0 0 IBr _ F

H

3 CO H 3 CO Br H 3 COF 0 0 0 F F F N N N- v />HON V N

H

3 00 ,r Br iv H 3 00 I-:: V- HO0 0 0 0 5 i. HOAc, Br 2 , RT, 2h, 55% yield; ii. KF, 18-crown-6, CH 3 CN, 90 0C, 16 h, 31% yield; iii. HOAc, Br 2 , 45 C, 4 h, 100% yield ; iv. 4-methylpiperazine-1-carbothioamide, ethanol, 70 0C, 2 h, 74% yield, v. LiOH, THF, H 2 0, RT, 16 h, 79 % yield. Scheme E Synthesis of 4-[5-fluoro-2-(4-methyl-piperazin-1-yl)-thiazol-4-yl]-benzoic acid 10 The starting material, methyl 4-acetylbenzoate, is commercially available. Bromination at the a position to the ketone is achieved with bromine in acetic acid to provide the desired 4-(2 bromo-acetyl)-benzoic acid methyl ester. Subsequent treatment of 4-(2-bromo-acetyl)-benzoic acid methyl ester with potassium fluoride in the presence of 18-crown-6 at 90 C, provides 4 (2-fluoro-acetyl)-benzoic acid methyl ester after column chromatography. Repeated 15 bromination at the a-position to the ketone is achieved with bromine in acetic acid to provide the desired 4-(2-bromo-2-fluoro-acetyl)-benzoic acid methyl ester. Formation of the thiazole is typically carried out by heating 4-(2-bromo-2-fluoro-acetyl)-benzoic acid methyl ester with 4 methylpiperazine-1 -carbothioamide at 700 C for 2 hours. On cooling, the desired 4-[5-fluoro-2 (4-methyl-piperazin-1-yl)-thiazol-4-yl]-benzoic acid methyl ester precipitates out. Deprotection 20 of the methyl ester is carried out using a lithium hydroxide solution and the desired acid, 4-[5 fluoro-2-(4-methyl-piperazin-1-yl)-thiazol-4-yl]-benzoic acid is generally obtained in good yield as the dihydrochloride salt on workup with hydrochloric acid. The term "N-protecting group" or "N-protected" as used herein refers to those groups intended to protect the N-terminus of an amino acid or peptide or to protect an amino group against 25 undesirable reactions during synthetic procedures. Commonly used N-protecting groups are disclosed in Greene, "Protective Groups in Organic Synthesis" (John Wiley & Sons, New York, 1981), which is hereby incorporated by reference. N-protecting groups include acyl groups WO 2010/034789 PCT/EP2009/062407 20 such as formyl, acetyl, propionyl, pivaloyl, t-butylacetyl, 2-chloroacetyl, 2-bromoacetyl, trifluoracetyl, trichloroacetyl, phthalyl, o-nitrophenoxyacetyl, a-chlorobutyryl, benzoyl, 4 chlorobenzoyl, 4-bromobenzoyl, 4-nitrobenzoyl, and the like; sulfonyl groups such as benzenesulfonyl, p-toluenesulfonyl, and the like, carbamate forming groups such as 5 benzyloxycarbonyl, p-chlorobenzyloxycarbonyl, p-methoxybenzyloxycarbonyl, p-nitrobenzyloxycarbonyl, 2-nitrobenzyloxycarbonyl, p-bromobenzyloxycarbonyl, 3,4-dimethoxybenzyloxycarbonyl, 4-methoxybenzyloxycarbonyl, 2-nitro-4,5-dimethoxybenzyloxycarbonyl, 3,4,5-trimethoxybenzyloxycarbonyl, 1-(p-biphenylyl)-1-methylethoxycarbonyl, a,a-dimethyl-3,5-dimethoxybenzyloxycarbonyl, 10 benzhydryloxycarbonyl, t-butoxycarbonyl, diisopropylmethoxycarbonyl, isopropyloxycarbonyl, ethoxycarbonyl, methoxycarbonyl, allyloxycarbonyl, 2,2,2-trichloroethoxycarbonyl, phenoxycarbonyl, 4-nitrophenoxycarbonyl, fluorenyl-9-methoxycarbonyl, cyclopentyloxycarbonyl, adamantyloxycarbonyl, cyclohexyloxycarbonyl, phenylthiocarbonyl, and the like; alkyl groups such as benzyl, triphenylmethyl, benzyloxymethyl and the like; and 15 silyl groups such as trimethylsilyl and the like. Favoured N-protecting groups include formyl, acetyl, benzoyl, pivaloyl, t-butylacetyl, phenylsulfonyl, benzyl (bz), t-butoxycarbonyl (BOC) and benzyloxycarbonyl (Cbz). Hydroxy and/or carboxy protecting groups are also extensively reviewed in Greene ibid and include ethers such as methyl, substituted methyl ethers such as methoxymethyl, 20 methylthiomethyl, benzyloxymethyl, t-butoxymethyl, 2-methoxyethoxymethyl and the like, silyl ethers such as trimethylsilyl (TMS), t-butyldimethylsilyl (TBDMS) tribenzylsilyl, triphenylsilyl, t butyldiphenylsilyl triisopropyl silyl and the like, substituted ethyl ethers such as 1-ethoxymethyl, 1-methyl-1-methoxyethyl, t-butyl, allyl, benzyl, p-methoxybenzyl, dipehenylmethyl, triphenylmethyl and the like, aralkyl groups such as trityl, and pixyl (9-hydroxy-9 25 phenylxanthene derivatives, especially the chloride). Ester hydroxy protecting groups include esters such as formate, benzylformate, chloroacetate, methoxyacetate, phenoxyacetate, pivaloate, adamantoate, mesitoate, benzoate and the like. Carbonate hydroxy protecting groups include methyl vinyl, allyl, cinnamyl, benzyl and the like. Detailed Description of the Embodiments 30 Various embodiments of the invention will now be described by way of illustration only with reference to the following Examples. Reference Example 1 A P3 building block WO 2010/034789 PCT/EP2009/062407 21 Step a)4-Cyanopropiophenone S/ CN 0 As described for the preparation of 4-cyanoacetophenone (Synth. Commun 1994, 887-890), a mixture of 4-bromopropiophenone (5.65 g, 26.4 mmol), Zn(CN) 2 (1.80 g, 15.3 mmol), and 5 Pd(PPh 3

)

4 (2.95 g, 2.6 mmol) was refluxed at 80 0C in deoxygenated DMF (35 mL, stored over 4 A molecular sieves, bubbled with Ar before use) for 18 h. The mixture was partitioned between toluene (100 mL) and 2N NH 4 0H (100 mL). The organic phase was extracted with 2N

NH

4 0H (100 mL), washed with saturated aqueous NaCl (2 x 100 mL), dried, and evaporated. A 10 mmol scale reaction was done similarly and the crude products were combined. Flash 10 chromatography (330 g silica, 6/1 petroleum ether - EtOAc) gave white solids (5.17 g, 89%). 1H NMR (CDC13) 6 ppm: 1.22 (t, 3H, J = 7.2 Hz), 3.00 (q, 2H, J = 7.3 Hz), 7.75 (d, 2H, J = 8.8 Hz), 8.03 (d, 2H, J = 8.4 Hz) 13C NMR (CDC13) 6 ppm: 7.8, 32.1, 116.1, 117.9, 128.3, 132.4, 139.7, 199.2 step b) 4-Propionylbenzoic acid - /aCOOH 15 0 4-Cyanopropiophenone (4.67 g, 29.3 mmol) was refluxed with 2N NaOH (90 mL, 180 mmol) and dioxane (90 mL) at 95 0C overnight. The mixture was diluted with water (150 mL), washed with ether (75 mL), acidified to pH 2 with concentrated HCI, and extracted with ether (3 x 75 mL). The organic phase was washed with saturated aqueous NaCl (3 x 75 mL), dried, and 20 evaporated to give yellow solids (5.12 g, 98%). 1H NMR (CDC13+ CD30D) 6 ppm: 1.18 (t, 3H, J = 7.2 Hz), 2.99, (q, 2H, J = 7.1 Hz), 7.95 (d, 2H, J = 8.4 Hz), 8.08 (d, 2H, J = 8.8 Hz) 13C NMR (CDC13) 6 ppm: 7.9, 32.1, 127.7, 130.0, 134.0, 140.0, 168.0, 200.8 Step c)Methyl 4-propionylbenzoate - /aCOOMe 25 0 WO 2010/034789 PCT/EP2009/062407 22 The benzoic acid above (890 mg, 5 mmol), NaHCO 3 (1.26 g, 15 mmol) and iodomethane (935 piL, 15 mmol) in DMF (10 mL) were stirred at RT overnight. The mixture was diluted with saturated aqueous NaCl (50 mL) and extracted with ether (3 x 50 mL). The organic phase was washed with water (50 mL), dried, and evaporated. Flash chromatography (90 g silica, 2/1 5 petroleum ether - EtOAc) gave white solids (744 mg, 77%). 1 H NMR (CDC13) 6 ppm: 1.24 (t, 3H, J = 7 Hz), 3.03 (q, 2H, J = 7 Hz), 3.95 (s, 3H), 8.0 and 8.12 (ABq, 4H) Step d) Methyl 4-(2-bromopropionyl)benzoate Br B / COOMe 0 10 Methyl 4-propionylbenzoate (744 mg, 3.87 mmol), pyrrolidone hydrotribromide (1.98 g), and 2 pyrrolidinone (380 mg, 4.5 mmol) in THF (38 mL) were heated at 50 0C under nitrogen for 3 h. The mixture was cooled, filtered, concentrated, and then redissolved in ether (50 mL). The ether solution was washed successively with water (20 mL), saturated aqueous Na 2

S

2 0 5 (20 mL), saturated aqueous NaCl (20 mL), and water (20mL), dried and evaporated to give a 15 yellow oil (1.025 g) that was used directly in the Hantzsch coupling. This material contained 91% of the desired bromoketone, 5% starting ketone, and 4% 4-bromo-1-butanol, as determined by 1H NMR. 1 H NMR (CDC13) 6 ppm: 1.92 (d, 3H, J = 7 Hz), 3.96 (s, 3H), 5.28 (q, 1 H, J = 7 Hz), 8.07 and 8.14 (ABq, 4H) 20 Step e)4-[2-(4-tert-Butoxycarbonylpiperazin-1 -yl)-5-methylthiazol-4-yllbenzoic acid methyl ester BocN N-4. \ _ N COOMe All of the a-bromoketone above and 4-thionocarbonylpiperazine-1-carboxylic acid tert-butyl ester (J. Med. Chem., 1998, 5037-5054, 917 mg, 3.73 mmol) were refluxed in 36 mL THF at 25 70 0C for 2 h, under N 2 . The precipitate was filtered and the filtrate evaporated to give yellow solids. Flash column chromatography (silica, 5/1 petroleum ether - EtOAc) gave 624 mg of WO 2010/034789 PCT/EP2009/062407 23 light yellow solids. Chromatography of the precicpitate (silica, 2/1 petroleum ether - EtOAc) gave 32 mg more of compound. Total yield is 44%. 1 H NMR (CDC13) 6 ppm: 1.46 (s, 9H), 2.43 (s, 3H), 3.42, (m, 4H), 3.54 (m, 4H), 3.90 (s, 3H), 7.68 and 8.04 (ABq, 4H). 5 Step f) 4-[2-(4-tert-Butoxycarbonylpiperazin-1-vl)-5-methylthiazol-4-vllbenzoic acid BocN N \_ / N COOH The above methyl ester (564 mg, 1.35 mmol) was heated with 1.35 mL 2N NaOH, 5 mL THF, and 3.65 mL water at 60 0C for 4 h. The reaction mixture was evaporated, poured into 20 mL saturated aqueous NaCl and 20 mL CH 2

CI

2 , and then acidified to pH 3 with 5% citric acid, in 10 an ice bath. The layers were separated and the organic phase was extracted further with 2 x 10 mL CH 2

CI

2 . The organic phases were combined, washed with water (10 mL), dried, and evaporated to give light yellow solids (537 mg, 98%). 1H NMR (CDC13) 6 ppm: 1.48 (s, 9H), 2.47 (s, 3H), 3.47 (m, 4H), 3.57 (m, 4H), 7.74 and 8.12 (ABq, 4H). 15 13C NMR (CDC13) 6 ppm: 12.6, 28.3, 42.8, 48.1, 80.3, 119.1, 127.8, 128.2, 130.1, 140.5, 145.6, 154.6, 167.2, 171.4. LCMS: (M + H)* 404, (M - H)- 402. Step q)4-[5-methyl-2-(4-methyl-piperazin-1-Vl)-thiazol-4-Vllbenzoic acid -N N \__/ N COOH 20 4-[4-(4-Carboxy-phenyl)-5-methyl-thiazol-2-yl]-piperazine-1 -carboxylic acid tert-butyl ester (0.421 mmol) was dissolved in 4M HCI in 1,4-dioxane, and stirred at room temperature for 1 h. The solvent was then removed under vacuum, and the residue 4-(5 methyl-2-piperazin-1-yl-thiazol-4-yl)-benzoic acid was suspended in methanol (10 ml) and treated with AcOH/AcONa buffer (pH -5.5, 5 ml), and formaldehyde (0.547 mmol). The 25 reaction mixture was stirred at room temperature for 1 h, then treated with NaCNBH 3 (0.547 mmol) and stirred at room temperature overnight. The solvent was then removed under WO 2010/034789 PCT/EP2009/062407 24 vacuum, and the residue was purified by column chromatography to afford the title compound (0.403 mmol, 95%). MS(ES) m/z 318 (100%, [M+H]*). Reference Example 2 5 An alternative P3 building block 3-Fluoro- 4-[2-(4-methylpiperazin-1 -Vl)-thiazol-4-Vllbenzoic acid H CI salt

TMSCHN

2 Zn, Ac2O, TFA MeOH-PhMe 0 allyl CI, CoBr 2 0 0 Br OH 0 deg tort Br OMe MeCOMe WO95% WO 36% W~ F F F -N --\ N-<S O -N Nd CNf] HBr 3 \-- NH 2 0 0 O EtOH, 70 0 C N N OMe S Br - OMe a N 2-pyrrolidinone F 72% over 2 steps THF, 60-65 OC F F 0 6M HCI CI N OH quant ---N N F s F Step a)Methyl 4-bromo-3-fluorobenzoate 10 4-Bromo-3-fluorobenzoic acid (2.46 g, 11.2 mmol) was dissolved in MeOH (9 mL) and toluene (4 mL) and cooled in an ice bath. (Trimethylsilyl)diazomethane (11 mL, 2.0 M in hexanes, 22 mmol) was added dropwise until the yellow color persisted. The solution was stirred at room temperature for 40 mins and then concentrated in vacuo. A second batch of carboxylic acid (2.43 g) was treated similarly. The crude product from both batches were combined and 15 subjected to flash chromatography (silica, 5/1 pentane - EtOAc) to give the methyl ester as white solids (4.92 g, 95% yield). 1 H NMR (400 MHz, CDC13) delta ppm 7.77 (m, 1H), 7.71 (m, 1H), 7.64 (m, 1H), 3.93 (s, 3H). Step b)Methyl 4-acetoxy-3-fluorobenzoate WO 2010/034789 PCT/EP2009/062407 25 Allyl chloride (105 pL, 1.28 mmol) and TFA (20 pL, 0.26 mmol) were added to a suspension of zinc dust (480 mg, 7.34 mmol) and anhydrous cobalt(II) bromide (96.6 mg, 0.44 mmol) in MeCN (4 mL), under inert gas. After stirring at room temperature for 10 min, the aryl bromide (1.003 g, 4.30 mmol dissolved in 5 mL MeCN) from (a) was added, followed by acetic 5 anhydride (0.45 mL, 4.79 mmol) and more MeCN (1 mL). The mixture was stirred overnight, quenched with 1 M HCI (20 mL), and then extracted with EtOAc (3 x 20 mL). The organic phase was washed successively with saturated aqueous NaHCO 3 (20 mL) and saturated NaCl (2 x 20 mL), dried (Na 2 SO4), and concentrated. Flash chromatography (silica, 6/1 to 4/1 petroleum ether - EtOAc gave recovered bromide (161.1 mg, 16%) and the desired ketone 10 (white solids, 305.5 mg, 36%). NMR (CDC13) 6 ppm: 1 H (400 MHz) 7.94-7.86 (m, 2H), 7.80 (dd, 1H, J = 11.2, 1.6 Hz), 3.95 (s, 3H), 2.67 (d, 3H, J = 4.4 Hz); 1 9 F (376 MHz) -109.2 (m); 13C (100 MHz) 195.4 (d , J = 3.7 Hz), 165.1 (d, J = 2.2 Hz), 161.6 (d, J = 255 Hz), 135.8 (d, J = 8.1 Hz), 130.7 (d, J = 2.9 Hz), 129.0 ( d, J = 14 Hz), 125.2 (d, J = 3.6 Hz), 117.9 (d, J = 26 Hz), 52.7 (s), 31.4 (d, J = 7.3 Hz). 15 Step c)Methyl 4-(2-bromoacetoxy)-3-fluorobenzoate THF (10 mL) and 2-pyrrolidinone (91 pL, 1.20 mmol) were added to a mixture of the ketone from b) (198 mg, 1.01 mmol) and pyrrolidone hydrotribromide (532 mg, 1.07 mmol). After heating at 60-65 0C for 2 h, the mixture was concentrated under vacuum and then partitioned between EtOAc (20 mL) and saturated Na 2

S

2 0 3 (10 mL). The aqueous phase was extracted 20 with EtOAc (10 mL). The organic phases were combined, washed with saturated NaCl (2 x 10 mL), dried (Na 2 SO4), and concentrated. Flash chromatography (silica, 7/1 petroleum ether EtOAc) gave white solids (0.2634 g) containing 84% of the desired bromide (as determined by integration of 1 9 F NMR peaks). NMR (CDC13) 6 ppm: 1 H (400 MHz) 7.93 (m, 1H), 7.88 (m, 1H), 7.79 (dd, 1H, J = 11.2,1.6 Hz), 25 4.50 (d, 2H, J = 2.4 Hz), 3.94 (s, 3H); 1 9 F (376 MHz) -108.4 (m). Step d)Methyl 3-fluoro- 4-[2-(4-methylpiperazin-1-yl)-thiazol-4-yllbenzoate EtOH (5.0 mL) was added to the bromoketone above (193 mg, 0.70 mmol) and 4-methyl piperazine-1-carbothioic acid amide (113 mg, 0.71 mmol) and the mixture was heated at 70 0C for 2h 15 min. The precipitates were filtered, washed with cold EtOH, and dried under vacuum 30 and characterized. The procedure was repeated in a larger scale for 1.75 g bromoketone (6.36 mmol).

WO 2010/034789 PCT/EP2009/062407 26 NMR (1/1 CDC13- CD30D)5 ppm: 1 H (400 MHz) 8.20 (m, 1H), 7.86 (dd, 1H, J = 8.4, 1.6 Hz), 7.76 (dd, 1 H, J = 11.4, 1.8 Hz), 7.38 (d, 1 H, J = 2.4 Hz), 4.23 (br, 2H), 3.95, (s, 3H), 3.65 ( br, 4H), 3.32 (br, 2H), 2.98 (s, 3H); 1 9 F (376 MHz) -114.0 (m). LCMS [M+H]* = 336. The precipitates from both preparations were combined and suspended in saturated NaHCO 3 5 (50 mL). The mixture was extracted with EtOAc. The organic phase was washed with water, dried (Na 2 SO4), and evaporated to give the title compound as cream solids (1.76 g). Step e)3-fluoro- 4-[2-(4-methylpiperazin-1-yl)-thiazol-4-Vllbenzoic acid HCI salt The methyl ester (1.76 g, 5.25 mmol) from (d) was heated at 80 0C with 6M HCI (40 mL) for 5.5 h. More 6M HCI (10 mL) was added and the mixture was heated at 90 C for 1h 15 min. After 10 cooling, the mixture was then evaporated under vacuum and freeze-dried from water to give the final product as cream solids in quantitative yield. NMR (DMSO-d6) 6 ppm: 1 H (400 MHz) 11.60 (br, 1 H), 8.18 (t, 1 H, J = 8.0 Hz), 7.82 (dd, 1 H, J = 8.4, 1.6 Hz), 7.72 (dd, 1 H, J = 12.0, 1.6 Hz), 7.48 (d, 1 H, J = 2.8 Hz), 4.11 (m, 2H), 3.58 (m, 2H), 3.49 (m, 2H), 3.19 (m, 2H), 2.80 (d, 3H, J = 4.4 Hz); 1 9 F (376 MHz) -113.5 (m); 13C (100 15 MHz) 168.9, 166.0, 159.0 (d, J = 250 Hz), 143.4, 131.4 (d, J = 8 Hz), 129.8, 125.8 (d, J = 11 Hz), 125.6, 116.6 (d, J = 24 Hz), 111.1 (J = 15 Hz), 51.1, 45.0, 41.9. LCMS [M+H]* = 322. Reference Example 3 6-aldehyde- intermediate 0 O H -aO N 0 OH 20 6-Formyl-3,3-dimethoxy-hexahydro-furo[3,2-b~pVrrole-4-carboxVlic acid tert-butyl ester Step a 0 H O N 0 Y H

O

WO 2010/034789 PCT/EP2009/062407 27 (3as, 6aS)-6R-benzyloxy-3-oxo-hexahydro-furo[3,2-blpvrrole-4-carboxylic acid benzyl ester Dess-Martin reagent (12.5 g, 30 mmol) was dissolved in DCM (250 mL). 6-Benzyloxy-3 hydroxy-hexahydro-furo[3,2-b]pyrrole-4-carboxylic acid benzyl ester (prepared as described in 5 W005/066180) (7.4 g, 20 mmol) in DCM (50 mL) was added to a stirred solution of oxidant at rt under a nitrogen atmosphere over 45 min. After an additional 90 min stirring the reaction was deemed to be complete by TLC. Aqueous 10% Na 2

S

2 0 3 (200 mL) was added and the mixture was stirred at rt for another 15 minutes. The two phase system was transferred into a separation funnel and extracted twice with EtOAc (200 mL and 100 mL respectively). The 10 combined organic phases were washed once with aqueous saturated NaHCO 3 (100 mL) and brine (100 mL), dried over Na 2

SO

4 , filtered and the solvent removed in vacuo, yielding the crude product title compound as a clear oil (7.69 g,); ESI+, m/z: 368 (M+ +1). Step b 0 H O N 0 0 15 -0 0 (3aS,6aS)-6R-benzyloxy-3,3-dimethoxy-hexahydro-furo[3,2-bpVrrole-4-carboxVlic acid benzyl ester The keto derivative of step a) (7.6 g) was dissolved in dry methanol (100 mL). Trimethyl orthoformate (30 mL) and pTsOH (0.2 g) was added at rt under a nitrogen atmosphere. The 20 mixture was heated at 60 'C for 8 hours. When the reaction was deemed to have reached completion according to TLC, it was cooled to rt and concentrated in vacuo. The crude product was purified by column chromatography over silica gel eluting with ethyl acetate-heptane (1:4) which gave the title compound as a clear oil (5.9 g, 71 % over 2 steps); ESI+, m/z: 382 (M+ OMe). 25 WO 2010/034789 PCT/EP2009/062407 28 Step c HO H -O N 0 H H 0__ (3aS,6aS)-3,3-dimethoxy-hexahydro-furo[3,2-b1 pyrrol-6 R-ol A solution of the compound of step b) (2.5 g, 6.4 mmol) in methanol (60 mL) and Pd(OH) 2 (0.7 5 g) was stirred at rt under H 2 atmosphere for 48 hours. When the reaction was deemed to have reached completion according to TLC, the mixture was filtered and concentrated in vacuo to yield the crude title compound as a brownish oil (1.15 g); ESI+, m/z: 190 (M+ +1). Step d HO H

-

O N Z: 0_\H 0 10 O (3aS, 6aS)-6R-hydroxy-3,3-dimethoxy-hexahydro-furo[3,2-blpvrrole-4-carboxylic acid tert-butyl ester 3,3-Dimethoxy-hexahydro-furo[3,2-b] pyrrol-6-ol from step c) (2.80 g, 14.8 mmol) was 15 dissolved in 75 mL of a mixture of dioxan/water (2:1). A solution of 10% Na 2

CO

3 (25 mL) was added drop wise to pH 9-9.5. The mixture was cooled to 0 'C in an ice-water bath and Boc anhydride was added in one portion. The reaction was stirred at rt overnight and the pH of the mixture was maintained at 9-9.5 by addition of more 10% solution of Na 2

CO

3 if necessary. The reaction was monitored by TLC (50:50 ethyl acetate:isohexane). Once completed, the mixture 20 was filtered to eliminate the salts formed and the solvent was evaporated in vacuo. The aqueous mixture was extracted with 3 x 100 mL EtOAc, the combined organic phases were washed with 100 mL of water and 100 mL brine, dried over Na 2

SO

4 , filtered and the solvent was evaporated in vacuo to afford 3.79 g of the title carbamate as a clear oil (89%), 94% pure (HPLC), ESI, m/z: 312 (M*+Na). 25 WO 2010/034789 PCT/EP2009/062407 29 Step e 0 H

-

O N Z: H00 3,3-Dimethoxy-6-oxo-hexahydro-furo[3,2-blpvrrole-4-carboxylic acid tert-butyl ester 5 To the alcohol from step e) (3.674 g, 12.70 mmol) dissolved in DCM (80 mL) was added Dess Martin Periodinane (7.00 g, 16.5 mmol) and the solution was stirred for 3 h at room temperature. The reaction was then quenched by the addition of 10% Na 2

S

2 0 3 (aq) (150 mL) and the resulting slurry was stirred for 15 minutes. The mixture was transferred to a separation funnel and the phases were separated. The aqueous phase was extracted trice with DCM and 10 the combined organic phases were subsequently washed twice with sat. NaHCO 3 solution and were the dried, filtered, and concentrated. The crude material was purified by flash column chromatography (toluene/ethyl acetate 3:1) which gave the title compound (2.882 g, 79%). Step f H N 0 H 0 15 0 3,3-Dimethoxy-6-methylene-hexahydro-furo[3,2-blpyrrole-4-carboxylic acid tert-butyl ester The keto compound from step e (1.10 g, 3.83 mmol) was dissolved in dry THF (30 mL) and the solution was cooled to 0 'C. A solution of methyl triphenylphosphonium bromide ( 4.0 g, 11.2 20 mmol) and KOtBu (1.17 g, 10.5 mmol) in dry THF (40 mL) was added in 3 aliquots with 2 hours interval. After 6 hrs the solution was poured into a separatory funnel with diethyl ether (70 mL) and extracted with 10 % citric acid (aq)( 2

*

4 0 mL). The organic phase was washed with saturated aqueous NaHCO 3 (40 mL), dried with Na 2

SO

4 , filtered and the solvent was evaporated in vacuo. The crude product was purified by flash chromatography (heptane: ethyl 25 acetate 4:1) which gave the title compound (524 mg, 48%) 1 H NMR (CDC13, 400 MHz) 6 1.48 (s, 9H), 3.27 (s, 3H), 3.40 (d, 3H, J = 16.6), 3.57- 3.64 (m, 1H), 3.84 (d, 1H, J = 9.5), 3.92 (d, 1H, J = 16.3), 4.07- 4.25 (m, 1H), 4.35- 4.49 (m, 1H), 4.98 (bs, 1H), 5.22 (d, 1H, J = 16.4), 5.34 (s, 1H).

WO 2010/034789 PCT/EP2009/062407 30 Step q OH H N 0 O H e O 6-Hydroxymethyl-3,3-dimethoxy-hexahydro-furo[3,2-blpvrrole-4-carboxylic acid tert-butyl ester 5 The olefin from step f) (524 mg, 1.84 mmol) was dissolved in dry THF (70 mL). 9-BBN-H (0.5 M in THF) (7.34 mL, 3.67 mmol) was added and the solution was stirred over night. The solvent was removed by rotary evaporation and redissolved in THF (20 mL). MeOH (10 mL) was slowly added to the solution and when the gas evolution had ceased, H 2 0 (20 mL) was added to the solution followed by NaBO 3 . The solution was filtered after it had been stirred for 10 18 hrs and the filtrate was diluted with EtOAc (70 mL) and washed with brine (2*50 mL). The organic phase was dried with Na 2

SO

4 , filtered and the solvent was evaporated in vacuo. The crude product was purified by flash chromatography (heptane: ethyl acetate 2:1) which gave the title compound (477 mg, 86%). 1 H NMR (CDC13,400 MHz) 61.47 (s, 9H), 2.09- 2.25 (m, 2H), 3.02- 3.20 (m, 1 H), 3.29 (s, 3H), 15 3.39 (s, 3H), 3.65- 3.93 (m, 4H), 4.44 (d, 1 H, J = 5.7), 4.70- 4.84 (m, 1 H). Step h 0 O H -aO N 0 O H e 6-Formyl-3,3-dimethoxy-hexahydro-furo[3,2-blpvrrole-4-carboxylic acid tert-butyl ester 20 To a solution of the alcohol of step g) 1 g (370 mg, 1.22 mmol) dissolved in dry DCM (10 mL) was added Dess Martin periodinane (673 mg, 1.59 mmol). The reaction was stirred for 40 minutes and then quenched by addition of 10 mL of 10% Na 2

S

2 0 3 : NaHCO 3 (sat) 1:1. The solution was diluted with DCM (50 mL) and extracted with a 1:1 mixture of 10% Na 2

S

2 0 3 : 25 NaHCO 3 (sat) (50 mL). The organic phase was dried with Na 2

SO

4 , filtered and evaporated. The crude product was purified by flash chromatography (heptane: ethyl acetate (2:1) which gave the title compound (290 mg, 79%).

WO 2010/034789 PCT/EP2009/062407 31 1 H NMR (CDC13, 400 MHz) 61.47 (s, 9H), 2.90- 3.06 (m, 1H), 3.29 (s, 3H), 3.38 (s, 3H), 3.67 3.85 (m, 2H), 3.88- 4.55 (m, 3H), 4.93- 5.19 (m, 1 H), 9.64* and 9.80* (s, 1 H). * Two peaks due to rotamers. Reference Example 4 5 6-nitrile P1 building block N H - 0 N Step a) NOH H ,N boc H 0 10 515 mg (1.71 mmol) of 6-Formyl-3,3-dimethoxy-hexahydro-furo[3,2-b]pyrrole-4-carboxylic acid tert-butyl ester from reference example 3,_130.6 mg (1.88 mmol) of hydroxylamine hydrochloride and 168 mg (2.05 mmol) of sodium acetate were stirred in ethanol-water mixtute (10/15 ml) at room temperature overnight. The mixture was evaporated and distributed 15 between water and ethyl acetate phases. The organic phase was washed with brine, dried over sodium sulfate, evaporated and purified on silica (EtOAc-hexane 1:1) to give the mixture of cis and trans-isomers of the above depicted. Rf 0.43 and 0.48 (EtOAc-hexane 1:1). Yield 395 mg (73%) NC H boc H 0 20 The oxime of step a) (114 mg, 0.36 mmol) and triethylamine (105 piL, 0.757 mmol) were dissolved in 1,5 ml of dichloromethane and cooled till -78 C. Trifluoromethanesulfonic anhydride (61 piL, 0.36 mmol) in 600 pL of dichloromethane was added dropwise over 7 min. The reaction mixture was allowed to warm up till room temperature and was stirred for 2 hours. The mixture was diluted with 15 ml of DCM, washed with precooled 5% citric acid, sodium WO 2010/034789 PCT/EP2009/062407 32 bicarbonate, brine, dried over sodium sulfate, evaporated and purified on silica (gradient EtOAc-hexane 1:3 to 1:1). Rf 0.65 (EtOAc-hexane 1:1). Yield 65 mg (61%) Reference Example 5 5 A typical P1/P2 deprotection and coupling N 0 N N H 0 H 0 The nitrile building block of reference example 4 (95 mg, 0.032 mmol) was dissolved in 5 ml of methanol cooled down to 00C and 0.5 ml of acetyl chloride was added dropwise. The resulting mixture was stirred at r.t. for 4h, then evaporated. The residue was dissolved in 2.5 ml of DMF, 10 80 mg (0.32 mmol) of Boc-Leu-OH was added, followed by addition of 0.5 ml of diisopropylethylamine. The resulting mixture was cooled down till 00C and 160 mg (0.42 mmol) of HATU (O-(7-Azabenzotruazol-1-yl)-N,N,N',N'-tetramethyluronium hexafluorophsphate) was added. The reaction mixture was allowed to warm up till room temperature and stirred for 1.5 h. Mixture was evaporated, distributed between water and ethyl acetate phases, organic phase 15 was washed with water, brine, dried over sodium sulfate, evaporated and purified on silica (EtOAc Rf 0.35) to give 82 mg of the title compound. Yield 82 mg (62%) for 2 steps. Reference Example 6 An alternative P3 building block 0 0 0

OCH

3 Br e OCH 3 F 0 0 0 0 0 0 F OCH 3 F OCH 3 F OH Br iriv . S N N 20 i. AcOH, bromine, RT, 2 h, 55 % yield; ii. KF, acetonitrile, 18-crown-6, 90 'C, 16 h; 31 % yield; iii. AcOH, bromine, 45 'C, 4 h, 100 % yield; iv. 4-Methyl-piperazine-1-carbothioic acid amide, A, 2 h, 74 % yield; LiOH, RT, 16 h, 100 % yield.

WO 2010/034789 PCT/EP2009/062407 33 Availability of starting materials Methyl 4-acetylbenzoate is available from Aldrich; 4-methyl-piperazine-1-carbothioic acid amide - 11 suppliers found in SciFinder (perhaps Chem Pur Products Ltd in Germany most convienient). 5 Step a) 4-(2-Bromo-acetyl)-benzoic acid methyl ester 0 Br OMe 0 To a solution of 4-acetyl-benzoic acid methyl ester (8.4 mmol) in acetic acid (20 mL) was added bromine (8.4 mmol). The reaction was stirred at RT for 2 h over which time the red 10 colour disappeared and an off white precipitate formed. The product was collected by filtration and washed with cold methanol/water (200 mL 1:1) to yield a white powder (55 %). 1H NMR (400MHz, CDC13) 3.98 (3H, s), 4.20 (2H, s), 8.02 (2H, d, J = 8Hz), 8.18 (2H, d, J = 8Hz). Step b) 4-(2-Fluoro-acetyl)-benzoic acid methyl ester 0 F 15 0 To a suspension of potassium fluoride (3.11 mmol) in acetonitrile (1 mL) was added 18-crown 6 (0.1 mmol) and the reaction was heated at 90 0C for 30 mins. 4-(2-Bromo-acetyl)-benzoic acid (1.56 mmol) was added and the reaction heated at 90 0C for 16 h. The reaction was diluted with water (10 mL) and extracted with ethyl acetate (3 x 20 mL). The product was 20 purified on silica eluting with 5-15 % ethyl acetate in iso-hexane to yield on concentration in vacuo of the desired fractions, the title product as a white solid (31 %). 1H NMR (400MHz, CDC13) 3.98 (3H, s), 5.55 (2H, d, J = 50Hz), 7.95 (2H, d, J = 8Hz), 8.18 (2H, d, J = 8Hz). Step c) 4-(2-Bromo-2-fluoro-acetyl)-benzoic acid methyl ester 0 Br F OMe Briy 25 0 To a suspension of 4-(2-fluoro-acetyl)-benzoic acid (1.19 mmol) in acetic acid (5 mL) was added bromine (1.19 mmol). The reaction was heated at 45 Cfor4 h over which time a green solution formed. The reaction was concentrated in vacuo and azeotroped twice with toluene to WO 2010/034789 PCT/EP2009/062407 34 yield the title compound as a green solid (100 %). The product was used crude in the next step. 1 H NMR (400MHz, CDC13) 3.98 (3H, s), 7.04 (1 H, s), 8.05 - 8.10 (4H, m). Step d)4-[5-Fluoro-2-(4-methyl-piperazin-1-yl)-thiazol-4-yl]-benzoic acid methyl ester 0 SF K OMe N 5 4-(2-Bromo-2-fluoro-acetyl)-benzoic acid methyl ester (1.18 mmol) and 4-methyl-piperazine-1 carbothioic acid amide (1.18 mmol) were dissolved in ethanol (10 mL). The reaction was heated at reflux for 2 h. The reaction was cooled to RT causing the product to precipitate. The product was collected by filtration and washed with cold ethanol. The product was given an 10 aqueous sodium bicarbonate work up to yield the title compound as a colourless oil (74 %). MS (ES+) 337 (M+H, 100%). Step f) 4-[5-Fluoro-2-(4-methyl-piperazin-1-yl)-thiazol-4-yl]-benzoic acid di-hydrochloride 0 F OH N N 15 To a solution of 4-[5-fluoro-2-(4-methyl-piperazin-1-yl)-thiazol-4-yl]-benzoic acid methyl ester (0.43 mmol) in tetrahydrofuran/water (2.5 mL, 4:1) was added lithium hydroxide (0.5 mmol). The reaction was stirred at RT for 16 h. The reaction was concentrated in vacuo and hydrochloric acid (2N, 3 mL) was added causing the product to precipitate as a white solid. 20 The product was collected by filtration to yield the title product as a white solid (79 %). MS (ES+) 322 (M+H, 100%).

WO 2010/034789 PCT/EP2009/062407 35 Example 1 N O H N N o N / S, N-[1 -(6-cyano-3-oxo-hexahyd ro-fu ro[3,2-b]pyrrole-4-carbonvl)-3-methyl-butyll-4-[2-(4-methyl piperazin-1 -yl)thiazol-4-vll-benzamide 5 Step a) N O H N N 0 N N H H N N& S The P1/P2 building block of reference example 5 (60 mg, 0.147 mmol) was dissolved in 3 ml of methanol, cooled down to 0 0C and 0.4 mL of acetyl chloride was added dropwise. The 10 resulting mixture was stirred at r.t. for 4h, then evaporated. The residue was dissolved in 2.5 mL of DMF, 52 mg (0.147 mmol) of the P3 building block (prepared as in W00566180 as the acid was added, followed by addition of 0.5 mL of diisopropylethylamine. The resulting mixture was cooled down till 0 0C and 70 mg (0.184 mmol) of HATU (O-(7-azabenzotriazol-1-yl) N,N,N',N'-tetramethyluronium hexafluorophsphate) was added. The reaction mixture was 15 allowed to warm up till room temperature and stirred for 1.5 h. The mixture was evaporated, distributed between water and ethyl acetate phases, and the organic phase washed with water, brine, dried over sodium sulfate, evaporated and purified on silica (5% MeOH in EtOAc). The desired fractions were combined and concentrated in vacuo to afford the desired material in a yield of 56 mg (64 %), LC/MS 597 (M+1) 20 Step b) N 0 H N N 0 N /

S

WO 2010/034789 PCT/EP2009/062407 36 The ketal of step a) (56 mg, 0.094 mmol) was treated with 3 mL of TFA-water mixture (2.5% water in TFA) for 4 h. The reaction was monitored by LC/MS. The reaction mixture was evaporated, dissolved in acetonitrile (5 mL), stirred with solid sodium carbonate for 1 h, then solids were filtered off, the mother liquor was concentrated in vacuo, and purified by 5 preparative HPLC (NH 4 0Ac buffer, 30-80 system (MeCN-water) to give 25 mg of desired product (yield 45 %). LC/MS M+1 551, M+19 569 (hydrate form) Example 2 NC NQ \/Y 0 NC H NC N~ AcCI H H HATU-coupling

TFA/H

2 O N HN 0 H 2 0 0 H boc H2N O HCI N F (1 ) N % S N - F (3) '-N S 10 The protected P1-P2 building block of reference example 5 (1) (33 mg, 0.08mmol) was dissolved in 3 ml of methanol cooled down to 00C and 0.4 ml of acetyl chloride was added dropwise acid was added. The resulting mixture was stirred at r.t. for 4h, then evaporated. The residue was dissolved in 2.5 ml of DMF, 29 mg (0.08 mmol) of the P3 acid of reference example 2 (as a HCI salt) was added, followed by addition of 0.5 ml of diisopropylethylamine. 15 The resulting mixture was cooled down till 00C and 39 mg (0.101 mmol) of HATU (0-(7 azabenzotriazol-1-yl)-N,N,N',N'-tetramethyluronium hexafluorophosphate) was added. The reaction mixture was allowed to warmed up till room temperature and stirred for 1.5 h. Mixture was evaporated, distributed between water and ethyl acetate phases, organic phase was washed with water, brine, dried over sodium sulfate, evaporated and purified on silica (5% 20 MeOH in EtOAc). Yield of (3) 32mg (67%), LC/MS 615 (M+1) Ketal (3) (32 mg, 0.054mmol) was treated with 3 ml of TFA-water mixture (2,5% water in TFA) for 4 h. The reaction was monitored by LC/MS. Reaction mixture was evaporated, dissolved in acetonitrile (5 ml), stirred with solid sodium carbonate for 1 h, then solids were filtered off, 25 mother liquor was concentrated i vacuo, and purified on prep. LC/MS purified by prep. HPLC

(NH

4 0Ac buffer, 30_80 system (MeCN-water) to give 13 mg of product (yield 42%). LC/MS M+1 569, M+19 587 (hydrate form) WO 2010/034789 PCT/EP2009/062407 37 Example 3 NC NC X/2- NC H NC T 0i\ 0 H 0 AcCI 0 01NN N HATU-coupling TFA/H2O o H 0eO H N 0 HN O H 2 N 0 H HCI N43 F N (1) (2) S-N N ' F (5) .-N S The protected P1 P2 bilding block of reference example 5 (1) (33 mg, 0.08mmol) was dissolved in 3 ml of methanol cooled down to 00C and 0.4 ml of acetyl chloride was added dropwise acid 5 was added. The resulting mixture was stirred at r.t. for 4h, then evaporated. The residue was dissolved in 2.5 ml of DMF, 29 mg (0.08 mmol) of the P3 acid of reference example 6, as a HCI salt) was added, followed by addition of 0.5 ml of diisopropylethylamine. The resulting mixture was cooled down till 00C and 39 mg (0.101 mmol) of HATU (O-(7-azabenzotriazol-1 yl)-N,N,N',N'-tetramethyluronium hexafluorophsphate) was added. The reaction mixture was 10 allowed to warm up till room temperature and stirred for 1.5 h. Mixture was evaporated, distributed between water and ethyl acetate phases, organic phase was washed with water, brine, dried over sodium sulfate, evaporated and purified on silica (5% MeOH in EtOAc). Yield of (5) 30mg (63%), LC/MS 615 (M+1) 15 Ketal (5) (30 mg, 0.051 mmol) was treated with 3 ml of TFA-water mixture (2,5% water in TFA) for 4 h. The reaction was monitored by LC/MS. Reaction mixture was evaporated, dissolved in acetonitrile (5 ml), stirred with solid sodium carbonate for 1 h, then solids were filtered off, mother liquor was concentrated i vacuo, and purified on prep. LC/MS purified by prep. HPLC

(NH

4 0Ac buffer, 30_80 system (MeCN-water) to give 11 mg of product (yield 38%). LC/MS 20 M+1 569, M+19 587 (hydrate form) Biological Examples Determination of cathepsin K proteolytic catalytic activity 25 Convenient assays for cathepsin K are carried out using human recombinant enzyme, such as that described in PDB. ID BC016058 standard; mRNA; HUM; 1699 BP. DE Homo sapiens cathepsin K (pycnodysostosis), mRNA (cDNA clone MGC:23107 RX MEDLINE;. RX PUBMED; 12477932.

WO 2010/034789 PCT/EP2009/062407 38 DR RZPD; IRALp962G1234. DR SWISS-PROT; P43235; The recombinant cathepsin K can be expressed in a variety of commercially available expression systems including E coli, Pichia and Baculovirus systems. The purified enzyme is 5 activated by removal of the prosequence by conventional methods. Standard assay conditions for the determination of kinetic constants used a fluorogenic peptide substrate, typically H-D-Ala-Leu-Lys-AMC, and were determined in either 100 mM Mes/Tris, pH 7.0 containing 1 mM EDTA and 10 mM 2-mercaptoethanol orl00mMNa phosphate, imM EDTA, 0.1%PEG4000 pH 6.5 or 100 mM Na acetate, pH 5.5 containing 5 mM EDTA and 20 10 mM cysteine, in each case optionally with 1 M DTT as stabiliser. The enzyme concentration used was 5 nM. The stock substrate solution was prepared at 10 mM in DMSO. Screens were carried out at a fixed substrate concentration of 60 pM and detailed kinetic studies with doubling dilutions of substrate from 250 pM. The total DMSO concentration in the assay was kept below 3%. All assays were conducted at ambient temperature. Product fluorescence 15 (excitation at 390 nm, emission at 460 nm) was monitored with a Labsystems Fluoroskan Ascent fluorescent plate reader. Product progress curves were generated over 15 minutes following generation of AMC product. Cathepsin S Ki determination The assay uses baculovirus-expressed human cathepsin S and the boc-Val-Leu-Lys-AMC 20 fluorescent substrate available from Bachem in a 384 well plate format, in which 7 test compounds can be tested in parallel with a positive control comprising a known cathepsin S inhibitor comparator. Substrate dilutions 280pl/well of 12.5% DMSO are added to rows B - H of two columns of a 96 deep well 25 polypropylene plate. 70pl/well of substrate is added to row A. 2 x 250pl/well of assay buffer (100mM Na phosphate, 100mM NaCl, pH 6.5) is added to row A, mixed, and double diluted down the plate to row H. Inhibitor dilutions 100 pl/well of assay buffer is added to columns 2-5 and 7-12 of 4 rows of a 96 well V bottom 30 polypropylene plate. 200pl/well of assay buffer is added to columns 1 and 6.

WO 2010/034789 PCT/EP2009/062407 39 The first test compound prepared in DMSO is added to column 1 of the top row, typically at a volume to provide between 10 and 30 times the initially determined rough Ki. The rough Ki is calculated from a preliminary run in which 10 pl/well of 1mM boc-VLK-AMC (1/10 dilution of 10 mM stock in DMSO diluted into assay buffer) is dispensed to rows B to H and 20 pl/well to row 5 A of a 96 well Microfluor TM plate. 2 pl of each 10mM test compound is added to a separate well on row A, columns 1-10. Add 90 pl assay buffer containing 1mM DTT and 2 nM cathepsin S to each well of rows B-H and 180 pl to row A.Mix row A using a multichannel pipette and double dilute to row G. Mix row H and read in the fluorescent spectrophotometer. The readings are Prism data fitted to the competitive inhibition equation, setting S = 100 pM and KM 10 = 100 pM to obtain an estimate of the Ki, up to a maximum of 100 pM. The second test compound is added to column 6 of the top row, the third to column 1 of the second row etc. Add 1 pl of comparator to column 6 of the bottom row. Mix column 1 and double dilute to column 5. Mix column 6 and double dilute to column 10. Using an 8-channel multistepping pipette set to 5 x 10 pl, distribute 10 pl/well of substrate to 15 the 384 well assay plate. Distribute the first column of the substrate dilution plate to all columns of the assay plate starting at row A. The tip spacing of the multichannel pipette will correctly skip alternate rows. Distribute the second column to all columns starting at row B. Using a 12-channel multistepping pipette set to 4 x 1Opl, distribute 1Opl/well of inhibitor to the 384 well assay plate. Distribute the first row of the inhibitor dilution plate to alternate rows of 20 the assay plate starting at Al. The tip spacing of the multichannel pipette will correctly skip alternate columns. Similarly, distribute the second, third and fourth rows to alternate rows and columns starting at A2, B1 and B2 respectively. Mix 20 ml assay buffer and 20 pl 1 M DTT. Add sufficient cathepsin S to give 2 nM final concentration. 25 Using the a distributor such as a Multidrop 384, add 30 pl/well to all wells of the assay plate and read in fluorescent spectrophotomoter such as an Ascent.

WO 2010/034789 PCT/EP2009/062407 40 Fluorescent readings, (excitation and emission wavelengths 390nm and 460nm respectively, set using bandpass filters) reflecting the extent of enzyme cleavage of the fluorescent substrate, notwithstanding the inhibitor, are linear rate fitted for each well. Fitted rates for all wells for each inhibitor are fitted to the competitive inhibition equation using 5 SigmaPlot 2000 to determine V, Km and Ki values. Cathepsin L Ki The procedure above with the following amendments is used for the determination of Ki for cathepsin L. The enzyme is commercially available human cathepsin L (for example Calbiochem). The 10 substrate is H-D-Val-Leu-Lys-AMC available from Bahcem. The assay buffer is 100mM sodium acetate 1mM EDTA, pH5.5) The DMSO stock (10mM in 100%DMSO) is diluted to 10% in assay buffer. Enzyme is prepared at 5nM concentration in assay buffer plus 1mM dithiothreitol just before use. 2ul of 10mM inhibitor made up in 100% DMSO is dispensed into row A. 1 Opl of 50 pM substrate (=1/200 dilution of 10 mM stock in DMSO,diluted in assay buffer) 15 Inhibition Studies Potential inhibitors are screened using the above assay with variable concentrations of test compound. Reactions were initiated by addition of enzyme to buffered solutions of substrate and inhibitor. Ki values were calculated according to equation 1. VS K- K+ S (1) K, where vo is the velocity of the reaction, V is the maximal velocity, S is the concentration of 20 substrate with Michaelis constant of Km, and I is the concentration of inhibitor. Results are presented as: A under 50 nanomolar B 50-500 nanomolar C 501-1000 nanomolar 25 D 1001 - 5000 nanomolar E 5001 - 10 000 nanomolar F in excess of 10 000 nanomolar WO 2010/034789 PCT/EP2009/062407 41 TABLE 1 Example Test Number Ki cathepsin K Ki cathepsin S Ki cathepsin L 1 Test 1 A D B 1 Test 2 3.0 nM 3 300 nM 530 nM The compounds of formula || are thus potent inhibitors of cathepsin K and yet selective over the closely related cathepsin S and L. 5 Metabolic Stability Compounds of the invention and the indicated comparative examples were tested for metabolic stability in a cytosol assay in which the compounds were incubated with commercially available human hepatic cytosol fractions and the disappearance of the compound monitored by HPLC or LC/MS. Pooled human liver cytosol fractions are less likely 10 to represent outlier individuals than blood from a single individual and can be stored frozen, unlike whole blood. The cytosol assay thus provides a consistent assay testbed as a guide to the stability of a compound in the in vivo environment, such as when exposed to whole blood. 15 In short, test compounds (2 pM) are incubated in pooled human liver cytosol (Xenotech LLC Lenexa US, 1 mg/mL protein in 0.1 M phosphate buffer, pH 7.4) at 37 0 centigrade over a one hour period. The incubations are initiated by the addition of 1mM NADPH co-factor. Timed sub-samples were taken at 0, 20, 40 and 60 minutes and "crash precipitated" by the addition of 3 volumes of ice-cold acetonitrile. The samples were centrifuged at reduced temperature and 20 the supernatants were separated and analyzed by LC-MS-MS. Alternatively, an analogous stability assay is carried out in human or monkey whole blood and/or commerically available liver microsomes. 25 TABLE 2 Example Structure CLint CLint whole blood HLM ul/min/mg ul/min/mg WO 2010/034789 PCT/EP2009/062407 42 comparative 9 49 H example 0 0 N N H H NN 0 0 N / S Example 1 iN NA NA H 0 0 N N H H N ire 0 0 N /_ S The Comparative Example represents a compound bearing a carbon-carbon bond at the 6 position within the scope of W02008/007107 cited above. It was prepared in a facile manner from compound 1d (scheme 1). Hence with the exocyclic alkene 1d in hand, stereoselective 5 hydrogenation of the alkene with Adams' catalyst (platinum dioxide) in ethyl acetate under a hydrogen atmosphere, proceeded with syn addition of hydrogen. This hydrogenation afforded essentially one product, namely the C-6 methyl isomer (LCMS [M+H] = 288 found) with R stereochemistry in good yield. The facial selectivity seen here for the hydrogenation step, is similar to that reported previously in the literature for a closely related bicyclic structure 10 (Srinivas et al, Synlett, 1999, 555-556). The thus prepared building block was deprotected, elongated and oxidised to the active keto form as for the compopunds of the invention exemplified above. Improved stability in vivo allows for a better distribution of the compound in the body throughout the day, notwithstanding QD or BID dosing. This is particularly important for 15 indications such as osteoporosis where diurnal variation is significant. Permeability This experiment measures transport of inhibitors through the cells of the human gastroenteric canal. The assay uses the well known Caco-2 cells with a passage number between 40 and 60.

WO 2010/034789 PCT/EP2009/062407 43 Apical to basolateral transport Generally every compound will be tested in 2-4 wells. The basolateral and the apical wells will contain 1.5 mL and 0.4 mL transport buffer (TB), respectively, and the standard concentration of the tested substances is 10 IM. Furthermore all test solutions and buffers will contain 1% 5 DMSO. Prior to the experiment the transport plates are pre-coated with culture medium containing 10% serum for 30 minutes to avoid nonspecific binding to plastic material. After 21 to 28 days in culture on filter supports the cells are ready for permeability experiments. Transport plate no 1 comprises 3 rows of 4 wells each. Row 1 is denoted Wash, row 2 "30 minutes" and row 3 "60 minutes". Transport plate no 2 comprises 3 rows of 4 wells, one 10 denoted row 4 "90 minutes", row 5 "120 minutes and the remaining row unassigned. The culture medium from the apical wells is removed and the inserts are transferred to a wash row (No. 1) in a transport plate (plate no.1) out of 2 plates without inserts, which have already been prepared with 1.5 mL transport buffer (HBSS, 25 mM HEPES, pH 7.4) in rows 1 to 5. In A->B screening the TB in basolateral well also contains 1% Bovine Serum Albumin. 15 0.5 mL transport buffer (HBSS, 25 mM MES, pH 6.5) is added to the inserts and the cell monolayers equilibrated in the transport buffer system for 30 minutes at 37 'C in a polymix shaker. After being equilibrated to the buffer system the Transepithelial electrical resistance value (TEER) is measured in each well by an EVOM chop stick instrument. The TEER values are usually between 400 to 1000 Q per well (depends on passage number used). 20 The transport buffer (TB, pH 6.5) is removed from the apical side and the insert is transferred to the 30 minutes row (No. 2) and fresh 425 pL TB (pH 6.5), including the test substance is added to the apical (donor) well. The plates are incubated in a polymix shaker at 370C with a low shaking velocity of approximately 150 to 300 rpm. After 30 minutes incubation in row 2 the inserts will be moved to new pre-warmed basolateral 25 (receiver) wells every 30 minutes; row 3 (60 minutes), 4 (90 minutes) and 5 (120 minutes). 25 pL samples will be taken from the apical solution after -2 minutes and at the end of the experiment. These samples represent donor samples from the start and the end of the experiment. 300 pL will be taken from the basolateral (receiver) wells at each scheduled time point and the 30 post value of TEER is measured at the end the experiment. To all collected samples acetonitrile will be added to a final concentration of 50% in the samples. The collected samples will be stored at -200C until analysis by HPLC or LC-MS.

WO 2010/034789 PCT/EP2009/062407 44 Basolateral to apical transport Generally every compound will be tested in 2-4 wells. The basolateral and the apical wells will contain 1.55 mL and 0.4 mL TB, respectively, and the standard concentration of the tested substances is 10 p.M. Furthermore all test solutions and buffers will contain 1% DMSO. Prior to 5 the experiment the transport plates are precoated with culture medium containing 10% serum for 30 minutes to avoid nonspecific binding to plastic material. After 21 to 28 days in culture on filter supports the cells are ready for permeability experiments. The culture medium from the apical wells are removed and the inserts are transferred to a wash row (No.1) in a new plate without inserts (Transport plate). 10 The transport plate comprises 3 rows of 4 wells. Row 1 is denoted "wash" and row 3 is the "experimental row". The transport plate has previously been prepared with 1.5 mL TB (pH 7.4) in wash row No. 1 and with 1.55 mL TB (pH 7.4), including the test substance, in experimental row No. 3 (donor side). 0.5 mL transport buffer (HBSS, 25 mM MES, pH 6.5) is added to the inserts in row No. 1 and 15 the cell monolayers are equilibrated in the transport buffer system for 30 minutes, 37 OC in a polymix shaker. After being equilibrated to the buffer system the TEER value is measured in each well by an EVOM chop stick instrument. The transport buffer (TB, pH 6.5) is removed from the apical side and the insert is transferred to row 3 and 400 pL fresh TB, pH 6.5 is added to the inserts. After 30 minutes 250 pL is 20 withdrawn from the apical (receiver) well and replaced by fresh transport buffer. Thereafter 250 pL samples will be withdrawn and replaced by fresh transport buffer every 30 minutes until the end of the experiment at 120 minutes, and finally a post value of TEER is measured at the end of the experiment. A 25 pL samples will be taken from the basolateral (donor) compartment after -2 minutes and at the end of the experiment. These samples represent donor samples 25 from the start and the end of the experiment. To all collected samples acetonitrile will be added to a final concentration of 50% in the samples. The collected samples will be stored at -200C until analysis by HPLC or LC-MS. Calculation Determination of the cumulative fraction absorbed, FAcum, versus time. FAcum is calculated 30 from: WO 2010/034789 PCT/EP2009/062407 45 CR FAcum"Z DI Where CRi is the receiver concentration at the end of the interval i and CDi is the donor concentration at the beginning of interval i. A linear relationship should be obtained. The determination of permeability coefficients (Papp, cm/s) are calculated from: (k -VR) 5 Papp (A .60) where k is the transport rate (min- 1 ) defined as the slope obtained by linear regression of cumulative fraction absorbed (FAcum ) as a function of time (min), VR is the volume in the receiver chamber (mL), and A is the area of the filter (cm 2 ). Reference compounds Category of absorption in Markers % absorption in man man PASSIVE TRANSPORT Low (0-20%) Mannitol 16 Methotrexate 20 Moderate (21-75%) Acyclovir 30 High (76-100%) Propranolol 90 Caffeine 100 ACTIVE TRANSPORT Amino acid transporter L-Phenylalanine 100 ACTIVE EFFLUX PGP-MDR1 Digoxin 30 10 Greater permeability through the gastrointestinal tissue is advantageous in that it allows for the use of a smaller dose to achieve similar levels of exposure to a less permeable compound administered in a higher dose. A low dose is advantageous in that minimises the cost of goods for a daily dose, which is a crucial parameter in a drug which is taken for protracted time 15 periods.

WO 2010/034789 PCT/EP2009/062407 46 Mutaqienicity The mutagenic potential of compounds is conveniently tested in the Ames Test, typically carried out in a variety of bacterial strains such as Salmonella typhimurium TA100, TA102, TA 1535, TA 1537 with and without liver S9 fraction activation, for example at 30, 300 and 3000 5 ug/plate concentrations. Ames testing is readily available at a number of CROs around the world. Abbreviations DMF dimethylformamide DCM dichloromethane 10 TBDMS tert-butyldimethylsilyl RT room temperature THF tetrahydrofuran Ac acetyl TLC thin layer chromatography DMAP dimethylaminopyridine EtOAc ethyl acetate uM micromolar 15 All references referred to in this application, including patents and patent applications, are incorporated herein by reference to the fullest extent possible. Throughout the specification and the claims which follow, unless the context requires otherwise, the word 'comprise', and variations such as 'comprises' and 'comprising', will be understood to imply the inclusion of a stated integer, step, group of integers or group of steps 20 but not to the exclusion of any other integer, step, group of integers or group of steps.

Claims (15)

1. A compound of formula 1l: N H 0 R3 O A 2 N H H A'E0 0 (R4)m wherein 5 R 3 is C1-C3 alkyl or C3-C6 cycloalkyl, either of which is optionally substituted with one or two methyl and/or a fluoro, trifluoromethyl or methoxy, when R 3 is C3-C6 cycloalkyl it may alternatively be gem subsituted with fluoro; R 4 is methyl or fluoro; m is 0, 1 or 2; E is a bond, or thiazolyl, optionally substituted with methyl or fluoro; 10 A 1 is CH or N, A 2 is CR 6 R 7 or NR , provided at least one of A 1 and A 2 comprises N; n is 0 or 1 such that the ring containing A 1 and A 2 is a saturated, nitrogen-containing ring of 5 or 6 ring atoms; R 6 is H, C1-C4 alkyl, C1-C4 haloalkyl, C1-C3 alkyl-O-C 1 -C 3 alkyl, or when A 2 is C, R 6 can 15 also be C 1 -C 4 alkoxy or F; R 7 is H, C1-C4 alkyl or F; or a pharmaceutically acceptable salt, N-oxide or hydrate thereof.

2. A compound according to claim 1, with the formula Ila: N H 0 R3 O AN N N H H N 0 0 1 R6-N N R4)/ S R5 WO 2010/034789 PCT/EP2009/062407 48 wherein R 3 is branched C2-C6 alkyl or C3-C6 cycloalkyl, either of which is optionally substituted with one or two fluoro or with a trifluoromethyl; R 4 is methyl or fluoro; m is 0, 1 or 2; 5 R 5 is H, methyl or fluoro; R 6 is CrC6 alkyl; or a pharmaceutically acceptable salt, N-oxide or hydrate thereof.

3. A compound according to any one of the preceding claims, wherein R 3 is the side chain of leucine. 10

4. A compound according to any one of the preceding claims, wherein m represents 0 and R 5 represents F.

5. A compound according to any one of claims 1 to 4, wherein n represents 1, R 4 is F and R 5 is H.

6. A compound according to claim 5, wherein R 4 is positioned as shown by the partial 15 structure: 0 N H R4

7. A compound according to any of claims 2-6, wherein R 6 is CH 3 .

8. A compound according to claim 1 which is selected from: N 0 ,H N 0 S N N.O N / H H N N 0O S WO 2010/034789 PCT/EP2009/062407 49 N 0 H N N 0 N H H N \- N 0 / F N 0 H N 0 N / H H N 0 HN 0 V--- NS / F or a pharmaceutically acceptable salt, hydrate or N-oxide thereof.

9. A pharmaceutical composition comprising a compound as defined in any preceding 5 claim and a pharmaceutically acceptable carrier or diluent therefor.

10. Use of a compound as defined in any of claims 1 to 8 in the manufacture of a medicament for the treatment or prevention of disorder selected from: osteoporosis, gingival diseases (such as gingivitis and periodontitis), 10 Paget's disease, hypercalcaemia of malignancy, metabolic bone disease, diseases characterised by excessive cartilage or matrix degradation (such as osteoarthritis and rheumatoid arthritis), 15 bone cancers including neoplasia, pain (especially chronic pain).

11. A compound according to any one of claims 1 to 8 for use in the treatment or prevention of a disorder selected from: osteoporosis, 20 gingival diseases (such as gingivitis and periodontitis), Paget's disease, hypercalcaemia of malignancy, metabolic bone disease, WO 2010/034789 PCT/EP2009/062407 50 diseases characterised by excessive cartilage or matrix degradation (such as osteoarthritis and rheumatoid arthritis), bone cancers including neoplasia, pain (especially chronic pain). 5

12. A method for the treatment of a disorder mediated by cathepsin K comprising administering a safe and effective amount of a compound according to any one of claims 1 to 8 to a subject in need thereof.

13. The method of claim 12, wherein the disorder is selected from: osteoporosis, 10 gingival diseases (such as gingivitis and periodontitis), Paget's disease, hypercalcaemia of malignancy, metabolic bone disease, diseases characterised by excessive cartilage or matrix degradation (such as 15 osteoarthritis and rheumatoid arthritis), bone cancers including neoplasia, pain (especially chronic pain).

14. A compound of the formula: N S ORb I H ORb H 20 wherein the Rb groups define a ketal, such as the bis methyl ketal or together define a cyclic ketal such as 1,3-dioxolane, or an N-protected derivative thereof.

15. A compound according to claim 14 which is: N OMe H OMe 25